HEADER OXIDOREDUCTASE 16-FEB-09 3GA0 TITLE CTBP1/BARS GLY172->GLU MUTANT STRUCTURE: IMPAIRING NAD(H) BINDING AND TITLE 2 DIMERIZATION COMPND MOL_ID: 1; COMPND 2 MOLECULE: C-TERMINAL-BINDING PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1-350; COMPND 5 SYNONYM: CTBP1, C-TERMINAL-BINDING PROTEIN 3, CTBP3, 50 KDA BFA- COMPND 6 DEPENDENT ADP-RIBOSYLATION SUBSTRATE, BARS-50; COMPND 7 EC: 1.1.1.-; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: CTBP1, BARS, CTBP3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET11D-HIS KEYWDS TRANSCRIPTION CO-REPRESSION, ACYLTRANSFERASE, BREFELDIN A, NAD, GOLGI KEYWDS 2 MEMBRANE, ACYL-COA, ADP-RIBOSYLATION, CYTOPLASM, NUCLEUS, KEYWDS 3 OXIDOREDUCTASE, PHOSPHOPROTEIN, UBL CONJUGATION EXPDTA X-RAY DIFFRACTION AUTHOR M.NARDINI,C.VALENTE,S.RICAGNO,A.LUINI,D.CORDA,M.BOLOGNESI REVDAT 3 01-NOV-23 3GA0 1 REMARK REVDAT 2 10-NOV-21 3GA0 1 REMARK SEQADV REVDAT 1 21-APR-09 3GA0 0 JRNL AUTH M.NARDINI,C.VALENTE,S.RICAGNO,A.LUINI,D.CORDA,M.BOLOGNESI JRNL TITL CTBP1/BARS GLY172-->GLU MUTANT STRUCTURE: IMPAIRING JRNL TITL 2 NAD(H)-BINDING AND DIMERIZATION JRNL REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 381 70 2009 JRNL REFN ISSN 0006-291X JRNL PMID 19351597 JRNL DOI 10.1016/J.BBRC.2009.02.010 REMARK 2 REMARK 2 RESOLUTION. 3.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.75 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 5053 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.270 REMARK 3 R VALUE (WORKING SET) : 0.262 REMARK 3 FREE R VALUE : 0.334 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 560 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.49 REMARK 3 REFLECTION IN BIN (WORKING SET) : 355 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2880 REMARK 3 BIN FREE R VALUE SET COUNT : 38 REMARK 3 BIN FREE R VALUE : 0.3090 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2609 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 1 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 58.69 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.83000 REMARK 3 B22 (A**2) : 1.83000 REMARK 3 B33 (A**2) : -2.75000 REMARK 3 B12 (A**2) : 0.92000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.665 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.846 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.667 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 40.232 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.882 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.850 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; NULL ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3GA0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-FEB-09. REMARK 100 THE DEPOSITION ID IS D_1000051610. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-DEC-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 5615 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.400 REMARK 200 RESOLUTION RANGE LOW (A) : 29.