HEADER TRANSFERASE 09-FEB-09 3G6W TITLE ASYMETRIC GTP BOUND STRUCTURE OF UPRTASE FROM SULFOLOBUS SOLFATARICUS TITLE 2 CONTAINING PRPP-MG2+ IN HALF OF THE ACTIVE SITES AND R5P AND PPI IN TITLE 3 THE OTHER HALF COMPND MOL_ID: 1; COMPND 2 MOLECULE: URACIL PHOSPHORIBOSYLTRANSFERASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: UMP PYROPHOSPHORYLASE, UPRTASE; COMPND 5 EC: 2.4.2.9; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SULFOLOBUS SOLFATARICUS; SOURCE 3 ORGANISM_TAXID: 2287; SOURCE 4 GENE: SSO0231, UPP; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: NF1830; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PLFS2 KEYWDS ALLOSTERIC REGULATION, TETRAMER, SULFOLOBUS SOLFATARICUS, KEYWDS 2 PHOSPHORIBOSYLTRANSFERASE, PRPP, R5P, GTP, POP, MAGNESIUM, KEYWDS 3 GLYCOSYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.KADZIOLA,S.CHRISTOFFERSEN REVDAT 5 01-NOV-23 3G6W 1 HETSYN REVDAT 4 29-JUL-20 3G6W 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 01-NOV-17 3G6W 1 REMARK REVDAT 2 20-OCT-09 3G6W 1 JRNL REVDAT 1 01-SEP-09 3G6W 0 JRNL AUTH S.CHRISTOFFERSEN,A.KADZIOLA,E.JOHANSSON,M.RASMUSSEN, JRNL AUTH 2 M.WILLEMOES,K.F.JENSEN JRNL TITL STRUCTURAL AND KINETIC STUDIES OF THE ALLOSTERIC TRANSITION JRNL TITL 2 IN SULFOLOBUS SOLFATARICUS URACIL PHOSPHORIBOSYLTRANSFERASE: JRNL TITL 3 PERMANENT ACTIVATION BY ENGINEERING OF THE C-TERMINUS JRNL REF J.MOL.BIOL. V. 393 464 2009 JRNL REFN ISSN 0022-2836 JRNL PMID 19683539 JRNL DOI 10.1016/J.JMB.2009.08.019 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.ARENT,P.HARRIS,K.F.JENSEN,S.LARSEN REMARK 1 TITL ALLOSTERIC REGULATION AND COMMUNICATION BETWEEN SUBUNITS IN REMARK 1 TITL 2 URACIL PHOSPHORIBOSYLTRANSFERASE FROM SULFOLOBUS REMARK 1 TITL 3 SOLFATARICUS. REMARK 1 REF BIOCHEMISTRY V. 44 883 2005 REMARK 1 REFN ISSN 0006-2960 REMARK 1 PMID 15654744 REMARK 1 DOI 10.1021/BI048041L REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 19028 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.274 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 981 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6653 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 236 REMARK 3 SOLVENT ATOMS : 34 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.33 REMARK 3 ESD FROM SIGMAA (A) : 0.38 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.47 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.54 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.500 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3G6W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-FEB-09. REMARK 100 THE DEPOSITION ID IS D_1000051498. