HEADER NUCLEAR PROTEIN 17-FEB-09 3GAE TITLE CRYSTAL STRUCTURE OF PUL COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN DOA1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: PUL DOMAIN, UNP RESIDUES 464-715; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: UFD3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS UFD3, CDC48, ARMADILLO REPEAT, NUCLEUS, PHOSPHOPROTEIN, UBL KEYWDS 2 CONJUGATION PATHWAY, WD REPEAT, NUCLEAR PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR G.ZHAO,H.SCHINDELIN,W.J.LENNARZ REVDAT 4 20-MAR-24 3GAE 1 REMARK SEQADV REVDAT 3 01-NOV-17 3GAE 1 REMARK REVDAT 2 13-JUL-11 3GAE 1 VERSN REVDAT 1 15-DEC-09 3GAE 0 JRNL AUTH G.ZHAO,G.LI,H.SCHINDELIN,W.J.LENNARZ JRNL TITL AN ARMADILLO MOTIF IN UFD3 INTERACTS WITH CDC48 AND IS JRNL TITL 2 INVOLVED IN UBIQUITIN HOMEOSTASIS AND PROTEIN DEGRADATION JRNL REF PROC.NATL.ACAD.SCI.USA V. 106 16197 2009 JRNL REFN ISSN 0027-8424 JRNL PMID 19805280 JRNL DOI 10.1073/PNAS.0908321106 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 71140 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3597 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4878 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.32 REMARK 3 BIN R VALUE (WORKING SET) : 0.2420 REMARK 3 BIN FREE R VALUE SET COUNT : 260 REMARK 3 BIN FREE R VALUE : 0.2780 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4040 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 15 REMARK 3 SOLVENT ATOMS : 548 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.47 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.11000 REMARK 3 B22 (A**2) : -0.11000 REMARK 3 B33 (A**2) : 0.16000 REMARK 3 B12 (A**2) : -0.05000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.090 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.092 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.060 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.713 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.944 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4175 ; 0.020 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2763 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5674 ; 1.756 ; 1.965 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6810 ; 1.082 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 507 ; 6.152 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 196 ;37.930 ;25.816 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 749 ;13.503 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;16.782 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 660 ; 0.112 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4579 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 787 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2542 ; 1.074 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1019 ; 0.357 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4148 ; 1.788 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1633 ; 2.664 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1525 ; 4.105 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 463 A 651 REMARK 3 ORIGIN FOR THE GROUP (A): 56.5158 -2.0594 23.7550 