HEADER TRANSCRIPTION/DNA 08-FEB-09 3G6T TITLE GR GAMMA DNA-BINDING DOMAIN:FKBP5 16BP COMPLEX-34 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUCOCORTICOID RECEPTOR; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 440-525; COMPND 5 SYNONYM: GR, NUCLEAR RECEPTOR SUBFAMILY 3 GROUP C MEMBER 1; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: DNA (5'-D(*TP*AP*GP*AP*AP*CP*AP*CP*CP*CP*TP*GP*TP*TP*CP*T)- COMPND 10 3'); COMPND 11 CHAIN: D; COMPND 12 ENGINEERED: YES; COMPND 13 OTHER_DETAILS: FKBP5 BOTTOM STRAND; COMPND 14 MOL_ID: 3; COMPND 15 MOLECULE: DNA (5'-D(*AP*AP*GP*AP*AP*CP*AP*GP*GP*GP*TP*GP*TP*TP*CP*T)- COMPND 16 3'); COMPND 17 CHAIN: C; COMPND 18 ENGINEERED: YES; COMPND 19 OTHER_DETAILS: FKBP5 TOP STRAND SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: BROWN RAT,RAT,RATS; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: GRL, NR3C1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) GOLD; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 MOL_ID: 3; SOURCE 14 SYNTHETIC: YES KEYWDS GLUCOCORTICOID, DNA-BINDING, ALLOSTERY, LEVER ARM, TRANSCRIPTION, KEYWDS 2 HORMONE, ALTERNATIVE INITIATION, CHROMATIN REGULATOR, CYTOPLASM, KEYWDS 3 LIPID-BINDING, METAL-BINDING, NUCLEUS, PHOSPHOPROTEIN, POLYMORPHISM, KEYWDS 4 RECEPTOR, STEROID-BINDING, TRANSCRIPTION REGULATION, UBL KEYWDS 5 CONJUGATION, ZINC, ZINC-FINGER, TRANSCRIPTION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.A.PUFALL,K.R.YAMAMOTO,S.H.MEIJSING REVDAT 4 21-FEB-24 3G6T 1 REMARK SEQADV REVDAT 3 01-NOV-17 3G6T 1 REMARK REVDAT 2 02-JUN-09 3G6T 1 JRNL REVDAT 1 21-APR-09 3G6T 0 JRNL AUTH S.H.MEIJSING,M.A.PUFALL,A.Y.SO,D.L.BATES,L.CHEN,K.R.YAMAMOTO JRNL TITL DNA BINDING SITE SEQUENCE DIRECTS GLUCOCORTICOID RECEPTOR JRNL TITL 2 STRUCTURE AND ACTIVITY. JRNL REF SCIENCE V. 324 407 2009 JRNL REFN ISSN 0036-8075 JRNL PMID 19372434 JRNL DOI 10.1126/SCIENCE.1164265 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.09 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.150 REMARK 3 COMPLETENESS FOR RANGE (%) : 84.4 REMARK 3 NUMBER OF REFLECTIONS : 24730 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.610 REMARK 3 FREE R VALUE TEST SET COUNT : 1881 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 31.0901 - 4.0812 0.97 2719 224 0.1672 0.2083 REMARK 3 2 4.0812 - 3.2405 0.98 2679 227 0.1642 0.1940 REMARK 3 3 3.2405 - 2.8312 0.98 2678 212 0.1840 0.2202 REMARK 3 4 2.8312 - 2.5724 0.97 2632 223 0.1763 0.2173 REMARK 3 5 2.5724 - 2.3881 0.96 2576 207 0.1627 0.1868 REMARK 3 6 2.3881 - 2.2474 0.93 2507 188 0.1660 0.2065 REMARK 3 7 2.2474 - 2.1349 0.89 2389 203 0.1932 0.2351 REMARK 3 8 2.1349 - 2.0419 0.79 2126 176 0.2135 0.2508 REMARK 3 9 2.0419 - 1.9633 0.59 1583 133 0.2390 0.2314 REMARK 3 10 1.9633 - 1.9000 0.36 959 88 0.2223 0.2549 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.39 REMARK 3 B_SOL : 71.43 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 1.590 