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.50 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1HKU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.8-2.1M AMMONIUM FORMATE, 1.0M HEPES REMARK 280 (PH7.5), CROSS-SEEDING TECHNIQUE, VAPOR DIFFUSION, TEMPERATURE REMARK 280 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+1/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.41967 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 106.83933 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 53.41967 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 106.83933 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 53.41967 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 106.83933 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 53.41967 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 106.83933 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6540 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.1 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 GLY A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 GLY A 3 REMARK 465 VAL A 4 REMARK 465 ARG A 5 REMARK 465 PRO A 6 REMARK 465 PRO A 7 REMARK 465 ILE A 8 REMARK 465 MET A 9 REMARK 465 ALA A 347 REMARK 465 ALA A 348 REMARK 465 THR A 349 REMARK 465 HIS A 350 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 14 -74.37 -139.42 REMARK 500 PRO A 15 -87.25 -18.01 REMARK 500 ASP A 44 43.99 37.93 REMARK 500 TYR A 65 -144.54 -103.67 REMARK 500 GLU A 141 29.03 -74.90 REMARK 500 GLN A 146 -65.20 -134.45 REMARK 500 ARG A 173 -126.35 47.01 REMARK 500 ALA A 254 -142.02 -65.74 REMARK 500 ASP A 260 90.76 -67.19 REMARK 500 GLU A 282 83.41 -68.72 REMARK 500 SER A 283 91.95 179.05 REMARK 500 PRO A 285 -71.08 0.37 REMARK 500 SER A 287 -154.37 -164.96 REMARK 500 PHE A 288 -26.13 63.26 REMARK 500 ASP A 295 18.93 59.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 11 PRO A 12 -138.67 REMARK 500 MET A 13 HIS A 14 -146.61 REMARK 500 HIS A 14 PRO A 15 -139.09 REMARK 500 ARG A 16 PRO A 17 -143.24 REMARK 500 SER A 283 GLU A 284 -141.76 REMARK 500 PHE A 286 SER A 287 142.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 800 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 801 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1HL3 RELATED DB: PDB REMARK 900 CTBP/BARS: A DUAL-FUNCTION CTBP/BARS IN TERNARY COMPLEX WITH NAD(H) REMARK 900 AND PIDLSKK PEPTIDE REMARK 900 RELATED ID: 1HKU RELATED DB: PDB REMARK 900 CTBP/BARS: A DUAL-FUNCTION PROTEIN INVOLVED IN TRANSCRIPTION REMARK 900 COREPRESSION AND GOLGI MEMBRANE FISSION REMARK 900 RELATED ID: 2HU2 RELATED DB: PDB REMARK 900 CTBP/BARS IN TERNARY COMPLEX WITH NAD(H) AND RRTGAPPAL PEPTIDE DBREF 3GA0 A 1 350 UNP Q9Z2F5 CTBP1_RAT 1 350 SEQADV 3GA0 MET A -7 UNP Q9Z2F5 EXPRESSION TAG SEQADV 3GA0 GLY A -6 UNP Q9Z2F5 EXPRESSION TAG SEQADV 3GA0 HIS A -5 UNP Q9Z2F5 EXPRESSION TAG SEQADV 3GA0 HIS A -4 UNP Q9Z2F5 EXPRESSION TAG SEQADV 3GA0 HIS A -3 UNP Q9Z2F5 EXPRESSION TAG SEQADV 3GA0 HIS A -2 UNP Q9Z2F5 EXPRESSION TAG SEQADV 3GA0 HIS A -1 UNP Q9Z2F5 EXPRESSION TAG SEQADV 3GA0 HIS A 0 UNP Q9Z2F5 EXPRESSION TAG SEQADV 3GA0 GLU A 172 UNP Q9Z2F5 GLY 172 ENGINEERED MUTATION SEQRES 1 A 358 MET GLY HIS HIS HIS HIS HIS HIS MET SER GLY VAL ARG SEQRES 2 A 358 PRO PRO ILE MET ASN GLY PRO MET HIS PRO ARG PRO LEU SEQRES 3 A 358 VAL ALA LEU LEU ASP GLY ARG ASP CYS THR VAL GLU MET SEQRES 4 A 358 PRO ILE LEU LYS ASP VAL ALA THR VAL ALA PHE CYS ASP SEQRES 5 A 358 ALA GLN SER THR GLN GLU ILE HIS GLU LYS VAL LEU ASN