HEADER IMMUNE SYSTEM 06-FEB-09 3G6D TITLE CRYSTAL STRUCTURE OF THE COMPLEX BETWEEN CNTO607 FAB AND IL-13 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CNTO607 FAB LIGHT CHAIN; COMPND 3 CHAIN: L; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: CNTO607 FAB HEAVY CHAIN; COMPND 7 CHAIN: H; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: INTERLEUKIN-13; COMPND 11 CHAIN: A; COMPND 12 FRAGMENT: UNP RESIDUES 21-132; COMPND 13 SYNONYM: IL-13; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 7 EXPRESSION_SYSTEM_CELL_LINE: HEK 293; SOURCE 8 EXPRESSION_SYSTEM_ORGAN: KIDNEY; SOURCE 9 EXPRESSION_SYSTEM_CELL: HUMAN EMBRYONIC KIDNEY 293 CELLS; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 16 EXPRESSION_SYSTEM_CELL_LINE: HEK 293; SOURCE 17 EXPRESSION_SYSTEM_ORGAN: KIDNEY; SOURCE 18 EXPRESSION_SYSTEM_CELL: HUMAN EMBRYONIC KIDNEY 293 CELLS; SOURCE 19 MOL_ID: 3; SOURCE 20 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 21 ORGANISM_COMMON: HUMAN; SOURCE 22 ORGANISM_TAXID: 9606; SOURCE 23 GENE: IL13, NC30; SOURCE 24 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 25 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS IL-13, ANTIBODY, COMPLEX, EPITOPE, CYTOKINE, GLYCOPROTEIN, SECRETED, KEYWDS 2 MONOCLONAL ANTIBODY, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR A.TEPLYAKOV,G.OBMOLOVA,G.L.GILLILAND REVDAT 5 06-SEP-23 3G6D 1 REMARK SEQADV REVDAT 4 30-MAY-12 3G6D 1 DBREF VERSN REVDAT 3 26-MAY-09 3G6D 1 JRNL REVDAT 2 28-APR-09 3G6D 1 JRNL REVDAT 1 07-APR-09 3G6D 0 JRNL AUTH A.TEPLYAKOV,G.OBMOLOVA,S.J.WU,J.LUO,J.KANG,K.O'NEIL, JRNL AUTH 2 G.L.GILLILAND JRNL TITL EPITOPE MAPPING OF ANTI-INTERLEUKIN-13 NEUTRALIZING ANTIBODY JRNL TITL 2 CNTO607. JRNL REF J.MOL.BIOL. V. 389 115 2009 JRNL REFN ISSN 0022-2836 JRNL PMID 19361524 JRNL DOI 10.1016/J.JMB.2009.03.076 REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 12362 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.263 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.900 REMARK 3 FREE R VALUE TEST SET COUNT : 501 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.28 REMARK 3 REFLECTION IN BIN (WORKING SET) : 823 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.20 REMARK 3 BIN R VALUE (WORKING SET) : 0.2800 REMARK 3 BIN FREE R VALUE SET COUNT : 32 REMARK 3 BIN FREE R VALUE : 0.3370 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4054 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.18000 REMARK 3 B22 (A**2) : 2.76000 REMARK 3 B33 (A**2) : -1.58000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.647 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.443 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 28.326 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.906 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.823 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4155 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5670 ; 1.361 ; 1.951 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 536 ; 6.704 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 159 ;38.716 ;24.780 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 647 ;20.079 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;20.400 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 645 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3132 ; 0.000 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1865 ; 0.239 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2826 ; 0.315 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 169 ; 0.158 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 31 ; 0.297 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 2 ; 0.074 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2735 ; 1.387 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4332 ; 4.750 ;20.