data_3GD8 # _entry.id 3GD8 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3GD8 pdb_00003gd8 10.2210/pdb3gd8/pdb RCSB RCSB051714 ? ? WWPDB D_1000051714 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-03-31 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2020-07-29 4 'Structure model' 1 3 2024-02-21 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 3 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Structure summary' 6 4 'Structure model' 'Data collection' 7 4 'Structure model' 'Database references' 8 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp 2 3 'Structure model' entity 3 3 'Structure model' pdbx_chem_comp_identifier 4 3 'Structure model' pdbx_entity_nonpoly 5 3 'Structure model' struct_site 6 3 'Structure model' struct_site_gen 7 4 'Structure model' chem_comp 8 4 'Structure model' chem_comp_atom 9 4 'Structure model' chem_comp_bond 10 4 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_chem_comp.mon_nstd_flag' 2 3 'Structure model' '_chem_comp.name' 3 3 'Structure model' '_chem_comp.type' 4 3 'Structure model' '_entity.pdbx_description' 5 3 'Structure model' '_pdbx_entity_nonpoly.name' 6 4 'Structure model' '_chem_comp.pdbx_synonyms' 7 4 'Structure model' '_database_2.pdbx_DOI' 8 4 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3GD8 _pdbx_database_status.recvd_initial_deposition_date 2009-02-23 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id 1070S _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Ho, J.D.' 1 'Yeh, R.' 2 'Sandstrom, A.' 3 'Chorny, I.' 4 'Harries, W.E.C.' 5 'Robbins, R.A.' 6 'Miercke, L.J.W.' 7 'Stroud, R.M.' 8 'Center for Structures of Membrane Proteins (CSMP)' 9 # _citation.id primary _citation.title 'Crystal structure of human aquaporin 4 at 1.8 A and its mechanism of conductance.' _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_volume 106 _citation.page_first 7437 _citation.page_last 7442 _citation.year 2009 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 19383790 _citation.pdbx_database_id_DOI 10.1073/pnas.0902725106 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ho, J.D.' 1 ? primary 'Yeh, R.' 2 ? primary 'Sandstrom, A.' 3 ? primary 'Chorny, I.' 4 ? primary 'Harries, W.E.' 5 ? primary 'Robbins, R.A.' 6 ? primary 'Miercke, L.J.' 7 ? primary 'Stroud, R.M.' 8 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Aquaporin-4 23526.744 1 ? ? 'hAQP4 trypsinized (residue 32-254)' ? 2 non-polymer syn GLYCEROL 92.094 5 ? ? ? ? 3 non-polymer man 'octyl beta-D-glucopyranoside' 292.369 1 ? ? ? ? 4 water nat water 18.015 62 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'AQP-4, WCH4, Mercurial-insensitive water channel, MIWC' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;QAFWKAVTAEFLAMLIFVLLSLGSTINWGGTEKPLPVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKIS IAKSVFYIAAQCLGAIIGAGILYLVTPPSVVGGLGVTMVHGNLTAGHGLLVELIITFQLVFTIFASCDSKRTDVTGSIAL AIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGGLYEYVFCP ; _entity_poly.pdbx_seq_one_letter_code_can ;QAFWKAVTAEFLAMLIFVLLSLGSTINWGGTEKPLPVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKIS IAKSVFYIAAQCLGAIIGAGILYLVTPPSVVGGLGVTMVHGNLTAGHGLLVELIITFQLVFTIFASCDSKRTDVTGSIAL AIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGGLYEYVFCP ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier 1070S # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 GLYCEROL GOL 3 'octyl beta-D-glucopyranoside' BOG 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLN n 1 2 ALA n 1 3 PHE n 1 4 TRP n 1 5 LYS n 1 6 ALA n 1 7 VAL n 1 8 THR n 1 9 ALA n 1 10 GLU n 1 11 PHE n 1 12 LEU n 1 13 ALA n 1 14 MET n 1 15 LEU n 1 16 ILE n 1 17 PHE n 1 18 VAL n 1 19 LEU n 1 20 LEU n 1 21 SER n 1 22 LEU n 1 23 GLY n 1 24 SER n 1 25 THR n 1 26 ILE n 1 27 ASN n 1 28 TRP n 1 29 GLY n 1 30 GLY n 1 31 THR n 1 32 GLU n 1 33 LYS n 1 34 PRO n 1 35 LEU n 1 36 PRO n 1 37 VAL n 1 38 ASP n 1 39 MET n 1 40 VAL n 1 41 LEU n 1 42 ILE n 1 43 SER n 1 44 LEU n 1 45 CYS n 1 46 PHE n 1 47 GLY n 1 48 LEU n 1 49 SER n 1 50 ILE n 1 51 ALA n 1 52 THR n 1 53 MET n 1 54 VAL n 1 55 GLN n 1 56 CYS n 1 57 PHE n 1 58 GLY n 1 59 HIS n 1 60 ILE n 1 61 SER n 1 62 GLY n 1 63 GLY n 1 64 HIS n 1 65 ILE n 1 66 ASN n 1 67 PRO n 1 68 ALA n 1 69 VAL n 1 70 THR n 1 71 VAL n 1 72 ALA n 1 73 MET n 1 74 VAL n 1 75 CYS n 1 76 THR n 1 77 ARG n 1 78 LYS n 1 79 ILE n 1 80 SER n 1 81 ILE n 1 82 ALA n 1 83 LYS n 1 84 SER n 1 85 VAL n 1 86 PHE n 1 87 TYR n 1 88 ILE n 1 89 ALA n 1 90 ALA n 1 91 GLN n 1 92 CYS n 1 93 LEU n 1 94 GLY n 1 95 ALA n 1 96 ILE n 1 97 ILE n 1 98 GLY n 1 99 ALA n 1 100 GLY n 1 101 ILE n 1 102 LEU n 1 103 TYR n 1 104 LEU n 1 105 VAL n 1 106 THR n 1 107 PRO n 1 108 PRO n 1 109 SER n 1 110 VAL n 1 111 VAL n 1 112 GLY n 1 113 GLY n 1 114 LEU n 1 115 GLY n 1 116 VAL n 1 117 THR n 1 118 MET n 1 119 VAL n 1 120 HIS n 1 121 GLY n 1 122 ASN n 1 123 LEU n 1 124 THR n 1 125 ALA n 1 126 GLY n 1 127 HIS n 1 128 GLY n 1 129 LEU n 1 130 LEU n 1 131 VAL n 1 132 GLU n 1 133 LEU n 1 134 ILE n 1 135 ILE n 1 136 THR n 1 137 PHE n 1 138 GLN n 1 139 LEU n 1 140 VAL n 1 141 PHE n 1 142 THR n 1 143 ILE n 1 144 PHE n 1 145 ALA n 1 146 SER n 1 147 CYS n 1 148 ASP n 1 149 SER n 1 150 LYS n 1 151 ARG n 1 152 THR n 1 153 ASP n 1 154 VAL n 1 155 THR n 1 156 GLY n 1 157 SER n 1 158 ILE n 1 159 ALA n 1 160 LEU n 1 161 ALA n 1 162 ILE n 1 163 GLY n 1 164 PHE n 1 165 SER n 1 166 VAL n 1 167 ALA n 1 168 ILE n 1 169 GLY n 1 170 HIS n 1 171 LEU n 1 172 PHE n 1 173 ALA n 1 174 ILE n 1 175 ASN n 1 176 TYR n 1 177 THR n 1 178 GLY n 1 179 ALA n 1 180 SER n 1 181 MET n 1 182 ASN n 1 183 PRO n 1 184 ALA n 1 185 ARG n 1 186 SER n 1 187 PHE n 1 188 GLY n 1 189 PRO n 1 190 ALA n 1 191 