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-NOV-04 REMARK 200 TEMPERATURE (KELVIN) : 120 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MAX II REMARK 200 BEAMLINE : I711 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.954 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19229 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.09800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.39700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: DIFFERENCE FOURIER 1XTT.PDB REMARK 200 STARTING MODEL: PDB ENTRY 1XTT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG8000, 0.1M SODIUM CACODYLATE, REMARK 280 PH6.5, 200MM MAGNESIUM CHLORIDE, 10% GLYCEROL, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 49.37900 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33050 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -135.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 MET B 1 REMARK 465 VAL B 106 REMARK 465 GLU B 107 REMARK 465 VAL B 108 REMARK 465 ASP B 109 REMARK 465 GLY B 110 REMARK 465 LYS B 111 REMARK 465 GLU B 112 REMARK 465 VAL B 113 REMARK 465 PRO B 114 REMARK 465 MET C 1 REMARK 465 GLU C 107 REMARK 465 VAL C 108 REMARK 465 ASP C 109 REMARK 465 GLY C 110 REMARK 465 LYS C 111 REMARK 465 GLU C 112 REMARK 465 VAL C 113 REMARK 465 PRO C 114 REMARK 465 MET D 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO C 195 C - N - CA ANGL. DEV. = 9.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 7 46.05 -109.77 REMARK 500 LEU A 58 14.58 -67.46 REMARK 500 ASP A 69 1.07 -69.11 REMARK 500 ASN A 72 76.44 -117.21 REMARK 500 LEU A 79 131.06 -34.59 REMARK 500 ARG A 80 -110.76 91.12 REMARK 500 ALA A 81 -36.74 -35.99 REMARK 500 ASP A 118 86.29 -67.75 REMARK 500 LYS A 124 101.28 -177.13 REMARK 500 LYS A 132 14.82 57.30 REMARK 500 VAL A 133 -48.03 -133.52 REMARK 500 ASP A 140 113.11 -175.69 REMARK 500 ALA A 144 -81.07 -94.39 REMARK 500 ALA A 146 -3.41 75.76 REMARK 500 LYS A 158 -37.72 -34.87 REMARK 500 ASN A 160 76.36 34.05 REMARK 500 PRO A 195 -71.29 -44.65 REMARK 500 LEU A 207 17.85 -144.51 REMARK 500 ASP B 7 45.08 -108.11 REMARK 500 ASP B 20 108.67 -52.90 REMARK 500 ASP B 69 -7.19 -57.80 REMARK 500 ASN B 72 65.84 -114.75 REMARK 500 LEU B 79 117.73 -37.65 REMARK 500 ARG B 80 -110.86 106.64 REMARK 500 ALA B 81 -31.38 -38.85 REMARK 500 ASP B 116 -24.78 -145.40 REMARK 500 MET B 117 130.38 -32.14 REMARK 500 LYS B 124 111.57 -175.39 REMARK 500 VAL B 133 -55.21 -132.70 REMARK 500 ASP B 140 119.27 -175.56 REMARK 500 ALA B 144 -96.26 -89.75 REMARK 500 ALA B 146 9.83 89.18 REMARK 500 ASN B 198 -150.99 -64.95 