HEADER    DNA                                     19-FEB-09   3GBI              
TITLE     THE RATIONAL DESIGN AND STRUCTURAL ANALYSIS OF A SELF-ASSEMBLED THREE-
TITLE    2 DIMENSIONAL DNA CRYSTAL                                              
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: DNA (5'-                                                   
COMPND   3 D(*GP*AP*GP*CP*AP*GP*CP*CP*TP*GP*TP*AP*CP*GP*GP*AP*CP*AP*TP*CP*A)-   
COMPND   4 3');                                                                 
COMPND   5 CHAIN: A;                                                            
COMPND   6 ENGINEERED: YES;                                                     
COMPND   7 MOL_ID: 2;                                                           
COMPND   8 MOLECULE: DNA (5'-D(P*CP*CP*GP*TP*AP*CP*A)-3');                      
COMPND   9 CHAIN: B;                                                            
COMPND  10 FRAGMENT: SYMMETRICALLY- AND SEQUENTIALLY REPEATING UNIT OF A        
COMPND  11 CIRCULAR DNA MOLECULES, SEE REMARK 400 FOR DETAILS.;                 
COMPND  12 ENGINEERED: YES;                                                     
COMPND  13 MOL_ID: 3;                                                           
COMPND  14 MOLECULE: DNA (5'-D(P*GP*GP*CP*TP*GP*C)-3');                         
COMPND  15 CHAIN: C;                                                            
COMPND  16 FRAGMENT: LAST 6 RESIDUES OF A DNA MOLECULE USED IN EXPERIMENT, SEE  
COMPND  17 REMARK 400 FOR DETAILS.;                                             
COMPND  18 ENGINEERED: YES;                                                     
COMPND  19 MOL_ID: 4;                                                           
COMPND  20 MOLECULE: DNA (5'-D(*TP*CP*TP*GP*AP*TP*GP*T)-3');                    
COMPND  21 CHAIN: D;                                                            
COMPND  22 FRAGMENT: FIRST 8 RESIDUES OF A DNA MOLECULE USED IN EXPERIMENT, SEE 
COMPND  23 REMARK 400 FOR DETAILS.;                                             
COMPND  24 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 SYNTHETIC: YES;                                                      
SOURCE   3 OTHER_DETAILS: DNA STRANDS WERE SYNTHESIZED BY STANDARD              
SOURCE   4 PHOSPHORAMIDITE TECHNIQUES ON AN APPLIED BIOSYSTEMS 394 DNA          
SOURCE   5 SYNTHESIZER USING TRITYL-ON MODE.;                                   
SOURCE   6 MOL_ID: 2;                                                           
SOURCE   7 SYNTHETIC: YES;                                                      
SOURCE   8 OTHER_DETAILS: DNA STRANDS WERE SYNTHESIZED BY STANDARD              
SOURCE   9 PHOSPHORAMIDITE TECHNIQUES ON AN APPLIED BIOSYSTEMS 394 DNA          
SOURCE  10 SYNTHESIZER USING TRITYL-ON;                                         
SOURCE  11 MOL_ID: 3;                                                           
SOURCE  12 SYNTHETIC: YES;                                                      
SOURCE  13 OTHER_DETAILS: DNA STRANDS WERE SYNTHESIZED BY STANDARD              
SOURCE  14 PHOSPHORAMIDITE TECHNIQUES ON AN APPLIED BIOSYSTEMS 394 DNA          
SOURCE  15 SYNTHESIZER USING TRITYL-ON;                                         
SOURCE  16 MOL_ID: 4;                                                           
SOURCE  17 SYNTHETIC: YES;                                                      
SOURCE  18 OTHER_DETAILS: DNA STRANDS WERE SYNTHESIZED BY STANDARD              
SOURCE  19 PHOSPHORAMIDITE TECHNIQUES ON AN APPLIED BIOSYSTEMS 394 DNA          
SOURCE  20 SYNTHESIZER USING TRITYL-ON                                          