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.670 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 36.19 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 3036 REMARK 3 ANGLE : 1.481 5263 REMARK 3 CHIRALITY : 0.115 291 REMARK 3 PLANARITY : 0.006 394 REMARK 3 DIHEDRAL : 20.882 896 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): -15.6536 -15.3726 -19.0056 REMARK 3 T TENSOR REMARK 3 T11: 0.3071 T22: 0.2684 REMARK 3 T33: 0.3916 T12: 0.0120 REMARK 3 T13: 0.0221 T23: -0.0827 REMARK 3 L TENSOR REMARK 3 L11: 3.7431 L22: 0.9836 REMARK 3 L33: 0.8543 L12: 0.0416 REMARK 3 L13: 0.4985 L23: -0.7161 REMARK 3 S TENSOR REMARK 3 S11: 0.0686 S12: 0.0236 S13: -0.4420 REMARK 3 S21: 0.0796 S22: -0.0798 S23: 0.1007 REMARK 3 S31: -0.0607 S32: -0.0845 S33: -0.0055 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): NULL NULL NULL REMARK 3 T TENSOR REMARK 3 T11: 0.4844 T22: 0.6803 REMARK 3 T33: 0.3222 T12: 0.0299 REMARK 3 T13: -0.1038 T23: 0.0358 REMARK 3 L TENSOR REMARK 3 L11: 3.7223 L22: 2.2738 REMARK 3 L33: -1.8788 L12: -0.2039 REMARK 3 L13: 0.1827 L23: -1.1599 REMARK 3 S TENSOR REMARK 3 S11: -0.1926 S12: -1.1772 S13: -0.2412 REMARK 3 S21: 0.4753 S22: 0.0618 S23: -0.2696 REMARK 3 S31: -0.3236 S32: -0.2977 S33: 0.0989 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN C REMARK 3 ORIGIN FOR THE GROUP (A): NULL NULL NULL REMARK 3 T TENSOR REMARK 3 T11: 0.5182 T22: 0.5722 REMARK 3 T33: 0.3077 T12: 0.1934 REMARK 3 T13: 0.0413 T23: 0.0203 REMARK 3 L TENSOR REMARK 3 L11: 5.7495 L22: 2.1993 REMARK 3 L33: 5.7226 L12: -1.4277 REMARK 3 L13: 0.5801 L23: -1.5865 REMARK 3 S TENSOR REMARK 3 S11: -0.5500 S12: -1.2807 S13: -0.6666 REMARK 3 S21: 0.6475 S22: 0.9407 S23: 0.2354 REMARK 3 S31: -0.9506 S32: -0.3527 S33: -0.3252 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN D REMARK 3 ORIGIN FOR THE GROUP (A): NULL NULL NULL REMARK 3 T TENSOR REMARK 3 T11: 0.4384 T22: 0.9301 REMARK 3 T33: 0.2048 T12: 0.0995 REMARK 3 T13: 0.0628 T23: 0.1204 REMARK 3 L TENSOR REMARK 3 L11: 6.1353 L22: 2.6584 REMARK 3 L33: 6.2857 L12: -3.7963 REMARK 3 L13: 6.2556 L23: -2.7645 REMARK 3 S TENSOR REMARK 3 S11: -0.6985 S12: -2.1273 S13: -0.4606 REMARK 3 S21: 0.7802 S22: 0.7761 S23: 0.2717 REMARK 3 S31: -1.2620 S32: -1.3098 S33: -0.1145 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3G6T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-FEB-09. REMARK 100 THE DEPOSITION ID IS D_1000051495. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-MAR-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.115799 REMARK 200 MONOCHROMATOR : DOUBLE FLAT CRYSTAL, SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26432 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.3 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : 0.04400 REMARK 200 FOR THE DATA SET : 32.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 44.