data_3G9R # _entry.id 3G9R # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.378 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3G9R pdb_00003g9r 10.2210/pdb3g9r/pdb RCSB RCSB051601 ? ? WWPDB D_1000051601 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3G9R _pdbx_database_status.recvd_initial_deposition_date 2009-02-13 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Liu, J.' 1 'Lu, M.' 2 # _citation.id primary _citation.title 'Structure of the HIV-1 gp41 Membrane-Proximal Ectodomain Region in a Putative Prefusion Conformation.' _citation.journal_abbrev Biochemistry _citation.journal_volume 48 _citation.page_first 2915 _citation.page_last 2923 _citation.year 2009 _citation.journal_id_ASTM BICHAW _citation.country US _citation.journal_id_ISSN 0006-2960 _citation.journal_id_CSD 0033 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 19226163 _citation.pdbx_database_id_DOI 10.1021/bi802303b # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Liu, J.' 1 ? primary 'Deng, Y.' 2 ? primary 'Dey, A.' 3 ? primary 'Moore, J.' 4 ? primary 'Lu, M.' 5 ? # _cell.entry_id 3G9R _cell.length_a 42.527 _cell.length_b 48.157 _cell.length_c 81.782 _cell.angle_alpha 90.00 _cell.angle_beta 95.38 _cell.angle_gamma 90.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3G9R _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Fusion complex of HIV-1 Envelope glycoprotein and Saccharomyces cerevisiae General control protein GCN4' 5415.377 6 ? 'L27K, N30I, Y31K, H32R, L33I, V37I, A38K, L40I' 'C-terminal MPER of HIV-1 GP41, Leucine-zipper domain of GCN4' ? 2 non-polymer syn 'PHOSPHATE ION' 94.971 5 ? ? ? ? 3 non-polymer syn '(4S)-2-METHYL-2,4-PENTANEDIOL' 118.174 8 ? ? ? ? 4 water nat water 18.015 78 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ELDKWASLWNWFNITNWLWYIKIEELKSKIKRIENEIKRIKK _entity_poly.pdbx_seq_one_letter_code_can ELDKWASLWNWFNITNWLWYIKIEELKSKIKRIENEIKRIKK _entity_poly.pdbx_strand_id A,B,C,D,E,F _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLU n 1 2 LEU n 1 3 ASP n 1 4 LYS n 1 5 TRP n 1 6 ALA n 1 7 SER n 1 8 LEU n 1 9 TRP n 1 10 ASN n 1 11 TRP n 1 12 PHE n 1 13 ASN n 1 14 ILE n 1 15 THR n 1 16 ASN n 1 17 TRP n 1 18 LEU n 1 19 TRP n 1 20 TYR n 1 21 ILE n 1 22 LYS n 1 23 ILE n 1 24 GLU n 1 25 GLU n 1 26 LEU n 1 27 LYS n 1 28 SER n 1 29 LYS n 1 30 ILE n 1 31 LYS n 1 32 ARG n 1 33 ILE n 1 34 GLU n 1 35 ASN n 1 36 GLU n 1 37 ILE n 1 38 LYS n 1 39 ARG n 1 40 ILE n 1 41 LYS n 1 42 LYS n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample ? 1 23 ? ? ? ? ? ? ? ? ? 'Human immunodeficiency virus 1' 11676 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 1 2 sample ? 24 42 ? ? ? ? ? ? ? ? ? 'Saccharomyces cerevisiae' 4932 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP Q4QX39_9HIV1 Q4QX39 1 ELDKWASLWNWFNITNWLWYIKI 655 ? 2 UNP GCN4_YEAST P03069 1 EELLSKNYHLENEVARLKK 258 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3G9R A 1 ? 23 ? Q4QX39 655 ? 677 ? 1 23 2 2 3G9R A 24 ? 42 ? P03069 258 ? 276 ? 24 42 3 1 3G9R B 1 ? 23 ? Q4QX39 655 ? 677 ? 1 23 4 2 3G9R B 24 ? 42 ? P03069 258 ? 276 ? 24 42 5 1 3G9R C 1 ? 23 ? Q4QX39 655 ? 677 ? 1 23 6 2 3G9R C 24 ? 42 ? P03069 258 ? 276 ? 24 42 7 1 3G9R D 1 ? 23 ? Q4QX39 655 ? 677 ? 1 23 8 2 3G9R D 24 ? 42 ? P03069 258 ? 276 ? 24 42 9 1 3G9R E 1 ? 23 ? Q4QX39 655 ? 677 ? 1 23 10 2 3G9R E 24 ? 42 ? P03069 258 ? 276 ? 24 42 11 1 3G9R F 1 ? 23 ? Q4QX39 655 ? 677 ? 1 23 12 2 3G9R F 24 ? 42 ? P03069 258 ? 276 ? 24 42 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 2 3G9R LYS A 27 ? UNP P03069 LEU 261 'engineered mutation' 27 1 2 3G9R ILE A 30 ? UNP P03069 ASN 264 'engineered mutation' 30 2 2 3G9R LYS A 31 ? UNP P03069 TYR 265 'engineered mutation' 31 3 2 3G9R ARG A 32 ? UNP P03069 HIS 266 'engineered mutation' 32 4 2 3G9R ILE A 33 ? UNP P03069 LEU 267 'engineered mutation' 33 5 2 3G9R ILE A 37 ? UNP P03069 VAL 271 'engineered mutation' 37 6 2 3G9R LYS A 38 ? UNP P03069 ALA 272 'engineered mutation' 38 7 2 3G9R ILE A 40 ? UNP P03069 LEU 274 'engineered mutation' 40 8 4 3G9R LYS B 27 ? UNP P03069 LEU 261 'engineered mutation' 27 9 4 3G9R ILE B 30 ? UNP P03069 ASN 264 'engineered mutation' 30 10 4 3G9R LYS B 31 ? UNP P03069 TYR 265 'engineered mutation' 31 11 4 3G9R ARG B 32 ? UNP P03069 HIS 266 'engineered mutation' 32 12 4 3G9R ILE B 33 ? UNP P03069 LEU 267 'engineered mutation' 33 13 4 3G9R ILE B 37 ? UNP P03069 VAL 271 'engineered mutation' 37 14 4 3G9R LYS B 38 ? UNP P03069 ALA 272 'engineered mutation' 38 15 4 3G9R ILE B 40 ? UNP P03069 LEU 274 'engineered mutation' 40 16 6 3G9R LYS C 27 ? UNP P03069 LEU 261 'engineered mutation' 27 17 6 3G9R ILE C 30 ? UNP P03069 ASN 264 'engineered mutation' 30 18 6 3G9R LYS C 31 ? UNP P03069 TYR 265 'engineered mutation' 31 19 6 3G9R ARG C 32 ? UNP P03069 HIS 266 'engineered mutation' 32 20 6 3G9R ILE C 33 ? UNP P03069 LEU 267 'engineered mutation' 33 21 6 3G9R ILE C 37 ? UNP P03069 VAL 271 'engineered mutation' 37 22 6 3G9R LYS C 38 ? UNP P03069 ALA 272 'engineered mutation' 38 23 6 3G9R ILE C 40 ? UNP P03069 LEU 274 'engineered mutation' 40 24 8 3G9R LYS D 27 ? UNP P03069 LEU 261 'engineered mutation' 27 25 8 3G9R ILE D 30 ? UNP P03069 