HEADER TRANSFERASE 24-FEB-09 3GDH TITLE METHYLTRANSFERASE DOMAIN OF HUMAN TRIMETHYLGUANOSINE SYNTHASE 1 (TGS1) TITLE 2 BOUND TO M7GTP AND ADENOSYL-HOMOCYSTEINE (ACTIVE FORM) COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRIMETHYLGUANOSINE SYNTHASE HOMOLOG; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: UNP RESIDUES 618-853; COMPND 5 SYNONYM: NUCLEAR RECEPTOR COACTIVATOR 6-INTERACTING PROTEIN, PRIP- COMPND 6 INTERACTING PROTEIN WITH METHYLTRANSFERASE MOTIF, PIPMT, PIMT, CLL- COMPND 7 ASSOCIATED ANTIGEN KW-2, HEPATOCELLULAR CARCINOMA-ASSOCIATED ANTIGEN COMPND 8 137; COMPND 9 EC: 2.1.1.-; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TGS1, HCA137, NCOA6IP, PIMT; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX-6P-1 KEYWDS M7G, CAP, DIMETHYLTRANSFERASE, USNRNA, SNORNA, TELOMERASE, CYTOPLASM, KEYWDS 2 METHYLTRANSFERASE, NUCLEUS, PHOSPHOPROTEIN, POLYMORPHISM, KEYWDS 3 TRANSCRIPTION, TRANSCRIPTION REGULATION, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR T.MONECKE,A.DICKMANNS,R.FICNER REVDAT 4 21-FEB-24 3GDH 1 REMARK SEQADV REVDAT 3 01-NOV-17 3GDH 1 REMARK REVDAT 2 28-JUL-09 3GDH 1 JRNL REVDAT 1 23-JUN-09 3GDH 0 JRNL AUTH T.MONECKE,A.DICKMANNS,R.FICNER JRNL TITL STRUCTURAL BASIS FOR M7G-CAP HYPERMETHYLATION OF SMALL JRNL TITL 2 NUCLEAR, SMALL NUCLEOLAR AND TELOMERASE RNA BY THE JRNL TITL 3 DIMETHYLTRANSFERASE TGS1. JRNL REF NUCLEIC ACIDS RES. V. 37 3865 2009 JRNL REFN ISSN 0305-1048 JRNL PMID 19386620 JRNL DOI 10.1093/NAR/GKP249 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.970 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 61430 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3134 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.6590 - 5.5950 0.98 2570 152 0.1660 0.1740 REMARK 3 2 5.5950 - 4.4460 1.00 2653 160 0.1380 0.1520 REMARK 3 3 4.4460 - 3.8850 1.00 2630 145 0.1370 0.1670 REMARK 3 4 3.8850 - 3.5300 1.00 2672 116 0.1500 0.1700 REMARK 3 5 3.5300 - 3.2780 1.00 2658 152 0.1610 0.1890 REMARK 3 6 3.2780 - 3.0850 1.00 2660 150 0.1760 0.2220 REMARK 3 7 3.0850 - 2.9300 1.00 2645 139 0.1760 0.2260 REMARK 3 8 2.9300 - 2.8030 1.00 2658 137 0.1850 0.2150 REMARK 3 9 2.8030 - 2.6950 1.00 2664 137 0.1910 0.2400 REMARK 3 10 2.6950 - 2.6020 1.00 2636 141 0.1930 0.2720 REMARK 3 11 2.6020 - 2.5210 1.00 2657 162 0.2000 0.2180 REMARK 3 12 2.5210 - 2.4490 1.00 2668 128 0.1950 0.2600 REMARK 3 13 2.4490 - 2.3840 1.00 2675 126 0.2030 0.2430 REMARK 3 14 2.3840 - 2.3260 1.00 2658 153 0.2010 0.2450 REMARK 3 15 2.3260 - 2.2730 1.00 2633 133 0.1980 0.2970 REMARK 3 16 2.2730 - 2.2250 1.00 2687 143 0.2020 0.2270 REMARK 3 17 2.2250 - 2.1810 1.00 2611 156 0.1960 0.2410 REMARK 3 18 2.1810 - 2.1390 1.00 2665 125 0.2120 0.2460 REMARK 3 19 2.1390 - 2.1010 1.00 2671 155 0.2170 0.2750 REMARK 3 20 2.1010 - 2.0660 1.00 2664 123 0.2280 0.2740 REMARK 3 21 2.0660 - 2.0320 1.00 2698 139 0.2350 0.2820 REMARK 3 22 2.0320 - 2.0000 1.00 2563 162 0.2380 0.2850 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.34 REMARK 3 B_SOL : 46.39 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.42 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.08900 REMARK 3 B22 (A**2) : -1.08900 REMARK 3 B33 (A**2) : 2.17800 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 5302 REMARK 3 ANGLE : 0.914 7228 REMARK 3 CHIRALITY : 0.060 766 REMARK 3 PLANARITY : 0.004 912 REMARK 3 DIHEDRAL : 17.394 2042 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3GDH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-MAR-09. REMARK 100 THE DEPOSITION ID IS D_1000051723. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-FEB-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 61489 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 2.400 REMARK 200 R MERGE (I) : 0.05400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.4640 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.40 REMARK 200 R MERGE FOR SHELL (I) : 0.35900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000, PH 6, VAPOR DIFFUSION, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 78.12400 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 45.10491 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 33.43633 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 78.12400 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 45.10491 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 33.43633 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 78.12400 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 45.10491 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 33.43633 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 90.20982 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 66.87267 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 90.20982 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 66.87267 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 90.20982 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 66.87267 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 613 REMARK 465 PRO A 614 REMARK 465 LEU A 615 REMARK 465 GLY A 616 REMARK 465 SER A 617 REMARK 465 GLU A 618 REMARK 465 VAL A 619 REMARK 465 LYS A 620 REMARK 465 LYS A 621 REMARK 465 LYS A 622 REMARK 465 LYS A 623 REMARK 465 ASN A 624 