REMARK 3 T TENSOR REMARK 3 T11: 0.0901 T22: 0.0594 REMARK 3 T33: 0.0507 T12: 0.0212 REMARK 3 T13: -0.0080 T23: 0.0284 REMARK 3 L TENSOR REMARK 3 L11: 1.5628 L22: 1.1839 REMARK 3 L33: 0.2873 L12: 0.9948 REMARK 3 L13: 0.4294 L23: 0.3799 REMARK 3 S TENSOR REMARK 3 S11: 0.0886 S12: -0.0816 S13: -0.1166 REMARK 3 S21: -0.0027 S22: -0.0675 S23: -0.0887 REMARK 3 S31: 0.0107 S32: -0.0298 S33: -0.0211 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 652 A 715 REMARK 3 ORIGIN FOR THE GROUP (A): 67.8457 19.4130 31.3283 REMARK 3 T TENSOR REMARK 3 T11: 0.0455 T22: 0.0833 REMARK 3 T33: 0.0658 T12: -0.0068 REMARK 3 T13: 0.0131 T23: -0.0049 REMARK 3 L TENSOR REMARK 3 L11: 1.8174 L22: 1.2606 REMARK 3 L33: 0.6350 L12: 0.0300 REMARK 3 L13: 0.2196 L23: -0.0886 REMARK 3 S TENSOR REMARK 3 S11: 0.0663 S12: -0.2087 S13: 0.1016 REMARK 3 S21: -0.0123 S22: -0.0788 S23: -0.1166 REMARK 3 S31: -0.0435 S32: -0.0384 S33: 0.0125 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 463 B 590 REMARK 3 ORIGIN FOR THE GROUP (A): 33.2530 5.5071 41.3405 REMARK 3 T TENSOR REMARK 3 T11: 0.0467 T22: 0.0783 REMARK 3 T33: 0.0548 T12: 0.0007 REMARK 3 T13: -0.0213 T23: 0.0101 REMARK 3 L TENSOR REMARK 3 L11: 0.5077 L22: 1.6594 REMARK 3 L33: 1.4107 L12: -0.0268 REMARK 3 L13: 0.4349 L23: -0.9525 REMARK 3 S TENSOR REMARK 3 S11: 0.1003 S12: -0.0215 S13: -0.0190 REMARK 3 S21: -0.1299 S22: -0.0441 S23: 0.0773 REMARK 3 S31: 0.1960 S32: 0.0244 S33: -0.0561 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 591 B 715 REMARK 3 ORIGIN FOR THE GROUP (A): 39.9683 28.3507 35.8530 REMARK 3 T TENSOR REMARK 3 T11: 0.0473 T22: 0.0473 REMARK 3 T33: 0.0910 T12: 0.0073 REMARK 3 T13: 0.0014 T23: -0.0016 REMARK 3 L TENSOR REMARK 3 L11: 1.9789 L22: 1.3783 REMARK 3 L33: 1.0101 L12: 0.7854 REMARK 3 L13: 0.2274 L23: -0.1411 REMARK 3 S TENSOR REMARK 3 S11: 0.0196 S12: -0.0889 S13: 0.2152 REMARK 3 S21: -0.0205 S22: -0.0211 S23: 0.1553 REMARK 3 S31: -0.0723 S32: 0.0009 S33: 0.0015 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES: RESIDUAL ONLY REMARK 4 REMARK 4 3GAE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-FEB-09. REMARK 100 THE DEPOSITION ID IS D_1000051624. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-OCT-08; 24-AUG-08 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 3 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; N REMARK 200 RADIATION SOURCE : NSLS; ROTATING ANODE REMARK 200 BEAMLINE : X26C; NULL REMARK 200 X-RAY GENERATOR MODEL : NULL; RIGAKU RUH3R REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; NULL REMARK 200 WAVELENGTH OR RANGE (A) : 1; 1.5418 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4; RIGAKU RAXIS REMARK 200 IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 71191 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.05100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.6800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : 2.20 REMARK 200 R MERGE FOR SHELL (I) : 0.38600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM ACETATE (PH 5.6), 0.1M REMARK 280 MGCL2, 26-28% PEG 3350, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.59933 