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.40 REMARK 200 R MERGE FOR SHELL (I) : 0.29200 REMARK 200 R SYM FOR SHELL (I) : 0.26000 REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50MM HEPES, PH 7.0, 100MM KCL, 10MM REMARK 280 MGCL2, 5% PEG400, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 57.84650 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 19.85800 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 57.84650 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 19.85800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, D, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 436 REMARK 465 LYS A 515 REMARK 465 LYS A 516 REMARK 465 ILE A 517 REMARK 465 LYS A 518 REMARK 465 GLY A 519 REMARK 465 ILE A 520 REMARK 465 GLN A 521 REMARK 465 GLN A 522 REMARK 465 ALA A 523 REMARK 465 THR A 524 REMARK 465 ALA A 525 REMARK 465 GLY A 526 REMARK 465 GLY B 436 REMARK 465 SER B 437 REMARK 465 ALA B 510 REMARK 465 ARG B 511 REMARK 465 LYS B 512 REMARK 465 THR B 513 REMARK 465 LYS B 514 REMARK 465 LYS B 515 REMARK 465 LYS B 516 REMARK 465 ILE B 517 REMARK 465 LYS B 518 REMARK 465 GLY B 519 REMARK 465 ILE B 520 REMARK 465 GLN B 521 REMARK 465 GLN B 522 REMARK 465 ALA B 523 REMARK 465 THR B 524 REMARK 465 ALA B 525 REMARK 465 GLY B 526 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 514 CG CD CE NZ REMARK 470 HIS B 438 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DC D 15 O3' DC D 15 C3' -0.063 REMARK 500 DA C 1 C2 DA C 1 N3 -0.057 REMARK 500 DA C 1 N9 DA C 1 C4 -0.053 REMARK 500 DG C 9 O3' DG C 9 C3' -0.041 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC D 8 O4' - C1' - N1 ANGL. DEV. = 2.4 DEGREES REMARK 500 DC D 9 O4' - C1' - N1 ANGL. DEV. = 4.3 DEGREES REMARK 500 DC D 10 N3 - C2 - O2 ANGL. DEV. = -4.2 DEGREES REMARK 500 DT D 11 N3 - C4 - O4 ANGL. DEV. = 4.8 DEGREES REMARK 500 DT D 11 C5 - C4 - O4 ANGL. DEV. = -4.5 DEGREES REMARK 500 DG D 12 C3' - C2' - C1' ANGL. DEV. = -5.4 DEGREES REMARK 500 DT D 14 C4 - C5 - C7 ANGL. DEV. = 3.7 DEGREES REMARK 500 DT D 14 C6 - C5 - C7 ANGL. DEV. = -4.1 DEGREES REMARK 500 DT D 16 O4' - C1' - N1 ANGL. DEV. = 2.6 DEGREES REMARK 500 DA C 1 O4' - C1' - C2' ANGL. DEV. = 3.1 DEGREES REMARK 500 DA C 1 C6 - N1 - C2 ANGL. DEV. = 6.0 DEGREES REMARK 500 DA C 1 C2 - N3 - C4 ANGL. DEV. = -8.3 DEGREES REMARK 500 DA C 1 N3 - C4 - C5 ANGL. DEV. = 8.1 DEGREES REMARK 500 DA C 1 C5 - C6 - N1 ANGL. DEV. = -5.9 DEGREES REMARK 500 DA C 1 C4 - C5 - N7 ANGL. DEV. = 3.3 DEGREES REMARK 500 DA C 1 C5 - N7 - C8 ANGL. DEV. = -5.3 DEGREES REMARK 500 DA C 1 N7 - C8 - N9 ANGL. DEV. = 3.3 DEGREES REMARK 500 DA C 1 N3 - C4 - N9 ANGL. DEV. = -8.2 DEGREES REMARK 500 DG C 3 O5' - C5' - C4' ANGL. DEV. = -5.6 DEGREES REMARK 500 DA C 5 C3' - C2' - C1' ANGL. DEV. = -6.5 DEGREES REMARK 500 DA C 5 O4' - C1' - N9 ANGL. DEV. = 5.4 DEGREES REMARK 500 DG C 9 C1' - O4' - C4' ANGL. DEV. = -6.2 DEGREES REMARK 500 DG C 9 O4' - C1' - N9 ANGL. DEV. = -7.3 DEGREES REMARK 500 DG C 9 C4 - C5 - N7 ANGL. DEV. = 3.2 DEGREES REMARK 500 DG C 9 N9 - C4 - C5 ANGL. DEV. = -3.1 DEGREES REMARK 500 DG C 9 C6 - C5 - N7 ANGL. DEV. = -4.8 DEGREES REMARK 500 DG C 9 N1 - C6 - O6 ANGL. DEV. = 7.0 DEGREES REMARK 500 DG C 9 C5 - C6 - O6 ANGL. DEV. = -5.9 DEGREES REMARK 500 DT C 14 O4' - C1' - N1 ANGL. DEV. = -4.