REMARK 465 LYS A 625 REMARK 465 LYS A 626 REMARK 465 LYS A 627 REMARK 465 ASN A 628 REMARK 465 LYS A 629 REMARK 465 LYS A 630 REMARK 465 VAL A 631 REMARK 465 ASN A 632 REMARK 465 GLY A 633 REMARK 465 LEU A 845 REMARK 465 ILE A 846 REMARK 465 ARG A 847 REMARK 465 ARG A 848 REMARK 465 PRO A 849 REMARK 465 ALA A 850 REMARK 465 SER A 851 REMARK 465 GLU A 852 REMARK 465 THR A 853 REMARK 465 GLY B 613 REMARK 465 PRO B 614 REMARK 465 LEU B 615 REMARK 465 GLY B 616 REMARK 465 SER B 617 REMARK 465 GLU B 618 REMARK 465 VAL B 619 REMARK 465 LYS B 620 REMARK 465 LYS B 621 REMARK 465 LYS B 622 REMARK 465 LYS B 623 REMARK 465 ASN B 624 REMARK 465 LYS B 625 REMARK 465 LYS B 626 REMARK 465 LYS B 627 REMARK 465 ASN B 628 REMARK 465 LYS B 629 REMARK 465 LYS B 630 REMARK 465 VAL B 631 REMARK 465 ASN B 632 REMARK 465 GLY B 633 REMARK 465 LEU B 634 REMARK 465 PRO B 635 REMARK 465 PRO B 636 REMARK 465 PHE B 689 REMARK 465 LYS B 690 REMARK 465 ARG B 848 REMARK 465 PRO B 849 REMARK 465 ALA B 850 REMARK 465 SER B 851 REMARK 465 GLU B 852 REMARK 465 THR B 853 REMARK 465 GLY C 613 REMARK 465 PRO C 614 REMARK 465 LEU C 615 REMARK 465 GLY C 616 REMARK 465 SER C 617 REMARK 465 GLU C 618 REMARK 465 VAL C 619 REMARK 465 LYS C 620 REMARK 465 LYS C 621 REMARK 465 LYS C 622 REMARK 465 LYS C 623 REMARK 465 ASN C 624 REMARK 465 LYS C 625 REMARK 465 LYS C 626 REMARK 465 LYS C 627 REMARK 465 ASN C 628 REMARK 465 LYS C 629 REMARK 465 LYS C 630 REMARK 465 VAL C 631 REMARK 465 ASN C 632 REMARK 465 GLY C 633 REMARK 465 LEU C 634 REMARK 465 PRO C 635 REMARK 465 PRO C 636 REMARK 465 GLU C 637 REMARK 465 ILE C 638 REMARK 465 ALA C 639 REMARK 465 ALA C 640 REMARK 465 ARG C 848 REMARK 465 PRO C 849 REMARK 465 ALA C 850 REMARK 465 SER C 851 REMARK 465 GLU C 852 REMARK 465 THR C 853 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ARG B 714 NE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN B 687 45.80 -82.13 REMARK 500 PRO B 769 -7.17 -53.60 REMARK 500 ASP C 810 105.86 -57.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MGP A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAH A 854 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGR A 855 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGR A 4 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MGP B 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAH B 854 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGR B 855 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MGP C 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAH C 854 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGR C 855 