KEYWDS    NANOTECHNOLOGY, DNA CRYSTALS, DNA CROSSOVER, DESIGNED CRYSTAL         
KEYWDS   2 LATTICE, DNA                                                         
EXPDTA    X-RAY DIFFRACTION                                                     
AUTHOR    J.J.BIRKTOFT,J.ZHENG,N.C.SEEMAN                                       
REVDAT   4   21-FEB-24 3GBI    1       DBREF  LINK                              
REVDAT   3   01-NOV-17 3GBI    1       REMARK                                   
REVDAT   2   22-SEP-09 3GBI    1       JRNL                                     
REVDAT   1   01-SEP-09 3GBI    0                                                
JRNL        AUTH   J.ZHENG,J.J.BIRKTOFT,Y.CHEN,T.WANG,R.SHA,P.E.CONSTANTINOU,   
JRNL        AUTH 2 S.L.GINELL,C.MAO,N.C.SEEMAN                                  
JRNL        TITL   FROM MOLECULAR TO MACROSCOPIC VIA THE RATIONAL DESIGN OF A   
JRNL        TITL 2 SELF-ASSEMBLED 3D DNA CRYSTAL.                               
JRNL        REF    NATURE                        V. 461    74 2009              
JRNL        REFN                   ISSN 0028-0836                               
JRNL        PMID   19727196                                                     
JRNL        DOI    10.1038/NATURE08274                                          
REMARK   2                                                                      
REMARK   2 RESOLUTION.    4.02 ANGSTROMS.                                       
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : PHENIX                                               
REMARK   3   AUTHORS     : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN            
REMARK   3               : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,           
REMARK   3               : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,            
REMARK   3               : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,              
REMARK   3               : REETAL PAI,RANDY READ,JANE RICHARDSON,               
REMARK   3               : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,           
REMARK   3               : NICHOLAS SAUTER,JACOB SMITH,LAURENT                  
REMARK   3               : STORONI,TOM TERWILLIGER,PETER ZWART                  
REMARK   3                                                                      
REMARK   3    REFINEMENT TARGET : ML                                            
REMARK   3                                                                      
REMARK   3  DATA USED IN REFINEMENT.                                            
REMARK   3   RESOLUTION RANGE HIGH (ANGSTROMS) : 4.02                           
REMARK   3   RESOLUTION RANGE LOW  (ANGSTROMS) : 17.29                          
REMARK   3   MIN(FOBS/SIGMA_FOBS)              : 0.140                          
REMARK   3   COMPLETENESS FOR RANGE        (%) : 61.1                           
REMARK   3   NUMBER OF REFLECTIONS             : 2022                           
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT.                                     
REMARK   3   R VALUE     (WORKING + TEST SET) : 0.246                           
REMARK   3   R VALUE            (WORKING SET) : 0.240                           
REMARK   3   FREE R VALUE                     : 0.309                           
REMARK   3   FREE R VALUE TEST SET SIZE   (%) : 10.040                          
REMARK   3   FREE R VALUE TEST SET COUNT      : 203                             
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT (IN BINS).                           