ASN 264 'engineered mutation' 30 26 8 3G9R LYS D 31 ? UNP P03069 TYR 265 'engineered mutation' 31 27 8 3G9R ARG D 32 ? UNP P03069 HIS 266 'engineered mutation' 32 28 8 3G9R ILE D 33 ? UNP P03069 LEU 267 'engineered mutation' 33 29 8 3G9R ILE D 37 ? UNP P03069 VAL 271 'engineered mutation' 37 30 8 3G9R LYS D 38 ? UNP P03069 ALA 272 'engineered mutation' 38 31 8 3G9R ILE D 40 ? UNP P03069 LEU 274 'engineered mutation' 40 32 10 3G9R LYS E 27 ? UNP P03069 LEU 261 'engineered mutation' 27 33 10 3G9R ILE E 30 ? UNP P03069 ASN 264 'engineered mutation' 30 34 10 3G9R LYS E 31 ? UNP P03069 TYR 265 'engineered mutation' 31 35 10 3G9R ARG E 32 ? UNP P03069 HIS 266 'engineered mutation' 32 36 10 3G9R ILE E 33 ? UNP P03069 LEU 267 'engineered mutation' 33 37 10 3G9R ILE E 37 ? UNP P03069 VAL 271 'engineered mutation' 37 38 10 3G9R LYS E 38 ? UNP P03069 ALA 272 'engineered mutation' 38 39 10 3G9R ILE E 40 ? UNP P03069 LEU 274 'engineered mutation' 40 40 12 3G9R LYS F 27 ? UNP P03069 LEU 261 'engineered mutation' 27 41 12 3G9R ILE F 30 ? UNP P03069 ASN 264 'engineered mutation' 30 42 12 3G9R LYS F 31 ? UNP P03069 TYR 265 'engineered mutation' 31 43 12 3G9R ARG F 32 ? UNP P03069 HIS 266 'engineered mutation' 32 44 12 3G9R ILE F 33 ? UNP P03069 LEU 267 'engineered mutation' 33 45 12 3G9R ILE F 37 ? UNP P03069 VAL 271 'engineered mutation' 37 46 12 3G9R LYS F 38 ? UNP P03069 ALA 272 'engineered mutation' 38 47 12 3G9R ILE F 40 ? UNP P03069 LEU 274 'engineered mutation' 40 48 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MPD non-polymer . '(4S)-2-METHYL-2,4-PENTANEDIOL' ? 'C6 H14 O2' 118.174 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PO4 non-polymer . 'PHOSPHATE ION' ? 'O4 P -3' 94.971 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3G9R _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.57 _exptl_crystal.density_percent_sol 52.06 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298.0 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.6 _exptl_crystal_grow.pdbx_details '0.1M sodium HEPES, 0.1M ammonium dihydrogenphosphate, 50% MPD, pH 7.6, VAPOR DIFFUSION, HANGING DROP, temperature 298.0K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 95 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4' _diffrn_detector.pdbx_collection_date 2003-03-22 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9791 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X4A' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X4A _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9791 # _reflns.entry_id 3G9R _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F 0.0 _reflns.d_resolution_low 19.6 _reflns.d_resolution_high 2.00 _reflns.number_obs 22010 _reflns.number_all 22010 _reflns.percent_possible_obs 98.0 _reflns.pdbx_Rmerge_I_obs 0.049 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 14.1 _reflns.B_iso_Wilson_estimate 39.2 _reflns.pdbx_redundancy 3.7 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.00 _reflns_shell.d_res_low 2.07 _reflns_shell.percent_possible_all 97.5 _reflns_shell.Rmerge_I_obs 0.528 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.3 _reflns_shell.pdbx_redundancy 3.6 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 2171 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3G9R _refine.ls_number_reflns_obs 22010 _refine.ls_number_reflns_all 22010 _refine.pdbx_ls_sigma_I 0.0 _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 19.55 _refine.ls_d_res_high 2.00 _refine.ls_percent_reflns_obs 98.0 _refine.ls_R_factor_obs 0.21636 _refine.ls_R_factor_all 0.21636 _refine.ls_R_factor_R_work 0.21347 _refine.ls_R_factor_R_free 0.26908 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 1110 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.955 _refine.correlation_coeff_Fo_to_Fc_free 0.928 _refine.B_iso_mean 57.436 _refine.aniso_B[1][1] 0.93 _refine.aniso_B[2][2] 2.96 _refine.aniso_B[3][3] -4.00 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] -0.58 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 1GCM' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model 'Isotropic with TLS groups assigned for each protein chain' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.202 _refine.pdbx_overall_ESU_R_Free 0.187 _refine.overall_SU_ML 0.155 _refine.overall_SU_B 11.784 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2241 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 25 _refine_hist.number_atoms_solvent 142 _refine_hist.number_atoms_total 2408 _refine_hist.d_res_high 2.00 _refine_hist.d_res_low 19.55 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.026 0.022 ? 2383 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2.029 1.944 ? 3215 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 4.795 5.000 ? 238 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 35.858 23.945 ? 109 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 18.903 15.000 ? 494 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 18.190 15.000 ? 12 'X-RAY DIFFRACTION' ? r_chiral_restr 0.139 0.200 ? 321 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.010 0.020 ? 1646 'X-RAY DIFFRACTION' ? r_nbd_refined 0.237 0.200 ? 