VAL n 1 192 ILE n 1 193 MET n 1 194 GLY n 1 195 ASN n 1 196 TRP n 1 197 GLU n 1 198 ASN n 1 199 HIS n 1 200 TRP n 1 201 ILE n 1 202 TYR n 1 203 TRP n 1 204 VAL n 1 205 GLY n 1 206 PRO n 1 207 ILE n 1 208 ILE n 1 209 GLY n 1 210 ALA n 1 211 VAL n 1 212 LEU n 1 213 ALA n 1 214 GLY n 1 215 GLY n 1 216 LEU n 1 217 TYR n 1 218 GLU n 1 219 TYR n 1 220 VAL n 1 221 PHE n 1 222 CYS n 1 223 PRO n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene AQP4 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Pichia pastoris' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 4922 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain X-33 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ppICZ _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BOG D-saccharide n 'octyl beta-D-glucopyranoside' 'Beta-Octylglucoside; octyl beta-D-glucoside; octyl D-glucoside; octyl glucoside' 'C14 H28 O6' 292.369 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _pdbx_chem_comp_identifier.comp_id BOG _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1.0 _pdbx_chem_comp_identifier.identifier b-octylglucoside # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLN 1 32 32 GLN GLN A . n A 1 2 ALA 2 33 33 ALA ALA A . n A 1 3 PHE 3 34 34 PHE PHE A . n A 1 4 TRP 4 35 35 TRP TRP A . n A 1 5 LYS 5 36 36 LYS LYS A . n A 1 6 ALA 6 37 37 ALA ALA A . n A 1 7 VAL 7 38 38 VAL VAL A . n A 1 8 THR 8 39 39 THR THR A . n A 1 9 ALA 9 40 40 ALA ALA A . n A 1 10 GLU 10 41 41 GLU GLU A . n A 1 11 PHE 11 42 42 PHE PHE A . n A 1 12 LEU 12 43 43 LEU LEU A . n A 1 13 ALA 13 44 44 ALA ALA A . n A 1 14 MET 14 45 45 MET MET A . n A 1 15 LEU 15 46 46 LEU LEU A . n A 1 16 ILE 16 47 47 ILE ILE A . n A 1 17 PHE 17 48 48 PHE PHE A . n A 1 18 VAL 18 49 49 VAL VAL A . n A 1 19 LEU 19 50 50 LEU LEU A . n A 1 20 LEU 20 51 51 LEU LEU A . n A 1 21 SER 21 52 52 SER SER A . n A 1 22 LEU 22 53 53 LEU LEU A . n A 1 23 GLY 23 54 54 GLY GLY A . n A 1 24 SER 24 55 55 SER SER A . n A 1 25 THR 25 56 56 THR THR A . n A 1 26 ILE 26 57 57 ILE ILE A . n A 1 27 ASN 27 58 58 ASN ASN A . n A 1 28 TRP 28 59 59 TRP TRP A . n A 1 29 GLY 29 60 60 GLY GLY A . n A 1 30 GLY 30 61 61 GLY GLY A . n A 1 31 THR 31 62 62 THR THR A . n A 1 32 GLU 32 63 63 GLU GLU A . n A 1 33 LYS 33 64 64 LYS LYS A . n A 1 34 PRO 34 65 65 PRO PRO A . n A 1 35 LEU 35 66 66 LEU LEU A . n A 1 36 PRO 36 67 67 PRO PRO A . n A 1 37 VAL 37 68 68 VAL VAL A . n A 1 38 ASP 38 69 69 ASP ASP A . n A 1 39 MET 39 70 70 MET MET A . n A 1 40 VAL 40 71 71 VAL VAL A . n A 1 41 LEU 41 72 72 LEU LEU A . n A 1 42 ILE 42 73 73 ILE ILE A . n A 1 43 SER 43 74 74 SER SER A . n A 1 44 LEU 44 75 75 LEU LEU A . n A 1 45 CYS 45 76 76 CYS CYS A . n A 1 46 PHE 46 77 77 PHE PHE A . n A 1 47 GLY 47 78 78 GLY GLY A . n A 1 48 LEU 48 79 79 LEU LEU A . n A 1 49 SER 49 80 80 SER SER A . n A 1 50 ILE 50 81 81 ILE ILE A . n A 1 51 ALA 51 82 82 ALA ALA A . n A 1 52 THR 52 83 83 THR THR A . n A 1 53 MET 53 84 84 MET MET A . n A 1 54 VAL 54 85 85 VAL VAL A . n A 1 55 GLN 55 86 86 GLN GLN A . n A 1 56 CYS 56 87 87 CYS CYS A . n A 1 57 PHE 57 88 88 PHE PHE A . n A 1 58 GLY 58 89 89 GLY GLY A . n A 1 59 HIS 59 90 90 HIS HIS A . n A 1 60 ILE 60 91 91 ILE ILE A . n A 1 61 SER 61 92 92 SER SER A . n A 1 62 GLY 62 93 93 GLY GLY A . n A 1 63 GLY 63 94 94 GLY GLY A . n A 1 64 HIS 64 95 95 HIS HIS A . n A 1 65 ILE 65 96 96 ILE ILE A . n A 1 66 ASN 66 97 97 ASN ASN A . n A 1 67 PRO 67 98 98 PRO PRO A . n A 1 68 ALA 68 99 99 ALA ALA A . n A 1 69 VAL 69 100 100 VAL VAL A . n A 1 70 THR 70 101 101 THR THR A . n A 1 71 VAL 71 102 102 VAL VAL A . n A 1 72 ALA 72 103 103 ALA ALA A . n A 1 73 MET 73 104 104 MET MET A . n A 1 74 VAL 74 105 105 VAL VAL A . n A 1 75 CYS 75 106 106 CYS CYS A . n A 1 76 THR 76 107 107 THR THR A . n A 1 77 ARG 77 108 108 ARG ARG A . n A 1 78 LYS 78 109 109 LYS LYS A . n A 1 79 ILE 79 110 110 ILE ILE A . n A 1 80 SER 80 111 111 SER SER A . n A 1 81 ILE 81 112 112 ILE ILE A . n A 1 82 ALA 82 113 113 ALA ALA A . n A 1 83 LYS 83 114 114 LYS LYS A . n A 1 84 SER 84 115 115 SER SER A . n A 1 85 VAL 85 116 116 VAL VAL A . n A 1 86 PHE 86 117 117 PHE PHE A . n A 1 87 TYR 87 118 118 TYR TYR A . n A 1 88 ILE 88 119 119 ILE ILE A . n A 1 89 ALA 89 120 120 ALA ALA A . n A 1 90 ALA 90 121 121 ALA ALA A . n A 1 91 GLN 91 122 122 GLN GLN A . n A 1 92 CYS 92 123 123 CYS CYS A . n A 1 93 LEU 93 124 124 LEU LEU A . n A 1 94 GLY 94 125 125 GLY GLY A . n A 1 95 ALA 95 126 126 ALA ALA A . n A 1 96 ILE 96 127 127 ILE ILE A . n A 1 97 ILE 97 128 128 ILE ILE A . n A 1 98 GLY 98 129 129 GLY GLY A . n A 1 99 ALA 99 130 130 ALA ALA A . n A 1 100 GLY 100 131 131 GLY GLY A . n A 1 101 ILE 101 132 132 ILE ILE A . n A 1 102 LEU 102 133 133 LEU LEU A . n A 1 103 TYR 103 134 134 TYR TYR A . n A 1 104 LEU 104 135 135 LEU LEU A . n A 1 105 VAL 105 136 136 VAL VAL A . n A 1 106 THR 106 137 137 THR THR A . n A 1 107 PRO 107 138 138 PRO PRO A . n A 1 108 PRO 108 139 139 PRO PRO A . n A 1 109 SER 109 140 140 SER SER A . n A 1 110 VAL 110 141 141 VAL VAL A . n A 1 111 VAL 111 142 142 VAL VAL A . n A 1 112 GLY 112 143 143 GLY GLY A . n A 1 113 GLY 113 144 144 GLY GLY A . n A 1 114 LEU 114 145 145 LEU LEU A . n A 1 115 GLY 115 146 146 GLY GLY A . n A 1 116 VAL 116 147 147 VAL VAL A . n A 1 117 THR 117 148 148 THR THR A . n A 1 118 MET 118 149 149 MET MET A . n A 1 119 VAL 119 150 150 VAL VAL A . n A 1 120 HIS 120 151 151 HIS HIS A . n A 1 121 GLY 121 152 152 GLY GLY A . n A 1 122 ASN 122 153 153 ASN ASN A . n A 1 123 LEU 123 154 154 LEU LEU A . n A 1 124 THR 124 155 155 THR THR A . n A 1 125 ALA 125 156 156 ALA ALA A . n A 1 126 GLY 126 157 157 GLY GLY A . n A 1 127 HIS 127 158 158 HIS HIS A . n A 