REMARK 500 LEU B 207 14.52 -148.28 REMARK 500 ASP C 7 43.82 -109.28 REMARK 500 PRO C 57 -4.68 -50.04 REMARK 500 ASP C 69 -8.90 -54.52 REMARK 500 ASN C 72 61.88 -119.43 REMARK 500 LEU C 79 126.13 -27.95 REMARK 500 ARG C 80 -98.56 95.27 REMARK 500 ILE C 101 119.29 -160.89 REMARK 500 ARG C 105 -156.16 -58.46 REMARK 500 ASP C 116 15.68 175.38 REMARK 500 MET C 117 121.72 -3.71 REMARK 500 LYS C 124 106.62 -160.98 REMARK 500 ASP C 128 109.84 -58.90 REMARK 500 VAL C 133 -47.26 -133.38 REMARK 500 ASP C 140 103.03 178.39 REMARK 500 ALA C 144 -81.86 -87.57 REMARK 500 ALA C 146 18.21 51.85 REMARK 500 REMARK 500 THIS ENTRY HAS 69 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 305 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 217 O REMARK 620 2 HOH A 218 O 68.8 REMARK 620 3 PRP A 303 O3A 87.4 152.5 REMARK 620 4 PRP A 303 O1B 136.7 140.9 66.5 REMARK 620 5 PRP A 303 O2B 136.3 117.6 70.3 67.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 229 O REMARK 620 2 GTP A 301 O1B 151.3 REMARK 620 3 GTP A 301 O1A 80.5 93.8 REMARK 620 4 GTP D 217 O1B 81.6 126.8 90.1 REMARK 620 5 GTP D 217 O1A 80.3 105.3 160.3 82.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 218 O REMARK 620 2 GTP B 301 O1B 91.3 REMARK 620 3 GTP B 301 O1A 81.7 82.1 REMARK 620 4 HOH D 218 O 80.3 168.0 88.1 REMARK 620 5 GTP D 301 O1A 99.2 96.0 178.0 93.9 REMARK 620 6 GTP D 301 O1B 168.3 99.7 95.9 88.2 83.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG D 304 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH D 219 O REMARK 620 2 HOH D 220 O 75.8 REMARK 620 3 PRP D 303 O1B 141.0 122.2 REMARK 620 4 PRP D 303 O3B 120.9 129.8 76.3 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1XTV RELATED DB: PDB REMARK 900 SULFOLOBUS SOLFATARICUS URACIL PHOSPHORIBOSYLTRANSFERASE WITH REMARK 900 URIDINE 5'-MONOPHOSPHATE (UMP) BOUND TO HALF OF THE SUBUNITS REMARK 900 RELATED ID: 1XTU RELATED DB: PDB REMARK 900 SULFOLOBUS SOLFATARICUS URACIL PHOSPHORIBOSYLTRANSFERASE IN COMPLEX REMARK 900 WITH URIDINE 5'-MONOPHOSPHATE (UMP) AND CYTIDINE 5'-TRIPHOSPHATE REMARK 900 (CTP) REMARK 900 RELATED ID: 1XTT RELATED DB: PDB REMARK 900 SULFOLOBUS SOLFATARICUS URACIL PHOSPHORIBOSYLTRANSFERASE IN COMPLEX REMARK 900 WITH URIDINE 5'-MONOPHOSPHATE (UMP) REMARK 900 RELATED ID: 1VST RELATED DB: PDB DBREF 3G6W A 1 216 UNP Q980Q4 UPP_SULSO 1 216 DBREF 3G6W B 1 216 UNP Q980Q4 UPP_SULSO 1 216 DBREF 3G6W C 1 216 UNP Q980Q4 UPP_SULSO 1 216 DBREF 3G6W D 1 216 UNP Q980Q4 UPP_SULSO 1 216 SEQRES 1 A 216 MET PRO LEU TYR VAL ILE ASP LYS PRO ILE THR LEU HIS SEQRES 2 A 216 ILE LEU THR GLN LEU ARG ASP LYS TYR THR ASP GLN ILE SEQRES 