1029 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.327 0.200 ? 1622 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.192 0.200 ? 72 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.287 0.200 ? 62 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.289 0.200 ? 18 'X-RAY DIFFRACTION' ? r_mcbond_it 1.384 1.500 ? 1277 'X-RAY DIFFRACTION' ? r_mcangle_it 2.125 2.000 ? 1988 'X-RAY DIFFRACTION' ? r_scbond_it 3.441 3.000 ? 1418 'X-RAY DIFFRACTION' ? r_scangle_it 4.446 4.500 ? 1227 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.000 _refine_ls_shell.d_res_low 2.052 _refine_ls_shell.number_reflns_R_work 1472 _refine_ls_shell.R_factor_R_work 0.288 _refine_ls_shell.percent_reflns_obs 96.25 _refine_ls_shell.R_factor_R_free 0.336 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 70 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs 1542 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3G9R _struct.title 'Structure of the HIV-1 gp41 Membrane-Proximal Ectodomain Region in a Putative Prefusion Conformation' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3G9R _struct_keywords.pdbx_keywords 'VIRAL PROTEIN' _struct_keywords.text ;gp41, MPER, HIV-1, membrane fusion, AIDS, Apoptosis, Cell membrane, Coiled coil, Envelope protein, Fusion protein, Host-virus interaction, VIRAL PROTEIN ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 1 ? F N N 1 ? G N N 2 ? H N N 2 ? I N N 3 ? J N N 3 ? K N N 3 ? L N N 3 ? M N N 2 ? N N N 3 ? O N N 2 ? P N N 3 ? Q N N 2 ? R N N 3 ? S N N 3 ? T N N 4 ? U N N 4 ? V N N 4 ? W N N 4 ? X N N 4 ? Y N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLU A 1 ? LYS A 42 ? GLU A 1 LYS A 42 1 ? 42 HELX_P HELX_P2 2 ASP B 3 ? LYS B 42 ? ASP B 3 LYS B 42 1 ? 40 HELX_P HELX_P3 3 ASP C 3 ? LYS C 41 ? ASP C 3 LYS C 41 1 ? 39 HELX_P HELX_P4 4 ASP D 3 ? LYS D 42 ? ASP D 3 LYS D 42 1 ? 40 HELX_P HELX_P5 5 ASP E 3 ? LYS E 42 ? ASP E 3 LYS E 42 1 ? 40 HELX_P HELX_P6 6 ASP F 3 ? LYS F 42 ? ASP F 3 LYS F 42 1 ? 40 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A PO4 43 ? 1 'BINDING SITE FOR RESIDUE PO4 A 43' AC2 Software A PO4 44 ? 2 'BINDING SITE FOR RESIDUE PO4 A 44' AC3 Software A MPD 45 ? 1 'BINDING SITE FOR RESIDUE MPD A 45' AC4 Software A MPD 46 ? 8 'BINDING SITE FOR RESIDUE MPD A 46' AC5 Software A MPD 47 ? 3 'BINDING SITE FOR RESIDUE MPD A 47' AC6 Software A MPD 48 ? 1 'BINDING SITE FOR RESIDUE MPD A 48' AC7 Software B PO4 43 ? 1 'BINDING SITE FOR RESIDUE PO4 B 43' AC8 Software B MPD 44 ? 4 'BINDING SITE FOR RESIDUE MPD B 44' AC9 Software C PO4 43 ? 2 'BINDING SITE FOR RESIDUE PO4 C 43' BC1 Software C MPD 44 ? 1 'BINDING SITE FOR RESIDUE MPD C 44' BC2 Software D PO4 43 ? 3 'BINDING SITE FOR RESIDUE PO4 D 43' BC3 Software E MPD 43 ? 11 'BINDING SITE FOR RESIDUE MPD E 43' BC4 Software E MPD 44 ? 3 'BINDING SITE FOR RESIDUE MPD E 44' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 1 ARG A 32 ? ARG A 32 . ? 1_555 ? 2 AC2 2 ARG A 39 ? ARG A 39 . ? 1_555 ? 3 AC2 2 LYS A 42 ? LYS A 42 . ? 1_555 ? 4 AC3 1 ASN A 10 ? ASN A 10 . ? 1_555 ? 5 AC4 8 PHE A 12 ? PHE A 12 . ? 1_555 ? 6 AC4 8 THR A 15 ? THR A 15 . ? 1_555 ? 7 AC4 8 ASN A 16 ? ASN A 16 . ? 1_555 ? 8 AC4 8 ASN B 16 ? ASN B 16 . ? 1_555 ? 9 AC4 8 PHE C 12 ? PHE C 12 . ? 1_555 ? 10 AC4 8 THR C 15 ? THR C 15 . ? 1_555 ? 11 AC4 8 ASN C 16 ? ASN C 16 . ? 1_555 ? 12 AC4 8 TRP C 19 ? TRP C 19 . ? 1_555 ? 13 AC5 3 LYS A 27 ? LYS A 27 . ? 1_555 ? 14 AC5 3 LYS A 31 ? LYS A 31 . ? 1_555 ? 15 AC5 3 LYS E 27 ? LYS E 27 . ? 1_655 ? 16 AC6 1 GLU A 1 ? GLU A 1 . ? 1_555 ? 17 AC7 1 ARG B 39 ? ARG B 39 . ? 1_555 ? 18 AC8 4 LYS A 22 ? LYS A 22 . ? 1_555 ? 19 AC8 4 LYS B 27 ? LYS B 27 . ? 1_555 ? 20 AC8 4 LYS E 22 ? LYS E 22 . ? 1_555 ? 21 AC8 4 LYS F 27 ? LYS F 27 . ? 1_555 ? 22 AC9 2 ARG C 39 ? ARG C 39 . ? 1_555 ? 23 AC9 2 LYS C 42 ? LYS C 42 . ? 1_555 ? 24 BC1 1 TRP D 11 ? TRP D 11 . ? 1_655 ? 25 BC2 3 TRP A 9 ? TRP A 9 . ? 1_455 ? 26 BC2 3 SER C 7 ? SER C 7 . ? 1_455 ? 27 BC2 3 TRP C 11 ? TRP C 11 . ? 1_455 ? 28 BC3 11 PHE D 12 ? PHE D 12 . ? 1_555 ? 29 BC3 11 THR D 15 ? THR D 15 . ? 1_555 ? 30 BC3 11 ASN D 16 ? ASN D 16 . ? 1_555 ? 31 BC3 11 TRP D 19 ? TRP D 19 . ? 1_555 ? 32 BC3 11 PHE E 12 ? PHE E 12 . ? 1_555 ? 33 BC3 11 ASN E 16 ? ASN E 16 . ? 1_555 ? 34 BC3 11 TRP E 19 ? TRP E 19 . ? 1_555 ? 35 BC3 11 TRP F 11 ? TRP F 11 . ? 1_555 ? 36 BC3 11 THR F 15 ? THR F 15 . ? 1_555 ? 37 BC3 11 ASN F 16 ? ASN F 16 . ? 1_555 ? 38 BC3 11 TRP F 19 ? TRP F 19 . ? 1_555 ? 39 BC4 3 TRP C 17 ? TRP C 17 . ? 1_455 ? 40 BC4 3 TRP D 11 ? TRP D 11 . ? 1_555 ? 41 BC4 3 ASN E 13 ? ASN E 13 . ? 