1 128 GLY 128 159 159 GLY GLY A . n A 1 129 LEU 129 160 160 LEU LEU A . n A 1 130 LEU 130 161 161 LEU LEU A . n A 1 131 VAL 131 162 162 VAL VAL A . n A 1 132 GLU 132 163 163 GLU GLU A . n A 1 133 LEU 133 164 164 LEU LEU A . n A 1 134 ILE 134 165 165 ILE ILE A . n A 1 135 ILE 135 166 166 ILE ILE A . n A 1 136 THR 136 167 167 THR THR A . n A 1 137 PHE 137 168 168 PHE PHE A . n A 1 138 GLN 138 169 169 GLN GLN A . n A 1 139 LEU 139 170 170 LEU LEU A . n A 1 140 VAL 140 171 171 VAL VAL A . n A 1 141 PHE 141 172 172 PHE PHE A . n A 1 142 THR 142 173 173 THR THR A . n A 1 143 ILE 143 174 174 ILE ILE A . n A 1 144 PHE 144 175 175 PHE PHE A . n A 1 145 ALA 145 176 176 ALA ALA A . n A 1 146 SER 146 177 177 SER SER A . n A 1 147 CYS 147 178 178 CYS CYS A . n A 1 148 ASP 148 179 179 ASP ASP A . n A 1 149 SER 149 180 180 SER SER A . n A 1 150 LYS 150 181 181 LYS LYS A . n A 1 151 ARG 151 182 182 ARG ARG A . n A 1 152 THR 152 183 183 THR THR A . n A 1 153 ASP 153 184 184 ASP ASP A . n A 1 154 VAL 154 185 185 VAL VAL A . n A 1 155 THR 155 186 186 THR THR A . n A 1 156 GLY 156 187 187 GLY GLY A . n A 1 157 SER 157 188 188 SER SER A . n A 1 158 ILE 158 189 189 ILE ILE A . n A 1 159 ALA 159 190 190 ALA ALA A . n A 1 160 LEU 160 191 191 LEU LEU A . n A 1 161 ALA 161 192 192 ALA ALA A . n A 1 162 ILE 162 193 193 ILE ILE A . n A 1 163 GLY 163 194 194 GLY GLY A . n A 1 164 PHE 164 195 195 PHE PHE A . n A 1 165 SER 165 196 196 SER SER A . n A 1 166 VAL 166 197 197 VAL VAL A . n A 1 167 ALA 167 198 198 ALA ALA A . n A 1 168 ILE 168 199 199 ILE ILE A . n A 1 169 GLY 169 200 200 GLY GLY A . n A 1 170 HIS 170 201 201 HIS HIS A . n A 1 171 LEU 171 202 202 LEU LEU A . n A 1 172 PHE 172 203 203 PHE PHE A . n A 1 173 ALA 173 204 204 ALA ALA A . n A 1 174 ILE 174 205 205 ILE ILE A . n A 1 175 ASN 175 206 206 ASN ASN A . n A 1 176 TYR 176 207 207 TYR TYR A . n A 1 177 THR 177 208 208 THR THR A . n A 1 178 GLY 178 209 209 GLY GLY A . n A 1 179 ALA 179 210 210 ALA ALA A . n A 1 180 SER 180 211 211 SER SER A . n A 1 181 MET 181 212 212 MET MET A . n A 1 182 ASN 182 213 213 ASN ASN A . n A 1 183 PRO 183 214 214 PRO PRO A . n A 1 184 ALA 184 215 215 ALA ALA A . n A 1 185 ARG 185 216 216 ARG ARG A . n A 1 186 SER 186 217 217 SER SER A . n A 1 187 PHE 187 218 218 PHE PHE A . n A 1 188 GLY 188 219 219 GLY GLY A . n A 1 189 PRO 189 220 220 PRO PRO A . n A 1 190 ALA 190 221 221 ALA ALA A . n A 1 191 VAL 191 222 222 VAL VAL A . n A 1 192 ILE 192 223 223 ILE ILE A . n A 1 193 MET 193 224 224 MET MET A . n A 1 194 GLY 194 225 225 GLY GLY A . n A 1 195 ASN 195 226 226 ASN ASN A . n A 1 196 TRP 196 227 227 TRP TRP A . n A 1 197 GLU 197 228 228 GLU GLU A . n A 1 198 ASN 198 229 229 ASN ASN A . n A 1 199 HIS 199 230 230 HIS HIS A . n A 1 200 TRP 200 231 231 TRP TRP A . n A 1 201 ILE 201 232 232 ILE ILE A . n A 1 202 TYR 202 233 233 TYR TYR A . n A 1 203 TRP 203 234 234 TRP TRP A . n A 1 204 VAL 204 235 235 VAL VAL A . n A 1 205 GLY 205 236 236 GLY GLY A . n A 1 206 PRO 206 237 237 PRO PRO A . n A 1 207 ILE 207 238 238 ILE ILE A . n A 1 208 ILE 208 239 239 ILE ILE A . n A 1 209 GLY 209 240 240 GLY GLY A . n A 1 210 ALA 210 241 241 ALA ALA A . n A 1 211 VAL 211 242 242 VAL VAL A . n A 1 212 LEU 212 243 243 LEU LEU A . n A 1 213 ALA 213 244 244 ALA ALA A . n A 1 214 GLY 214 245 245 GLY GLY A . n A 1 215 GLY 215 246 246 GLY GLY A . n A 1 216 LEU 216 247 247 LEU LEU A . n A 1 217 TYR 217 248 248 TYR TYR A . n A 1 218 GLU 218 249 249 GLU GLU A . n A 1 219 TYR 219 250 250 TYR TYR A . n A 1 220 VAL 220 251 251 VAL VAL A . n A 1 221 PHE 221 252 252 PHE PHE A . n A 1 222 CYS 222 253 253 CYS CYS A . n A 1 223 PRO 223 254 254 PRO PRO A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL 1 1 1 GOL GOL A . C 2 GOL 1 2 2 GOL GOL A . D 2 GOL 1 3 3 GOL GOL A . E 2 GOL 1 4 4 GOL GOL A . F 2 GOL 1 6 6 GOL GOL A . G 3 BOG 1 473 473 BOG BOG A . H 4 HOH 1 5 5 HOH HOH A . H 4 HOH 2 7 7 HOH HOH A . H 4 HOH 3 8 8 HOH HOH A . H 4 HOH 4 9 9 HOH HOH A . H 4 HOH 5 10 10 HOH HOH A . H 4 HOH 6 11 11 HOH HOH A . H 4 HOH 7 12 12 HOH HOH A . H 4 HOH 8 13 13 HOH HOH A . H 4 HOH 9 14 14 HOH HOH A . H 4 HOH 10 15 15 HOH HOH A . H 4 HOH 11 16 16 HOH HOH A . H 4 HOH 12 17 17 HOH HOH A . H 4 HOH 13 18 18 HOH HOH A . H 4 HOH 14 19 19 HOH HOH A . H 4 HOH 15 20 20 HOH HOH A . H 4 HOH 16 21 21 HOH HOH A . H 4 HOH 17 22 22 HOH HOH A . H 4 HOH 18 23 23 HOH HOH A . H 4 HOH 19 24 24 HOH HOH A . H 4 HOH 20 25 25 HOH HOH A . H 4 HOH 21 26 26 HOH HOH A . H 4 HOH 22 27 27 HOH HOH A . H 4 HOH 23 28 28 HOH HOH A . H 4 HOH 24 29 29 HOH HOH A . H 4 HOH 25 30 30 HOH HOH A . H 4 HOH 26 31 31 HOH HOH A . H 4 HOH 27 255 1 HOH HOH A . H 4 HOH 28 256 2 HOH HOH A . H 4 HOH 29 257 3 HOH HOH A . H 4 HOH 30 258 4 HOH HOH A . H 4 HOH 31 259 6 HOH HOH A . H 4 HOH 32 260 32 HOH HOH A . H 4 HOH 33 261 33 HOH HOH A . H 4 HOH 34 262 34 HOH HOH A . H 4 HOH 35 263 35 HOH HOH A . H 4 HOH 36 264 36 HOH HOH A . H 4 HOH 37 265 37 HOH HOH A . H 4 HOH 38 266 38 HOH HOH A . H 4 HOH 39 267 39 HOH HOH A . H 4 HOH 40 268 40 HOH HOH A . H 4 HOH 41 269 47 HOH HOH A . H 4 HOH 42 270 50 HOH HOH A . H 4 HOH 43 271 52 HOH HOH A . H 4 HOH 44 272 53 HOH HOH A . H 4 HOH 45 273 54 HOH HOH A . H 4 HOH 46 274 55 HOH HOH A . H 4 HOH 47 275 56 HOH HOH A . H 4 HOH 48 276 57 HOH HOH A . H 4 HOH 49 277 60 HOH HOH A . H 4 HOH 50 278 61 HOH HOH A . H 4 HOH 51 279 62 HOH HOH A . H 4 HOH 52 280 63 HOH HOH A . H 4 HOH 53 281 65 HOH HOH A . H 4 HOH 54 282 66 HOH HOH A . H 4 HOH 55 283 67 HOH HOH A . H 4 HOH 56 284 68 HOH HOH A . H 4 HOH 57 285 69 HOH HOH A . H 4 HOH 58 286 70 HOH HOH A . H 4 HOH 59 287 71 HOH HOH A . H 4 HOH 60 288 72 HOH HOH A . H 4 HOH 61 289 73 HOH HOH A . H 4 HOH 62 290 74 HOH HOH A . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal Blu-Ice 'data collection' . ? 1 PHASER phasing . ? 2 REFMAC refinement 5.2.0019 ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # _cell.entry_id 3GD8 _cell.length_a 82.058 _cell.length_b 82.058 _cell.length_c 76.353 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3GD8 _symmetry.space_group_name_H-M 'P 4 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 90 _symmetry.space_group_name_Hall ? # _exptl.entry_id 3GD8 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.73 _exptl_crystal.density_percent_sol 54.97 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '25% PEG-2K-MME, 50mM Citrate, pH 6.0, 40mM OG, 5% glycerol, VAPOR DIFFUSION, SITTING DROP, temperature 298K' # _diffrn.id 1 _diffrn.ambient_temp 77 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2008-01-01 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.11 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ALS BEAMLINE 8.3.1' _diffrn_source.pdbx_synchrotron_site ALS _diffrn_source.pdbx_synchrotron_beamline 8.3.1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.11 # _reflns.entry_id 3GD8 _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low ? _reflns.d_resolution_high 1.6 _reflns.number_obs 23583 _reflns.number_all 23583 _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 12 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 3GD8 _refine.ls_number_reflns_obs 23583 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 36.13 _refine.ls_d_res_high 1.80 _refine.ls_percent_reflns_obs 99.83 _refine.ls_R_factor_obs 0.15990 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.15966 _refine.ls_R_factor_R_free 0.16453 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 1265 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.959 _refine.correlation_coeff_Fo_to_Fc_free 0.962 _refine.B_iso_mean 21.212 _refine.aniso_B[1][1] -0.21 _refine.aniso_B[2][2] -0.21 _refine.aniso_B[3][3] 0.42 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.096 _refine.pdbx_overall_ESU_R_Free 0.083 _refine.overall_SU_ML 0.047 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 3.241 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1654 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 50 _refine_hist.number_atoms_solvent 62 _refine_hist.number_atoms_total 1766 _refine_hist.d_res_high 1.80 _refine_hist.d_res_low 36.13 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.009 0.022 ? 1757 'X-RAY DIFFRACTION' ? r_bond_other_d 0.001 0.020 ? 1136 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.047 1.967 ? 2390 'X-RAY DIFFRACTION' ? r_angle_other_deg 0.900 3.000 ? 2794 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.179 5.000 ? 226 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 30.498 23.077 ? 52 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 12.978 15.000 ? 259 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 21.784 15.000 ? 3 'X-RAY DIFFRACTION' ? r_chiral_restr 0.066 0.200 ? 286 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.004 0.021 ? 1900 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.001 0.020 ? 354 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.130 0.200 ? 57 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.090 0.200 ? 7 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 0.197 0.200 ? 54 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.152 0.200 ? 6 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.392 1.500 ? 1106 'X-RAY DIFFRACTION' ? r_mcbond_other 0.121 1.500 ? 465 'X-RAY DIFFRACTION' ? r_mcangle_it 0.709 2.000 ? 1784 'X-RAY DIFFRACTION' ? r_scbond_it 1.314 3.000 ? 651 'X-RAY DIFFRACTION' ? r_scangle_it 2.054 4.500 ? 605 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.798 _refine_ls_shell.d_res_low 1.845 _refine_ls_shell.number_reflns_R_work 1706 _refine_ls_shell.R_factor_R_work 0.179 _refine_ls_shell.percent_reflns_obs 98.90 _refine_ls_shell.R_factor_R_free 0.182 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 86 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_obs ? # _database_PDB_matrix.entry_id 3GD8 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 3GD8 _struct.title 'Crystal Structure of Human Aquaporin 4 at 1.8 and its Mechanism of Conductance' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3GD8 _struct_keywords.pdbx_keywords 'MEMBRANE PROTEIN' _struct_keywords.text ;brain edema, aquaporin, proton exclusion, Structural Genomics, PSI-2, Protein Structure Initiative, Center for Structures of Membrane Proteins, CSMP, Glycoprotein, Membrane, Phosphoprotein, Transmembrane, Transport, MEMBRANE PROTEIN ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 3 ? H N N 4 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code AQP4_HUMAN _struct_ref.pdbx_db_accession P55087 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;QAFWKAVTAEFLAMLIFVLLSLGSTINWGGTEKPLPVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKIS IAKSVFYIAAQCLGAIIGAGILYLVTPPSVVGGLGVTMVHGNLTAGHGLLVELIITFQLVFTIFASCDSKRTDVTGSIAL AIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGGLYEYVFCP ; _struct_ref.pdbx_align_begin 32 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3GD8 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 223 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P55087 _struct_ref_seq.db_align_beg 32 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 254 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 32 _struct_ref_seq.pdbx_auth_seq_align_end 254 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 19000 ? 1 MORE -134 ? 