3 A 216 ASN PHE ARG LYS ASN LEU VAL ARG LEU GLY ARG ILE LEU SEQRES 4 A 216 GLY TYR GLU ILE SER ASN THR LEU ASP TYR GLU ILE VAL SEQRES 5 A 216 GLU VAL GLU THR PRO LEU GLY VAL LYS THR LYS GLY VAL SEQRES 6 A 216 ASP ILE THR ASP LEU ASN ASN ILE VAL ILE ILE ASN ILE SEQRES 7 A 216 LEU ARG ALA ALA VAL PRO LEU VAL GLU GLY LEU LEU LYS SEQRES 8 A 216 ALA PHE PRO LYS ALA ARG GLN GLY VAL ILE GLY ALA SER SEQRES 9 A 216 ARG VAL GLU VAL ASP GLY LYS GLU VAL PRO LYS ASP MET SEQRES 10 A 216 ASP VAL TYR ILE TYR TYR LYS LYS ILE PRO ASP ILE ARG SEQRES 11 A 216 ALA LYS VAL ASP ASN VAL ILE ILE ALA ASP PRO MET ILE SEQRES 12 A 216 ALA THR ALA SER THR MET LEU LYS VAL LEU GLU GLU VAL SEQRES 13 A 216 VAL LYS ALA ASN PRO LYS ARG ILE TYR ILE VAL SER ILE SEQRES 14 A 216 ILE SER SER GLU TYR GLY VAL ASN LYS ILE LEU SER LYS SEQRES 15 A 216 TYR PRO PHE ILE TYR LEU PHE THR VAL ALA ILE ASP PRO SEQRES 16 A 216 GLU LEU ASN ASN LYS GLY TYR ILE LEU PRO GLY LEU GLY SEQRES 17 A 216 ASP ALA GLY ASP ARG ALA PHE GLY SEQRES 1 B 216 MET PRO LEU TYR VAL ILE ASP LYS PRO ILE THR LEU HIS SEQRES 2 B 216 ILE LEU THR GLN LEU ARG ASP LYS TYR THR ASP GLN ILE SEQRES 3 B 216 ASN PHE ARG LYS ASN LEU VAL ARG LEU GLY ARG ILE LEU SEQRES 4 B 216 GLY TYR GLU ILE SER ASN THR LEU ASP TYR GLU ILE VAL SEQRES 5 B 216 GLU VAL GLU THR PRO LEU GLY VAL LYS THR LYS GLY VAL SEQRES 6 B 216 ASP ILE THR ASP LEU ASN ASN ILE VAL ILE ILE ASN ILE SEQRES 7 B 216 LEU ARG ALA ALA VAL PRO LEU VAL GLU GLY LEU LEU LYS SEQRES 8 B 216 ALA PHE PRO LYS ALA ARG GLN GLY VAL ILE GLY ALA SER SEQRES 9 B 216 ARG VAL GLU VAL ASP GLY LYS GLU VAL PRO LYS ASP MET SEQRES 10 B 216 ASP VAL TYR ILE TYR TYR LYS LYS ILE PRO ASP ILE ARG SEQRES 11 B 216 ALA LYS VAL ASP ASN VAL ILE ILE ALA ASP PRO MET ILE SEQRES 12 B 216 ALA THR ALA SER THR MET LEU LYS VAL LEU GLU GLU VAL SEQRES 13 B 216 VAL LYS ALA ASN PRO LYS ARG ILE TYR ILE VAL SER ILE SEQRES 14 B 216 ILE SER SER GLU TYR GLY VAL ASN LYS ILE LEU SER LYS SEQRES 15 B 216 TYR PRO PHE ILE TYR LEU PHE THR VAL ALA ILE ASP PRO SEQRES 16 B 216 GLU LEU ASN ASN LYS GLY TYR ILE LEU PRO GLY LEU GLY SEQRES 17 B 216 ASP ALA GLY ASP ARG ALA PHE GLY SEQRES 1 C 216 MET PRO LEU TYR VAL ILE ASP LYS PRO ILE THR LEU HIS SEQRES 2 C 216 ILE LEU THR GLN LEU ARG ASP LYS TYR THR ASP GLN ILE SEQRES 3 C 216 ASN PHE ARG LYS ASN LEU VAL ARG LEU GLY ARG ILE LEU SEQRES 4 C 216 GLY TYR GLU ILE SER ASN THR LEU ASP TYR GLU ILE VAL SEQRES 5 C 216 GLU VAL GLU THR PRO LEU GLY VAL LYS THR LYS GLY VAL SEQRES 6 C 216 ASP ILE THR ASP LEU ASN ASN ILE VAL ILE ILE ASN ILE SEQRES 7 C 216 LEU ARG ALA ALA VAL PRO LEU VAL GLU GLY LEU LEU LYS SEQRES 8 C 216 