1_555 ? # _database_PDB_matrix.entry_id 3G9R _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3G9R _atom_sites.fract_transf_matrix[1][1] 0.023514 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.002214 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.020765 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012282 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLU 1 1 1 GLU GLU A . n A 1 2 LEU 2 2 2 LEU LEU A . n A 1 3 ASP 3 3 3 ASP ASP A . n A 1 4 LYS 4 4 4 LYS LYS A . n A 1 5 TRP 5 5 5 TRP TRP A . n A 1 6 ALA 6 6 6 ALA ALA A . n A 1 7 SER 7 7 7 SER SER A . n A 1 8 LEU 8 8 8 LEU LEU A . n A 1 9 TRP 9 9 9 TRP TRP A . n A 1 10 ASN 10 10 10 ASN ASN A . n A 1 11 TRP 11 11 11 TRP TRP A . n A 1 12 PHE 12 12 12 PHE PHE A . n A 1 13 ASN 13 13 13 ASN ASN A . n A 1 14 ILE 14 14 14 ILE ILE A . n A 1 15 THR 15 15 15 THR THR A . n A 1 16 ASN 16 16 16 ASN ASN A . n A 1 17 TRP 17 17 17 TRP TRP A . n A 1 18 LEU 18 18 18 LEU LEU A . n A 1 19 TRP 19 19 19 TRP TRP A . n A 1 20 TYR 20 20 20 TYR TYR A . n A 1 21 ILE 21 21 21 ILE ILE A . n A 1 22 LYS 22 22 22 LYS LYS A . n A 1 23 ILE 23 23 23 ILE ILE A . n A 1 24 GLU 24 24 24 GLU GLU A . n A 1 25 GLU 25 25 25 GLU GLU A . n A 1 26 LEU 26 26 26 LEU LEU A . n A 1 27 LYS 27 27 27 LYS LYS A . n A 1 28 SER 28 28 28 SER SER A . n A 1 29 LYS 29 29 29 LYS LYS A . n A 1 30 ILE 30 30 30 ILE ILE A . n A 1 31 LYS 31 31 31 LYS LYS A . n A 1 32 ARG 32 32 32 ARG ARG A . n A 1 33 ILE 33 33 33 ILE ILE A . n A 1 34 GLU 34 34 34 GLU GLU A . n A 1 35 ASN 35 35 35 ASN ASN A . n A 1 36 GLU 36 36 36 GLU GLU A . n A 1 37 ILE 37 37 37 ILE ILE A . n A 1 38 LYS 38 38 38 LYS LYS A . n A 1 39 ARG 39 39 39 ARG ARG A . n A 1 40 ILE 40 40 40 ILE ILE A . n A 1 41 LYS 41 41 41 LYS LYS A . n A 1 42 LYS 42 42 42 LYS LYS A . n B 1 1 GLU 1 1 ? ? ? B . n B 1 2 LEU 2 2 ? ? ? B . n B 1 3 ASP 3 3 3 ASP ASP B . n B 1 4 LYS 4 4 4 LYS LYS B . n B 1 5 TRP 5 5 5 TRP TRP B . n B 1 6 ALA 6 6 6 ALA ALA B . n B 1 7 SER 7 7 7 SER SER B . n B 1 8 LEU 8 8 8 LEU LEU B . n B 1 9 TRP 9 9 9 TRP TRP B . n B 1 10 ASN 10 10 10 ASN ASN B . n B 1 11 TRP 11 11 11 TRP TRP B . n B 1 12 PHE 12 12 12 PHE PHE B . n B 1 13 ASN 13 13 13 ASN ASN B . n B 1 14 ILE 14 14 14 ILE ILE B . n B 1 15 THR 15 15 15 THR THR B . n B 1 16 ASN 16 16 16 ASN ASN B . n B 1 17 TRP 17 17 17 TRP TRP B . n B 1 18 LEU 18 18 18 LEU LEU B . n B 1 19 TRP 19 19 19 TRP TRP B . n B 1 20 TYR 20 20 20 TYR TYR B . n B 1 21 ILE 21 21 21 ILE ILE B . n B 1 22 LYS 22 22 22 LYS LYS B . n B 1 23 ILE 23 23 23 ILE ILE B . n B 1 24 GLU 24 24 24 GLU GLU B . n B 1 25 GLU 25 25 25 GLU GLU B . n B 1 26 LEU 26 26 26 LEU LEU B . n B 1 27 LYS 27 27 27 LYS LYS B . n B 1 28 SER 28 28 28 SER SER B . n B 1 29 LYS 29 29 29 LYS LYS B . n B 1 30 ILE 30 30 30 ILE ILE B . n B 1 31 LYS 31 31 31 LYS LYS B . n B 1 32 ARG 32 32 32 ARG ARG B . n B 1 33 ILE 33 33 33 ILE ILE B . n B 1 34 GLU 34 34 34 GLU GLU B . n B 1 35 ASN 35 35 35 ASN ASN B . n B 1 36 GLU 36 36 36 GLU GLU B . n B 1 37 ILE 37 37 37 ILE ILE B . n B 1 38 LYS 38 38 38 LYS LYS B . n B 1 39 ARG 39 39 39 ARG ARG B . n B 1 40 ILE 40 40 40 ILE ILE B . n B 1 41 LYS 41 41 41 LYS LYS B . n B 1 42 LYS 42 42 42 LYS LYS B . n C 1 1 GLU 1 1 ? ? ? C . n C 1 2 LEU 2 2 ? ? ? C . n C 1 3 ASP 3 3 3 ASP ASP C . n C 1 4 LYS 4 4 4 LYS LYS C . n C 1 5 TRP 5 5 5 TRP TRP C . n C 1 6 ALA 6 6 6 ALA ALA C . n C 1 7 SER 7 7 7 SER SER C . n C 1 8 LEU 8 8 8 LEU LEU C . n C 1 9 TRP 9 9 9 TRP TRP C . n C 1 10 ASN 10 10 10 ASN ASN C . n C 1 11 TRP 11 11 11 TRP TRP C . n C 1 12 PHE 12 12 12 PHE PHE C . n C 1 13 ASN 13 13 13 ASN ASN C . n C 1 14 ILE 14 14 14 ILE ILE C . n C 1 15 THR 15 15 15 THR THR C . n C 1 16 ASN 16 16 16 ASN ASN C . n C 1 17 TRP 17 17 17 TRP TRP C . n C 1 18 LEU 18 18 18 LEU LEU C . n C 1 19 TRP 19 19 19 TRP TRP C . n C 1 20 TYR 20 20 20 TYR TYR C . n C 1 21 ILE 21 21 21 ILE ILE C . n C 1 22 LYS 22 22 22 LYS LYS C . n C 1 23 ILE 23 23 23 ILE ILE C . n C 1 24 GLU 24 24 24 GLU GLU C . n C 1 25 GLU 25 25 25 GLU GLU C . n C 1 26 LEU 26 26 26 LEU LEU C . n C 1 27 LYS 27 27 27 LYS LYS C . n C 1 28 SER 28 28 28 SER SER C . n C 1 29 LYS 29 29 29 LYS LYS C . n C 1 30 ILE 30 30 30 ILE ILE C . n C 1 31 LYS 31 31 31 LYS LYS C . n C 1 32 ARG 32 32 32 ARG ARG C . n C 1 33 ILE 33 33 33 ILE ILE C . n C 1 34 GLU 34 34 34 GLU GLU C . n C 1 35 ASN 35 35 35 ASN ASN C . n C 1 36 GLU 36 36 36 GLU GLU C . n C 1 37 ILE 37 37 37 ILE ILE C . n C 1 38 LYS 38 38 38 LYS LYS C . n C 1 39 ARG 39 39 39 ARG ARG C . n C 1 40 ILE 40 40 40 ILE ILE C . n C 1 41 LYS 41 41 41 LYS LYS C . n C 1 42 LYS 42 42 42 LYS LYS C . n D 1 1 GLU 1 1 ? ? ? D . n D 1 2 LEU 2 2 2 LEU LEU D . n D 1 3 ASP 3 3 3 ASP ASP D . n D 1 4 LYS 4 4 4 LYS LYS D . n D 1 5 TRP 5 5 5 TRP TRP D . n D 1 6 ALA 6 6 6 ALA ALA D . n D 1 7 SER 7 7 7 SER SER D . n D 1 8 LEU 8 8 8 LEU LEU D . n D 1 9 TRP 9 9 9 TRP TRP D . n D 1 10 ASN 10 10 10 ASN ASN D . n D 1 11 TRP 11 11 11 TRP TRP D . n D 1 12 PHE 12 12 12 PHE PHE D . n D 1 13 ASN 13 13 13 ASN ASN D . n D 1 14 ILE 14 14 14 ILE ILE D . n D 1 15 THR 15 15 15 THR THR D . n D 1 16 ASN 16 16 16 ASN ASN D . n D 1 17 TRP 17 17 17 TRP TRP D . n D 1 18 LEU 18 18 18 LEU LEU D . n D 1 19 TRP 19 19 19 TRP TRP D . n D 1 20 TYR 20 20 20 TYR TYR D . n D 1 21 ILE 21 21 21 ILE ILE D . n D 1 22 LYS 22 22 22 LYS LYS D . n D 1 23 ILE 23 23 23 ILE ILE D . n D 1 24 GLU 24 24 24 GLU GLU D . n D 1 25 GLU 25 25 25 GLU GLU D . n D 1 26 LEU 26 26 26 LEU LEU D . n D 1 27 LYS 27 27 27 LYS LYS D . n D 1 28 SER 28 28 28 SER SER D . n D 1 29 LYS 29 29 29 LYS LYS D . n D 1 30 ILE 30 30 30 ILE ILE D . n D 1 31 LYS 31 31 31 LYS LYS D . n D 1 32 ARG 32 32 32 ARG ARG D . n D 1 33 ILE 33 33 33 ILE ILE D . n D 1 34 GLU 34 34 34 GLU GLU D . n D 1 35 ASN 35 35 35 ASN ASN D . n D 1 36 GLU 36 36 36 GLU GLU D . n D 1 