HEADER LYASE 24-FEB-09 3GDN TITLE ALMOND HYDROXYNITRILE LYASE IN COMPLEX WITH BENZALDEHYDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: R-OXYNITRILE LYASE ISOENZYME 1; COMPND 3 CHAIN: A, B; COMPND 4 EC: 4.1.2.10 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PRUNUS DULCIS; SOURCE 3 ORGANISM_COMMON: SWEET ALMOND; SOURCE 4 ORGANISM_TAXID: 3755 KEYWDS HYDROXYNITRILE LYASE, FLAVIN, GMC OXIDOREDUCTASE, ALMOND, KEYWDS 2 CYANOGENESIS, FLAVOPROTEIN, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR I.DREVENY,K.GRUBER,C.KRATKY REVDAT 5 06-SEP-23 3GDN 1 HETSYN REVDAT 4 29-JUL-20 3GDN 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 13-JUL-11 3GDN 1 VERSN REVDAT 2 28-APR-09 3GDN 1 JRNL REVDAT 1 24-MAR-09 3GDN 0 JRNL AUTH I.DREVENY,A.S.ANDRYUSHKOVA,A.GLIEDER,K.GRUBER,C.KRATKY JRNL TITL SUBSTRATE BINDING IN THE FAD-DEPENDENT HYDROXYNITRILE LYASE JRNL TITL 2 FROM ALMOND PROVIDES INSIGHT INTO THE MECHANISM OF JRNL TITL 3 CYANOHYDRIN FORMATION AND EXPLAINS THE ABSENCE OF JRNL TITL 4 DEHYDROGENATION ACTIVITY. JRNL REF BIOCHEMISTRY V. 48 3370 2009 JRNL REFN ISSN 0006-2960 JRNL PMID 19256550 JRNL DOI 10.1021/BI802162S REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH I.DREVENY,K.GRUBER,A.GLIEDER,A.THOMPSON,C.KRATKY REMARK 1 TITL THE HYDROXYNITRILE LYASE FROM ALMOND: A LYASE THAT LOOKS REMARK 1 TITL 2 LIKE AN OXIDOREDUCTASE. REMARK 1 REF STRUCTURE V. 9 803 2001 REMARK 1 REFN ISSN 0969-2126 REMARK 1 PMID 11566130 REMARK 2 REMARK 2 RESOLUTION. 1.67 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.2 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.67 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.97 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 106984.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 86.3 REMARK 3 NUMBER OF REFLECTIONS : 106015 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.197 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 10601 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.002 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.67 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.77 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 85.40 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 15724 REMARK 3 BIN R VALUE (WORKING SET) : 0.2240 REMARK 3 BIN FREE R VALUE : 0.2610 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 9.90 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 1723 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.006 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7988 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 377 REMARK 3 SOLVENT ATOMS : 1269 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.55 