ALA PHE PRO LYS ALA ARG GLN GLY VAL ILE GLY ALA SER SEQRES 9 C 216 ARG VAL GLU VAL ASP GLY LYS GLU VAL PRO LYS ASP MET SEQRES 10 C 216 ASP VAL TYR ILE TYR TYR LYS LYS ILE PRO ASP ILE ARG SEQRES 11 C 216 ALA LYS VAL ASP ASN VAL ILE ILE ALA ASP PRO MET ILE SEQRES 12 C 216 ALA THR ALA SER THR MET LEU LYS VAL LEU GLU GLU VAL SEQRES 13 C 216 VAL LYS ALA ASN PRO LYS ARG ILE TYR ILE VAL SER ILE SEQRES 14 C 216 ILE SER SER GLU TYR GLY VAL ASN LYS ILE LEU SER LYS SEQRES 15 C 216 TYR PRO PHE ILE TYR LEU PHE THR VAL ALA ILE ASP PRO SEQRES 16 C 216 GLU LEU ASN ASN LYS GLY TYR ILE LEU PRO GLY LEU GLY SEQRES 17 C 216 ASP ALA GLY ASP ARG ALA PHE GLY SEQRES 1 D 216 MET PRO LEU TYR VAL ILE ASP LYS PRO ILE THR LEU HIS SEQRES 2 D 216 ILE LEU THR GLN LEU ARG ASP LYS TYR THR ASP GLN ILE SEQRES 3 D 216 ASN PHE ARG LYS ASN LEU VAL ARG LEU GLY ARG ILE LEU SEQRES 4 D 216 GLY TYR GLU ILE SER ASN THR LEU ASP TYR GLU ILE VAL SEQRES 5 D 216 GLU VAL GLU THR PRO LEU GLY VAL LYS THR LYS GLY VAL SEQRES 6 D 216 ASP ILE THR ASP LEU ASN ASN ILE VAL ILE ILE ASN ILE SEQRES 7 D 216 LEU ARG ALA ALA VAL PRO LEU VAL GLU GLY LEU LEU LYS SEQRES 8 D 216 ALA PHE PRO LYS ALA ARG GLN GLY VAL ILE GLY ALA SER SEQRES 9 D 216 ARG VAL GLU VAL ASP GLY LYS GLU VAL PRO LYS ASP MET SEQRES 10 D 216 ASP VAL TYR ILE TYR TYR LYS LYS ILE PRO ASP ILE ARG SEQRES 11 D 216 ALA LYS VAL ASP ASN VAL ILE ILE ALA ASP PRO MET ILE SEQRES 12 D 216 ALA THR ALA SER THR MET LEU LYS VAL LEU GLU GLU VAL SEQRES 13 D 216 VAL LYS ALA ASN PRO LYS ARG ILE TYR ILE VAL SER ILE SEQRES 14 D 216 ILE SER SER GLU TYR GLY VAL ASN LYS ILE LEU SER LYS SEQRES 15 D 216 TYR PRO PHE ILE TYR LEU PHE THR VAL ALA ILE ASP PRO SEQRES 16 D 216 GLU LEU ASN ASN LYS GLY TYR ILE LEU PRO GLY LEU GLY SEQRES 17 D 216 ASP ALA GLY ASP ARG ALA PHE GLY HET GTP A 301 32 HET MG A 302 1 HET PRP A 303 22 HET MG A 305 1 HET GTP B 301 32 HET MG B 302 1 HET HSX B 306 14 HET POP B 307 9 HET HSX C 306 14 HET POP C 307 9 HET GTP D 301 32 HET GTP D 217 32 HET PRP D 303 22 HET HSX D 306 14 HET MG D 304 1 HETNAM GTP GUANOSINE-5'-TRIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM PRP 1-O-PYROPHOSPHONO-5-O-PHOSPHONO-ALPHA-D-RIBOFURANOSE HETNAM HSX 5-O-PHOSPHONO-ALPHA-D-RIBOFURANOSE HETNAM POP PYROPHOSPHATE 2- HETSYN PRP ALPHA-PHOSPHORIBOSYLPYROPHOSPHORIC ACID; 1-O- HETSYN 2 PRP PYROPHOSPHONO-5-O-PHOSPHONO-ALPHA-D-RIBOSE; 1-O- HETSYN 3 PRP PYROPHOSPHONO-5-O-PHOSPHONO-D-RIBOSE; 1-O- HETSYN 4 PRP PYROPHOSPHONO-5-O-PHOSPHONO-RIBOSE HETSYN HSX 5-O-PHOSPHONO-ALPHA-D-RIBOSE; 5-O-PHOSPHONO-D-RIBOSE; HETSYN 2 HSX 5-O-PHOSPHONO-RIBOSE FORMUL 5 GTP 4(C10 H16 N5 O14 P3) FORMUL 6 MG 4(MG 