37 ILE 37 37 37 ILE ILE D . n D 1 38 LYS 38 38 38 LYS LYS D . n D 1 39 ARG 39 39 39 ARG ARG D . n D 1 40 ILE 40 40 40 ILE ILE D . n D 1 41 LYS 41 41 41 LYS LYS D . n D 1 42 LYS 42 42 42 LYS LYS D . n E 1 1 GLU 1 1 ? ? ? E . n E 1 2 LEU 2 2 ? ? ? E . n E 1 3 ASP 3 3 3 ASP ASP E . n E 1 4 LYS 4 4 4 LYS LYS E . n E 1 5 TRP 5 5 5 TRP TRP E . n E 1 6 ALA 6 6 6 ALA ALA E . n E 1 7 SER 7 7 7 SER SER E . n E 1 8 LEU 8 8 8 LEU LEU E . n E 1 9 TRP 9 9 9 TRP TRP E . n E 1 10 ASN 10 10 10 ASN ASN E . n E 1 11 TRP 11 11 11 TRP TRP E . n E 1 12 PHE 12 12 12 PHE PHE E . n E 1 13 ASN 13 13 13 ASN ASN E . n E 1 14 ILE 14 14 14 ILE ILE E . n E 1 15 THR 15 15 15 THR THR E . n E 1 16 ASN 16 16 16 ASN ASN E . n E 1 17 TRP 17 17 17 TRP TRP E . n E 1 18 LEU 18 18 18 LEU LEU E . n E 1 19 TRP 19 19 19 TRP TRP E . n E 1 20 TYR 20 20 20 TYR TYR E . n E 1 21 ILE 21 21 21 ILE ILE E . n E 1 22 LYS 22 22 22 LYS LYS E . n E 1 23 ILE 23 23 23 ILE ILE E . n E 1 24 GLU 24 24 24 GLU GLU E . n E 1 25 GLU 25 25 25 GLU GLU E . n E 1 26 LEU 26 26 26 LEU LEU E . n E 1 27 LYS 27 27 27 LYS LYS E . n E 1 28 SER 28 28 28 SER SER E . n E 1 29 LYS 29 29 29 LYS LYS E . n E 1 30 ILE 30 30 30 ILE ILE E . n E 1 31 LYS 31 31 31 LYS LYS E . n E 1 32 ARG 32 32 32 ARG ARG E . n E 1 33 ILE 33 33 33 ILE ILE E . n E 1 34 GLU 34 34 34 GLU GLU E . n E 1 35 ASN 35 35 35 ASN ASN E . n E 1 36 GLU 36 36 36 GLU GLU E . n E 1 37 ILE 37 37 37 ILE ILE E . n E 1 38 LYS 38 38 38 LYS LYS E . n E 1 39 ARG 39 39 39 ARG ARG E . n E 1 40 ILE 40 40 40 ILE ILE E . n E 1 41 LYS 41 41 41 LYS LYS E . n E 1 42 LYS 42 42 42 LYS LYS E . n F 1 1 GLU 1 1 ? ? ? F . n F 1 2 LEU 2 2 2 LEU LEU F . n F 1 3 ASP 3 3 3 ASP ASP F . n F 1 4 LYS 4 4 4 LYS LYS F . n F 1 5 TRP 5 5 5 TRP TRP F . n F 1 6 ALA 6 6 6 ALA ALA F . n F 1 7 SER 7 7 7 SER SER F . n F 1 8 LEU 8 8 8 LEU LEU F . n F 1 9 TRP 9 9 9 TRP TRP F . n F 1 10 ASN 10 10 10 ASN ASN F . n F 1 11 TRP 11 11 11 TRP TRP F . n F 1 12 PHE 12 12 12 PHE PHE F . n F 1 13 ASN 13 13 13 ASN ASN F . n F 1 14 ILE 14 14 14 ILE ILE F . n F 1 15 THR 15 15 15 THR THR F . n F 1 16 ASN 16 16 16 ASN ASN F . n F 1 17 TRP 17 17 17 TRP TRP F . n F 1 18 LEU 18 18 18 LEU LEU F . n F 1 19 TRP 19 19 19 TRP TRP F . n F 1 20 TYR 20 20 20 TYR TYR F . n F 1 21 ILE 21 21 21 ILE ILE F . n F 1 22 LYS 22 22 22 LYS LYS F . n F 1 23 ILE 23 23 23 ILE ILE F . n F 1 24 GLU 24 24 24 GLU GLU F . n F 1 25 GLU 25 25 25 GLU GLU F . n F 1 26 LEU 26 26 26 LEU LEU F . n F 1 27 LYS 27 27 27 LYS LYS F . n F 1 28 SER 28 28 28 SER SER F . n F 1 29 LYS 29 29 29 LYS LYS F . n F 1 30 ILE 30 30 30 ILE ILE F . n F 1 31 LYS 31 31 31 LYS LYS F . n F 1 32 ARG 32 32 32 ARG ARG F . n F 1 33 ILE 33 33 33 ILE ILE F . n F 1 34 GLU 34 34 34 GLU GLU F . n F 1 35 ASN 35 35 35 ASN ASN F . n F 1 36 GLU 36 36 36 GLU GLU F . n F 1 37 ILE 37 37 37 ILE ILE F . n F 1 38 LYS 38 38 38 LYS LYS F . n F 1 39 ARG 39 39 39 ARG ARG F . n F 1 40 ILE 40 40 40 ILE ILE F . n F 1 41 LYS 41 41 41 LYS LYS F . n F 1 42 LYS 42 42 42 LYS LYS F . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 PO4 1 43 1 PO4 PO4 A . H 2 PO4 1 44 2 PO4 PO4 A . I 3 MPD 1 45 1 MPD MPD A . J 3 MPD 1 46 2 MPD MPD A . K 3 MPD 1 47 6 MPD MPD A . L 3 MPD 1 48 8 MPD MPD A . M 2 PO4 1 43 4 PO4 PO4 B . N 3 MPD 1 44 7 MPD MPD B . O 2 PO4 1 43 5 PO4 PO4 C . P 3 MPD 1 44 3 MPD MPD C . Q 2 PO4 1 43 3 PO4 PO4 D . R 3 MPD 1 43 4 MPD MPD E . S 3 MPD 1 44 5 MPD MPD E . T 4 HOH 1 51 8 HOH HOH A . T 4 HOH 2 53 10 HOH HOH A . T 4 HOH 3 55 55 HOH HOH A . T 4 HOH 4 56 56 HOH HOH A . T 4 HOH 5 57 15 HOH HOH A . T 4 HOH 6 58 58 HOH HOH A . T 4 HOH 7 62 62 HOH HOH A . T 4 HOH 8 64 64 HOH HOH A . T 4 HOH 9 65 21 HOH HOH A . T 4 HOH 10 66 22 HOH HOH A . T 4 HOH 11 68 24 HOH HOH A . T 4 HOH 12 71 26 HOH HOH A . T 4 HOH 13 73 28 HOH HOH A . T 4 HOH 14 77 32 HOH HOH A . T 4 HOH 15 87 42 HOH HOH A . U 4 HOH 1 45 45 HOH HOH B . U 4 HOH 2 46 46 HOH HOH B . U 4 HOH 3 47 1 HOH HOH B . U 4 HOH 4 48 48 HOH HOH B . U 4 HOH 5 49 2 HOH HOH B . U 4 HOH 6 50 7 HOH HOH B . U 4 HOH 7 60 17 HOH HOH B . U 4 HOH 8 64 20 HOH HOH B . U 4 HOH 9 65 65 HOH HOH B . U 4 HOH 10 66 66 HOH HOH B . U 4 HOH 11 67 67 HOH HOH B . U 4 HOH 12 72 27 HOH HOH B . U 4 HOH 13 77 77 HOH HOH B . V 4 HOH 1 50 50 HOH HOH C . V 4 HOH 2 59 59 HOH HOH C . V 4 HOH 3 72 72 HOH HOH C . V 4 HOH 4 76 31 HOH HOH C . V 4 HOH 5 80 35 HOH HOH C . W 4 HOH 1 51 51 HOH HOH D . W 4 HOH 2 52 30 HOH HOH D . W 4 HOH 3 53 53 HOH HOH D . W 4 HOH 4 60 60 HOH HOH D . W 4 HOH 5 63 63 HOH HOH D . W 4 HOH 6 70 25 HOH HOH D . W 4 HOH 7 74 29 HOH HOH D . W 4 HOH 8 75 75 HOH HOH D . W 4 HOH 9 76 76 HOH HOH D . W 4 HOH 10 78 33 HOH HOH D . W 4 HOH 11 82 37 HOH HOH D . W 4 HOH 12 83 38 HOH HOH D . W 4 HOH 13 85 40 HOH HOH D . X 4 HOH 1 47 4 HOH HOH E . X 4 HOH 2 48 5 HOH HOH E . X 4 HOH 3 56 13 HOH HOH E . X 4 HOH 4 57 57 HOH HOH E . X 4 HOH 5 58 14 HOH HOH E . X 4 HOH 6 59 16 HOH HOH E . X 4 HOH 7 61 61 HOH HOH E . X 4 HOH 8 62 18 HOH HOH E . X 4 HOH 9 67 23 HOH HOH E . X 4 HOH 10 68 68 HOH HOH E . X 4 HOH 11 69 69 HOH HOH E . X 4 HOH 12 84 39 HOH HOH E . X 4 HOH 13 86 41 HOH HOH E . X 4 HOH 14 88 44 HOH HOH E . Y 4 HOH 1 43 43 HOH HOH F . Y 4 HOH 2 46 3 HOH HOH F . Y 4 HOH 3 47 47 HOH HOH F . Y 4 HOH 4 49 6 HOH HOH F . Y 4 HOH 5 52 9 HOH HOH F . Y 4 HOH 6 54 11 HOH HOH F . Y 4 HOH 7 55 12 HOH HOH F . Y 4 HOH 8 63 19 HOH HOH F . Y 4 HOH 9 70 70 HOH HOH F . Y 4 HOH 10 71 71 HOH HOH F . Y 4 HOH 11 73 73 HOH HOH F . Y 4 HOH 12 74 74 HOH HOH F . Y 4 HOH 13 75 49 HOH HOH F . Y 4 HOH 14 76 52 HOH HOH F . Y 4 HOH 15 77 54 HOH HOH F . Y 4 HOH 16 78 78 HOH HOH F . Y 4 HOH 17 79 34 HOH HOH F . Y 4 HOH 18 81 36 HOH HOH F . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA trimeric 3 2 author_and_software_defined_assembly PISA trimeric 3 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C,G,H,I,J,K,L,M,N,O,P,T,U,V 2 1 D,E,F,Q,R,S,W,X,Y # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 6320 ? 1 MORE -96 ? 1 'SSA (A^2)' 8750 ? 2 'ABSA (A^2)' 5840 ? 2 MORE -80 ? 2 'SSA (A^2)' 8950 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-05-12 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-08-02 4 'Structure model' 1 3 2021-10-20 5 'Structure model' 1 4 2023-09-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Refinement description' 3 3 'Structure model' 'Source and taxonomy' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 5 'Structure model' 'Data collection' 7 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' entity_src_gen 2 3 'Structure model' software 3 4 'Structure model' database_2 4 4 'Structure model' struct_ref_seq_dif 5 4 'Structure model' struct_site 6 5 'Structure model' chem_comp_atom 7 5 'Structure model' chem_comp_bond 8 5 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_ref_seq_dif.details' 4 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.pdbx_refine_id 1 ? refined 6.7020 5.7160 13.5750 -0.2518 -0.1055 -0.1311 -0.1103 0.0318 -0.0219 1.2163 3.6545 30.8846 -1.3924 5.3354 -8.5612 -0.0389 0.0008 0.1121 0.2350 -0.2357 -0.1787 -0.7576 1.0979 0.2746 'X-RAY DIFFRACTION' 2 ? refined -0.5610 -1.7450 13.4520 -0.3234 -0.2293 -0.0916 0.0773 -0.0346 -0.0493 1.2232 1.4639 31.2792 0.1125 3.9663 -4.2753 -0.0282 -0.1144 -0.0644 0.0462 0.0362 0.0672 -0.1952 0.0830 -0.0080 'X-RAY DIFFRACTION' 3 ? refined 9.5200 -4.3670 11.8430 -0.1186 -0.0802 -0.1199 0.1580 -0.0412 -0.1367 1.5283 3.1648 23.5851 0.1305 -0.2220 -8.0912 -0.0664 0.0820 -0.1865 0.0521 0.2583 0.0510 0.7165 0.1741 -0.1919 'X-RAY DIFFRACTION' 4 ? refined -20.6000 11.7060 12.3030 -0.2239 -0.0971 -0.1320 0.1134 -0.0045 0.0285 2.3662 6.5231 34.3643 2.2080 6.0439 14.1609 -0.1790 0.0954 0.1698 -0.4625 -0.2149 0.2164 -1.4664 -0.4698 0.3939 'X-RAY DIFFRACTION' 5 ? refined -15.4450 2.4630 15.5460 -0.2513 -0.2660 -0.1101 -0.0209 -0.0181 0.0361 1.3013 5.2940 32.7305 -0.3867 -2.5900 11.4717 0.1539 -0.0529 -0.0958 0.2813 -0.1906 0.0804 0.3249 -0.3893 0.0367 'X-RAY DIFFRACTION' 6 ? refined -10.0020 11.1220 12.1430 -0.2455 -0.2139 -0.0456 0.0189 0.0562 0.0451 1.5707 1.9545 33.7861 0.8139 0.9331 5.4030 -0.0198 0.1484 0.1948 -0.1372 0.2057 -0.1120 -0.6148 0.4642 -0.1859 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.pdbx_refine_id 1 1 A 1 ? ? A 42 ? ? ? ? 'X-RAY DIFFRACTION' 2 2 B 3 ? ? B 42 ? ? ? ? 'X-RAY DIFFRACTION' 3 3 C 3 ? ? C 42 ? ? ? ? 'X-RAY DIFFRACTION' 4 4 D 2 ? ? D 42 ? ? ? ? 'X-RAY DIFFRACTION' 5 5 E 3 ? ? E 42 ? ? ? ? 'X-RAY DIFFRACTION' 6 6 F 2 ? ? F 42 ? ? ? ? 'X-RAY DIFFRACTION' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal ADSC 'data collection' Quantum ? 1 AMoRE phasing . ? 2 REFMAC refinement 5.2.0019 ? 3 DENZO 'data reduction' . ? 4 SCALEPACK 'data scaling' . ? 5 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 CB C TRP 19 ? ? CG C TRP 19 ? ? 1.608 1.498 0.110 0.018 N 2 1 CE D LYS 4 ? ? NZ D LYS 4 ? ? 1.704 1.486 0.218 0.025 N 3 1 CE E LYS 31 ? ? NZ E LYS 31 ? ? 1.675 1.486 0.189 0.025 N 4 1 CE E LYS 42 ? ? NZ E LYS 42 ? ? 1.656 1.486 0.170 0.025 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CG B ARG 39 ? ? CD B ARG 39 ? ? NE B ARG 39 ? ? 97.60 111.80 -14.20 2.10 N 2 1 NE B ARG 39 ? ? CZ B ARG 39 ? ? NH1 B ARG 39 ? ? 125.13 120.30 4.83 0.50 N 3 1 NE B ARG 39 ? ? CZ B ARG 39 ? ? NH2 B ARG 39 ? ? 113.80 120.30 -6.50 0.50 N 4 1 CG1 C ILE 23 ? ? CB C ILE 23 ? ? CG2 C ILE 23 ? ? 98.00 111.40 -13.40 2.20 N # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id LYS _pdbx_validate_torsion.auth_asym_id C _pdbx_validate_torsion.auth_seq_id 41 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -94.06 _pdbx_validate_torsion.psi 45.99 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 B GLU 1 ? B GLU 1 2 1 Y 1 B LEU 2 ? B LEU 2 3 1 Y 1 C GLU 1 ? C GLU 1 4 1 Y 1 C LEU 2 ? C LEU 2 5 1 Y 1 D GLU 1 ? D GLU 1 6 1 Y 1 E GLU 1 ? E GLU 1 7 1 Y 1 E LEU 2 ? E LEU 2 8 1 Y 1 F GLU 1 ? F GLU 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 GLU N N N N 74 GLU CA C N S 75 GLU C C N N 76 GLU O O N N 77 GLU CB C N N 78 GLU CG C N N 79 GLU CD C N N 80 GLU OE1 O N N 81 GLU OE2 O N N 82 GLU OXT O N N 83 GLU H H N N 84 GLU H2 H N N 85 GLU HA H N N 86 GLU HB2 H N N 87 GLU HB3 H N N 88 GLU HG2 H N N 89 GLU HG3 H N N 90 GLU HE2 H N N 91 GLU HXT H N N 92 HIS N N N N 93 HIS CA C N S 94 HIS C C N N 95 HIS O O N N 96 HIS CB C N N 97 HIS CG C Y N 98 HIS ND1 N Y N 99 HIS CD2 C Y N 100 HIS CE1 C Y N 101 HIS NE2 N Y N 102 HIS OXT O N N 103 HIS H H N N 104 