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.25000 REMARK 3 B22 (A**2) : 4.72000 REMARK 3 B33 (A**2) : -2.47000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.21000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.17 REMARK 3 ESD FROM SIGMAA (A) : 0.09 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.19 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.14 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.00 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.830 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 0.990 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.450 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.710 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.470 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.35 REMARK 3 BSOL : 36.32 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : CARBOHYDRATE.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : MAN.PAR REMARK 3 PARAMETER FILE 5 : BENZAL1FAD.PAR REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : MAN.TOP REMARK 3 TOPOLOGY FILE 3 : BENZAL1FAD.TOP REMARK 3 TOPOLOGY FILE 4 : WATER.TOP REMARK 3 TOPOLOGY FILE 5 : CARBOHYDRATE.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT MODEL USED REMARK 4 REMARK 4 3GDN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-MAR-09. REMARK 100 THE DEPOSITION ID IS D_1000051729. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUN-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : BW7B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91010 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 107944 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.670 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 87.7 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04800 REMARK 200 FOR THE DATA SET : 14.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.67 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.77 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.16000 REMARK 200 FOR SHELL : 7.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1JU2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% W/V PEG-4000, 16% V/V ISOPROPANOL, REMARK 280 PH 7.0, VAPOR DIFFUSION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 46.89500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER A 345 CB SER A 345 OG -0.171 REMARK 500 ASN A 384 CB ASN A 384 CG -0.189 REMARK 500 ASN B 384 CB ASN B 384 CG -0.147 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 4 130.75 -39.50 REMARK 500 ALA A 124 47.86 -105.74 REMARK 500 LYS A 250 -5.42 71.73 REMARK 500 SER A 347 76.78 -102.09 REMARK 500 CYS A 464 60.83 -157.97 REMARK 500 LYS A 468 -53.74 -120.26 REMARK 500 ASP A 486 -163.27 -179.85 REMARK 500 ALA A 495 -176.18 -170.66 REMARK 500 ALA B 124 41.69 -105.73 REMARK 500 LYS B 250 -5.67 71.46 REMARK 500 CYS B 464 62.55 -156.57 REMARK 500 ASP B 486 -163.26 -179.