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGO C 856 DBREF 3GDH A 618 853 UNP Q96RS0 TGS1_HUMAN 618 853 DBREF 3GDH B 618 853 UNP Q96RS0 TGS1_HUMAN 618 853 DBREF 3GDH C 618 853 UNP Q96RS0 TGS1_HUMAN 618 853 SEQADV 3GDH GLY A 613 UNP Q96RS0 EXPRESSION TAG SEQADV 3GDH PRO A 614 UNP Q96RS0 EXPRESSION TAG SEQADV 3GDH LEU A 615 UNP Q96RS0 EXPRESSION TAG SEQADV 3GDH GLY A 616 UNP Q96RS0 EXPRESSION TAG SEQADV 3GDH SER A 617 UNP Q96RS0 EXPRESSION TAG SEQADV 3GDH GLY B 613 UNP Q96RS0 EXPRESSION TAG SEQADV 3GDH PRO B 614 UNP Q96RS0 EXPRESSION TAG SEQADV 3GDH LEU B 615 UNP Q96RS0 EXPRESSION TAG SEQADV 3GDH GLY B 616 UNP Q96RS0 EXPRESSION TAG SEQADV 3GDH SER B 617 UNP Q96RS0 EXPRESSION TAG SEQADV 3GDH GLY C 613 UNP Q96RS0 EXPRESSION TAG SEQADV 3GDH PRO C 614 UNP Q96RS0 EXPRESSION TAG SEQADV 3GDH LEU C 615 UNP Q96RS0 EXPRESSION TAG SEQADV 3GDH GLY C 616 UNP Q96RS0 EXPRESSION TAG SEQADV 3GDH SER C 617 UNP Q96RS0 EXPRESSION TAG SEQRES 1 A 241 GLY PRO LEU GLY SER GLU VAL LYS LYS LYS LYS ASN LYS SEQRES 2 A 241 LYS LYS ASN LYS LYS VAL ASN GLY LEU PRO PRO GLU ILE SEQRES 3 A 241 ALA ALA VAL PRO GLU LEU ALA LYS TYR TRP ALA GLN ARG SEQRES 4 A 241 TYR ARG LEU PHE SER ARG PHE ASP ASP GLY ILE LYS LEU SEQRES 5 A 241 ASP ARG GLU GLY TRP PHE SER VAL THR PRO GLU LYS ILE SEQRES 6 A 241 ALA GLU HIS ILE ALA GLY ARG VAL SER GLN SER PHE LYS SEQRES 7 A 241 CYS ASP VAL VAL VAL ASP ALA PHE CYS GLY VAL GLY GLY SEQRES 8 A 241 ASN THR ILE GLN PHE ALA LEU THR GLY MET ARG VAL ILE SEQRES 9 A 241 ALA ILE ASP ILE ASP PRO VAL LYS ILE ALA LEU ALA ARG SEQRES 10 A 241 ASN ASN ALA GLU VAL TYR GLY ILE ALA ASP LYS ILE GLU SEQRES 11 A 241 PHE ILE CYS GLY ASP PHE LEU LEU LEU ALA SER PHE LEU SEQRES 12 A 241 LYS ALA ASP VAL VAL PHE LEU SER PRO PRO TRP GLY GLY SEQRES 13 A 241 PRO ASP TYR ALA THR ALA GLU THR PHE ASP ILE ARG THR SEQRES 14 A 241 MET MET SER PRO ASP GLY PHE GLU ILE PHE ARG LEU SER SEQRES 15 A 241 LYS LYS ILE THR ASN ASN ILE VAL TYR PHE LEU PRO ARG SEQRES 16 A 241 ASN ALA ASP ILE ASP GLN VAL ALA SER LEU ALA GLY PRO SEQRES 17 A 241 GLY GLY GLN VAL GLU ILE GLU GLN ASN PHE LEU ASN ASN SEQRES 18 A 241 LYS LEU LYS THR ILE THR ALA TYR PHE GLY ASP LEU ILE SEQRES 19 A 241 ARG ARG PRO ALA SER GLU THR SEQRES 1 B 241 GLY PRO LEU GLY SER GLU VAL LYS LYS LYS LYS ASN LYS SEQRES 2 B 241 LYS LYS ASN LYS LYS VAL ASN GLY LEU PRO PRO GLU ILE SEQRES 3 B 241 ALA ALA VAL PRO GLU LEU ALA LYS TYR TRP ALA GLN ARG SEQRES 4 B 241 TYR ARG LEU PHE SER ARG PHE ASP ASP GLY ILE LYS LEU SEQRES 5 B 241 ASP ARG GLU GLY TRP PHE SER VAL THR PRO GLU LYS ILE SEQRES 6 B 241 ALA GLU HIS ILE ALA GLY ARG VAL SER GLN SER PHE LYS SEQRES 7 B 241 CYS ASP VAL VAL VAL