HEADER TRANSCRIPTION REGULATOR 20-FEB-09 3GBV TITLE CRYSTAL STRUCTURE OF A PUTATIVE LACI TRANSCRIPTIONAL REGULATOR FROM TITLE 2 BACTEROIDES FRAGILIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE LACI-FAMILY TRANSCRIPTIONAL REGULATOR; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 64-352; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES FRAGILIS; SOURCE 3 ORGANISM_TAXID: 272559; SOURCE 4 STRAIN: NCTC 9343; SOURCE 5 ATCC: 25285; SOURCE 6 GENE: BF2720; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)RIL; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_VECTOR: TOP10 INVITROGEN; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: (BC)PSGX2(BC) KEYWDS NYSGXRC, PSI-II, 11231J, TRANSCRIPTIONAL REGULATOR, STRUCTURAL KEYWDS 2 GENOMICS, PROTEIN STRUCTURE INITIATIVE, NEW YORK STRUCTURAL GENOMIX KEYWDS 3 RESEARCH CONSORTIUM, DNA-BINDING, TRANSCRIPTION, TRANSCRIPTION KEYWDS 4 REGULATION, TRANSCRIPTION REGULATOR, NEW YORK SGX RESEARCH CENTER KEYWDS 5 FOR STRUCTURAL GENOMICS EXPDTA X-RAY DIFFRACTION AUTHOR B.SYED IBRAHIM,D.KUMARAN,S.K.BURLEY,S.SWAMINATHAN,NEW YORK SGX AUTHOR 2 RESEARCH CENTER FOR STRUCTURAL GENOMICS (NYSGXRC) REVDAT 3 10-FEB-21 3GBV 1 AUTHOR JRNL REMARK SEQADV REVDAT 3 2 1 LINK REVDAT 2 13-JUL-11 3GBV 1 VERSN REVDAT 1 10-MAR-09 3GBV 0 JRNL AUTH B.SYED IBRAHIM,D.KUMARAN,S.K.BURLEY,S.SWAMINATHAN JRNL TITL CRYSTAL STRUCTURE OF A PUTATIVE LACI TRANSCRIPTIONAL JRNL TITL 2 REGULATOR FROM BACTEROIDES FRAGILIS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.58 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 111121.970 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 90.2 REMARK 3 NUMBER OF REFLECTIONS : 29559 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1480 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.006 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.34 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 66.30 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3364 REMARK 3 BIN R VALUE (WORKING SET) : 0.2260 REMARK 3 BIN FREE R VALUE : 0.2510 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.10 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 180 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.019 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4693 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 25 REMARK 3 SOLVENT ATOMS : 198 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 7.73000 REMARK 3 B22 (A**2) : -11.78000 REMARK 3 B33 (A**2) : 4.05000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.25 REMARK 3 ESD FROM SIGMAA (A) : 0.19 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.30 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.23 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.40 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.790 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.450 