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1JU2 RELATED DB: PDB REMARK 900 UNBOUND ENZYME, TRICLINIC CRYSTAL FORM REMARK 900 RELATED ID: 3GDP RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 AUTHORS STATE THAT SINCE THE PROTEIN WAS PURIFIED FROM A NATURAL REMARK 999 SOURCE, THIS DIFFERENCE BETWEEN THE DEPOSITED SEQUENCE AND UNIPROT REMARK 999 DATABASE COULD INDICATE NATURAL VARIATION. DBREF 3GDN A 1 521 UNP Q945K2 Q945K2_PRUDU 28 548 DBREF 3GDN B 1 521 UNP Q945K2 Q945K2_PRUDU 28 548 SEQADV 3GDN SER A 346 UNP Q945K2 ALA 373 SEE REMARK 999 SEQADV 3GDN SER B 346 UNP Q945K2 ALA 373 SEE REMARK 999 SEQRES 1 A 521 LEU ALA THR THR SER ASP HIS ASP PHE SER TYR LEU SER SEQRES 2 A 521 PHE ALA TYR ASP ALA THR ASP LEU GLU LEU GLU GLY SER SEQRES 3 A 521 TYR ASP TYR VAL ILE VAL GLY GLY GLY THR SER GLY CYS SEQRES 4 A 521 PRO LEU ALA ALA THR LEU SER GLU LYS TYR LYS VAL LEU SEQRES 5 A 521 VAL LEU GLU ARG GLY SER LEU PRO THR ALA TYR PRO ASN SEQRES 6 A 521 VAL LEU THR ALA ASP GLY PHE VAL TYR ASN LEU GLN GLN SEQRES 7 A 521 GLU ASP ASP GLY LYS THR PRO VAL GLU ARG PHE VAL SER SEQRES 8 A 521 GLU ASP GLY ILE ASP ASN VAL ARG GLY ARG VAL LEU GLY SEQRES 9 A 521 GLY THR SER ILE ILE ASN ALA GLY VAL TYR ALA ARG ALA SEQRES 10 A 521 ASN THR SER ILE TYR SER ALA SER GLY VAL ASP TRP ASP SEQRES 11 A 521 MET ASP LEU VAL ASN GLN THR TYR GLU TRP VAL GLU ASP SEQRES 12 A 521 THR ILE VAL TYR LYS PRO ASN SER GLN SER TRP GLN SER SEQRES 13 A 521 VAL THR LYS THR ALA PHE LEU GLU ALA GLY VAL HIS PRO SEQRES 14 A 521 ASN HIS GLY PHE SER LEU ASP HIS GLU GLU GLY THR ARG SEQRES 15 A 521 ILE THR GLY SER THR PHE ASP ASN LYS GLY THR ARG HIS SEQRES 16 A 521 ALA ALA ASP GLU LEU LEU ASN LYS GLY ASN SER ASN ASN SEQRES 17 A 521 LEU ARG VAL GLY VAL HIS ALA SER VAL GLU LYS ILE ILE SEQRES 18 A 521 PHE SER ASN ALA PRO GLY LEU THR ALA THR GLY VAL ILE SEQRES 19 A 521 TYR ARG ASP SER ASN GLY THR PRO HIS GLN ALA PHE VAL SEQRES 20 A 521 ARG SER LYS GLY GLU VAL ILE VAL SER ALA GLY THR ILE SEQRES 21 A 521 GLY THR PRO GLN LEU LEU LEU LEU SER GLY VAL GLY PRO SEQRES 22 A 521 GLU SER TYR LEU SER SER LEU ASN ILE PRO VAL VAL LEU SEQRES 23 A 521 SER HIS PRO TYR VAL GLY GLN PHE LEU HIS ASP ASN PRO SEQRES 24 A 521 ARG ASN PHE ILE ASN ILE LEU PRO PRO ASN PRO ILE GLU SEQRES 25 A 521 PRO THR ILE VAL THR VAL LEU GLY ILE SER ASN ASP PHE SEQRES 26 A 521 TYR GLN CYS SER PHE SER SER LEU PRO PHE THR THR PRO SEQRES 27 A 521 PRO PHE GLY PHE PHE PRO SER SER SER TYR PRO LEU PRO SEQRES 28 A 521 ASN SER THR PHE ALA HIS PHE ALA SER LYS VAL ALA GLY SEQRES 29 A 521 PRO LEU SER TYR GLY SER LEU THR