REMARK   3   BIN  RESOLUTION RANGE  COMPL.    NWORK NFREE   RWORK  RFREE        
REMARK   3     1  0.0000 -  4.0180    0.61     1819   203  0.2400 0.3090        
REMARK   3                                                                      
REMARK   3  BULK SOLVENT MODELLING.                                             
REMARK   3   METHOD USED        : FLAT BULK SOLVENT MODEL                       
REMARK   3   SOLVENT RADIUS     : NULL                                          
REMARK   3   SHRINKAGE RADIUS   : NULL                                          
REMARK   3   K_SOL              : 0.09                                          
REMARK   3   B_SOL              : 20.00                                         
REMARK   3                                                                      
REMARK   3  ERROR ESTIMATES.                                                    
REMARK   3   COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED)     : 0.830            
REMARK   3   PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL             
REMARK   3                                                                      
REMARK   3  B VALUES.                                                           
REMARK   3   FROM WILSON PLOT           (A**2) : 199.8                          
REMARK   3   MEAN B VALUE      (OVERALL, A**2) : 80.00                          
REMARK   3   OVERALL ANISOTROPIC B VALUE.                                       
REMARK   3    B11 (A**2) : 63.25200                                             
REMARK   3    B22 (A**2) : 63.25200                                             
REMARK   3    B33 (A**2) : 227.85100                                            
REMARK   3    B12 (A**2) : 0.00000                                              
REMARK   3    B13 (A**2) : 0.00000                                              
REMARK   3    B23 (A**2) : 0.00000                                              
REMARK   3                                                                      
REMARK   3  TWINNING INFORMATION.                                               
REMARK   3   FRACTION: NULL                                                     
REMARK   3   OPERATOR: NULL                                                     
REMARK   3                                                                      
REMARK   3  DEVIATIONS FROM IDEAL VALUES.                                       
REMARK   3                 RMSD          COUNT                                  
REMARK   3   BOND      :  0.016           1052                                  
REMARK   3   ANGLE     :  1.364           1465                                  
REMARK   3   CHIRALITY :  0.058            166                                  
REMARK   3   PLANARITY :  0.002             42                                  
REMARK   3   DIHEDRAL  : 31.823            406                                  
REMARK   3                                                                      
REMARK   3  TLS DETAILS                                                         
REMARK   3   NUMBER OF TLS GROUPS  : NULL                                       
REMARK   3                                                                      
REMARK   3  NCS DETAILS                                                         
REMARK   3   NUMBER OF NCS GROUPS : NULL                                        
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: IN REALITY ALL 3211 MEASURED              
REMARK   3  REFLECTIONS WERE USED IN THE REFINEMENT (USING PHENIX). OF THESE    
REMARK   3  ONLY 2022 HAD FOBS/SIGMA_FOBS >/= 0.140.                            
REMARK   4                                                                      
REMARK   4 3GBI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-MAR-09.                  
REMARK 100 THE DEPOSITION ID IS D_1000051659.                                   
REMARK 200                                                                      
REMARK 200 EXPERIMENTAL DETAILS                                                 
REMARK 200  EXPERIMENT TYPE                : X-RAY DIFFRACTION                  
REMARK 200  DATE OF DATA COLLECTION        : 17-JUN-08                          
REMARK 200  TEMPERATURE           (KELVIN) : NULL                               
REMARK 200  PH                             : 8.5                                