1 'SSA (A^2)' 28730 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_545 -x,-y-1,z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 -82.0580000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_445 -y-1/2,x-1/2,z 0.0000000000 -1.0000000000 0.0000000000 -41.0290000000 1.0000000000 0.0000000000 0.0000000000 -41.0290000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 4 'crystal symmetry operation' 4_545 y+1/2,-x-1/2,z 0.0000000000 1.0000000000 0.0000000000 41.0290000000 -1.0000000000 0.0000000000 0.0000000000 -41.0290000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # _struct_biol.id 1 _struct_biol.details 'Tetramer is generated by the 4 fold axis.' # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLN A 1 ? THR A 25 ? GLN A 32 THR A 56 1 ? 25 HELX_P HELX_P2 2 ASP A 38 ? GLY A 62 ? ASP A 69 GLY A 93 1 ? 25 HELX_P HELX_P3 3 ASN A 66 ? THR A 76 ? ASN A 97 THR A 107 1 ? 11 HELX_P HELX_P4 4 SER A 80 ? THR A 106 ? SER A 111 THR A 137 1 ? 27 HELX_P HELX_P5 5 PRO A 107 ? GLY A 112 ? PRO A 138 GLY A 143 1 ? 6 HELX_P HELX_P6 6 THR A 124 ? CYS A 147 ? THR A 155 CYS A 178 1 ? 24 HELX_P HELX_P7 7 SER A 157 ? GLY A 178 ? SER A 188 GLY A 209 1 ? 22 HELX_P HELX_P8 8 ASN A 182 ? GLY A 194 ? ASN A 213 GLY A 225 1 ? 13 HELX_P HELX_P9 9 TRP A 200 ? VAL A 220 ? TRP A 231 VAL A 251 1 ? 21 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 97 ? ? -175.99 111.83 2 1 ASN A 97 ? ? -175.57 111.83 3 1 MET A 212 ? ? 58.79 9.27 4 1 MET A 212 ? ? 56.68 11.36 5 1 ASN A 213 ? ? -164.40 100.07 # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Center for Structures of Membrane Proteins' _pdbx_SG_project.initial_of_center CSMP # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 18 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id H _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.pdbx_refine_id 1 ? refined -0.5880 -10.7350 4.1430 0.1678 0.0709 0.1616 0.0548 0.0056 0.1317 58.6122 51.2100 97.5897 0.0000 0.0000 0.0000 0.5839 0.9804 -1.5643 1.1593 2.9200 1.2543 0.5241 -2.0218 -1.2571 'X-RAY DIFFRACTION' 2 ? refined -1.1360 -16.3790 14.8170 0.0303 -0.0316 -0.0206 0.0023 -0.0094 0.0374 1.5268 4.8769 4.9459 0.1417 -0.6626 -1.0133 -0.0448 0.1599 -0.1152 0.1796 0.2734 -0.0523 -0.1532 -0.2907 -0.2835 'X-RAY DIFFRACTION' 3 ? refined -1.8270 -24.4100 30.1000 -0.0722 -0.0874 -0.0657 -0.0086 0.0015 -0.0221 3.6824 2.6757 7.0618 -0.8426 -1.8584 0.8197 -0.0473 -0.0212 0.0686 -0.2199 0.0926 0.0320 0.0896 -0.0205 -0.0528 'X-RAY DIFFRACTION' 4 ? refined -0.7670 -25.7080 46.2830 0.7576 0.7699 0.3729 0.0460 0.1165 -0.2119 51.0506 73.3913 82.7938 2.7984 -8.4317 5.2320 1.2514 0.0770 -1.3285 -5.9029 2.3218 -2.0560 5.0672 -2.1399 2.6216 'X-RAY DIFFRACTION' 5 ? refined 2.2170 -34.2780 36.1930 0.1614 0.3762 -0.0164 0.1357 0.0264 -0.0320 28.2222 21.2315 82.8711 -4.7260 16.2630 7.6105 -1.0308 0.3743 0.6566 -3.5912 0.3302 0.2244 1.9875 -1.7779 -2.8241 'X-RAY DIFFRACTION' 6 ? refined 0.0020 -27.7380 16.5900 -0.0674 -0.0865 -0.0857 -0.0058 0.0082 0.0107 1.5625 2.9065 5.8975 -0.7806 1.0517 -2.1987 -0.0324 -0.0102 0.0426 0.1305 0.1054 -0.0079 -0.1651 -0.1539 0.0199 'X-RAY DIFFRACTION' 7 ? refined 9.1410 -20.2050 13.5580 0.0166 -0.0396 -0.0515 -0.0193 0.0247 0.0446 7.0583 1.6588 6.4385 -0.5595 2.4442 -1.2497 0.0709 0.0922 -0.1632 0.1779 -0.0162 0.0412 -0.3188 -0.0080 -0.1090 'X-RAY DIFFRACTION' 8 ? refined 14.7690 -16.2900 5.7090 0.0716 0.1360 0.0069 -0.0440 0.0856 0.0989 8.6660 12.7926 10.8012 -6.9296 2.5390 -0.1866 0.3860 -0.5419 0.1559 0.7722 0.3942 -0.0662 -0.4293 -0.1966 0.2536 'X-RAY DIFFRACTION' 9 ? refined 3.2380 -12.4900 18.4860 0.0582 -0.0725 0.0095 -0.0026 0.0116 0.0405 4.1071 1.1662 9.8576 -0.7054 -5.1669 0.4683 0.1499 -0.0157 -0.1341 0.2452 0.3780 -0.0392 -0.1973 -0.5947 -0.2003 'X-RAY DIFFRACTION' 10 ? refined -2.2990 -18.1680 35.3940 -0.0168 -0.0360 -0.0087 0.0126 0.0273 -0.0358 4.5623 0.9071 1.5217 0.6574 -0.4769 0.0387 -0.0078 -0.0251 0.0329 -0.3027 0.3431 0.0765 0.1276 -0.2569 -0.1190 'X-RAY DIFFRACTION' 11 ? refined 17.3070 -25.4730 37.5600 -0.0267 -0.0490 -0.0191 -0.0307 -0.0171 -0.0596 20.4206 15.9608 0.0000 10.9028 -6.3191 0.0000 -0.3620 0.4641 -0.1021 -0.6643 0.4752 -0.4215 0.5784 -0.2410 -0.3279 'X-RAY DIFFRACTION' 12 ? refined 19.4480 -27.1220 23.7080 -0.0829 -0.0399 -0.0545 -0.0421 0.0083 0.0071 2.1035 2.0435 8.7454 0.6954 2.6710 1.9503 -0.0282 -0.0063 0.0345 0.0720 0.1198 -0.2452 0.0244 -0.1461 0.4528 'X-RAY DIFFRACTION' 13 ? refined 13.8010 -30.8200 9.3790 -0.0148 -0.0233 -0.0831 -0.0377 0.0324 0.0354 8.2750 4.4903 7.4915 -1.1222 3.7075 1.8162 0.0500 -0.0217 -0.0283 0.4925 0.2380 0.0433 -0.5423 -0.1472 0.2443 'X-RAY DIFFRACTION' 14 ? refined 11.9520 -35.3890 0.7290 0.1955 0.3089 -0.0407 -0.1176 0.0201 -0.0080 17.2494 11.0547 9.8179 7.0784 -0.4871 2.8137 -0.9275 0.7064 0.2212 1.8249 -0.3756 -0.2802 -1.3392 -0.1462 -0.1516 'X-RAY DIFFRACTION' 15 ? refined 5.2590 -34.8340 13.1960 -0.0611 -0.0688 -0.0813 -0.0007 0.0080 -0.0028 2.0423 1.5780 7.7878 1.1645 0.7193 2.4773 -0.0022 -0.1107 0.1129 0.1852 -0.0179 0.0269 -0.1522 0.2489 -0.1075 'X-RAY DIFFRACTION' 16 ? refined 12.0400 -31.5340 28.7410 -0.0972 -0.0974 -0.0979 -0.0200 0.0048 0.0034 4.3491 2.5704 3.9295 1.0469 2.5241 1.5938 -0.0040 -0.0261 0.0302 -0.1322 0.0714 0.0646 0.1749 0.0538 0.0328 'X-RAY DIFFRACTION' 17 ? refined 10.6140 -16.2870 28.5630 -0.0002 -0.0718 -0.0230 -0.0334 0.0055 -0.0049 2.6332 1.3571 2.2283 -0.3347 -0.8259 0.6941 0.0139 -0.0001 -0.0139 -0.1548 0.2453 -0.0453 0.0944 -0.2043 0.1630 'X-RAY DIFFRACTION' 18 ? refined 19.2480 -22.6700 16.6920 -0.0190 -0.0021 -0.0407 -0.0511 0.0376 0.0258 1.1957 2.9283 6.3176 -0.7363 -1.2545 3.4620 0.0106 0.0628 -0.0734 0.1223 0.1422 -0.1981 -0.3424 -0.2987 0.3243 'X-RAY DIFFRACTION' 19 ? refined 23.0670 -29.6330 3.7490 0.1332 0.2353 0.0723 -0.0600 0.1306 -0.0183 29.1347 15.9691 26.3279 4.5791 3.5176 -6.3769 -0.6827 0.5361 0.1467 1.4805 0.4427 -0.0241 -0.7471 -0.9542 0.6121 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.selection_details 1 1 A 32 A 36 ? . . . . 