HIS H2 H N N 105 HIS HA H N N 106 HIS HB2 H N N 107 HIS HB3 H N N 108 HIS HD1 H N N 109 HIS HD2 H N N 110 HIS HE1 H N N 111 HIS HE2 H N N 112 HIS HXT H N N 113 HOH O O N N 114 HOH H1 H N N 115 HOH H2 H N N 116 ILE N N N N 117 ILE CA C N S 118 ILE C C N N 119 ILE O O N N 120 ILE CB C N S 121 ILE CG1 C N N 122 ILE CG2 C N N 123 ILE CD1 C N N 124 ILE OXT O N N 125 ILE H H N N 126 ILE H2 H N N 127 ILE HA H N N 128 ILE HB H N N 129 ILE HG12 H N N 130 ILE HG13 H N N 131 ILE HG21 H N N 132 ILE HG22 H N N 133 ILE HG23 H N N 134 ILE HD11 H N N 135 ILE HD12 H N N 136 ILE HD13 H N N 137 ILE HXT H N N 138 LEU N N N N 139 LEU CA C N S 140 LEU C C N N 141 LEU O O N N 142 LEU CB C N N 143 LEU CG C N N 144 LEU CD1 C N N 145 LEU CD2 C N N 146 LEU OXT O N N 147 LEU H H N N 148 LEU H2 H N N 149 LEU HA H N N 150 LEU HB2 H N N 151 LEU HB3 H N N 152 LEU HG H N N 153 LEU HD11 H N N 154 LEU HD12 H N N 155 LEU HD13 H N N 156 LEU HD21 H N N 157 LEU HD22 H N N 158 LEU HD23 H N N 159 LEU HXT H N N 160 LYS N N N N 161 LYS CA C N S 162 LYS C C N N 163 LYS O O N N 164 LYS CB C N N 165 LYS CG C N N 166 LYS CD C N N 167 LYS CE C N N 168 LYS NZ N N N 169 LYS OXT O N N 170 LYS H H N N 171 LYS H2 H N N 172 LYS HA H N N 173 LYS HB2 H N N 174 LYS HB3 H N N 175 LYS HG2 H N N 176 LYS HG3 H N N 177 LYS HD2 H N N 178 LYS HD3 H N N 179 LYS HE2 H N N 180 LYS HE3 H N N 181 LYS HZ1 H N N 182 LYS HZ2 H N N 183 LYS HZ3 H N N 184 LYS HXT H N N 185 MPD C1 C N N 186 MPD C2 C N N 187 MPD O2 O N N 188 MPD CM C N N 189 MPD C3 C N N 190 MPD C4 C N S 191 MPD O4 O N N 192 MPD C5 C N N 193 MPD H11 H N N 194 MPD H12 H N N 195 MPD H13 H N N 196 MPD HO2 H N N 197 MPD HM1 H N N 198 MPD HM2 H N N 199 MPD HM3 H N N 200 MPD H31 H N N 201 MPD H32 H N N 202 MPD H4 H N N 203 MPD HO4 H N N 204 MPD H51 H N N 205 MPD H52 H N N 206 MPD H53 H N N 207 PHE N N N N 208 PHE CA C N S 209 PHE C C N N 210 PHE O O N N 211 PHE CB C N N 212 PHE CG C Y N 213 PHE CD1 C Y N 214 PHE CD2 C Y N 215 PHE CE1 C Y N 216 PHE CE2 C Y N 217 PHE CZ C Y N 218 PHE OXT O N N 219 PHE H H N N 220 PHE H2 H N N 221 PHE HA H N N 222 PHE HB2 H N N 223 PHE HB3 H N N 224 PHE HD1 H N N 225 PHE HD2 H N N 226 PHE HE1 H N N 227 PHE HE2 H N N 228 PHE HZ H N N 229 PHE HXT H N N 230 PO4 P P N N 231 PO4 O1 O N N 232 PO4 O2 O N N 233 PO4 O3 O N N 234 PO4 O4 O N N 235 SER N N N N 236 SER CA C N S 237 SER C C N N 238 SER O O N N 239 SER CB C N N 240 SER OG O N N 241 SER OXT O N N 242 SER H H N N 243 SER H2 H N N 244 SER HA H N N 245 SER HB2 H N N 246 SER HB3 H N N 247 SER HG H N N 248 SER HXT H N N 249 THR N N N N 250 THR CA C N S 251 THR C C N N 252 THR O O N N 253 THR CB C N R 254 THR OG1 O N N 255 THR CG2 C N N 256 THR OXT O N N 257 THR H H N N 258 THR H2 H N N 259 THR HA H N N 260 THR HB H N N 261 THR HG1 H N N 262 THR HG21 H N N 263 THR HG22 H N N 264 THR HG23 H N N 265 THR HXT H N N 266 TRP N N N N 267 TRP CA C N S 268 TRP C C N N 269 TRP O O N N 270 TRP CB C N N 271 TRP CG C Y N 272 TRP CD1 C Y N 273 TRP CD2 C Y N 274 TRP NE1 N Y N 275 TRP CE2 C Y N 276 TRP CE3 C Y N 277 TRP CZ2 C Y N 278 TRP CZ3 C Y N 279 TRP CH2 C Y N 280 TRP OXT O N N 281 TRP H H N N 282 TRP H2 H N N 283 TRP HA H N N 284 TRP HB2 H N N 285 TRP HB3 H N N 286 TRP HD1 H N N 287 TRP HE1 H N N 288 TRP HE3 H N N 289 TRP HZ2 H N N 290 TRP HZ3 H N N 291 TRP HH2 H N N 292 TRP HXT H N N 293 TYR N N N N 294 TYR CA C N S 295 TYR C C N N 296 TYR O O N N 297 TYR CB C N N 298 TYR CG C Y N 299 TYR CD1 C Y N 300 TYR CD2 C Y N 301 TYR CE1 C Y N 302 TYR CE2 C Y N 303 TYR CZ C Y N 304 TYR OH O N N 305 TYR OXT O N N 306 TYR H H N N 307 TYR H2 H N N 308 TYR HA H N N 309 TYR HB2 H N N 310 TYR HB3 H N N 311 TYR HD1 H N N 312 TYR HD2 H N N 313 TYR HE1 H N N 314 TYR HE2 H N N 315 TYR HH H N N 316 TYR HXT H N N 317 VAL N N N N 318 VAL CA C N S 319 VAL C C N N 320 VAL O O N N 321 VAL CB C N N 322 VAL CG1 C N N 323 VAL CG2 C N N 324 VAL OXT O N N 325 VAL H H N N 326 VAL H2 H N N 327 VAL HA H N N 328 VAL HB H N N 329 VAL HG11 H N N 330 VAL HG12 H N N 331 VAL HG13 H N N 332 VAL HG21 H N N 333 VAL HG22 H N N 334 VAL HG23 H N N 335 VAL HXT H N N 336 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 GLU N CA sing N N 70 GLU N H sing N N 71 GLU N H2 sing N N 72 GLU CA C sing N N 73 GLU CA CB sing N N 74 GLU CA HA sing N N 75 GLU C O doub N N 76 GLU C OXT sing N N 77 GLU CB CG sing N N 78 GLU CB HB2 sing N N 79 GLU CB HB3 sing N N 80 GLU CG CD sing N N 81 GLU CG HG2 sing N N 82 GLU CG HG3 sing N N 83 GLU CD OE1 doub N N 84 GLU CD OE2 sing N N 85 GLU OE2 HE2 sing N N 86 GLU OXT HXT sing N N 87 HIS N CA sing N N 88 HIS N H sing N N 89 HIS N H2 sing N N 90 HIS CA C sing N N 91 HIS CA CB sing N N 92 HIS CA HA sing N N 93 HIS C O doub N N 94 HIS C OXT sing N N 95 HIS CB CG sing N N 96 HIS CB HB2 sing N N 97 HIS CB HB3 sing N N 98 HIS CG ND1 sing Y N 99 HIS CG CD2 doub Y N 100 HIS ND1 CE1 doub Y N 101 HIS ND1 HD1 sing N N 102 HIS CD2 NE2 sing Y N 103 HIS CD2 HD2 sing N N 104 HIS CE1 NE2 sing Y N 105 HIS CE1 HE1 sing N N 106 HIS NE2 HE2 sing N N 107 HIS OXT HXT sing N N 108 HOH O H1 sing N N 109 HOH O H2 sing N N 110 ILE N CA sing N N 111 ILE N H sing N N 112 ILE N H2 sing N N 113 ILE CA C sing N N 114 ILE CA CB sing N N 115 