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 77.19867 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N GLY A 562 O HOH A 777 1.96 REMARK 500 C ASN A 479 O HOH A 797 2.08 REMARK 500 O ASN A 479 O HOH A 797 2.12 REMARK 500 O ASN A 563 N ASN A 565 2.13 REMARK 500 OD1 ASP B 481 O HOH B 160 2.14 REMARK 500 O HOH A 716 O HOH A 797 2.15 REMARK 500 O HOH B 327 O HOH B 344 2.16 REMARK 500 OD1 ASP B 555 O HOH B 367 2.16 REMARK 500 O TYR B 478 O HOH B 223 2.16 REMARK 500 OD2 ASP B 648 O HOH B 419 2.17 REMARK 500 OG1 THR B 567 O2 GOL B 5 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 527 NE - CZ - NH1 ANGL. DEV. = -3.6 DEGREES REMARK 500 ARG A 527 NE - CZ - NH2 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG B 669 NE - CZ - NH1 ANGL. DEV. = 4.6 DEGREES REMARK 500 ARG B 669 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 477 114.54 -24.39 REMARK 500 ASP A 511 58.35 -145.91 REMARK 500 LYS A 564 -28.57 72.44 REMARK 500 LYS A 564 -28.70 69.92 REMARK 500 ASN A 584 -71.57 -79.47 REMARK 500 GLN A 609 -40.90 130.98 REMARK 500 SER A 690 -17.98 -141.41 REMARK 500 MET B 475 79.32 -112.41 REMARK 500 ASP B 511 70.92 -151.53 REMARK 500 ASN B 584 -72.22 -92.62 REMARK 500 GLN B 609 -21.45 118.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 4 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 5 DBREF 3GAE A 464 715 UNP P36037 DOA1_YEAST 464 715 DBREF 3GAE B 464 715 UNP P36037 DOA1_YEAST 464 715 SEQADV 3GAE GLY A 463 UNP P36037 EXPRESSION TAG SEQADV 3GAE GLY B 463 UNP P36037 EXPRESSION TAG SEQRES 1 A 253 GLY MET LYS VAL LEU PRO VAL LYS GLN TYR LEU ILE MET SEQRES 2 A 253 GLU ASN TYR ASN PRO ASP THR ILE PHE ASN GLY ILE VAL SEQRES 3 A 253 LYS ILE ASN SER ASN GLU LYS THR PHE ASP ASP GLU ILE SEQRES 4 A 253 LEU ALA GLN ILE GLY GLY ALA LEU HIS ASP ILE ASP GLU SEQRES 5 A 253 SER TRP GLU LEU LEU LEU SER PHE ALA ASN THR ILE ARG SEQRES 6 A 253 SER ASN TRP GLU ILE LYS THR PRO ALA TYR ASP ILE VAL SEQRES 7 A 253 ARG LEU ILE VAL LYS LYS LEU PRO TYR SER SER ASP ILE SEQRES 8 A 253 LYS ASP TYR ILE GLU GLU GLY LEU GLY ASN LYS ASN ILE SEQRES 9 A 253 THR LEU THR MET LEU THR VAL ARG ILE LEU VAL ASN CYS SEQRES 10 A 253 PHE ASN ASN GLU ASN TRP GLY VAL LYS LEU LEU GLU SER SEQRES 11 A 253 ASN GLN VAL TYR LYS SER ILE PHE GLU THR ILE ASP THR SEQRES 12 A 253 GLU PHE SER GLN ALA SER ALA LYS GLN SER GLN ASN LEU SEQRES 13 A 253 ALA ILE ALA VAL SER THR LEU ILE PHE ASN TYR SER ALA SEQRES 14 A 253 LEU VAL THR LYS GLY ASN SER ASP LEU GLU LEU LEU PRO SEQRES 15 A 253 ILE VAL ALA ASP ALA ILE ASN THR LYS TYR GLY PRO LEU SEQRES 16 A 253 GLU GLU TYR GLN GLU CYS GLU GLU ALA ALA TYR ARG LEU SEQRES 17 A 253 THR VAL ALA TYR GLY ASN LEU ALA THR VAL GLU PRO THR SEQRES 18 A 253 LEU ARG GLN PHE ALA ASN SER VAL THR TRP LEU ALA ASN SEQRES 19 A 253 ILE LYS ARG SER TYR GLY ASN VAL PRO ARG PHE LYS ASP SEQRES 20 A 253 ILE PHE ASP ASP LEU SER SEQRES 1 B 253 GLY MET LYS VAL LEU PRO VAL LYS GLN TYR LEU ILE MET SEQRES 2 B 253 GLU ASN TYR ASN PRO ASP THR ILE PHE ASN GLY ILE VAL SEQRES 3 B 253 LYS ILE ASN SER ASN GLU LYS THR PHE ASP ASP GLU ILE SEQRES 4 B 253 LEU ALA GLN ILE GLY GLY ALA LEU HIS ASP ILE ASP GLU SEQRES 5 B 253 SER TRP