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.250 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.830 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.260 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.39 REMARK 3 BSOL : 46.43 REMARK 3 REMARK 3 NCS MODEL : NONE REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 PARAMETER FILE 2 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: RESIDUES LISTED AS MISSING IN REMARK REMARK 3 465 ARE DUE TO LACK OF ELECTRON DENSITY. RESIDUES WITH MISSING REMARK 3 ATOMS LISTED IN REMARK 470 ARE DUE TO LACK OF ELECTRON DENSITY REMARK 3 FOR SIDE CHAINS AND MODELED AS ALANINES. REMARK 4 REMARK 4 3GBV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-FEB-09. REMARK 100 THE DEPOSITION ID IS D_1000051670. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-JAN-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X25 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : SI(III) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32226 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 200 DATA REDUNDANCY : 10.90 REMARK 200 R MERGE (I) : 0.09800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 81.2 REMARK 200 DATA REDUNDANCY IN SHELL : 6.40 REMARK 200 R MERGE FOR SHELL (I) : 0.45500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXD, SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.82 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.4 M SODIUM MALONATE, 30% 1,6 REMARK 280 -HEXANEDIOL, 20% XYLITOL, PH 7.0, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.60700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 59.60700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 21.98800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 120.28400 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 21.98800 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 120.28400 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 59.60700 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 21.98800 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 120.28400 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 59.60700 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 21.98800 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 120.28400 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26040 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.4 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 58 REMARK 465 SER A 59 REMARK 465 LEU A 60 REMARK 465 ALA A 61 REMARK 465 SER A 62 REMARK 465 ASN A 63 REMARK 465 SER A 353 REMARK 465 GLU A 354 REMARK 465 GLY A 355 REMARK 465 HIS A 356 REMARK 465 HIS A 357 REMARK 465 HIS A 358 REMARK 465 HIS A 359 REMARK 465 HIS A 360 REMARK 465 HIS A 361 REMARK 465 MSE B 58 REMARK 465 SER B 59 REMARK 465 LEU B 60 REMARK 465 ALA B 61 REMARK 465 SER B 62 REMARK 465 ASN B 63 REMARK 465 