LEU LYS SER SER SER SEQRES 30 A 521 ASN VAL ARG VAL SER PRO ASN VAL LYS PHE ASN TYR TYR SEQRES 31 A 521 SER ASN LEU THR ASP LEU SER HIS CYS VAL SER GLY MET SEQRES 32 A 521 LYS LYS ILE GLY GLU LEU LEU SER THR ASP ALA LEU LYS SEQRES 33 A 521 PRO TYR LYS VAL GLU ASP LEU PRO GLY VAL GLU GLY PHE SEQRES 34 A 521 ASN ILE LEU GLY ILE PRO LEU PRO LYS ASP GLN THR ASP SEQRES 35 A 521 ASP ALA ALA PHE GLU THR PHE CYS ARG GLU SER VAL ALA SEQRES 36 A 521 SER TYR TRP HIS TYR HIS GLY GLY CYS LEU VAL GLY LYS SEQRES 37 A 521 VAL LEU ASP GLY ASP PHE ARG VAL THR GLY ILE ASN ALA SEQRES 38 A 521 LEU ARG VAL VAL ASP GLY SER THR PHE PRO TYR THR PRO SEQRES 39 A 521 ALA SER HIS PRO GLN GLY PHE TYR LEU MET LEU GLY ARG SEQRES 40 A 521 TYR VAL GLY ILE LYS ILE LEU GLN GLU ARG SER ALA SER SEQRES 41 A 521 ASP SEQRES 1 B 521 LEU ALA THR THR SER ASP HIS ASP PHE SER TYR LEU SER SEQRES 2 B 521 PHE ALA TYR ASP ALA THR ASP LEU GLU LEU GLU GLY SER SEQRES 3 B 521 TYR ASP TYR VAL ILE VAL GLY GLY GLY THR SER GLY CYS SEQRES 4 B 521 PRO LEU ALA ALA THR LEU SER GLU LYS TYR LYS VAL LEU SEQRES 5 B 521 VAL LEU GLU ARG GLY SER LEU PRO THR ALA TYR PRO ASN SEQRES 6 B 521 VAL LEU THR ALA ASP GLY PHE VAL TYR ASN LEU GLN GLN SEQRES 7 B 521 GLU ASP ASP GLY LYS THR PRO VAL GLU ARG PHE VAL SER SEQRES 8 B 521 GLU ASP GLY ILE ASP ASN VAL ARG GLY ARG VAL LEU GLY SEQRES 9 B 521 GLY THR SER ILE ILE ASN ALA GLY VAL TYR ALA ARG ALA SEQRES 10 B 521 ASN THR SER ILE TYR SER ALA SER GLY VAL ASP TRP ASP SEQRES 11 B 521 MET ASP LEU VAL ASN GLN THR TYR GLU TRP VAL GLU ASP SEQRES 12 B 521 THR ILE VAL TYR LYS PRO ASN SER GLN SER TRP GLN SER SEQRES 13 B 521 VAL THR LYS THR ALA PHE LEU GLU ALA GLY VAL HIS PRO SEQRES 14 B 521 ASN HIS GLY PHE SER LEU ASP HIS GLU GLU GLY THR ARG SEQRES 15 B 521 ILE THR GLY SER THR PHE ASP ASN LYS GLY THR ARG HIS SEQRES 16 B 521 ALA ALA ASP GLU LEU LEU ASN LYS GLY ASN SER ASN ASN SEQRES 17 B 521 LEU ARG VAL GLY VAL HIS ALA SER VAL GLU LYS ILE ILE SEQRES 18 B 521 PHE SER ASN ALA PRO GLY LEU THR ALA THR GLY VAL ILE SEQRES 19 B 521 TYR ARG ASP SER ASN GLY THR PRO HIS GLN ALA PHE VAL SEQRES 20 B 521 ARG SER LYS GLY GLU VAL ILE VAL SER ALA GLY THR ILE SEQRES 21 B 521 GLY THR PRO GLN LEU LEU LEU LEU SER GLY VAL GLY PRO SEQRES 22 B 521 GLU SER TYR LEU SER SER LEU ASN ILE PRO VAL VAL LEU SEQRES 23 B 521 SER HIS PRO TYR VAL GLY GLN PHE LEU HIS ASP ASN PRO SEQRES 24 B 521 ARG ASN PHE ILE ASN ILE LEU PRO PRO ASN PRO ILE GLU SEQRES 25 B 521 PRO THR ILE VAL THR VAL LEU GLY ILE SER ASN ASP PHE SEQRES 26 B 521 TYR GLN CYS SER PHE SER SER LEU PRO PHE THR THR PRO SEQRES 27 B 521 PRO PHE GLY PHE PHE PRO SER SER SER TYR PRO LEU PRO SEQRES 28 B 521 ASN SER THR PHE ALA HIS PHE ALA SER LYS VAL ALA GLY SEQRES 29 B 521 PRO LEU