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 444 -1.86 69.10 REMARK 500 ARG A 471 178.22 69.71 REMARK 500 HIS A 473 -9.48 78.08 REMARK 500 ASP A 482 32.62 -147.91 REMARK 500 LYS A 512 5.27 -69.01 REMARK 500 ASP B 445 -169.27 -73.90 REMARK 500 ARG B 471 -36.58 153.01 REMARK 500 ASP B 482 43.68 -141.19 REMARK 500 MET B 506 140.85 -38.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 HIS A 473 ASN A 474 -110.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 527 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 440 SG REMARK 620 2 CYS A 443 SG 109.8 REMARK 620 3 CYS A 457 SG 115.2 109.0 REMARK 620 4 CYS A 460 SG 107.3 112.8 102.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 528 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 477 SG REMARK 620 2 CYS A 483 SG 103.8 REMARK 620 3 CYS A 493 SG 112.2 115.3 REMARK 620 4 CYS A 496 SG 107.0 110.9 107.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 527 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 440 SG REMARK 620 2 CYS B 443 SG 115.9 REMARK 620 3 CYS B 457 SG 112.2 108.2 REMARK 620 4 CYS B 460 SG 105.0 112.3 102.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 528 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 477 SG REMARK 620 2 CYS B 483 SG 101.4 REMARK 620 3 CYS B 493 SG 116.2 112.7 REMARK 620 4 CYS B 496 SG 110.6 109.9 106.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 527 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 528 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 527 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 528 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3FYL RELATED DB: PDB REMARK 900 SAME PROTEIN, DIFFERENT DNA REMARK 900 RELATED ID: 3G6P RELATED DB: PDB REMARK 900 SAME COMPLEX, DIFFERENT CRYSTAL CONDITION REMARK 900 RELATED ID: 3G6Q RELATED DB: PDB REMARK 900 SAME DNA BINDING SITE, INSERTION MUTATION GR GAMMA REMARK 900 RELATED ID: 3G6R RELATED DB: PDB REMARK 900 RELATED ID: 3G6U RELATED DB: PDB REMARK 900 RELATED ID: 3G8X RELATED DB: PDB REMARK 900 RELATED ID: 3G97 RELATED DB: PDB REMARK 900 RELATED ID: 3G99 RELATED DB: PDB DBREF 3G6T A 440 526 UNP P06536 GCR_RAT 440 525 DBREF 3G6T B 440 526 UNP P06536 GCR_RAT 440 525 DBREF 3G6T C 1 16 PDB 3G6T 3G6T 1 16 DBREF 3G6T D 1 16 PDB 3G6T 3G6T 1 16 SEQADV 3G6T GLY A 436 UNP P06536 EXPRESSION TAG SEQADV 3G6T SER A 437 UNP P06536 EXPRESSION TAG SEQADV 3G6T HIS A 438 UNP P06536 EXPRESSION TAG SEQADV 3G6T MET A 439 UNP P06536 EXPRESSION TAG SEQADV 3G6T ARG A 471 UNP P06536 INSERTION SEQADV 3G6T GLY B 436 UNP P06536 EXPRESSION TAG SEQADV 3G6T SER B 437 UNP P06536 EXPRESSION TAG SEQADV 3G6T HIS B 438 UNP P06536 