2+) FORMUL 7 PRP 2(C5 H13 O14 P3) FORMUL 11 HSX 3(C5 H11 O8 P) FORMUL 12 POP 2(H2 O7 P2 2-) FORMUL 20 HOH *34(H2 O) HELIX 1 1 LYS A 8 ASP A 20 1 13 HELIX 2 2 ASP A 24 LEU A 47 1 24 HELIX 3 3 ILE A 67 ASN A 71 5 5 HELIX 4 4 ALA A 81 LYS A 91 1 11 HELIX 5 5 ALA A 146 ALA A 159 1 14 HELIX 6 6 GLU A 173 TYR A 183 1 11 HELIX 7 7 ASP A 209 GLY A 216 1 8 HELIX 8 8 LYS B 8 ASP B 20 1 13 HELIX 9 9 ASP B 24 LEU B 47 1 24 HELIX 10 10 ILE B 67 ASN B 71 5 5 HELIX 11 11 ALA B 81 LEU B 90 1 10 HELIX 12 12 ALA B 146 ALA B 159 1 14 HELIX 13 13 GLU B 173 TYR B 183 1 11 HELIX 14 14 ASP B 209 GLY B 216 1 8 HELIX 15 15 LYS C 8 ASP C 20 1 13 HELIX 16 16 ASP C 24 ASN C 45 1 22 HELIX 17 17 ILE C 67 ASN C 71 5 5 HELIX 18 18 ALA C 81 LEU C 90 1 10 HELIX 19 19 ALA C 146 VAL C 157 1 12 HELIX 20 20 LYS C 158 ASN C 160 5 3 HELIX 21 21 GLU C 173 TYR C 183 1 11 HELIX 22 22 ASP C 209 GLY C 216 1 8 HELIX 23 23 LYS D 8 ASP D 20 1 13 HELIX 24 24 ASP D 24 ASN D 45 1 22 HELIX 25 25 ILE D 67 ASN D 71 5 5 HELIX 26 26 ALA D 81 LEU D 90 1 10 HELIX 27 27 ALA D 146 ALA D 159 1 14 HELIX 28 28 GLU D 173 SER D 181 1 9 HELIX 29 29 ASP D 209 GLY D 216 1 8 SHEET 1 A 7 LEU A 3 VAL A 5 0 SHEET 2 A 7 TYR A 187 THR A 190 1 O LEU A 188 N TYR A 4 SHEET 3 A 7 ARG A 163 VAL A 167 1 N ILE A 166 O PHE A 189 SHEET 4 A 7 ASN A 135 ALA A 139 1 N VAL A 136 O TYR A 165 SHEET 5 A 7 ILE A 73 ILE A 78 1 N ILE A 76 O ILE A 137 SHEET 6 A 7 ALA A 96 SER A 104 1 O GLY A 99 N ASN A 77 SHEET 7 A 7 TYR A 120 LYS A 125 -1 O TYR A 122 N GLY A 102 SHEET 1 B 2 GLU A 53 GLU A 55 0 SHEET 2 B 2 LYS A 61 LYS A 63 -1 O THR A 62 N VAL A 54 SHEET 1 C 3 MET A 142 ILE A 143 0 SHEET 2 C 3 ILE A 170 SER A 172 1 O SER A 172 N ILE A 143 SHEET 3 C 3 ALA A 192 ASP A 194 1 O ALA A 192 N SER A 171 SHEET 1 D 2 GLU A 196 LEU A 197 0 SHEET 2 D 2 ILE A 203 LEU A 204 -1 O LEU A 204 N GLU A 196 SHEET 1 E 7 LEU B 3 VAL B 5 0 SHEET 2 E 7 TYR B 187 THR B 190 1 O LEU B 188 N TYR B 4 SHEET 3 E 7 ARG B 163 VAL B 167 1 N ILE B 166 O PHE B 189 SHEET 4 E 7 ASN B 135 ALA B 139 1 N VAL B 136 O TYR B 165 SHEET 5 E 7 ILE B 73 ILE B 78 1 N ILE B 76 O ILE B 137 SHEET 6 E 7 ARG B 97 SER B 104 1 O GLY B 99 N ASN B 77 SHEET 7 E 7 TYR B 120 LYS B 125 -1 O TYR B 123 N GLY B 102 SHEET 1 F 2 GLU B 50 GLU B 55 0 SHEET 2 F 2 LYS B 61 ASP B 66 -1 O GLY B 64 N VAL B 52 SHEET 1 G 3 MET B 142 ILE B 143 0 SHEET 2 G 3 ILE B 170 SER B 172 1 O SER B 172 N ILE B 143 SHEET 3 G 3 ALA B 192 ASP B 194 1 O ALA B 192 N SER B 171 SHEET 1 H 2 GLU B 196 LEU B 197 0 SHEET 2 H 2 ILE B 203 LEU B 204 -1 O LEU B 204 N GLU B 196 SHEET 1 I 7 LEU C 3 VAL C 5 0 SHEET 2 I 7 TYR C 187 THR C 190 1 O LEU C 