SER TYR GLY SER LEU THR LEU LYS SER SER SER SEQRES 30 B 521 ASN VAL ARG VAL SER PRO ASN VAL LYS PHE ASN TYR TYR SEQRES 31 B 521 SER ASN LEU THR ASP LEU SER HIS CYS VAL SER GLY MET SEQRES 32 B 521 LYS LYS ILE GLY GLU LEU LEU SER THR ASP ALA LEU LYS SEQRES 33 B 521 PRO TYR LYS VAL GLU ASP LEU PRO GLY VAL GLU GLY PHE SEQRES 34 B 521 ASN ILE LEU GLY ILE PRO LEU PRO LYS ASP GLN THR ASP SEQRES 35 B 521 ASP ALA ALA PHE GLU THR PHE CYS ARG GLU SER VAL ALA SEQRES 36 B 521 SER TYR TRP HIS TYR HIS GLY GLY CYS LEU VAL GLY LYS SEQRES 37 B 521 VAL LEU ASP GLY ASP PHE ARG VAL THR GLY ILE ASN ALA SEQRES 38 B 521 LEU ARG VAL VAL ASP GLY SER THR PHE PRO TYR THR PRO SEQRES 39 B 521 ALA SER HIS PRO GLN GLY PHE TYR LEU MET LEU GLY ARG SEQRES 40 B 521 TYR VAL GLY ILE LYS ILE LEU GLN GLU ARG SER ALA SER SEQRES 41 B 521 ASP MODRES 3GDN ASN A 118 ASN GLYCOSYLATION SITE MODRES 3GDN ASN A 135 ASN GLYCOSYLATION SITE MODRES 3GDN ASN A 392 ASN GLYCOSYLATION SITE MODRES 3GDN ASN B 118 ASN GLYCOSYLATION SITE MODRES 3GDN ASN B 135 ASN GLYCOSYLATION SITE MODRES 3GDN ASN B 392 ASN GLYCOSYLATION SITE HET NAG C 1 14 HET NAG C 2 14 HET MAN C 3 11 HET NAG D 1 14 HET FUC D 2 10 HET NAG D 3 14 HET NAG E 1 14 HET NAG E 2 14 HET BMA E 3 11 HET MAN E 4 11 HET FUC E 5 10 HET NAG F 1 14 HET NAG F 2 14 HET BMA F 3 11 HET MAN F 4 11 HET FAD A 522 53 HET NAG A 523 14 HET HBX A 530 8 HET MXN A 531 10 HET MXN A 532 10 HET FAD B 522 53 HET NAG B 532 14 HET HBX B 533 8 HET MXN B 534 10 HET MXN B 535 10 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM HBX BENZALDEHYDE HETNAM MXN (2R)-HYDROXY(PHENYL)ETHANENITRILE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MXN (R)-MANDELONITRILE FORMUL 3 NAG 10(C8 H15 N O6) FORMUL 3 MAN 3(C6 H12 O6) FORMUL 4 FUC 2(C6 H12 O5) FORMUL 5 BMA 2(C6 H12 O6) FORMUL 7 FAD 2(C27 H33 N9 O15 P2) FORMUL 9 HBX 2(C7 H6 O) FORMUL 10 MXN 4(C8 H7 N O) FORMUL 17 HOH *1269(H2 O) HELIX 1 1 PHE A 9 SER A 13 5 5 HELIX 2 2 THR A 19 LEU A 21 5 3 HELIX 3 3 SER A 37 SER A 46 1 10 HELIX 4 4 LEU A 59 ASP A 70 5 12 HELIX 5 5 GLY A 71 GLN A 78 1 8 HELIX 6 6 GLY A 104 ILE A 109 5 6 HELIX 7 7 ASP A 130 VAL A 146 1 17 HELIX 8 8 GLN A 152 ALA A 165 1 14 HELIX 9 9 ALA A 196 GLY A 204 5 9 HELIX 10 10 ALA A 257 SER A 269 1 13 HELIX 11 11 PRO A 273 LEU A 280 1 8 HELIX 12 12 ASN A 392 SER A 411 1 20 HELIX 13 13 LEU A 415 LYS A 419 5 5 HELIX 14 14 ASP A 442 VAL A 454 1 13 HELIX 15 15 PRO A 498 SER A 520 1 23 HELIX 16 16 PHE B 9 SER B 13 5 5 HELIX 17 17 THR B 19 LEU B 21 5 3 HELIX 18 18 SER B 37 SER B 46 1 10 HELIX 19 19 LEU B 59 ASP B 70 5 12 HELIX 20 20 GLY B 71 GLN B 78 1 8 HELIX 21 21 GLY B 104 ILE B 109 5 6 HELIX 22 22 ASP B 130 VAL B 146 1 17 HELIX 23 23 GLN B 152 ALA B 165 1 14 HELIX 24 24 ALA B 196 