ASP ALA PHE CYS GLY VAL GLY GLY SEQRES 8 B 241 ASN THR ILE GLN PHE ALA LEU THR GLY MET ARG VAL ILE SEQRES 9 B 241 ALA ILE ASP ILE ASP PRO VAL LYS ILE ALA LEU ALA ARG SEQRES 10 B 241 ASN ASN ALA GLU VAL TYR GLY ILE ALA ASP LYS ILE GLU SEQRES 11 B 241 PHE ILE CYS GLY ASP PHE LEU LEU LEU ALA SER PHE LEU SEQRES 12 B 241 LYS ALA ASP VAL VAL PHE LEU SER PRO PRO TRP GLY GLY SEQRES 13 B 241 PRO ASP TYR ALA THR ALA GLU THR PHE ASP ILE ARG THR SEQRES 14 B 241 MET MET SER PRO ASP GLY PHE GLU ILE PHE ARG LEU SER SEQRES 15 B 241 LYS LYS ILE THR ASN ASN ILE VAL TYR PHE LEU PRO ARG SEQRES 16 B 241 ASN ALA ASP ILE ASP GLN VAL ALA SER LEU ALA GLY PRO SEQRES 17 B 241 GLY GLY GLN VAL GLU ILE GLU GLN ASN PHE LEU ASN ASN SEQRES 18 B 241 LYS LEU LYS THR ILE THR ALA TYR PHE GLY ASP LEU ILE SEQRES 19 B 241 ARG ARG PRO ALA SER GLU THR SEQRES 1 C 241 GLY PRO LEU GLY SER GLU VAL LYS LYS LYS LYS ASN LYS SEQRES 2 C 241 LYS LYS ASN LYS LYS VAL ASN GLY LEU PRO PRO GLU ILE SEQRES 3 C 241 ALA ALA VAL PRO GLU LEU ALA LYS TYR TRP ALA GLN ARG SEQRES 4 C 241 TYR ARG LEU PHE SER ARG PHE ASP ASP GLY ILE LYS LEU SEQRES 5 C 241 ASP ARG GLU GLY TRP PHE SER VAL THR PRO GLU LYS ILE SEQRES 6 C 241 ALA GLU HIS ILE ALA GLY ARG VAL SER GLN SER PHE LYS SEQRES 7 C 241 CYS ASP VAL VAL VAL ASP ALA PHE CYS GLY VAL GLY GLY SEQRES 8 C 241 ASN THR ILE GLN PHE ALA LEU THR GLY MET ARG VAL ILE SEQRES 9 C 241 ALA ILE ASP ILE ASP PRO VAL LYS ILE ALA LEU ALA ARG SEQRES 10 C 241 ASN ASN ALA GLU VAL TYR GLY ILE ALA ASP LYS ILE GLU SEQRES 11 C 241 PHE ILE CYS GLY ASP PHE LEU LEU LEU ALA SER PHE LEU SEQRES 12 C 241 LYS ALA ASP VAL VAL PHE LEU SER PRO PRO TRP GLY GLY SEQRES 13 C 241 PRO ASP TYR ALA THR ALA GLU THR PHE ASP ILE ARG THR SEQRES 14 C 241 MET MET SER PRO ASP GLY PHE GLU ILE PHE ARG LEU SER SEQRES 15 C 241 LYS LYS ILE THR ASN ASN ILE VAL TYR PHE LEU PRO ARG SEQRES 16 C 241 ASN ALA ASP ILE ASP GLN VAL ALA SER LEU ALA GLY PRO SEQRES 17 C 241 GLY GLY GLN VAL GLU ILE GLU GLN ASN PHE LEU ASN ASN SEQRES 18 C 241 LYS LEU LYS THR ILE THR ALA TYR PHE GLY ASP LEU ILE SEQRES 19 C 241 ARG ARG PRO ALA SER GLU THR HET MGP A 1 33 HET SAH A 854 26 HET PGR A 855 5 HET PGR A 4 5 HET MGP B 2 33 HET SAH B 854 26 HET PGR B 855 5 HET MGP C 3 33 HET SAH C 854 26 HET PGR C 855 5 HET PGO C 856 5 HETNAM MGP 7-METHYL-GUANOSINE-5'-TRIPHOSPHATE HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE HETNAM PGR R-1,2-PROPANEDIOL HETNAM PGO S-1,2-PROPANEDIOL FORMUL 4 MGP 3(C11 H19 N5 O14 P3 1+) FORMUL 5 SAH 3(C14 H20 N6 O5 S) FORMUL 6 PGR 4(C3 H8 O2) FORMUL 14 PGO C3 H8 O2 FORMUL 15 HOH *409(H2 O) HELIX 1 1 PRO A 635 VAL A 641 1 7 HELIX 2 2 