REMARK 200  NUMBER OF CRYSTALS USED        : 1                                  
REMARK 200                                                                      
REMARK 200  SYNCHROTRON              (Y/N) : Y                                  
REMARK 200  RADIATION SOURCE               : APS                                
REMARK 200  BEAMLINE                       : 19-ID                              
REMARK 200  X-RAY GENERATOR MODEL          : NULL                               
REMARK 200  MONOCHROMATIC OR LAUE    (M/L) : M                                  
REMARK 200  WAVELENGTH OR RANGE        (A) : 1.0                                
REMARK 200  MONOCHROMATOR                  : GRAPHITE                           
REMARK 200  OPTICS                         : NULL                               
REMARK 200                                                                      
REMARK 200  DETECTOR TYPE                  : CCD                                
REMARK 200  DETECTOR MANUFACTURER          : ADSC QUANTUM 315R                  
REMARK 200  INTENSITY-INTEGRATION SOFTWARE : HKL-3000                           
REMARK 200  DATA SCALING SOFTWARE          : HKL-3000                           
REMARK 200                                                                      
REMARK 200  NUMBER OF UNIQUE REFLECTIONS   : 3211                               
REMARK 200  RESOLUTION RANGE HIGH      (A) : 4.010                              
REMARK 200  RESOLUTION RANGE LOW       (A) : 17.300                             
REMARK 200  REJECTION CRITERIA  (SIGMA(I)) : 0.000                              
REMARK 200                                                                      
REMARK 200 OVERALL.                                                             
REMARK 200  COMPLETENESS FOR RANGE     (%) : 96.1                               
REMARK 200  DATA REDUNDANCY                : 7.300                              
REMARK 200  R MERGE                    (I) : 0.06700                            
REMARK 200  R SYM                      (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR THE DATA SET  : 10.9000                            
REMARK 200                                                                      
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.                                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 4.00                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE LOW  (A) : 4.07                     
REMARK 200  COMPLETENESS FOR SHELL     (%) : 100.0                              
REMARK 200  DATA REDUNDANCY IN SHELL       : NULL                               
REMARK 200  R MERGE FOR SHELL          (I) : NULL                               
REMARK 200  R SYM FOR SHELL            (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR SHELL         : NULL                               
REMARK 200                                                                      
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH                              
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL                         
REMARK 200 SOFTWARE USED: HKL2MAP                                               
REMARK 200 STARTING MODEL: NULL                                                 
REMARK 200                                                                      
REMARK 200 REMARK: NULL                                                         
REMARK 280                                                                      
REMARK 280 CRYSTAL                                                              
REMARK 280 SOLVENT CONTENT, VS   (%): NULL                                      
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL                     
REMARK 280                                                                      
REMARK 280 CRYSTALLIZATION CONDITIONS: GROWN BY VAPOR DIFFUSION WHILE TREATED   
REMARK 280  WITH A CONTROLLED TEMPERATURE GRADIENT FROM 333 DEGS TO 293         
REMARK 280  DEGS., PH 8.5, VAPOR DIFFUSION, SITTING DROP                        
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY                                            
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3                              
REMARK 290                                                                      