GLY B 204 5 9 HELIX 25 25 ALA B 257 SER B 269 1 13 HELIX 26 26 PRO B 273 LEU B 280 1 8 HELIX 27 27 ASN B 392 SER B 411 1 20 HELIX 28 28 THR B 412 LYS B 419 5 8 HELIX 29 29 ASP B 442 VAL B 454 1 13 HELIX 30 30 PRO B 498 ASP B 521 1 24 SHEET 1 A 7 ALA A 15 ASP A 17 0 SHEET 2 A 7 LEU A 209 VAL A 213 1 O VAL A 211 N TYR A 16 SHEET 3 A 7 VAL A 51 LEU A 54 1 N VAL A 53 O GLY A 212 SHEET 4 A 7 GLU A 24 VAL A 32 1 N ILE A 31 O LEU A 52 SHEET 5 A 7 PRO A 242 VAL A 255 1 O PHE A 246 N GLY A 25 SHEET 6 A 7 LEU A 228 ARG A 236 -1 N TYR A 235 O HIS A 243 SHEET 7 A 7 SER A 216 ASN A 224 -1 N ILE A 221 O THR A 231 SHEET 1 B 6 ALA A 15 ASP A 17 0 SHEET 2 B 6 LEU A 209 VAL A 213 1 O VAL A 211 N TYR A 16 SHEET 3 B 6 VAL A 51 LEU A 54 1 N VAL A 53 O GLY A 212 SHEET 4 B 6 GLU A 24 VAL A 32 1 N ILE A 31 O LEU A 52 SHEET 5 B 6 PRO A 242 VAL A 255 1 O PHE A 246 N GLY A 25 SHEET 6 B 6 LEU A 482 VAL A 484 1 O ARG A 483 N VAL A 255 SHEET 1 C 2 VAL A 86 VAL A 90 0 SHEET 2 C 2 ASP A 96 GLY A 100 -1 O ARG A 99 N GLU A 87 SHEET 1 D 2 VAL A 113 TYR A 114 0 SHEET 2 D 2 GLY A 185 SER A 186 -1 O GLY A 185 N TYR A 114 SHEET 1 E 7 ASN A 170 PHE A 173 0 SHEET 2 E 7 GLY A 180 ILE A 183 1 O THR A 181 N HIS A 171 SHEET 3 E 7 VAL A 318 ILE A 321 -1 O ILE A 321 N GLY A 180 SHEET 4 E 7 PHE A 325 SER A 332 -1 O GLN A 327 N GLY A 320 SHEET 5 E 7 PHE A 355 VAL A 362 -1 O HIS A 357 N PHE A 330 SHEET 6 E 7 PRO A 299 ILE A 305 -1 N ILE A 303 O PHE A 358 SHEET 7 E 7 ILE A 431 LEU A 432 -1 O LEU A 432 N ASN A 304 SHEET 1 F 7 ASN A 170 PHE A 173 0 SHEET 2 F 7 GLY A 180 ILE A 183 1 O THR A 181 N HIS A 171 SHEET 3 F 7 VAL A 318 ILE A 321 -1 O ILE A 321 N GLY A 180 SHEET 4 F 7 PHE A 325 SER A 332 -1 O GLN A 327 N GLY A 320 SHEET 5 F 7 PHE A 355 VAL A 362 -1 O HIS A 357 N PHE A 330 SHEET 6 F 7 PRO A 299 ILE A 305 -1 N ILE A 303 O PHE A 358 SHEET 7 F 7 ALA A 455 SER A 456 -1 O ALA A 455 N ARG A 300 SHEET 1 G 2 VAL A 271 GLY A 272 0 SHEET 2 G 2 LEU A 286 SER A 287 1 O LEU A 286 N GLY A 272 SHEET 1 H 4 ASN A 384 VAL A 385 0 SHEET 2 H 4 GLY A 369 THR A 372 -1 N THR A 372 O ASN A 384 SHEET 3 H 4 GLN A 293 HIS A 296 -1 N LEU A 295 O GLY A 369 SHEET 4 H 4 HIS A 461 GLY A 462 -1 O HIS A 461 N HIS A 296 SHEET 1 I 7 ALA B 15 ASP B 17 0 SHEET 2 I 7 LEU B 209 VAL B 213 1 O VAL B 211 N TYR B 16 SHEET 3 I 7 VAL B 51 LEU B 54 1 N VAL B 53 O GLY B 212 SHEET 4 I 7 GLU B 24 VAL B 32 1 N ILE B 31 O LEU B 52 SHEET 5 I 7 PRO B 242 VAL B 255 1 O PHE B 246 N GLY B 25 SHEET 6 I 7 ALA B 230 ARG B 236 -1 N TYR B 235 O HIS B 243 SHEET 7 I 7 SER B 216 PHE B 222 -1 N ILE B 221 O THR B 231 SHEET 1 J 6 ALA B 15 ASP B 17 0 SHEET 2 J 6 LEU B 209 VAL B 213 1 O VAL B 211 N TYR B 16 SHEET 3 J 6 VAL B 51 LEU B 54 1 N VAL B 53 O GLY B 212 SHEET 4 J 6 