'X-RAY DIFFRACTION' ? 2 2 A 37 A 47 ? . . . . 'X-RAY DIFFRACTION' ? 3 3 A 48 A 59 ? . . . . 'X-RAY DIFFRACTION' ? 4 4 A 60 A 65 ? . . . . 'X-RAY DIFFRACTION' ? 5 5 A 66 A 71 ? . . . . 'X-RAY DIFFRACTION' ? 6 6 A 72 A 92 ? . . . . 'X-RAY DIFFRACTION' ? 7 7 A 93 A 102 ? . . . . 'X-RAY DIFFRACTION' ? 8 8 A 103 A 115 ? . . . . 'X-RAY DIFFRACTION' ? 9 9 A 116 A 132 ? . . . . 'X-RAY DIFFRACTION' ? 10 10 A 133 A 148 ? . . . . 'X-RAY DIFFRACTION' ? 11 11 A 149 A 154 ? . . . . 'X-RAY DIFFRACTION' ? 12 12 A 155 A 171 ? . . . . 'X-RAY DIFFRACTION' ? 13 13 A 172 A 177 ? . . . . 'X-RAY DIFFRACTION' ? 14 14 A 178 A 185 ? . . . . 'X-RAY DIFFRACTION' ? 15 15 A 186 A 197 ? . . . . 'X-RAY DIFFRACTION' ? 16 16 A 198 A 210 ? . . . . 'X-RAY DIFFRACTION' ? 17 17 A 211 A 232 ? . . . . 'X-RAY DIFFRACTION' ? 18 18 A 233 A 248 ? . . . . 'X-RAY DIFFRACTION' ? 19 19 A 249 A 254 ? . . . . 'X-RAY DIFFRACTION' ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 BOG C1 C N R 74 BOG O1 O N N 75 BOG C2 C N R 76 BOG O2 O N N 77 BOG C3 C N S 78 BOG O3 O N N 79 BOG C4 C N S 80 BOG O4 O N N 81 BOG C5 C N R 82 BOG O5 O N N 83 BOG C6 C N N 84 BOG O6 O N N 85 BOG "C1'" C N N 86 BOG "C2'" C N N 87 BOG "C3'" C N N 88 BOG "C4'" C N N 89 BOG "C5'" C N N 90 BOG "C6'" C N N 91 BOG "C7'" C N N 92 BOG "C8'" C N N 93 BOG H1 H N N 94 BOG H2 H N N 95 BOG HO2 H N N 96 BOG H3 H N N 97 BOG HO3 H N N 98 BOG H4 H N N 99 BOG HO4 H N N 100 BOG H5 H N N 101 BOG H61 H N N 102 BOG H62 H N N 103 BOG HO6 H N N 104 BOG "H1'1" H N N 105 BOG "H1'2" H N N 106 BOG "H2'1" H N N 107 BOG "H2'2" H N N 108 BOG "H3'1" H N N 109 BOG "H3'2" H N N 110 BOG "H4'1" H N N 111 BOG "H4'2" H N N 112 BOG "H5'1" H N N 113 BOG "H5'2" H N N 114 BOG "H6'1" H N N 115 BOG "H6'2" H N N 116 BOG "H7'1" H N N 117 BOG "H7'2" H N N 118 BOG "H8'1" H N N 119 BOG "H8'2" H N N 120 BOG "H8'3" H N N 121 CYS N N N N 122 CYS CA C N R 123 CYS C C N N 124 CYS O O N N 125 CYS CB C N N 126 CYS SG S N N 127 CYS OXT O N N 128 CYS H H N N 129 CYS H2 H N N 130 CYS HA H N N 131 CYS HB2 H N N 132 CYS HB3 H N N 133 CYS HG H N N 134 CYS HXT H N N 135 GLN N N N N 136 GLN CA C N S 137 GLN C C N N 138 GLN O O N N 139 GLN CB C N N 140 GLN CG C N N 141 GLN CD C N N 142 GLN OE1 O N N 143 GLN NE2 N N N 144 GLN OXT O N N 145 GLN H H N N 146 GLN H2 H N N 147 GLN HA H N N 148 GLN HB2 H N N 149 GLN HB3 H N N 150 GLN HG2 H N N 151 GLN HG3 H N N 152 GLN HE21 H N N 153 GLN HE22 H N N 154 GLN HXT H N N 155 GLU N N N N 156 GLU CA C N S 157 GLU C C N N 158 GLU O O N N 159 GLU CB C N N 160 GLU CG C N N 161 GLU CD C N N 162 GLU OE1 O N N 163 GLU OE2 O N N 164 GLU OXT O N N 165 GLU H H N N 166 GLU H2 H N N 167 GLU HA H N N 168 GLU HB2 H N N 169 GLU HB3 H N N 170 GLU HG2 H N N 171 GLU HG3 H N N 172 GLU HE2 H N N 173 GLU HXT H N N 174 GLY N N N N 175 GLY CA C N N 176 GLY C C N N 177 GLY O O N N 178 GLY OXT O N N 179 GLY H H N N 180 GLY H2 H N N 181 GLY HA2 H N N 182 GLY HA3 H N N 183 GLY HXT H N N 184 GOL C1 C N N 185 GOL O1 O N N 186 GOL C2 C N N 187 GOL O2 O N N 188 GOL C3 C N N 189 GOL O3 O N N 190 GOL H11 H N N 191 GOL H12 H N N 192 GOL HO1 H N N 193 GOL H2 H N N 194 GOL HO2 H N N 195 GOL H31 H N N 196 GOL H32 H N N 197 GOL HO3 H N N 198 HIS N N N N 199 HIS CA C N S 200 HIS C C N N 201 HIS O O N N 202 HIS CB C N N 203 HIS CG C Y N 204 HIS ND1 N Y N 205 HIS CD2 C Y N 206 HIS CE1 C Y N 207 HIS NE2 N Y N 208 HIS OXT O N N 209 HIS H H N N 210 HIS H2 H N N 211 HIS HA H N N 212 HIS HB2 H N N 213 HIS HB3 H N N 214 HIS HD1 H N N 215 HIS HD2 H N N 216 HIS HE1 H N N 217 HIS HE2 H N N 218 HIS HXT H N N 219 HOH O O N N 220 HOH H1 H N N 221 HOH H2 H N N 222 ILE N N N N 223 ILE CA C N S 224 ILE C C N N 225 ILE O O N N 226 ILE CB C N S 227 ILE CG1 C N N 228 ILE CG2 C N N 229 ILE CD1 C N N 230 ILE OXT O N N 231 ILE H H N N 232 ILE H2 H N N 233 ILE HA H N N 234 ILE HB H N N 235 ILE HG12 H N N 236 ILE HG13 H N N 237 ILE HG21 H N N 238 ILE HG22 H N N 239 ILE HG23 H N N 240 ILE HD11 H N N 241 ILE HD12 H N N 242 ILE HD13 H N N 243 ILE HXT H N N 244 LEU N N N N 245 LEU CA C N S 246 LEU C C N N 247 LEU O O N N 248 LEU CB C N N 249 LEU CG C N N 250 LEU CD1 C N N 251 LEU CD2 C N N 252 LEU OXT O N N 253 LEU H H N N 254 LEU H2 H N N 255 LEU HA H N N 256 LEU HB2 H N N 257 LEU HB3 H N N 258 LEU HG H N N 259 LEU HD11 H N N 260 LEU HD12 H N N 261 LEU HD13 H N N 262 LEU HD21 H N N 263 LEU HD22 H N N 264 LEU HD23 H N N 265 LEU HXT H N N 266 LYS N N N N 267 LYS CA C N S 268 LYS C C N N 269 LYS O O N N 270 LYS CB C N N 271 LYS CG C N N 272 LYS CD C N N 273 LYS CE C N N 274 LYS NZ N N N 275 LYS OXT O N N 276 LYS H H N N 277 LYS H2 H N N 278 LYS HA H N N 279 LYS HB2 H N N 280 LYS HB3 H N N 281 LYS HG2 H N N 282 LYS HG3 H N N 283 LYS HD2 H N N 284 LYS HD3 H N N 285 LYS HE2 H N N 286 LYS HE3 H N N 287 LYS HZ1 H N N 288 LYS HZ2 H N N 289 LYS HZ3 H N N 290 LYS HXT H N N 291 MET N N N N 292 MET CA C N S 293 MET C C N N 294 MET O O N N 295 MET CB C N N 296 MET CG C N N 297 MET SD S N N 298 MET CE C N N 299 MET OXT O N N 300 MET H H N N 301 MET H2 H N N 302 MET HA H N N 303 MET HB2 H N N 304 MET HB3 H N N 305 MET HG2 H N N 306 MET HG3 H N N 307 MET HE1 H N N 308 MET HE2 H N N 309 MET HE3 H N N 310 MET HXT H N N 311 PHE N N N N 312 PHE CA C N S 313 PHE C C N N 314 PHE O O N N 315 PHE CB C N N 316 PHE CG C Y N 317 PHE CD1 C Y N 318 PHE CD2 C Y N 319 PHE CE1 C Y N 320 PHE CE2 C Y N 321 PHE CZ C Y N 322 PHE OXT O N N 323 