LEU A 644 GLN A 650 1 7 HELIX 3 3 GLN A 650 PHE A 655 1 6 HELIX 4 4 ARG A 657 GLY A 661 5 5 HELIX 5 5 ASP A 665 VAL A 672 1 8 HELIX 6 6 PRO A 674 PHE A 689 1 16 HELIX 7 7 GLY A 702 THR A 711 1 10 HELIX 8 8 ASP A 721 TYR A 735 1 15 HELIX 9 9 ILE A 737 ASP A 739 5 3 HELIX 10 10 ASP A 747 ALA A 752 1 6 HELIX 11 11 SER A 753 LEU A 755 5 3 HELIX 12 12 GLY A 768 ALA A 774 5 7 HELIX 13 13 ASP A 786 THR A 798 1 13 HELIX 14 14 ASP A 810 LEU A 817 1 8 HELIX 15 15 VAL B 641 GLU B 643 5 3 HELIX 16 16 LEU B 644 GLN B 650 1 7 HELIX 17 17 GLN B 650 PHE B 655 1 6 HELIX 18 18 ARG B 657 GLY B 661 5 5 HELIX 19 19 ASP B 665 VAL B 672 1 8 HELIX 20 20 PRO B 674 GLN B 687 1 14 HELIX 21 21 GLY B 702 THR B 711 1 10 HELIX 22 22 ASP B 721 TYR B 735 1 15 HELIX 23 23 ILE B 737 ASP B 739 5 3 HELIX 24 24 ASP B 747 ALA B 752 1 6 HELIX 25 25 SER B 753 LEU B 755 5 3 HELIX 26 26 GLY B 767 ALA B 774 5 8 HELIX 27 27 ASP B 786 THR B 798 1 13 HELIX 28 28 ASP B 810 LEU B 817 1 8 HELIX 29 29 GLY B 843 ILE B 846 5 4 HELIX 30 30 VAL C 641 GLU C 643 5 3 HELIX 31 31 LEU C 644 GLN C 650 1 7 HELIX 32 32 GLN C 650 PHE C 655 1 6 HELIX 33 33 ARG C 657 GLY C 661 5 5 HELIX 34 34 ASP C 665 VAL C 672 1 8 HELIX 35 35 PRO C 674 GLN C 687 1 14 HELIX 36 36 GLY C 702 THR C 711 1 10 HELIX 37 37 ASP C 721 TYR C 735 1 15 HELIX 38 38 ILE C 737 ASP C 739 5 3 HELIX 39 39 ASP C 747 ALA C 752 1 6 HELIX 40 40 SER C 753 LEU C 755 5 3 HELIX 41 41 GLY C 768 ALA C 774 5 7 HELIX 42 42 ASP C 786 THR C 798 1 13 HELIX 43 43 ASP C 810 LEU C 817 1 8 HELIX 44 44 GLY C 843 ILE C 846 5 4 SHEET 1 A21 VAL A 824 LEU A 831 0 SHEET 2 A21 LYS A 834 PHE A 842 -1 O TYR A 841 N GLU A 825 SHEET 3 A21 ILE A 801 PRO A 806 -1 N ILE A 801 O PHE A 842 SHEET 4 A21 VAL A 759 LEU A 762 1 N LEU A 762 O VAL A 802 SHEET 5 A21 VAL A 693 ASP A 696 1 N VAL A 695 O PHE A 761 SHEET 6 A21 ARG A 714 ASP A 719 1 O ILE A 718 N ASP A 696 SHEET 7 A21 ILE A 741 CYS A 745 1 O ILE A 744 N ALA A 717 SHEET 8 A21 GLN B 823 LEU B 831 1 O ILE B 826 N CYS A 745 SHEET 9 A21 LYS B 834 TYR B 841 -1 O THR B 837 N ASN B 829 SHEET 10 A21 ILE B 801 PRO B 806 -1 N TYR B 803 O ALA B 840 SHEET 11 A21 VAL B 759 LEU B 762 1 N LEU B 762 O PHE B 804 SHEET 12 A21 VAL B 693 ASP B 696 1 N VAL B 695 O PHE B 761 SHEET 13 A21 ARG B 714 ASP B 719 1 O ILE B 718 N ASP B 696 SHEET 14 A21 ILE B 741 CYS B 745 1 O ILE B 744 N ALA B 717 SHEET 15 A21 GLN C 823 LEU C 831 1 O VAL C 824 N CYS B 745 SHEET 16 A21 LYS C 834 TYR C 841 -1 O THR C 837 N ASN C 829 SHEET 17 A21 ILE C 801 PRO C 806 -1 N TYR C 803 O ALA C 840 SHEET 18 A21 VAL C 759 LEU C 762 1 N LEU C 762 O PHE C 804 SHEET 19 A21 VAL C 693 ASP C 696 1 