REMARK 290      SYMOP   SYMMETRY                                                
REMARK 290     NNNMMM   OPERATOR                                                
REMARK 290       1555   X,Y,Z                                                   
REMARK 290       2555   -Y,X-Y,Z                                                
REMARK 290       3555   -X+Y,-X,Z                                               
REMARK 290       4555   X+2/3,Y+1/3,Z+1/3                                       
REMARK 290       5555   -Y+2/3,X-Y+1/3,Z+1/3                                    
REMARK 290       6555   -X+Y+2/3,-X+1/3,Z+1/3                                   
REMARK 290       7555   X+1/3,Y+2/3,Z+2/3                                       
REMARK 290       8555   -Y+1/3,X-Y+2/3,Z+2/3                                    
REMARK 290       9555   -X+Y+1/3,-X+2/3,Z+2/3                                   
REMARK 290                                                                      
REMARK 290     WHERE NNN -> OPERATOR NUMBER                                     
REMARK 290           MMM -> TRANSLATION VECTOR                                  
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS                            
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM             
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY                
REMARK 290 RELATED MOLECULES.                                                   
REMARK 290   SMTRY1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   2 -0.500000 -0.866025  0.000000        0.00000            
REMARK 290   SMTRY2   2  0.866025 -0.500000  0.000000        0.00000            
REMARK 290   SMTRY3   2  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   3 -0.500000  0.866025  0.000000        0.00000            
REMARK 290   SMTRY2   3 -0.866025 -0.500000  0.000000        0.00000            
REMARK 290   SMTRY3   3  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   4  1.000000  0.000000  0.000000       53.58050            
REMARK 290   SMTRY2   4  0.000000  1.000000  0.000000       30.93472            
REMARK 290   SMTRY3   4  0.000000  0.000000  1.000000       31.04800            
REMARK 290   SMTRY1   5 -0.500000 -0.866025  0.000000       53.58050            
REMARK 290   SMTRY2   5  0.866025 -0.500000  0.000000       30.93472            
REMARK 290   SMTRY3   5  0.000000  0.000000  1.000000       31.04800            
REMARK 290   SMTRY1   6 -0.500000  0.866025  0.000000       53.58050            
REMARK 290   SMTRY2   6 -0.866025 -0.500000  0.000000       30.93472            
REMARK 290   SMTRY3   6  0.000000  0.000000  1.000000       31.04800            
REMARK 290   SMTRY1   7  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   7  0.000000  1.000000  0.000000       61.86943            
REMARK 290   SMTRY3   7  0.000000  0.000000  1.000000       62.09600            
REMARK 290   SMTRY1   8 -0.500000 -0.866025  0.000000        0.00000            
REMARK 290   SMTRY2   8  0.866025 -0.500000  0.000000       61.86943            
REMARK 290   SMTRY3   8  0.000000  0.000000  1.000000       62.09600            
REMARK 290   SMTRY1   9 -0.500000  0.866025  0.000000        0.00000            
REMARK 290   SMTRY2   9 -0.866025 -0.500000  0.000000       61.86943            
REMARK 290   SMTRY3   9  0.000000  0.000000  1.000000       62.09600            
REMARK 290                                                                      
REMARK 290 REMARK: NULL                                                         
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 300 REMARK: AUTHORS STATE THAT THE CRYSTAL IS AN INFINITE NETWORK MADE   
REMARK 300 FROM THREE DNA STRANDS THAT SELF-ASSOCIATE. IN THE CURRENT ENTRY     
REMARK 300 THE ASYMMETRIC UNIT IS COMPRISED OF 4 CHAINS, 3 OF WHICH ARE         
REMARK 300 FRAGMENTS OF LONGER DNA STRANDS. APPLYING THE SPACE GROUP H3         
REMARK 300 SYMMETRY OPERATORS (X, Y, Z,), (-Y, X-Y, Z), AND (-X+Y,-X,Z) TO THE  
REMARK 300 CONTENTS OF THE ASYMMETRIC UNIT GENERATES ONE TRIMERIC UNIT OF THE   
REMARK 300 SELF-ASSOCIATED DNA NETWORK. ADDITIONAL DETAILS ABOUT THE CHEMICAL   
REMARK 300 COMPOSITION AND ASSOCIATION ARE INCLUDED IN REMARK 400.              
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEPTAMERIC                        
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D                            