GLU LEU LEU LEU SER PHE ALA ASN THR ILE ARG SEQRES 6 B 253 SER ASN TRP GLU ILE LYS THR PRO ALA TYR ASP ILE VAL SEQRES 7 B 253 ARG LEU ILE VAL LYS LYS LEU PRO TYR SER SER ASP ILE SEQRES 8 B 253 LYS ASP TYR ILE GLU GLU GLY LEU GLY ASN LYS ASN ILE SEQRES 9 B 253 THR LEU THR MET LEU THR VAL ARG ILE LEU VAL ASN CYS SEQRES 10 B 253 PHE ASN ASN GLU ASN TRP GLY VAL LYS LEU LEU GLU SER SEQRES 11 B 253 ASN GLN VAL TYR LYS SER ILE PHE GLU THR ILE ASP THR SEQRES 12 B 253 GLU PHE SER GLN ALA SER ALA LYS GLN SER GLN ASN LEU SEQRES 13 B 253 ALA ILE ALA VAL SER THR LEU ILE PHE ASN TYR SER ALA SEQRES 14 B 253 LEU VAL THR LYS GLY ASN SER ASP LEU GLU LEU LEU PRO SEQRES 15 B 253 ILE VAL ALA ASP ALA ILE ASN THR LYS TYR GLY PRO LEU SEQRES 16 B 253 GLU GLU TYR GLN GLU CYS GLU GLU ALA ALA TYR ARG LEU SEQRES 17 B 253 THR VAL ALA TYR GLY ASN LEU ALA THR VAL GLU PRO THR SEQRES 18 B 253 LEU ARG GLN PHE ALA ASN SER VAL THR TRP LEU ALA ASN SEQRES 19 B 253 ILE LYS ARG SER TYR GLY ASN VAL PRO ARG PHE LYS ASP SEQRES 20 B 253 ILE PHE ASP ASP LEU SER HET CL A 3 1 HET CL B 1 1 HET CL B 2 1 HET GOL B 4 6 HET GOL B 5 6 HETNAM CL CHLORIDE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 CL 3(CL 1-) FORMUL 6 GOL 2(C3 H8 O3) FORMUL 8 HOH *548(H2 O) HELIX 1 1 ASN A 479 LYS A 495 1 17 HELIX 2 2 ASP A 498 HIS A 510 1 13 HELIX 3 3 ASP A 511 TRP A 530 1 20 HELIX 4 4 LYS A 533 VAL A 544 1 12 HELIX 5 5 LYS A 545 LEU A 547 5 3 HELIX 6 6 TYR A 549 ASP A 552 5 4 HELIX 7 7 ILE A 553 LEU A 561 1 9 HELIX 8 8 ASN A 565 PHE A 580 1 16 HELIX 9 9 TRP A 585 GLU A 591 1 7 HELIX 10 10 SER A 592 LYS A 597 1 6 HELIX 11 11 SER A 598 ILE A 603 1 6 HELIX 12 12 SER A 611 LYS A 635 1 25 HELIX 13 13 GLU A 641 THR A 652 1 12 HELIX 14 14 LEU A 657 CYS A 663 1 7 HELIX 15 15 CYS A 663 GLU A 681 1 19 HELIX 16 16 PRO A 682 GLN A 686 5 5 HELIX 17 17 VAL A 691 GLY A 702 1 12 HELIX 18 18 VAL A 704 SER A 715 1 12 HELIX 19 19 ASN B 479 LYS B 495 1 17 HELIX 20 20 ASP B 498 HIS B 510 1 13 HELIX 21 21 SER B 515 TRP B 530 1 16 HELIX 22 22 LYS B 533 VAL B 544 1 12 HELIX 23 23 LYS B 545 LEU B 547 5 3 HELIX 24 24 TYR B 549 ASP B 552 5 4 HELIX 25 25 ILE B 553 LEU B 561 1 9 HELIX 26 26 ASN B 565 PHE B 580 1 16 HELIX 27 27 TRP B 585 GLU B 591 1 7 HELIX 28 28 SER B 592 LYS B 597 1 6 HELIX 29 29 SER B 598 ILE B 603 1 6 HELIX 30 30 SER B 611 GLY B 636 1 26 HELIX 31 31 GLU B 641 THR B 652 1 12 HELIX 32 32 LEU B 657 CYS B 663 1 7 HELIX 33 33 CYS B 663 GLU B 681 1 19 HELIX 34 34 PRO B 682 GLN B 686 5 5 HELIX 35 35 VAL B 691 GLY B 702 1 12 HELIX 36 36 VAL B 704 SER B 715 1 12 CISPEP 1 LEU A 467 PRO A 468 0 -7.18 CISPEP 2 LEU B 467 PRO B 468 0 -4.88 SITE 1 AC1 1 ASN A 617 SITE 1 AC2 3 THR A 692 TRP A 693 ASN B 493 SITE 1 AC3 5 HOH A 229 ASN A 493 HOH B 58 THR B 692 SITE 2 AC3 5 TRP B 693 SITE 1 AC4 5 HOH B 7 HOH B 197 ILE B 474 ILE B 620 SITE 2 AC4 5 ARG B 669 SITE 1 AC5 5 ILE B 566 THR B 567 MET B 570 GLN B 614 SITE 2 AC5 5 ASN B 617 CRYST1 64.588 64.588 115.798 90.00 90.00 120.00 P 31 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015483 0.008939 0.000000 0.00000 SCALE2 0.000000 0.017878 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008636 0.00000