188 N TYR C 4 SHEET 3 I 7 ARG C 163 VAL C 167 1 N ILE C 166 O PHE C 189 SHEET 4 I 7 ASN C 135 ALA C 139 1 N VAL C 136 O TYR C 165 SHEET 5 I 7 ILE C 73 ILE C 78 1 N ILE C 76 O ILE C 137 SHEET 6 I 7 ARG C 97 SER C 104 1 O GLY C 99 N ASN C 77 SHEET 7 I 7 TYR C 120 LYS C 125 -1 O LYS C 125 N VAL C 100 SHEET 1 J 2 GLU C 50 THR C 56 0 SHEET 2 J 2 VAL C 60 ASP C 66 -1 O GLY C 64 N VAL C 52 SHEET 1 K 3 MET C 142 ILE C 143 0 SHEET 2 K 3 ILE C 170 SER C 172 1 O SER C 172 N ILE C 143 SHEET 3 K 3 ALA C 192 ASP C 194 1 O ALA C 192 N SER C 171 SHEET 1 L 2 GLU C 196 LEU C 197 0 SHEET 2 L 2 ILE C 203 LEU C 204 -1 O LEU C 204 N GLU C 196 SHEET 1 M 7 LEU D 3 VAL D 5 0 SHEET 2 M 7 TYR D 187 THR D 190 1 O LEU D 188 N TYR D 4 SHEET 3 M 7 ARG D 163 VAL D 167 1 N ILE D 166 O PHE D 189 SHEET 4 M 7 ASN D 135 ALA D 139 1 N VAL D 136 O TYR D 165 SHEET 5 M 7 ILE D 73 ILE D 78 1 N VAL D 74 O ILE D 137 SHEET 6 M 7 ARG D 97 ARG D 105 1 O GLY D 99 N ILE D 75 SHEET 7 M 7 VAL D 119 LYS D 125 -1 O LYS D 125 N VAL D 100 SHEET 1 N 2 GLU D 50 GLU D 55 0 SHEET 2 N 2 LYS D 61 ASP D 66 -1 O GLY D 64 N VAL D 52 SHEET 1 O 3 MET D 142 ILE D 143 0 SHEET 2 O 3 ILE D 170 SER D 172 1 O SER D 172 N ILE D 143 SHEET 3 O 3 ALA D 192 ASP D 194 1 O ALA D 192 N SER D 171 SHEET 1 P 2 GLU D 196 LEU D 197 0 SHEET 2 P 2 ILE D 203 LEU D 204 -1 O LEU D 204 N GLU D 196 LINK O HOH A 217 MG MG A 305 1555 1555 2.24 LINK O HOH A 218 MG MG A 305 1555 1555 2.21 LINK O HOH A 229 MG MG A 302 1555 1555 2.06 LINK O1B GTP A 301 MG MG A 302 1555 1555 1.95 LINK O1A GTP A 301 MG MG A 302 1555 1555 1.99 LINK MG MG A 302 O1B GTP D 217 1555 1555 2.11 LINK MG MG A 302 O1A GTP D 217 1555 1555 1.97 LINK O3A PRP A 303 MG MG A 305 1555 1555 2.25 LINK O1B PRP A 303 MG MG A 305 1555 1555 2.32 LINK O2B PRP A 303 MG MG A 305 1555 1555 2.23 LINK O HOH B 218 MG MG B 302 1555 1555 2.08 LINK O1B GTP B 301 MG MG B 302 1555 1555 2.10 LINK O1A GTP B 301 MG MG B 302 1555 1555 1.98 LINK MG MG B 302 O HOH D 218 1555 1555 1.93 LINK MG MG B 302 O1A GTP D 301 1555 1555 2.06 LINK MG MG B 302 O1B GTP D 301 1555 1555 2.02 LINK O HOH D 219 MG MG D 304 1555 1555 2.11 LINK O HOH D 220 MG MG D 304 1555 1555 2.03 LINK O1B PRP D 303 MG MG D 304 1555 1555 1.88 LINK O3B PRP D 303 MG MG D 304 1555 1555 2.20 CISPEP 1 LEU A 204 PRO A 205 0 0.22 CISPEP 2 LEU B 204 PRO B 205 0 0.48 CISPEP 3 LEU C 204 PRO C 205 0 -0.18 CISPEP 4 LEU D 204 PRO D 205 0 -0.11 CRYST1 60.038 98.758 73.528 90.00 92.80 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016656 0.000000 0.000815 0.00000 SCALE2 0.000000 0.010126 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013617 0.00000