ILE CA HA sing N N 116 ILE C O doub N N 117 ILE C OXT sing N N 118 ILE CB CG1 sing N N 119 ILE CB CG2 sing N N 120 ILE CB HB sing N N 121 ILE CG1 CD1 sing N N 122 ILE CG1 HG12 sing N N 123 ILE CG1 HG13 sing N N 124 ILE CG2 HG21 sing N N 125 ILE CG2 HG22 sing N N 126 ILE CG2 HG23 sing N N 127 ILE CD1 HD11 sing N N 128 ILE CD1 HD12 sing N N 129 ILE CD1 HD13 sing N N 130 ILE OXT HXT sing N N 131 LEU N CA sing N N 132 LEU N H sing N N 133 LEU N H2 sing N N 134 LEU CA C sing N N 135 LEU CA CB sing N N 136 LEU CA HA sing N N 137 LEU C O doub N N 138 LEU C OXT sing N N 139 LEU CB CG sing N N 140 LEU CB HB2 sing N N 141 LEU CB HB3 sing N N 142 LEU CG CD1 sing N N 143 LEU CG CD2 sing N N 144 LEU CG HG sing N N 145 LEU CD1 HD11 sing N N 146 LEU CD1 HD12 sing N N 147 LEU CD1 HD13 sing N N 148 LEU CD2 HD21 sing N N 149 LEU CD2 HD22 sing N N 150 LEU CD2 HD23 sing N N 151 LEU OXT HXT sing N N 152 LYS N CA sing N N 153 LYS N H sing N N 154 LYS N H2 sing N N 155 LYS CA C sing N N 156 LYS CA CB sing N N 157 LYS CA HA sing N N 158 LYS C O doub N N 159 LYS C OXT sing N N 160 LYS CB CG sing N N 161 LYS CB HB2 sing N N 162 LYS CB HB3 sing N N 163 LYS CG CD sing N N 164 LYS CG HG2 sing N N 165 LYS CG HG3 sing N N 166 LYS CD CE sing N N 167 LYS CD HD2 sing N N 168 LYS CD HD3 sing N N 169 LYS CE NZ sing N N 170 LYS CE HE2 sing N N 171 LYS CE HE3 sing N N 172 LYS NZ HZ1 sing N N 173 LYS NZ HZ2 sing N N 174 LYS NZ HZ3 sing N N 175 LYS OXT HXT sing N N 176 MPD C1 C2 sing N N 177 MPD C1 H11 sing N N 178 MPD C1 H12 sing N N 179 MPD C1 H13 sing N N 180 MPD C2 O2 sing N N 181 MPD C2 CM sing N N 182 MPD C2 C3 sing N N 183 MPD O2 HO2 sing N N 184 MPD CM HM1 sing N N 185 MPD CM HM2 sing N N 186 MPD CM HM3 sing N N 187 MPD C3 C4 sing N N 188 MPD C3 H31 sing N N 189 MPD C3 H32 sing N N 190 MPD C4 O4 sing N N 191 MPD C4 C5 sing N N 192 MPD C4 H4 sing N N 193 MPD O4 HO4 sing N N 194 MPD C5 H51 sing N N 195 MPD C5 H52 sing N N 196 MPD C5 H53 sing N N 197 PHE N CA sing N N 198 PHE N H sing N N 199 PHE N H2 sing N N 200 PHE CA C sing N N 201 PHE CA CB sing N N 202 PHE CA HA sing N N 203 PHE C O doub N N 204 PHE C OXT sing N N 205 PHE CB CG sing N N 206 PHE CB HB2 sing N N 207 PHE CB HB3 sing N N 208 PHE CG CD1 doub Y N 209 PHE CG CD2 sing Y N 210 PHE CD1 CE1 sing Y N 211 PHE CD1 HD1 sing N N 212 PHE CD2 CE2 doub Y N 213 PHE CD2 HD2 sing N N 214 PHE CE1 CZ doub Y N 215 PHE CE1 HE1 sing N N 216 PHE CE2 CZ sing Y N 217 PHE CE2 HE2 sing N N 218 PHE CZ HZ sing N N 219 PHE OXT HXT sing N N 220 PO4 P O1 doub N N 221 PO4 P O2 sing N N 222 PO4 P O3 sing N N 223 PO4 P O4 sing N N 224 SER N CA sing N N 225 SER N H sing N N 226 SER N H2 sing N N 227 SER CA C sing N N 228 SER CA CB sing N N 229 SER CA HA sing N N 230 SER C O doub N N 231 SER C OXT sing N N 232 SER CB OG sing N N 233 SER CB HB2 sing N N 234 SER CB HB3 sing N N 235 SER OG HG sing N N 236 SER OXT HXT sing N N 237 THR N CA sing N N 238 THR N H sing N N 239 THR N H2 sing N N 240 THR CA C sing N N 241 THR CA CB sing N N 242 THR CA HA sing N N 243 THR C O doub N N 244 THR C OXT sing N N 245 THR CB OG1 sing N N 246 THR CB CG2 sing N N 247 THR CB HB sing N N 248 THR OG1 HG1 sing N N 249 THR CG2 HG21 sing N N 250 THR CG2 HG22 sing N N 251 THR CG2 HG23 sing N N 252 THR OXT HXT sing N N 253 TRP N CA sing N N 254 TRP N H sing N N 255 TRP N H2 sing N N 256 TRP CA C sing N N 257 TRP CA CB sing N N 258 TRP CA HA sing N N 259 TRP C O doub N N 260 TRP C OXT sing N N 261 TRP CB CG sing N N 262 TRP CB HB2 sing N N 263 TRP CB HB3 sing N N 264 TRP CG CD1 doub Y N 265 TRP CG CD2 sing Y N 266 TRP CD1 NE1 sing Y N 267 TRP CD1 HD1 sing N N 268 TRP CD2 CE2 doub Y N 269 TRP CD2 CE3 sing Y N 270 TRP NE1 CE2 sing Y N 271 TRP NE1 HE1 sing N N 272 TRP CE2 CZ2 sing Y N 273 TRP CE3 CZ3 doub Y N 274 TRP CE3 HE3 sing N N 275 TRP CZ2 CH2 doub Y N 276 TRP CZ2 HZ2 sing N N 277 TRP CZ3 CH2 sing Y N 278 TRP CZ3 HZ3 sing N N 279 TRP CH2 HH2 sing N N 280 TRP OXT HXT sing N N 281 TYR N CA sing N N 282 TYR N H sing N N 283 TYR N H2 sing N N 284 TYR CA C sing N N 285 TYR CA CB sing N N 286 TYR CA HA sing N N 287 TYR C O doub N N 288 TYR C OXT sing N N 289 TYR CB CG sing N N 290 TYR CB HB2 sing N N 291 TYR CB HB3 sing N N 292 TYR CG CD1 doub Y N 293 TYR CG CD2 sing Y N 294 TYR CD1 CE1 sing Y N 295 TYR CD1 HD1 sing N N 296 TYR CD2 CE2 doub Y N 297 TYR CD2 HD2 sing N N 298 TYR CE1 CZ doub Y N 299 TYR CE1 HE1 sing N N 300 TYR CE2 CZ sing Y N 301 TYR CE2 HE2 sing N N 302 TYR CZ OH sing N N 303 TYR OH HH sing N N 304 TYR OXT HXT sing N N 305 VAL N CA sing N N 306 VAL N H sing N N 307 VAL N H2 sing N N 308 VAL CA C sing N N 309 VAL CA CB sing N N 310 VAL CA HA sing N N 311 VAL C O doub N N 312 VAL C OXT sing N N 313 VAL CB CG1 sing N N 314 VAL CB CG2 sing N N 315 VAL CB HB sing N N 316 VAL CG1 HG11 sing N N 317 VAL CG1 HG12 sing N N 318 VAL CG1 HG13 sing N N 319 VAL CG2 HG21 sing N N 320 VAL CG2 HG22 sing N N 321 VAL CG2 HG23 sing N N 322 VAL OXT HXT sing N N 323 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'PHOSPHATE ION' PO4 3 '(4S)-2-METHYL-2,4-PENTANEDIOL' MPD 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1GCM _pdbx_initial_refinement_model.details 'PDB ENTRY 1GCM' #