PHE H H N N 324 PHE H2 H N N 325 PHE HA H N N 326 PHE HB2 H N N 327 PHE HB3 H N N 328 PHE HD1 H N N 329 PHE HD2 H N N 330 PHE HE1 H N N 331 PHE HE2 H N N 332 PHE HZ H N N 333 PHE HXT H N N 334 PRO N N N N 335 PRO CA C N S 336 PRO C C N N 337 PRO O O N N 338 PRO CB C N N 339 PRO CG C N N 340 PRO CD C N N 341 PRO OXT O N N 342 PRO H H N N 343 PRO HA H N N 344 PRO HB2 H N N 345 PRO HB3 H N N 346 PRO HG2 H N N 347 PRO HG3 H N N 348 PRO HD2 H N N 349 PRO HD3 H N N 350 PRO HXT H N N 351 SER N N N N 352 SER CA C N S 353 SER C C N N 354 SER O O N N 355 SER CB C N N 356 SER OG O N N 357 SER OXT O N N 358 SER H H N N 359 SER H2 H N N 360 SER HA H N N 361 SER HB2 H N N 362 SER HB3 H N N 363 SER HG H N N 364 SER HXT H N N 365 THR N N N N 366 THR CA C N S 367 THR C C N N 368 THR O O N N 369 THR CB C N R 370 THR OG1 O N N 371 THR CG2 C N N 372 THR OXT O N N 373 THR H H N N 374 THR H2 H N N 375 THR HA H N N 376 THR HB H N N 377 THR HG1 H N N 378 THR HG21 H N N 379 THR HG22 H N N 380 THR HG23 H N N 381 THR HXT H N N 382 TRP N N N N 383 TRP CA C N S 384 TRP C C N N 385 TRP O O N N 386 TRP CB C N N 387 TRP CG C Y N 388 TRP CD1 C Y N 389 TRP CD2 C Y N 390 TRP NE1 N Y N 391 TRP CE2 C Y N 392 TRP CE3 C Y N 393 TRP CZ2 C Y N 394 TRP CZ3 C Y N 395 TRP CH2 C Y N 396 TRP OXT O N N 397 TRP H H N N 398 TRP H2 H N N 399 TRP HA H N N 400 TRP HB2 H N N 401 TRP HB3 H N N 402 TRP HD1 H N N 403 TRP HE1 H N N 404 TRP HE3 H N N 405 TRP HZ2 H N N 406 TRP HZ3 H N N 407 TRP HH2 H N N 408 TRP HXT H N N 409 TYR N N N N 410 TYR CA C N S 411 TYR C C N N 412 TYR O O N N 413 TYR CB C N N 414 TYR CG C Y N 415 TYR CD1 C Y N 416 TYR CD2 C Y N 417 TYR CE1 C Y N 418 TYR CE2 C Y N 419 TYR CZ C Y N 420 TYR OH O N N 421 TYR OXT O N N 422 TYR H H N N 423 TYR H2 H N N 424 TYR HA H N N 425 TYR HB2 H N N 426 TYR HB3 H N N 427 TYR HD1 H N N 428 TYR HD2 H N N 429 TYR HE1 H N N 430 TYR HE2 H N N 431 TYR HH H N N 432 TYR HXT H N N 433 VAL N N N N 434 VAL CA C N S 435 VAL C C N N 436 VAL O O N N 437 VAL CB C N N 438 VAL CG1 C N N 439 VAL CG2 C N N 440 VAL OXT O N N 441 VAL H H N N 442 VAL H2 H N N 443 VAL HA H N N 444 VAL HB H N N 445 VAL HG11 H N N 446 VAL HG12 H N N 447 VAL HG13 H N N 448 VAL HG21 H N N 449 VAL HG22 H N N 450 VAL HG23 H N N 451 VAL HXT H N N 452 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 BOG C1 O1 sing N N 70 BOG C1 C2 sing N N 71 BOG C1 O5 sing N N 72 BOG C1 H1 sing N N 73 BOG O1 "C1'" sing N N 74 BOG C2 O2 sing N N 75 BOG C2 C3 sing N N 76 BOG C2 H2 sing N N 77 BOG O2 HO2 sing N N 78 BOG C3 O3 sing N N 79 BOG C3 C4 sing N N 80 BOG C3 H3 sing N N 81 BOG O3 HO3 sing N N 82 BOG C4 O4 sing N N 83 BOG C4 C5 sing N N 84 BOG C4 H4 sing N N 85 BOG O4 HO4 sing N N 86 BOG C5 O5 sing N N 87 BOG C5 C6 sing N N 88 BOG C5 H5 sing N N 89 BOG C6 O6 sing N N 90 BOG C6 H61 sing N N 91 BOG C6 H62 sing N N 92 BOG O6 HO6 sing N N 93 BOG "C1'" "C2'" sing N N 94 BOG "C1'" "H1'1" sing N N 95 BOG "C1'" "H1'2" sing N N 96 BOG "C2'" "C3'" sing N N 97 BOG "C2'" "H2'1" sing N N 98 BOG "C2'" "H2'2" sing N N 99 BOG "C3'" "C4'" sing N N 100 BOG "C3'" "H3'1" sing N N 101 BOG "C3'" "H3'2" sing N N 102 BOG "C4'" "C5'" sing N N 103 BOG "C4'" "H4'1" sing N N 104 BOG "C4'" "H4'2" sing N N 105 BOG "C5'" "C6'" sing N N 106 BOG "C5'" "H5'1" sing N N 107 BOG "C5'" "H5'2" sing N N 108 BOG "C6'" "C7'" sing N N 109 BOG "C6'" "H6'1" sing N N 110 BOG "C6'" "H6'2" sing N N 111 BOG "C7'" "C8'" sing N N 112 BOG "C7'" "H7'1" sing N N 113 BOG "C7'" "H7'2" sing N N 114 BOG "C8'" "H8'1" sing N N 115 BOG "C8'" "H8'2" sing N N 116 BOG "C8'" "H8'3" sing N N 117 CYS N CA sing N N 118 CYS N H sing N N 119 CYS N H2 sing N N 120 CYS CA C sing N N 121 CYS CA CB sing N N 122 CYS CA HA sing N N 123 CYS C O doub N N 124 CYS C OXT sing N N 125 CYS CB SG sing N N 126 CYS CB HB2 sing N N 127 CYS CB HB3 sing N N 128 CYS SG HG sing N N 129 CYS OXT HXT sing N N 130 GLN N CA sing N N 131 GLN N H sing N N 132 GLN N H2 sing N N 133 GLN CA C sing N N 134 GLN CA CB sing N N 135 GLN CA HA sing N N 136 GLN C O doub N N 137 GLN C OXT sing N N 138 GLN CB CG sing N N 139 GLN CB HB2 sing N N 140 GLN CB HB3 sing N N 141 GLN CG CD sing N N 142 GLN CG HG2 sing N N 143 GLN CG HG3 sing N N 144 GLN CD OE1 doub N N 145 GLN CD NE2 sing N N 146 GLN NE2 HE21 sing N N 147 GLN NE2 HE22 sing N N 148 GLN OXT HXT sing N N 149 GLU N CA sing N N 150 GLU N H sing N N 151 GLU N H2 sing N N 152 GLU CA C sing N N 153 GLU CA CB sing N N 154 GLU CA HA sing N N 155 GLU C O doub N N 156 GLU C OXT sing N N 157 GLU CB CG sing N N 158 GLU CB HB2 sing N N 159 GLU CB HB3 sing N N 160 GLU CG CD sing N N 161 GLU CG HG2 sing N N 162 GLU CG HG3 sing N N 163 GLU CD OE1 doub N N 164 GLU CD OE2 sing N N 165 GLU OE2 HE2 sing N N 166 GLU OXT HXT sing N N 167 GLY N CA sing N N 168 GLY N H sing N N 169 GLY N H2 sing N N 170 GLY CA C sing N N 171 GLY CA HA2 sing N N 172 GLY CA HA3 sing N N 173 GLY C O doub N N 174 GLY C OXT sing N N 175 GLY OXT HXT sing N N 176 GOL C1 O1 sing N N 177 GOL C1 C2 sing N N 178 GOL C1 H11 sing N N 179 GOL C1 H12 sing N N 180 GOL O1 HO1 sing N N 181 GOL C2 O2 sing N N 182 GOL C2 C3 sing N N 183 GOL C2 H2 sing N N 184 GOL O2 HO2 sing N N 185 GOL C3 O3 sing N N 186 GOL C3 H31 sing N N 187 GOL C3 H32 sing N N 188 GOL O3 HO3 sing N N 189 HIS N CA sing N N 190 HIS N H sing N N 191 HIS N H2 sing N N 192 HIS CA C sing N N 193 HIS CA CB sing N N 194 HIS CA HA sing N N 195 HIS C O doub N N 196 HIS C OXT sing N N 197 HIS CB CG sing N N 198 HIS CB HB2 sing N N 199 HIS CB HB3 sing N N 200 HIS CG ND1 sing Y N 201 HIS CG CD2 doub Y N 202 HIS ND1 CE1 doub Y N 203 HIS ND1 HD1 sing N N 204 HIS CD2 NE2 sing Y N 205 HIS CD2 HD2 sing N N 206 HIS CE1 NE2 sing Y N 207 HIS