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1635 ;20.351 ;40.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1338 ;26.417 ;99.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3G6D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-FEB-09. REMARK 100 THE DEPOSITION ID IS D_1000051479. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-DEC-06 REMARK 200 TEMPERATURE (KELVIN) : 115 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : VARIMAX HF REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK 9.6L REMARK 200 DATA SCALING SOFTWARE : D*TREK 9.6L REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13028 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.200 REMARK 200 RESOLUTION RANGE LOW (A) : 63.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.5 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : 0.16100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.31 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.2 REMARK 200 DATA REDUNDANCY IN SHELL : 2.50 REMARK 200 R MERGE FOR SHELL (I) : 0.22000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRIES 3G6A, 1IJZ REMARK 200 REMARK 200 REMARK: THE OVERALL R-MERGE IS VERY HIGH BECAUSE OF VERY WEAK REMARK 200 DIFFRACTION. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM ACETATE PH 4.5, 4.9 M REMARK 280 SODIUM FORMATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 33.27000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 91.17500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.01500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 91.17500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.27000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.01500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5290 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.9 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 34.01500 REMARK 350 BIOMT3 1 0.000000 0.000000 -1.000000 -91.17500 REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24350 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.3 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU L 211 REMARK 465 CYS L 212 REMARK 465 SER L 213 REMARK 465 SER H 224 REMARK 465 CYS H 225 REMARK 465 ASP H 226 REMARK 465 LYS H 227 REMARK 465 THR H 228 REMARK 465 HIS H 229 REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 PRO A 3 REMARK 465 GLY A 110 REMARK 465 ARG A 111 REMARK 465 PHE A 112 REMARK 465 ASN A 113 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS H 138 CD CE NZ REMARK 470 LYS H 223 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO L 39 118.24 -30.54 REMARK 500 ASP L 50 -48.23 68.36 REMARK 500 ASN L 51 -6.16 -141.48 REMARK 500 ALA L 83 -177.94 175.77 REMARK 500 ASN L 95 -132.72 66.75 REMARK 500 PRO L 165 154.48 -45.94 REMARK 500 SER H 25 142.12 -172.29 REMARK 500 ASP H 106 19.14 -146.90 REMARK 500 MET H 107 0.48 -65.25 REMARK 500 SER H 122 33.84 -95.31 REMARK 500 ASP H 153 63.16 62.20 REMARK 500 PHE H 155 137.81 -172.27 REMARK 500 SER H 182 -14.32 -49.92 REMARK 500 PRO H 194 124.65 -31.53 REMARK 500 THR H 200 -60.80 -129.86 REMARK 500 LYS A 25 -74.27 -67.39 REMARK 500 ALA A 26 -177.35 -69.64 REMARK 500 ASN A 30 81.03 42.02 REMARK 500 LEU A 39 84.36 -68.23 REMARK 500 THR A 40 -82.40 -125.42 REMARK 500 ALA A 41 -68.42 -159.58 REMARK 500 ILE A 52 -26.83 -37.42 REMARK 500 SER A 82 55.15 -98.