ASN B 241 REMARK 465 ILE B 242 REMARK 465 SER B 353 REMARK 465 GLU B 354 REMARK 465 GLY B 355 REMARK 465 HIS B 356 REMARK 465 HIS B 357 REMARK 465 HIS B 358 REMARK 465 HIS B 359 REMARK 465 HIS B 360 REMARK 465 HIS B 361 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU B 240 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ILE A 242 N - CA - C ANGL. DEV. = -18.0 DEGREES REMARK 500 LEU A 285 CA - CB - CG ANGL. DEV. = 14.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 99 79.96 42.18 REMARK 500 THR A 135 -71.43 -116.95 REMARK 500 ASP A 158 -64.86 73.80 REMARK 500 VAL A 190 -70.90 -27.13 REMARK 500 ASN A 191 62.86 -103.20 REMARK 500 GLU A 203 22.08 48.70 REMARK 500 SER A 208 111.21 170.30 REMARK 500 LEU A 240 -160.62 -76.33 REMARK 500 ASN A 241 4.02 132.84 REMARK 500 LYS A 267 43.42 -107.11 REMARK 500 ASP A 289 147.34 69.99 REMARK 500 LEU A 290 45.38 -88.40 REMARK 500 THR B 135 -158.15 -99.15 REMARK 500 ASP B 158 -55.72 82.11 REMARK 500 ALA B 164 61.30 -150.03 REMARK 500 ASN B 191 62.27 -114.98 REMARK 500 SER B 208 114.10 -172.40 REMARK 500 ALA B 238 -73.64 -49.68 REMARK 500 ASP B 239 64.23 -104.21 REMARK 500 ASP B 282 46.14 -104.92 REMARK 500 ASP B 289 150.20 72.44 REMARK 500 LEU B 290 46.63 -90.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 1 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR B 110 OH REMARK 620 2 LYS B 200 O 83.1 REMARK 620 3 ILE B 206 O 92.2 98.2 REMARK 620 4 GLN B 211 OE1 156.7 117.8 94.6 REMARK 620 5 EDO B 364 O2 75.2 118.3 138.8 85.1 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 362 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 363 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 363 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 362 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 364 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 365 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGXRC-11231J RELATED DB: TARGETDB DBREF 3GBV A 61 353 UNP Q5LBV2 Q5LBV2_BACFN 61 353 DBREF 3GBV B 61 353 UNP Q5LBV2 Q5LBV2_BACFN 61 353 SEQADV 3GBV MSE A 58 UNP Q5LBV2 EXPRESSION TAG SEQADV 3GBV SER A 59 UNP Q5LBV2 EXPRESSION TAG SEQADV 3GBV LEU A 60 UNP Q5LBV2 EXPRESSION TAG SEQADV 3GBV GLU A 354 UNP Q5LBV2 EXPRESSION TAG SEQADV 3GBV GLY A 355 UNP Q5LBV2 EXPRESSION TAG SEQADV 3GBV HIS A 356 UNP Q5LBV2 EXPRESSION TAG SEQADV 3GBV HIS A 357 UNP Q5LBV2 EXPRESSION TAG SEQADV 3GBV HIS A 358 UNP Q5LBV2 EXPRESSION TAG SEQADV 3GBV HIS A 359 UNP Q5LBV2 EXPRESSION TAG SEQADV 3GBV HIS A 360 UNP Q5LBV2 EXPRESSION TAG SEQADV 3GBV HIS A 361 UNP Q5LBV2 EXPRESSION TAG SEQADV 3GBV MSE B 58 UNP Q5LBV2 EXPRESSION TAG SEQADV 3GBV SER B 59 UNP Q5LBV2 EXPRESSION TAG SEQADV 3GBV LEU B 60 UNP Q5LBV2 EXPRESSION TAG SEQADV 3GBV GLU B 354 UNP Q5LBV2 EXPRESSION TAG SEQADV 3GBV GLY B 355 UNP Q5LBV2 EXPRESSION TAG SEQADV 3GBV HIS B 356 UNP Q5LBV2 EXPRESSION TAG SEQADV 3GBV