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 350   BIOMT1   2 -0.500000 -0.866025  0.000000        0.00000            
REMARK 350   BIOMT2   2  0.866025 -0.500000  0.000000        0.00000            
REMARK 350   BIOMT3   2  0.000000  0.000000  1.000000        0.00000            
REMARK 350   BIOMT1   3 -0.500000  0.866025  0.000000        0.00000            
REMARK 350   BIOMT2   3 -0.866025 -0.500000  0.000000        0.00000            
REMARK 350   BIOMT3   3  0.000000  0.000000  1.000000        0.00000            
REMARK 400                                                                      
REMARK 400 COMPOUND                                                             
REMARK 400 THE STRUCTURE UNIT IS GENERATED FROM 7 DNA STRANDS WHICH FORM        
REMARK 400 A NETWORK UNIT WITH INTERNAL 3-FOLD SYMMETRY. EXTENDING OF THE       
REMARK 400 STRUCTURE UNIT IN 3-D SPACE RESULTS THE CRYSTAL AT R3 SPACE          
REMARK 400 GROUP (REPRESENTED AS H3). THE DNA SEQUENCES OF THE 7 STRANDS        
REMARK 400 ARE:                                                                 
REMARK 400 (#1) 3 STRANDS                                                       
REMARK 400 5'-D(*GP*AP*GP*CP*AP*GP*CP*CP*TP*GP*TP*AP*CP*GP*GP*AP*CP*AP*TP       
REMARK 400 *CP*A)-3'                                                            
REMARK 400                                                                      
REMARK 400 (#2) 1 STRAND                                                        
REMARK 400 5'-D(*TP*AP*CP*AP*CP*CP*GP*TP*AP*CP*AP*CP*CP*GP*TP*AP*CP*AP*CP*      
REMARK 400 CP*G)-3'                                                             
REMARK 400                                                                      
REMARK 400 (#3) 3 STRANDS                                                       
REMARK 400 5'-D(*TP*CP*TP*GP*AP*TP*GP*TP*GP*GP*CP*TP*GP*C)-3'                   
REMARK 400                                                                      
REMARK 400 THE ASYMMETRIC UNIT IS COMPRISED OF ONE FULL #1 STRAND (CHAIN A),    
REMARK 400 7-RESIDUE REPEATING UNIT OF #2 STRAND (CHAIN B) AND TWO FRAGMENTS    
REMARK 400 OF #3 STRAND (CHAINS C AND D).                                       
REMARK 400                                                                      
REMARK 400 THE #2 STRAND SELF-ASSOICATES TO FORM A CIRCULAR DNA MOLECULE        
REMARK 400 WITH INTERNAL 3-FOLD SYMMETRY. IT HAS 3 SYMMETRIC AND SEQUENTIAL     
REMARK 400 REPEATING UNITS. CHAIN B IN THE ASYMMETRIC UNIT REPRESENTS ONE       
REMARK 400 OF THESE REPEATING UNITS.                                            
REMARK 400                                                                      
REMARK 400 CHAINS D (FIRST 8 RESIDUES OF STRAND #3) AND C (NEXT 6 RESIDUES      
REMARK 400 OF STRAND #3) TOGETHER FORM THE THIRD DNA STRAND (#3) OF THE         
REMARK 400 EXPERIMENT. THIS DNA STRAND SPANS TWO ASYMMETRIC UNITS - HENCE IT    
REMARK 400 WAS DIVIDED INTO THE CURRENT CHAINS C AND D FOR CONVENIENT           
REMARK 400 REPRESENTATION. CHAIN C (1_555) IS COVALENTLY LINKED TO              
REMARK 400 CHAIN D OF ANOTHER ASYMMETRIC UNIT (3_555); AND CHAIN D (1_555)      
REMARK 400 IS COVALENTLY LINKED TO CHAIN C OF ANOTHER ASYMMETRIC UNIT           
REMARK 400 (2_555).                                                             
REMARK 400                                                                      
REMARK 400 THE SELECTION OF RESIDUES FROM THE DNA #2 AND #3                     
REMARK 400 ARE DICTATED BY THEIR PROXIMITY (BASE PAIRING) TO CHAIN A.           
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS                                      
REMARK 500                                                                      
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES              
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE               
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                 
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3)               
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999                        
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996                     
REMARK 500                                                                      
REMARK 500  M RES CSSEQI ATM1   RES CSSEQI ATM2   DEVIATION                     
REMARK 500     DT D 106   C5     DT D 106   C7      0.036                       