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 H 1001 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3G6A RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ANTI-IL-13 ANTIBODY CNTO607 REMARK 999 REMARK 999 SEQUENCE REMARK 999 FAB WAS OBTAINED BY PAPAIN CLEAVAGE OF ANTIBODY. DBREF 3G6D L 1 213 PDB 3G6D 3G6D 1 213 DBREF 3G6D H 1 229 PDB 3G6D 3G6D 1 229 DBREF 3G6D A 2 113 UNP P35225 IL13_HUMAN 21 132 SEQADV 3G6D MET A 1 UNP P35225 EXPRESSION TAG SEQRES 1 L 213 SER TYR GLU LEU THR GLN PRO PRO SER VAL SER VAL ALA SEQRES 2 L 213 PRO GLY GLN THR ALA ARG ILE SER CYS SER GLY ASP ASN SEQRES 3 L 213 ILE GLY GLY THR PHE VAL SER TRP TYR GLN GLN LYS PRO SEQRES 4 L 213 GLY GLN ALA PRO VAL LEU VAL ILE TYR ASP ASP ASN ASP SEQRES 5 L 213 ARG PRO SER GLY ILE PRO GLU ARG PHE SER GLY SER ASN SEQRES 6 L 213 SER GLY ASN THR ALA THR LEU THR ILE SER GLY THR GLN SEQRES 7 L 213 ALA GLU ASP GLU ALA ASP TYR TYR CYS GLY THR TRP ASP SEQRES 8 L 213 MET VAL THR ASN ASN VAL PHE GLY GLY GLY THR LYS LEU SEQRES 9 L 213 THR VAL LEU GLY GLN PRO LYS ALA ALA PRO SER VAL THR SEQRES 10 L 213 LEU PHE PRO PRO SER SER GLU GLU LEU GLN ALA ASN LYS SEQRES 11 L 213 ALA THR LEU VAL CYS LEU ILE SER ASP PHE TYR PRO GLY SEQRES 12 L 213 ALA VAL THR VAL ALA TRP LYS ALA ASP SER SER PRO VAL SEQRES 13 L 213 LYS ALA GLY VAL GLU THR THR THR PRO SER LYS GLN SER SEQRES 14 L 213 ASN ASN LYS TYR ALA ALA SER SER TYR LEU SER LEU THR SEQRES 15 L 213 PRO GLU GLN TRP LYS SER HIS ARG SER TYR SER CYS GLN SEQRES 16 L 213 VAL THR HIS GLU GLY SER THR VAL GLU LYS THR VAL ALA SEQRES 17 L 213 PRO THR GLU CYS SER SEQRES 1 H 229 GLN VAL GLN LEU VAL GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 H 229 PRO GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 H 229 PHE THR PHE ASN SER TYR TRP ILE ASN TRP VAL ARG GLN SEQRES 4 H 229 ALA PRO GLY LYS GLY LEU GLU TRP VAL SER GLY ILE ALA SEQRES 5 H 229 TYR ASP SER SER ASN THR LEU TYR ALA ASP SER VAL LYS SEQRES 6 H 229 GLY ARG PHE THR ILE SER ARG ASP ASN SER LYS ASN THR SEQRES 7 H 229 LEU TYR LEU GLN MET ASN SER LEU ARG ALA GLU ASP THR SEQRES 8 H 229 ALA VAL TYR TYR CYS ALA ARG GLY LEU GLY ALA PHE HIS SEQRES 9 H 229 TRP ASP MET GLN PRO ASP TYR TRP GLY GLN GLY THR LEU SEQRES 10 H 229 VAL THR VAL SER SER ALA SER THR LYS GLY PRO SER VAL SEQRES 11 H 229 PHE PRO LEU ALA PRO SER SER LYS SER THR SER GLY GLY SEQRES 12 H 229 THR ALA ALA LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO SEQRES 13 H 229 GLU PRO VAL THR VAL SER TRP ASN SER GLY ALA LEU THR SEQRES 14 H 229 SER GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SER SER SEQRES 15 H 229 GLY LEU TYR SER LEU SER SER VAL VAL THR VAL PRO SER SEQRES 16 H 229 SER SER LEU GLY THR GLN THR TYR ILE CYS ASN VAL ASN SEQRES 17 H 229 HIS LYS PRO SER ASN THR LYS VAL ASP LYS LYS VAL GLU SEQRES 18 H 229 PRO LYS SER CYS ASP LYS THR HIS SEQRES 1 A 113 MET GLY PRO VAL PRO PRO SER THR ALA LEU ARG GLU LEU SEQRES 2 A 113 ILE GLU GLU LEU VAL ASN ILE THR GLN ASN GLN LYS ALA SEQRES 3 A 113 PRO LEU CYS ASN GLY SER MET VAL TRP SER ILE ASN LEU SEQRES 4 A 113 THR ALA GLY MET TYR CYS ALA ALA LEU GLU SER LEU ILE SEQRES 5 A 113 ASN VAL SER GLY CYS SER ALA ILE GLU LYS THR GLN ARG SEQRES 6 A 113 MET LEU SER GLY PHE CYS PRO HIS LYS VAL SER ALA GLY SEQRES 7 A 113 GLN PHE SER SER LEU HIS VAL ARG ASP THR LYS ILE GLU SEQRES 8 A 113 VAL ALA GLN PHE VAL LYS ASP LEU LEU LEU HIS LEU LYS SEQRES 9 A 113 LYS LEU PHE ARG GLU GLY ARG PHE ASN HET SO4 H1001 5 HETNAM SO4 SULFATE ION FORMUL 4 SO4 O4 S 2- HELIX 1 1 ASN L 26 THR L 30 5 5 HELIX 2 2 GLN L 78 GLU L 82 5 5 HELIX 3 3 SER L 122 ALA L 128 1 7 