GLU B 24 VAL B 32 1 N ILE B 31 O LEU B 52 SHEET 5 J 6 PRO B 242 VAL B 255 1 O PHE B 246 N GLY B 25 SHEET 6 J 6 LEU B 482 VAL B 484 1 O ARG B 483 N VAL B 255 SHEET 1 K 2 VAL B 86 VAL B 90 0 SHEET 2 K 2 ASP B 96 GLY B 100 -1 O ARG B 99 N GLU B 87 SHEET 1 L 2 VAL B 113 TYR B 114 0 SHEET 2 L 2 GLY B 185 SER B 186 -1 O GLY B 185 N TYR B 114 SHEET 1 M 7 ASN B 170 PHE B 173 0 SHEET 2 M 7 GLY B 180 ILE B 183 1 O THR B 181 N HIS B 171 SHEET 3 M 7 VAL B 318 ILE B 321 -1 O ILE B 321 N GLY B 180 SHEET 4 M 7 PHE B 325 SER B 332 -1 O GLN B 327 N GLY B 320 SHEET 5 M 7 PHE B 355 VAL B 362 -1 O HIS B 357 N PHE B 330 SHEET 6 M 7 PRO B 299 ILE B 305 -1 N ILE B 303 O PHE B 358 SHEET 7 M 7 ILE B 431 LEU B 432 -1 O LEU B 432 N ASN B 304 SHEET 1 N 7 ASN B 170 PHE B 173 0 SHEET 2 N 7 GLY B 180 ILE B 183 1 O THR B 181 N HIS B 171 SHEET 3 N 7 VAL B 318 ILE B 321 -1 O ILE B 321 N GLY B 180 SHEET 4 N 7 PHE B 325 SER B 332 -1 O GLN B 327 N GLY B 320 SHEET 5 N 7 PHE B 355 VAL B 362 -1 O HIS B 357 N PHE B 330 SHEET 6 N 7 PRO B 299 ILE B 305 -1 N ILE B 303 O PHE B 358 SHEET 7 N 7 ALA B 455 SER B 456 -1 O ALA B 455 N ARG B 300 SHEET 1 O 2 VAL B 271 GLY B 272 0 SHEET 2 O 2 LEU B 286 SER B 287 1 O LEU B 286 N GLY B 272 SHEET 1 P 4 ASN B 384 VAL B 385 0 SHEET 2 P 4 GLY B 369 THR B 372 -1 N THR B 372 O ASN B 384 SHEET 3 P 4 GLN B 293 HIS B 296 -1 N LEU B 295 O GLY B 369 SHEET 4 P 4 HIS B 461 GLY B 462 -1 O HIS B 461 N HIS B 296 SSBOND 1 CYS A 399 CYS A 450 1555 1555 2.03 SSBOND 2 CYS B 399 CYS B 450 1555 1555 2.03 LINK ND2 ASN A 118 C1 NAG A 523 1555 1555 1.45 LINK ND2 ASN A 135 C1 NAG C 1 1555 1555 1.45 LINK ND2 ASN A 392 C1 NAG D 1 1555 1555 1.45 LINK ND2 ASN B 118 C1 NAG B 532 1555 1555 1.45 LINK ND2 ASN B 135 C1 NAG F 1 1555 1555 1.45 LINK ND2 ASN B 392 C1 NAG E 1 1555 1555 1.45 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.39 LINK O4 NAG C 2 C1 MAN C 3 1555 1555 1.39 LINK O3 NAG D 1 C1 FUC D 2 1555 1555 1.40 LINK O4 NAG D 1 C1 NAG D 3 1555 1555 1.39 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.39 LINK O3 NAG E 1 C1 FUC E 5 1555 1555 1.40 LINK O4 NAG E 2 C1 BMA E 3 1555 1555 1.39 LINK O3 BMA E 3 C1 MAN E 4 1555 1555 1.40 LINK O4 NAG F 1 C1 NAG F 2 1555 1555 1.39 LINK O4 NAG F 2 C1 BMA F 3 1555 1555 1.39 LINK O6 BMA F 3 C1 MAN F 4 1555 1555 1.40 CISPEP 1 HIS A 168 PRO A 169 0 0.05 CISPEP 2 ALA A 225 PRO A 226 0 -0.20 CISPEP 3 GLY A 364 PRO A 365 0 -0.32 CISPEP 4 HIS B 168 PRO B 169 0 0.04 CISPEP 5 ALA B 225 PRO B 226 0 1.20 CISPEP 6 GLY B 364 PRO B 365 0 -0.21 CRYST1 68.980 93.790 86.900 90.00 106.47 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014497 0.000000 0.004286 0.00000 SCALE2 0.000000 0.010662 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012000 0.00000