N VAL C 695 O PHE C 761 SHEET 20 A21 ARG C 714 ASP C 719 1 O ILE C 716 N VAL C 694 SHEET 21 A21 ILE C 741 CYS C 745 1 O GLU C 742 N VAL C 715 CISPEP 1 SER A 784 PRO A 785 0 1.70 CISPEP 2 SER B 784 PRO B 785 0 3.06 CISPEP 3 SER C 784 PRO C 785 0 2.98 SITE 1 AC1 23 HOH A 2 HOH A 10 HOH A 214 HOH A 223 SITE 2 AC1 23 HOH A 262 HOH A 312 LYS A 646 TYR A 647 SITE 3 AC1 23 PHE A 670 SER A 671 VAL A 672 PRO A 674 SITE 4 AC1 23 SER A 763 PRO A 764 TRP A 766 GLY A 768 SITE 5 AC1 23 TYR A 771 ARG A 807 LYS A 836 THR A 837 SITE 6 AC1 23 PGR A 855 HOH A 856 HOH A 857 SITE 1 AC2 25 HOH A 5 HOH A 26 HOH A 169 HOH A 170 SITE 2 AC2 25 HOH A 241 GLU A 667 SER A 671 VAL A 672 SITE 3 AC2 25 THR A 673 ALA A 697 PHE A 698 CYS A 699 SITE 4 AC2 25 GLY A 700 VAL A 701 GLY A 702 GLY A 703 SITE 5 AC2 25 ASN A 704 ASP A 719 ILE A 720 LYS A 724 SITE 6 AC2 25 GLY A 746 ASP A 747 PHE A 748 SER A 763 SITE 7 AC2 25 PRO A 765 SITE 1 AC3 4 MGP A 1 TYR A 647 GLN A 650 LYS A 836 SITE 1 AC4 5 GLU A 733 GLY A 736 ILE A 737 ALA A 738 SITE 2 AC4 5 ASP A 739 SITE 1 AC5 17 HOH B 67 HOH B 96 LYS B 646 TYR B 647 SITE 2 AC5 17 PHE B 670 SER B 671 VAL B 672 PRO B 674 SITE 3 AC5 17 SER B 763 PRO B 764 TRP B 766 GLY B 768 SITE 4 AC5 17 TYR B 771 ARG B 807 LYS B 836 THR B 837 SITE 5 AC5 17 PGR B 855 SITE 1 AC6 22 HOH B 65 HOH B 66 HOH B 99 HOH B 284 SITE 2 AC6 22 GLU B 667 SER B 671 THR B 673 ALA B 697 SITE 3 AC6 22 PHE B 698 CYS B 699 GLY B 700 VAL B 701 SITE 4 AC6 22 GLY B 702 GLY B 703 ASN B 704 ASP B 719 SITE 5 AC6 22 ILE B 720 LYS B 724 ASP B 747 PHE B 748 SITE 6 AC6 22 SER B 763 PRO B 765 SITE 1 AC7 5 MGP B 2 LYS B 646 TYR B 647 GLN B 650 SITE 2 AC7 5 LYS B 836 SITE 1 AC8 19 HOH C 115 HOH C 209 LYS C 646 TYR C 647 SITE 2 AC8 19 PHE C 670 SER C 671 VAL C 672 THR C 673 SITE 3 AC8 19 PRO C 674 SER C 763 PRO C 764 TRP C 766 SITE 4 AC8 19 GLY C 768 TYR C 771 ARG C 807 LYS C 834 SITE 5 AC8 19 LYS C 836 THR C 837 PGR C 855 SITE 1 AC9 23 HOH C 117 HOH C 124 GLU C 667 SER C 671 SITE 2 AC9 23 VAL C 672 THR C 673 ALA C 697 PHE C 698 SITE 3 AC9 23 CYS C 699 GLY C 700 VAL C 701 GLY C 702 SITE 4 AC9 23 GLY C 703 ASN C 704 ASP C 719 ILE C 720 SITE 5 AC9 23 LYS C 724 GLY C 746 ASP C 747 PHE C 748 SITE 6 AC9 23 LEU C 749 SER C 763 PRO C 765 SITE 1 BC1 4 MGP C 3 TYR C 647 GLN C 650 LYS C 836 SITE 1 BC2 7 HOH C 254 ALA C 732 GLU C 733 GLY C 736 SITE 2 BC2 7 ILE C 737 ALA C 738 ASP C 739 CRYST1 156.248 156.248 100.309 90.00 90.00 120.00 H 3 27 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006400 0.003695 0.000000 0.00000 SCALE2 0.000000 0.007390 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009969 0.00000