HELIX 4 4 THR L 182 HIS L 189 1 8 HELIX 5 5 THR H 28 TYR H 32 5 5 HELIX 6 6 ASP H 62 LYS H 65 5 4 HELIX 7 7 ARG H 87 THR H 91 5 5 HELIX 8 8 PHE H 103 MET H 107 5 5 HELIX 9 9 SER H 165 ALA H 167 5 3 HELIX 10 10 SER A 7 GLN A 24 1 18 HELIX 11 11 GLY A 42 ASN A 53 1 12 HELIX 12 12 ILE A 60 CYS A 71 1 12 HELIX 13 13 VAL A 92 LEU A 106 1 15 SHEET 1 A 5 SER L 9 VAL L 12 0 SHEET 2 A 5 THR L 102 VAL L 106 1 O THR L 105 N VAL L 10 SHEET 3 A 5 ALA L 83 ASP L 91 -1 N ALA L 83 O LEU L 104 SHEET 4 A 5 SER L 33 GLN L 37 -1 N GLN L 37 O ASP L 84 SHEET 5 A 5 VAL L 44 ILE L 47 -1 O VAL L 44 N GLN L 36 SHEET 1 B 4 SER L 9 VAL L 12 0 SHEET 2 B 4 THR L 102 VAL L 106 1 O THR L 105 N VAL L 10 SHEET 3 B 4 ALA L 83 ASP L 91 -1 N ALA L 83 O LEU L 104 SHEET 4 B 4 ASN L 95 PHE L 98 -1 O ASN L 95 N ASP L 91 SHEET 1 C 3 ALA L 18 SER L 23 0 SHEET 2 C 3 THR L 69 ILE L 74 -1 O LEU L 72 N ILE L 20 SHEET 3 C 3 PHE L 61 SER L 66 -1 N SER L 62 O THR L 73 SHEET 1 D 4 SER L 115 PHE L 119 0 SHEET 2 D 4 THR L 132 PHE L 140 -1 O LEU L 136 N THR L 117 SHEET 3 D 4 TYR L 173 SER L 180 -1 O TYR L 173 N PHE L 140 SHEET 4 D 4 VAL L 160 THR L 162 -1 N GLU L 161 O TYR L 178 SHEET 1 E 4 SER L 115 PHE L 119 0 SHEET 2 E 4 THR L 132 PHE L 140 -1 O LEU L 136 N THR L 117 SHEET 3 E 4 TYR L 173 SER L 180 -1 O TYR L 173 N PHE L 140 SHEET 4 E 4 SER L 166 LYS L 167 -1 N SER L 166 O ALA L 174 SHEET 1 F 4 PRO L 155 VAL L 156 0 SHEET 2 F 4 THR L 146 ALA L 151 -1 N TRP L 149 O VAL L 156 SHEET 3 F 4 TYR L 192 HIS L 198 -1 O SER L 193 N LYS L 150 SHEET 4 F 4 SER L 201 VAL L 207 -1 O VAL L 207 N TYR L 192 SHEET 1 G 4 GLN H 3 SER H 7 0 SHEET 2 G 4 LEU H 18 SER H 25 -1 O SER H 25 N GLN H 3 SHEET 3 G 4 THR H 78 MET H 83 -1 O LEU H 79 N CYS H 22 SHEET 4 G 4 PHE H 68 ASP H 73 -1 N SER H 71 O TYR H 80 SHEET 1 H 6 LEU H 11 VAL H 12 0 SHEET 2 H 6 THR H 116 VAL H 120 1 O THR H 119 N VAL H 12 SHEET 3 H 6 ALA H 92 ARG H 98 -1 N TYR H 94 O THR H 116 SHEET 4 H 6 ILE H 34 GLN H 39 -1 N VAL H 37 O TYR H 95 SHEET 5 H 6 GLU H 46 ILE H 51 -1 O SER H 49 N TRP H 36 SHEET 6 H 6 THR H 58 TYR H 60 -1 O LEU H 59 N GLY H 50 SHEET 1 I 4 LEU H 11 VAL H 12 0 SHEET 2 I 4 THR H 116 VAL H 120 1 O THR H 119 N VAL H 12 SHEET 3 I 4 ALA H 92 ARG H 98 -1 N TYR H 94 O THR H 116 SHEET 4 I 4 TYR H 111 TRP H 112 -1 O TYR H 111 N ARG H 98 SHEET 1 J 4 SER H 129 SER H 136 0 SHEET 2 J 4 THR H 144 TYR H 154 -1 O GLY H 148 N LEU H 133 SHEET 3 J 4 TYR H 185 PRO H 194 -1 O VAL H 193 N ALA H 145 SHEET 4 J 4 HIS H 173 THR H 174 -1 N HIS H 173 O VAL H 190 SHEET 1 K 4 SER H 129 SER H 136 0 SHEET 2 K 4 THR H 144 TYR H 154 -1 O GLY H 148 N LEU H 133 SHEET 3 K 4 TYR H 185 PRO H 194 -1 O VAL H 193 N ALA H 145 SHEET 4 K 4 VAL H 178 LEU H 179 -1 N VAL H 178 O SER H 186 SHEET 1 L 3 THR H 160 TRP H 163 0 SHEET 2 L 3 ILE H 204 HIS H 209 -1 O ASN H 206 N SER H 162 SHEET 3 L 3 THR H 214 LYS H 219 -1 O VAL H 216 N VAL H 207 SHEET 1 M 2 MET A 33 TRP A 35 0 SHEET 2 M 2 LYS A 89 GLU A 91 -1 O ILE A 90 N VAL A 34 SSBOND 1 CYS L 22 CYS L 87 1555 1555 2.06 SSBOND 2 CYS L 135 CYS L 194 1555 1555 2.03 SSBOND 3 CYS H 22 CYS H 96 1555 1555 2.05 SSBOND 4 CYS H 149 CYS H 205 1555 1555 2.04 SSBOND 5 CYS A 29 CYS A 57 1555 1555 2.05 SSBOND 6 CYS A 45 CYS A 71 1555 1555 2.05 CISPEP 1 TYR L 141 PRO L 142 0 3.14 CISPEP 2 PHE H 155 PRO H 156 0 -6.12 CISPEP 3 GLU H 157 PRO H 158 0 -1.19 SITE 1 AC1 3 SER H 136 SER H 137 LYS H 138 CRYST1 66.540 68.030 182.350 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015029 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014699 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005484 0.00000