SEQRES 6 A 358 GLU ALA VAL GLY ALA LEU MET TYR HIS THR ILE THR LEU SEQRES 7 A 358 THR ARG GLU ASP LEU GLU LYS PHE LYS ALA LEU ARG ILE SEQRES 8 A 358 ILE VAL ARG ILE GLY SER GLY PHE ASP ASN ILE ASP ILE SEQRES 9 A 358 LYS SER ALA GLY ASP LEU GLY ILE ALA VAL CYS ASN VAL SEQRES 10 A 358 PRO ALA ALA SER VAL GLU GLU THR ALA ASP SER THR LEU SEQRES 11 A 358 CYS HIS ILE LEU ASN LEU TYR ARG ARG THR THR TRP LEU SEQRES 12 A 358 HIS GLN ALA LEU ARG GLU GLY THR ARG VAL GLN SER VAL SEQRES 13 A 358 GLU GLN ILE ARG GLU VAL ALA SER GLY ALA ALA ARG ILE SEQRES 14 A 358 ARG GLY GLU THR LEU GLY ILE ILE GLY LEU GLU ARG VAL SEQRES 15 A 358 GLY GLN ALA VAL ALA LEU ARG ALA LYS ALA PHE GLY PHE SEQRES 16 A 358 ASN VAL LEU PHE TYR ASP PRO TYR LEU SER ASP GLY ILE SEQRES 17 A 358 GLU ARG ALA LEU GLY LEU GLN ARG VAL SER THR LEU GLN SEQRES 18 A 358 ASP LEU LEU PHE HIS SER ASP CYS VAL THR LEU HIS CYS SEQRES 19 A 358 GLY LEU ASN GLU HIS ASN HIS HIS LEU ILE ASN ASP PHE SEQRES 20 A 358 THR VAL LYS GLN MET ARG GLN GLY ALA PHE LEU VAL ASN SEQRES 21 A 358 THR ALA ARG GLY GLY LEU VAL ASP GLU LYS ALA LEU ALA SEQRES 22 A 358 GLN ALA LEU LYS GLU GLY ARG ILE ARG GLY ALA ALA LEU SEQRES 23 A 358 ASP VAL HIS GLU SER GLU PRO PHE SER PHE SER GLN GLY SEQRES 24 A 358 PRO LEU LYS ASP ALA PRO ASN LEU ILE CYS THR PRO HIS SEQRES 25 A 358 ALA ALA TRP TYR SER GLU GLN ALA SER ILE GLU MET ARG SEQRES 26 A 358 GLU GLU ALA ALA ARG GLU ILE ARG ARG ALA ILE THR GLY SEQRES 27 A 358 ARG ILE PRO ASP SER LEU LYS ASN CYS VAL ASN LYS ASP SEQRES 28 A 358 HIS LEU THR ALA ALA THR HIS HET FMT A 800 3 HET FMT A 801 3 HETNAM FMT FORMIC ACID FORMUL 2 FMT 2(C H2 O2) FORMUL 4 HOH *(H2 O) HELIX 1 1 GLU A 30 LYS A 35 1 6 HELIX 2 2 SER A 47 ILE A 51 5 5 HELIX 3 3 HIS A 52 ALA A 59 1 8 HELIX 4 4 THR A 71 PHE A 78 1 8 HELIX 5 5 ASP A 95 ASP A 101 1 7 HELIX 6 6 SER A 113 ARG A 131 1 19 HELIX 7 7 ARG A 131 GLU A 141 1 11 HELIX 8 8 SER A 147 ALA A 155 1 9 HELIX 9 9 VAL A 174 PHE A 185 1 12 HELIX 10 10 GLY A 199 LEU A 204 1 6 HELIX 11 11 THR A 211 SER A 219 1 9 HELIX 12 12 ASN A 237 GLN A 243 1 7 HELIX 13 13 ARG A 255 VAL A 259 5 5 HELIX 14 14 ASP A 260 GLU A 270 1 11 HELIX 15 15 SER A 309 GLY A 330 1 22 HELIX 16 16 ASN A 341 LEU A 345 5 5 SHEET 1 A 5 THR A 39 PHE A 42 0 SHEET 2 A 5 LEU A 18 LEU A 21 1 N VAL A 19 O THR A 39 SHEET 3 A 5 GLY A 61 MET A 64 1 O LEU A 63 N ALA A 20 SHEET 4 A 5 ILE A 83 ARG A 86 1 O VAL A 85 N ALA A 62 SHEET 5 A 5 ALA A 105 CYS A 107 1 O ALA A 105 N ILE A 84 SHEET 1 B 7 GLN A 207 ARG A 208 0 SHEET 2 B 7 ASN A 188 TYR A 192 1 N PHE A 191 O GLN A 207 SHEET 3 B 7 THR A 165 ILE A 169 1 N ILE A 168 O TYR A 192 SHEET 4 B 7 CYS A 221 LEU A 224 1 O CYS A 221 N GLY A 167 SHEET 5 B 7 PHE A 249 ASN A 252 1 O VAL A 251 N VAL A 222 SHEET 6 B 7 GLY A 275 LEU A 278 1 O ALA A 277 N LEU A 250 SHEET 7 B 7 LEU A 299 CYS A 301 1 O ILE A 300 N LEU A 278 CISPEP 1 ILE A 332 PRO A 333 0 -11.01 SITE 1 AC1 4 THR A 253 ARG A 255 HIS A 304 FMT A 801 SITE 1 AC2 5 HIS A 66 ARG A 86 ILE A 87 TRP A 307 SITE 2 AC2 5 FMT A 800 CRYST1 89.197 89.197 160.259 90.00 90.00 120.00 P 64 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011211 0.006473 0.000000 0.00000 SCALE2 0.000000 0.012946 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006240 0.00000