HIS B 357 UNP Q5LBV2 EXPRESSION TAG SEQADV 3GBV HIS B 358 UNP Q5LBV2 EXPRESSION TAG SEQADV 3GBV HIS B 359 UNP Q5LBV2 EXPRESSION TAG SEQADV 3GBV HIS B 360 UNP Q5LBV2 EXPRESSION TAG SEQADV 3GBV HIS B 361 UNP Q5LBV2 EXPRESSION TAG SEQRES 1 A 304 MSE SER LEU ALA SER ASN LYS LYS TYR THR PHE ALA CYS SEQRES 2 A 304 LEU LEU PRO LYS HIS LEU GLU GLY GLU TYR TRP THR ASP SEQRES 3 A 304 VAL GLN LYS GLY ILE ARG GLU ALA VAL THR THR TYR SER SEQRES 4 A 304 ASP PHE ASN ILE SER ALA ASN ILE THR HIS TYR ASP PRO SEQRES 5 A 304 TYR ASP TYR ASN SER PHE VAL ALA THR SER GLN ALA VAL SEQRES 6 A 304 ILE GLU GLU GLN PRO ASP GLY VAL MSE PHE ALA PRO THR SEQRES 7 A 304 VAL PRO GLN TYR THR LYS GLY PHE THR ASP ALA LEU ASN SEQRES 8 A 304 GLU LEU GLY ILE PRO TYR ILE TYR ILE ASP SER GLN ILE SEQRES 9 A 304 LYS ASP ALA PRO PRO LEU ALA PHE PHE GLY GLN ASN SER SEQRES 10 A 304 HIS GLN SER GLY TYR PHE ALA ALA ARG MSE LEU MSE LEU SEQRES 11 A 304 LEU ALA VAL ASN ASP ARG GLU ILE VAL ILE PHE ARG LYS SEQRES 12 A 304 ILE HIS GLU GLY VAL ILE GLY SER ASN GLN GLN GLU SER SEQRES 13 A 304 ARG GLU ILE GLY PHE ARG GLN TYR MSE GLN GLU HIS HIS SEQRES 14 A 304 PRO ALA CYS ASN ILE LEU GLU LEU ASN LEU HIS ALA ASP SEQRES 15 A 304 LEU ASN ILE GLU ASP SER ARG MSE LEU ASP ASP PHE PHE SEQRES 16 A 304 ARG GLU HIS PRO ASP VAL LYS HIS GLY ILE THR PHE ASN SEQRES 17 A 304 SER LYS VAL TYR ILE ILE GLY GLU TYR LEU GLN GLN ARG SEQRES 18 A 304 ARG LYS SER ASP PHE SER LEU ILE GLY TYR ASP LEU LEU SEQRES 19 A 304 GLU ARG ASN VAL THR CYS LEU LYS GLU GLY THR VAL SER SEQRES 20 A 304 PHE LEU ILE ALA GLN GLN PRO GLU LEU GLN GLY PHE ASN SEQRES 21 A 304 SER ILE LYS THR LEU CYS ASP HIS LEU ILE PHE ARG LYS SEQRES 22 A 304 GLU VAL ALA CYS THR ASN TYR MSE PRO ILE ASP LEU LEU SEQRES 23 A 304 THR LYS GLU ASN ILE ASP TYR TYR HIS SER GLU GLY HIS SEQRES 24 A 304 HIS HIS HIS HIS HIS SEQRES 1 B 304 MSE SER LEU ALA SER ASN LYS LYS TYR THR PHE ALA CYS SEQRES 2 B 304 LEU LEU PRO LYS HIS LEU GLU GLY GLU TYR TRP THR ASP SEQRES 3 B 304 VAL GLN LYS GLY ILE ARG GLU ALA VAL THR THR TYR SER SEQRES 4 B 304 ASP PHE ASN ILE SER ALA ASN ILE THR HIS TYR ASP PRO SEQRES 5 B 304 TYR ASP TYR ASN SER PHE VAL ALA THR SER GLN ALA VAL SEQRES 6 B 304 ILE GLU GLU GLN PRO ASP GLY VAL MSE PHE ALA PRO THR SEQRES 7 B 304 VAL PRO GLN TYR THR LYS GLY PHE THR ASP ALA LEU ASN SEQRES 8 B 304 GLU LEU GLY ILE PRO TYR ILE TYR ILE ASP SER GLN ILE SEQRES 9 B 304 LYS ASP ALA PRO PRO LEU ALA PHE PHE GLY GLN ASN SER SEQRES 10 B 304 HIS GLN SER GLY TYR PHE ALA ALA ARG MSE LEU MSE LEU SEQRES 11 B 304 LEU ALA VAL ASN ASP ARG GLU ILE VAL ILE PHE ARG LYS SEQRES 12 B 304 ILE HIS GLU GLY VAL ILE GLY SER ASN GLN GLN GLU SER SEQRES 13 B 304 ARG GLU ILE GLY PHE ARG GLN TYR MSE GLN GLU HIS HIS SEQRES 14 B 304 PRO ALA CYS ASN ILE LEU GLU LEU ASN LEU HIS ALA ASP SEQRES 15 B 304 LEU ASN ILE GLU ASP SER ARG MSE LEU ASP ASP PHE PHE SEQRES 16 B 304 ARG GLU HIS