EXPRESSION TAG SEQADV 3G6T MET B 439 UNP P06536 EXPRESSION TAG SEQADV 3G6T ARG B 471 UNP P06536 INSERTION SEQRES 1 A 91 GLY SER HIS MET CYS LEU VAL CYS SER ASP GLU ALA SER SEQRES 2 A 91 GLY CYS HIS TYR GLY VAL LEU THR CYS GLY SER CYS LYS SEQRES 3 A 91 VAL PHE PHE LYS ARG ALA VAL GLU GLY ARG GLN HIS ASN SEQRES 4 A 91 TYR LEU CYS ALA GLY ARG ASN ASP CYS ILE ILE ASP LYS SEQRES 5 A 91 ILE ARG ARG LYS ASN CYS PRO ALA CYS ARG TYR ARG LYS SEQRES 6 A 91 CYS LEU GLN ALA GLY MET ASN LEU GLU ALA ARG LYS THR SEQRES 7 A 91 LYS LYS LYS ILE LYS GLY ILE GLN GLN ALA THR ALA GLY SEQRES 1 B 91 GLY SER HIS MET CYS LEU VAL CYS SER ASP GLU ALA SER SEQRES 2 B 91 GLY CYS HIS TYR GLY VAL LEU THR CYS GLY SER CYS LYS SEQRES 3 B 91 VAL PHE PHE LYS ARG ALA VAL GLU GLY ARG GLN HIS ASN SEQRES 4 B 91 TYR LEU CYS ALA GLY ARG ASN ASP CYS ILE ILE ASP LYS SEQRES 5 B 91 ILE ARG ARG LYS ASN CYS PRO ALA CYS ARG TYR ARG LYS SEQRES 6 B 91 CYS LEU GLN ALA GLY MET ASN LEU GLU ALA ARG LYS THR SEQRES 7 B 91 LYS LYS LYS ILE LYS GLY ILE GLN GLN ALA THR ALA GLY SEQRES 1 D 16 DT DA DG DA DA DC DA DC DC DC DT DG DT SEQRES 2 D 16 DT DC DT SEQRES 1 C 16 DA DA DG DA DA DC DA DG DG DG DT DG DT SEQRES 2 C 16 DT DC DT HET ZN A 527 1 HET ZN A 528 1 HET ZN B 527 1 HET ZN B 528 1 HETNAM ZN ZINC ION FORMUL 5 ZN 4(ZN 2+) FORMUL 9 HOH *103(H2 O) HELIX 1 1 CYS A 457 GLU A 469 1 13 HELIX 2 2 CYS A 493 GLY A 505 1 13 HELIX 3 3 ASN A 507 ARG A 511 5 5 HELIX 4 4 CYS B 457 GLY B 470 1 14 HELIX 5 5 ARG B 471 TYR B 475 5 5 HELIX 6 6 CYS B 493 ALA B 504 1 12 SHEET 1 A 2 GLY A 449 HIS A 451 0 SHEET 2 A 2 VAL A 454 THR A 456 -1 O VAL A 454 N HIS A 451 SHEET 1 B 2 CYS B 450 HIS B 451 0 SHEET 2 B 2 VAL B 454 LEU B 455 -1 O VAL B 454 N HIS B 451 LINK SG CYS A 440 ZN ZN A 527 1555 1555 2.42 LINK SG CYS A 443 ZN ZN A 527 1555 1555 2.26 LINK SG CYS A 457 ZN ZN A 527 1555 1555 2.35 LINK SG CYS A 460 ZN ZN A 527 1555 1555 2.32 LINK SG CYS A 477 ZN ZN A 528 1555 1555 2.40 LINK SG CYS A 483 ZN ZN A 528 1555 1555 2.22 LINK SG CYS A 493 ZN ZN A 528 1555 1555 2.34 LINK SG CYS A 496 ZN ZN A 528 1555 1555 2.35 LINK SG CYS B 440 ZN ZN B 527 1555 1555 2.43 LINK SG CYS B 443 ZN ZN B 527 1555 1555 2.39 LINK SG CYS B 457 ZN ZN B 527 1555 1555 2.31 LINK SG CYS B 460 ZN ZN B 527 1555 1555 2.44 LINK SG CYS B 477 ZN ZN B 528 1555 1555 2.26 LINK SG CYS B 483 ZN ZN B 528 1555 1555 2.33 LINK SG CYS B 493 ZN ZN B 528 1555 1555 2.37 LINK SG CYS B 496 ZN ZN B 528 1555 1555 2.39 CISPEP 1 ARG A 471 GLN A 472 0 6.33 CISPEP 2 GLY B 470 ARG B 471 0 0.38 SITE 1 AC1 4 CYS A 440 CYS A 443 CYS A 457 CYS A 460 SITE 1 AC2 4 CYS A 477 CYS A 483 CYS A 493 CYS A 496 SITE 1 AC3 4 CYS B 440 CYS B 443 CYS B 457 CYS B 460 SITE 1 AC4 4 CYS B 477 CYS B 483 CYS B 493 CYS B 496 CRYST1 115.693 39.716 95.228 90.00 122.79 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008644 0.000000 0.005568 0.00000 SCALE2 0.000000 0.025179 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012491 0.00000