CE1 HE1 sing N N 208 HIS NE2 HE2 sing N N 209 HIS OXT HXT sing N N 210 HOH O H1 sing N N 211 HOH O H2 sing N N 212 ILE N CA sing N N 213 ILE N H sing N N 214 ILE N H2 sing N N 215 ILE CA C sing N N 216 ILE CA CB sing N N 217 ILE CA HA sing N N 218 ILE C O doub N N 219 ILE C OXT sing N N 220 ILE CB CG1 sing N N 221 ILE CB CG2 sing N N 222 ILE CB HB sing N N 223 ILE CG1 CD1 sing N N 224 ILE CG1 HG12 sing N N 225 ILE CG1 HG13 sing N N 226 ILE CG2 HG21 sing N N 227 ILE CG2 HG22 sing N N 228 ILE CG2 HG23 sing N N 229 ILE CD1 HD11 sing N N 230 ILE CD1 HD12 sing N N 231 ILE CD1 HD13 sing N N 232 ILE OXT HXT sing N N 233 LEU N CA sing N N 234 LEU N H sing N N 235 LEU N H2 sing N N 236 LEU CA C sing N N 237 LEU CA CB sing N N 238 LEU CA HA sing N N 239 LEU C O doub N N 240 LEU C OXT sing N N 241 LEU CB CG sing N N 242 LEU CB HB2 sing N N 243 LEU CB HB3 sing N N 244 LEU CG CD1 sing N N 245 LEU CG CD2 sing N N 246 LEU CG HG sing N N 247 LEU CD1 HD11 sing N N 248 LEU CD1 HD12 sing N N 249 LEU CD1 HD13 sing N N 250 LEU CD2 HD21 sing N N 251 LEU CD2 HD22 sing N N 252 LEU CD2 HD23 sing N N 253 LEU OXT HXT sing N N 254 LYS N CA sing N N 255 LYS N H sing N N 256 LYS N H2 sing N N 257 LYS CA C sing N N 258 LYS CA CB sing N N 259 LYS CA HA sing N N 260 LYS C O doub N N 261 LYS C OXT sing N N 262 LYS CB CG sing N N 263 LYS CB HB2 sing N N 264 LYS CB HB3 sing N N 265 LYS CG CD sing N N 266 LYS CG HG2 sing N N 267 LYS CG HG3 sing N N 268 LYS CD CE sing N N 269 LYS CD HD2 sing N N 270 LYS CD HD3 sing N N 271 LYS CE NZ sing N N 272 LYS CE HE2 sing N N 273 LYS CE HE3 sing N N 274 LYS NZ HZ1 sing N N 275 LYS NZ HZ2 sing N N 276 LYS NZ HZ3 sing N N 277 LYS OXT HXT sing N N 278 MET N CA sing N N 279 MET N H sing N N 280 MET N H2 sing N N 281 MET CA C sing N N 282 MET CA CB sing N N 283 MET CA HA sing N N 284 MET C O doub N N 285 MET C OXT sing N N 286 MET CB CG sing N N 287 MET CB HB2 sing N N 288 MET CB HB3 sing N N 289 MET CG SD sing N N 290 MET CG HG2 sing N N 291 MET CG HG3 sing N N 292 MET SD CE sing N N 293 MET CE HE1 sing N N 294 MET CE HE2 sing N N 295 MET CE HE3 sing N N 296 MET OXT HXT sing N N 297 PHE N CA sing N N 298 PHE N H sing N N 299 PHE N H2 sing N N 300 PHE CA C sing N N 301 PHE CA CB sing N N 302 PHE CA HA sing N N 303 PHE C O doub N N 304 PHE C OXT sing N N 305 PHE CB CG sing N N 306 PHE CB HB2 sing N N 307 PHE CB HB3 sing N N 308 PHE CG CD1 doub Y N 309 PHE CG CD2 sing Y N 310 PHE CD1 CE1 sing Y N 311 PHE CD1 HD1 sing N N 312 PHE CD2 CE2 doub Y N 313 PHE CD2 HD2 sing N N 314 PHE CE1 CZ doub Y N 315 PHE CE1 HE1 sing N N 316 PHE CE2 CZ sing Y N 317 PHE CE2 HE2 sing N N 318 PHE CZ HZ sing N N 319 PHE OXT HXT sing N N 320 PRO N CA sing N N 321 PRO N CD sing N N 322 PRO N H sing N N 323 PRO CA C sing N N 324 PRO CA CB sing N N 325 PRO CA HA sing N N 326 PRO C O doub N N 327 PRO C OXT sing N N 328 PRO CB CG sing N N 329 PRO CB HB2 sing N N 330 PRO CB HB3 sing N N 331 PRO CG CD sing N N 332 PRO CG HG2 sing N N 333 PRO CG HG3 sing N N 334 PRO CD HD2 sing N N 335 PRO CD HD3 sing N N 336 PRO OXT HXT sing N N 337 SER N CA sing N N 338 SER N H sing N N 339 SER N H2 sing N N 340 SER CA C sing N N 341 SER CA CB sing N N 342 SER CA HA sing N N 343 SER C O doub N N 344 SER C OXT sing N N 345 SER CB OG sing N N 346 SER CB HB2 sing N N 347 SER CB HB3 sing N N 348 SER OG HG sing N N 349 SER OXT HXT sing N N 350 THR N CA sing N N 351 THR N H sing N N 352 THR N H2 sing N N 353 THR CA C sing N N 354 THR CA CB sing N N 355 THR CA HA sing N N 356 THR C O doub N N 357 THR C OXT sing N N 358 THR CB OG1 sing N N 359 THR CB CG2 sing N N 360 THR CB HB sing N N 361 THR OG1 HG1 sing N N 362 THR CG2 HG21 sing N N 363 THR CG2 HG22 sing N N 364 THR CG2 HG23 sing N N 365 THR OXT HXT sing N N 366 TRP N CA sing N N 367 TRP N H sing N N 368 TRP N H2 sing N N 369 TRP CA C sing N N 370 TRP CA CB sing N N 371 TRP CA HA sing N N 372 TRP C O doub N N 373 TRP C OXT sing N N 374 TRP CB CG sing N N 375 TRP CB HB2 sing N N 376 TRP CB HB3 sing N N 377 TRP CG CD1 doub Y N 378 TRP CG CD2 sing Y N 379 TRP CD1 NE1 sing Y N 380 TRP CD1 HD1 sing N N 381 TRP CD2 CE2 doub Y N 382 TRP CD2 CE3 sing Y N 383 TRP NE1 CE2 sing Y N 384 TRP NE1 HE1 sing N N 385 TRP CE2 CZ2 sing Y N 386 TRP CE3 CZ3 doub Y N 387 TRP CE3 HE3 sing N N 388 TRP CZ2 CH2 doub Y N 389 TRP CZ2 HZ2 sing N N 390 TRP CZ3 CH2 sing Y N 391 TRP CZ3 HZ3 sing N N 392 TRP CH2 HH2 sing N N 393 TRP OXT HXT sing N N 394 TYR N CA sing N N 395 TYR N H sing N N 396 TYR N H2 sing N N 397 TYR CA C sing N N 398 TYR CA CB sing N N 399 TYR CA HA sing N N 400 TYR C O doub N N 401 TYR C OXT sing N N 402 TYR CB CG sing N N 403 TYR CB HB2 sing N N 404 TYR CB HB3 sing N N 405 TYR CG CD1 doub Y N 406 TYR CG CD2 sing Y N 407 TYR CD1 CE1 sing Y N 408 TYR CD1 HD1 sing N N 409 TYR CD2 CE2 doub Y N 410 TYR CD2 HD2 sing N N 411 TYR CE1 CZ doub Y N 412 TYR CE1 HE1 sing N N 413 TYR CE2 CZ sing Y N 414 TYR CE2 HE2 sing N N 415 TYR CZ OH sing N N 416 TYR OH HH sing N N 417 TYR OXT HXT sing N N 418 VAL N CA sing N N 419 VAL N H sing N N 420 VAL N H2 sing N N 421 VAL CA C sing N N 422 VAL CA CB sing N N 423 VAL CA HA sing N N 424 VAL C O doub N N 425 VAL C OXT sing N N 426 VAL CB CG1 sing N N 427 VAL CB CG2 sing N N 428 VAL CB HB sing N N 429 VAL CG1 HG11 sing N N 430 VAL CG1 HG12 sing N N 431 VAL CG1 HG13 sing N N 432 VAL CG2 HG21 sing N N 433 VAL CG2 HG22 sing N N 434 VAL CG2 HG23 sing N N 435 VAL OXT HXT sing N N 436 # _atom_sites.entry_id 3GD8 _atom_sites.fract_transf_matrix[1][1] 0.012187 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012187 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013097 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_