PRO ASP VAL LYS HIS GLY ILE THR PHE ASN SEQRES 17 B 304 SER LYS VAL TYR ILE ILE GLY GLU TYR LEU GLN GLN ARG SEQRES 18 B 304 ARG LYS SER ASP PHE SER LEU ILE GLY TYR ASP LEU LEU SEQRES 19 B 304 GLU ARG ASN VAL THR CYS LEU LYS GLU GLY THR VAL SER SEQRES 20 B 304 PHE LEU ILE ALA GLN GLN PRO GLU LEU GLN GLY PHE ASN SEQRES 21 B 304 SER ILE LYS THR LEU CYS ASP HIS LEU ILE PHE ARG LYS SEQRES 22 B 304 GLU VAL ALA CYS THR ASN TYR MSE PRO ILE ASP LEU LEU SEQRES 23 B 304 THR LYS GLU ASN ILE ASP TYR TYR HIS SER GLU GLY HIS SEQRES 24 B 304 HIS HIS HIS HIS HIS MODRES 3GBV MSE A 131 MET SELENOMETHIONINE MODRES 3GBV MSE A 184 MET SELENOMETHIONINE MODRES 3GBV MSE A 186 MET SELENOMETHIONINE MODRES 3GBV MSE A 222 MET SELENOMETHIONINE MODRES 3GBV MSE A 247 MET SELENOMETHIONINE MODRES 3GBV MSE A 338 MET SELENOMETHIONINE MODRES 3GBV MSE B 131 MET SELENOMETHIONINE MODRES 3GBV MSE B 184 MET SELENOMETHIONINE MODRES 3GBV MSE B 186 MET SELENOMETHIONINE MODRES 3GBV MSE B 222 MET SELENOMETHIONINE MODRES 3GBV MSE B 247 MET SELENOMETHIONINE MODRES 3GBV MSE B 338 MET SELENOMETHIONINE HET MSE A 131 8 HET MSE A 184 8 HET MSE A 186 8 HET MSE A 222 8 HET MSE A 247 8 HET MSE A 338 8 HET MSE B 131 8 HET MSE B 184 8 HET MSE B 186 8 HET MSE B 222 8 HET MSE B 247 8 HET MSE B 338 8 HET EDO A 362 4 HET EDO A 363 4 HET EDO B 363 4 HET EDO B 362 4 HET EDO B 364 4 HET EDO B 365 4 HET NA B 1 1 HETNAM MSE SELENOMETHIONINE HETNAM EDO 1,2-ETHANEDIOL HETNAM NA SODIUM ION HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 12(C5 H11 N O2 SE) FORMUL 3 EDO 6(C2 H6 O2) FORMUL 9 NA NA 1+ FORMUL 10 HOH *198(H2 O) HELIX 1 1 TYR A 80 TYR A 95 1 16 HELIX 2 2 SER A 96 PHE A 98 5 3 HELIX 3 3 ASP A 111 GLU A 124 1 14 HELIX 4 4 VAL A 136 TYR A 139 5 4 HELIX 5 5 THR A 140 GLY A 151 1 12 HELIX 6 6 ASN A 173 ALA A 189 1 17 HELIX 7 7 SER A 208 HIS A 226 1 19 HELIX 8 8 GLU A 243 HIS A 255 1 13 HELIX 9 9 VAL A 268 ARG A 278 1 11 HELIX 10 10 LEU A 291 GLU A 300 1 10 HELIX 11 11 GLN A 310 ILE A 327 1 18 HELIX 12 12 ASN A 347 TYR A 351 5 5 HELIX 13 13 GLU B 79 TYR B 95 1 17 HELIX 14 14 SER B 96 PHE B 98 5 3 HELIX 15 15 ASP B 111 GLN B 126 1 16 HELIX 16 16 VAL B 136 GLY B 151 1 16 HELIX 17 17 ASN B 173 ALA B 189 1 17 HELIX 18 18 SER B 208 HIS B 226 1 19 HELIX 19 19 GLU B 243 HIS B 255 1 13 HELIX 20 20 VAL B 268 ARG B 278 1 11 HELIX 21 21 LEU B 291 GLU B 300 1 10 HELIX 22 22 GLN B 310 ILE B 327 1 18 HELIX 23 23 ASN B 347 TYR B 351 5 5 SHEET 1 A 6 ILE A 100 TYR A 107 0 SHEET 2 A 6 TYR A 66 PRO A 73 1 N PHE A 68 O SER A 101 SHEET 3 A 6 GLY A 129 PHE A 132 1 O GLY A 129 N ALA A 69 SHEET 4 A 6 TYR A 154 ILE A 157 1 O ILE A 155 N PHE A 132 SHEET 5 A 6 ALA A 168 GLY A 171 1 O ALA A 168 N TYR A 156 SHEET 6 A 6 THR A 335 TYR A 337 1 O ASN A 336 N PHE A 169 SHEET 1 B 6 ASN A 230 HIS A 237 0 SHEET 2 B 6 GLU A 194 ILE A 201 1 N ILE A 195 O LEU A 232 SHEET 3 B 6 HIS A 260 THR A 263 1 O ILE A 262 