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES                                       
REMARK 500                                                                      
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES              
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE               
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                 
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)              
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999                        
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996                     
REMARK 500                                                                      
REMARK 500  M RES CSSEQI ATM1   ATM2   ATM3                                     
REMARK 500     DA A 102   O4' -  C1' -  N9  ANGL. DEV. =   4.3 DEGREES          
REMARK 500     DG A 103   O4' -  C1' -  N9  ANGL. DEV. =   4.3 DEGREES          
REMARK 500     DA A 105   C3' -  C2' -  C1' ANGL. DEV. =  -5.2 DEGREES          
REMARK 500     DA A 105   O4' -  C1' -  N9  ANGL. DEV. =   2.6 DEGREES          
REMARK 500     DC A 107   C1' -  O4' -  C4' ANGL. DEV. =  -6.2 DEGREES          
REMARK 500     DC A 107   C3' -  C2' -  C1' ANGL. DEV. =  -5.1 DEGREES          
REMARK 500     DC A 107   O4' -  C1' -  N1  ANGL. DEV. =   4.4 DEGREES          
REMARK 500     DT A 111   O4' -  C1' -  N1  ANGL. DEV. =   1.9 DEGREES          
REMARK 500     DA A 116   O4' -  C1' -  N9  ANGL. DEV. =   3.7 DEGREES          
REMARK 500     DC A 117   O4' -  C1' -  N1  ANGL. DEV. =   2.8 DEGREES          
REMARK 500     DA A 118   O4' -  C4' -  C3' ANGL. DEV. =  -3.0 DEGREES          
REMARK 500     DT A 119   O4' -  C1' -  N1  ANGL. DEV. =   1.9 DEGREES          
REMARK 500     DA A 121   C3' -  C2' -  C1' ANGL. DEV. =  -6.8 DEGREES          
REMARK 500     DA A 121   O4' -  C1' -  N9  ANGL. DEV. =   1.9 DEGREES          
REMARK 500     DA B 123   C3' -  C2' -  C1' ANGL. DEV. =  -6.9 DEGREES          
REMARK 500     DA B 123   O4' -  C1' -  N9  ANGL. DEV. =   3.4 DEGREES          
REMARK 500     DG C 210   O4' -  C1' -  N9  ANGL. DEV. =   3.2 DEGREES          
REMARK 500     DC C 211   O4' -  C1' -  N1  ANGL. DEV. =   3.0 DEGREES          
REMARK 500     DG C 213   O4' -  C1' -  N9  ANGL. DEV. =   3.2 DEGREES          
REMARK 500     DC D 102   O4' -  C1' -  N1  ANGL. DEV. =   2.0 DEGREES          
REMARK 500     DT D 103   O4' -  C1' -  N1  ANGL. DEV. =   3.5 DEGREES          
REMARK 500     DG D 104   C3' -  C2' -  C1' ANGL. DEV. =  -6.0 DEGREES          
REMARK 500     DA D 105   C3' -  C2' -  C1' ANGL. DEV. =  -5.1 DEGREES          
REMARK 500     DT D 106   C1' -  O4' -  C4' ANGL. DEV. =  -6.4 DEGREES          
REMARK 500     DT D 106   C3' -  C2' -  C1' ANGL. DEV. =  -5.1 DEGREES          
REMARK 500     DT D 106   O4' -  C1' -  N1  ANGL. DEV. =   2.8 DEGREES          
REMARK 500     DT D 108   O4' -  C1' -  N1  ANGL. DEV. =   1.9 DEGREES          
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
DBREF  3GBI A  101   121  PDB    3GBI     3GBI           101    121             
DBREF  3GBI B  119   125  PDB    3GBI     3GBI           119    125             
DBREF  3GBI C  209   214  PDB    3GBI     3GBI           209    214             
DBREF  3GBI D  101   108  PDB    3GBI     3GBI           101    108             
SEQRES   1 A   21   DG  DA  DG  DC  DA  DG  DC  DC  DT  DG  DT  DA  DC          
SEQRES   2 A   21   DG  DG  DA  DC  DA  DT  DC  DA                              
SEQRES   1 B    7   DC  DC  DG  DT  DA  DC  DA                                  
SEQRES   1 C    6   DG  DG  DC  DT  DG  DC                                      
SEQRES   1 D    8   DT  DC  DT  DG  DA  DT  DG  DT                              
LINK         P    DC B 119                 O3'  DA B 125     1555   2555  1.61  
LINK         P    DC B 119                 O3'  DA B 125     3555   1555  1.61  
LINK         P    DG C 209                 O3'  DT D 108     1555   3555  1.61  
LINK         P    DG C 209                 O3'  DT D 108     2555   1555  1.61  
CRYST1  107.161  107.161   93.144  90.00  90.00 120.00 H 3           9          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      0.009332  0.005388  0.000000        0.00000                         
SCALE2      0.000000  0.010775  0.000000        0.00000                         
SCALE3      0.000000  0.000000  0.010736        0.00000