N PHE A 198 SHEET 4 B 6 SER A 284 TYR A 288 1 O SER A 284 N GLY A 261 SHEET 5 B 6 VAL A 303 ALA A 308 1 O SER A 304 N LEU A 285 SHEET 6 B 6 ASP A 341 LEU A 343 -1 O LEU A 343 N LEU A 306 SHEET 1 C 6 ILE B 100 TYR B 107 0 SHEET 2 C 6 TYR B 66 PRO B 73 1 N PHE B 68 O SER B 101 SHEET 3 C 6 GLY B 129 PHE B 132 1 O GLY B 129 N ALA B 69 SHEET 4 C 6 TYR B 154 ILE B 157 1 O ILE B 155 N PHE B 132 SHEET 5 C 6 ALA B 168 GLN B 172 1 O PHE B 170 N TYR B 156 SHEET 6 C 6 THR B 335 MSE B 338 1 O MSE B 338 N GLY B 171 SHEET 1 D 6 ASN B 230 HIS B 237 0 SHEET 2 D 6 GLU B 194 ILE B 201 1 N ILE B 195 O LEU B 232 SHEET 3 D 6 HIS B 260 THR B 263 1 O ILE B 262 N PHE B 198 SHEET 4 D 6 SER B 284 TYR B 288 1 O SER B 284 N GLY B 261 SHEET 5 D 6 VAL B 303 ALA B 308 1 O SER B 304 N LEU B 285 SHEET 6 D 6 ASP B 341 LEU B 343 -1 O LEU B 343 N LEU B 306 LINK C VAL A 130 N MSE A 131 1555 1555 1.33 LINK C MSE A 131 N PHE A 132 1555 1555 1.33 LINK C ARG A 183 N MSE A 184 1555 1555 1.33 LINK C MSE A 184 N LEU A 185 1555 1555 1.33 LINK C LEU A 185 N MSE A 186 1555 1555 1.33 LINK C MSE A 186 N LEU A 187 1555 1555 1.33 LINK C TYR A 221 N MSE A 222 1555 1555 1.33 LINK C MSE A 222 N GLN A 223 1555 1555 1.33 LINK C ARG A 246 N MSE A 247 1555 1555 1.33 LINK C MSE A 247 N LEU A 248 1555 1555 1.33 LINK C TYR A 337 N MSE A 338 1555 1555 1.33 LINK C MSE A 338 N PRO A 339 1555 1555 1.34 LINK C VAL B 130 N MSE B 131 1555 1555 1.33 LINK C MSE B 131 N PHE B 132 1555 1555 1.33 LINK C ARG B 183 N MSE B 184 1555 1555 1.33 LINK C MSE B 184 N LEU B 185 1555 1555 1.33 LINK C LEU B 185 N MSE B 186 1555 1555 1.33 LINK C MSE B 186 N LEU B 187 1555 1555 1.33 LINK C TYR B 221 N MSE B 222 1555 1555 1.33 LINK C MSE B 222 N GLN B 223 1555 1555 1.33 LINK C ARG B 246 N MSE B 247 1555 1555 1.33 LINK C MSE B 247 N LEU B 248 1555 1555 1.33 LINK C TYR B 337 N MSE B 338 1555 1555 1.32 LINK C MSE B 338 N PRO B 339 1555 1555 1.33 LINK NA NA B 1 OH TYR B 110 1555 1555 2.62 LINK NA NA B 1 O LYS B 200 1555 1555 2.38 LINK NA NA B 1 O ILE B 206 1555 1555 2.41 LINK NA NA B 1 OE1 GLN B 211 1555 1555 2.75 LINK NA NA B 1 O2 EDO B 364 1555 1555 2.77 SITE 1 AC1 6 TYR A 107 PRO A 109 PHE A 132 THR A 135 SITE 2 AC1 6 VAL A 136 THR A 140 SITE 1 AC2 7 TYR A 80 ASP A 158 ARG A 214 PHE A 264 SITE 2 AC2 7 ASP A 289 GLN A 309 HOH A 378 SITE 1 AC3 4 HIS B 75 THR B 82 GLN B 85 ARG B 89 SITE 1 AC4 6 ASP A 341 LEU A 342 ASN A 347 ASP B 341 SITE 2 AC4 6 LEU B 342 ASN B 347 SITE 1 AC5 6 NA B 1 TYR B 110 LYS B 200 GLN B 211 SITE 2 AC5 6 ASN B 265 SER B 266 SITE 1 AC6 5 ASP B 158 GLN B 210 ARG B 214 ASP B 289 SITE 2 AC6 5 GLN B 309 SITE 1 AC7 5 TYR B 110 LYS B 200 ILE B 206 GLN B 211 SITE 2 AC7 5 EDO B 364 CRYST1 43.976 240.568 119.214 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022740 0.000000 0.000000 0.00000 SCALE2 0.000000 0.004157 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008388 0.00000