HEADER HYDROLASE/HYDROLASE ACTIVATOR 24-FEB-09 3GDV TITLE CRYSTAL STRUCTURE OF DEGS H198P/D320A MUTANT MODIFIED BY DFP AND IN TITLE 2 COMPLEX WITH YQF PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DEGS PROTEASE; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: FULL-LENGTH WITHOUT MEMBRANE ANCHOR; COMPND 5 EC: 3.4.21.-; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: YQF PEPTIDE; COMPND 10 CHAIN: D, E, F; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K-12; SOURCE 5 GENE: B3235, DEGS, HHOB, HTRH, JW3204; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: X90(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21B; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES KEYWDS PROTEASE, STRESS-SENSOR, HTRA, PDZ OMP, HYDROLASE, SERINE PROTEASE, KEYWDS 2 HYDROLASE-HYDROLASE ACTIVATOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.SOHN,R.A.GRANT,R.T.SAUER REVDAT 4 20-OCT-21 3GDV 1 SEQADV LINK REVDAT 3 01-NOV-17 3GDV 1 REMARK REVDAT 2 03-NOV-09 3GDV 1 JRNL REVDAT 1 31-MAR-09 3GDV 0 JRNL AUTH J.SOHN,R.A.GRANT,R.T.SAUER JRNL TITL OMP PEPTIDES ACTIVATE THE DEGS STRESS-SENSOR PROTEASE BY A JRNL TITL 2 RELIEF OF INHIBITION MECHANISM. JRNL REF STRUCTURE V. 17 1411 2009 JRNL REFN ISSN 0969-2126 JRNL PMID 19836340 JRNL DOI 10.1016/J.STR.2009.07.017 REMARK 2 REMARK 2 RESOLUTION. 2.49 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.49 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.04 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 3 NUMBER OF REFLECTIONS : 39869 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 2002 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.0413 - 5.9870 0.97 2895 159 0.1921 0.2002 REMARK 3 2 5.9870 - 4.7571 0.99 2834 153 0.1721 0.2088 REMARK 3 3 4.7571 - 4.1572 0.99 2840 139 0.1463 0.1638 REMARK 3 4 4.1572 - 3.7778 0.99 2818 137 0.1789 0.1964 REMARK 3 5 3.7778 - 3.5073 0.99 2778 153 0.1833 0.2222 REMARK 3 6 3.5073 - 3.3008 0.99 2811 132 0.1885 0.2303 REMARK 3 7 3.3008 - 3.1356 1.00 2823 143 0.2061 0.2831 REMARK 3 8 3.1356 - 2.9992 1.00 2754 158 0.2056 0.2577 REMARK 3 9 2.9992 - 2.8838 0.99 2782 172 0.2162 0.2691 REMARK 3 10 2.8838 - 2.7844 0.99 2766 157 0.2200 0.2530 REMARK 3 11 2.7844 - 2.6974 0.99 2739 146 0.2144 0.2611 REMARK 3 12 2.6974 - 2.6203 0.95 2652 127 0.2092 0.2349 REMARK 3 13 2.6203 - 2.5514 0.87 2430 113 0.2123 0.2525 REMARK 3 14 2.5514 - 2.4890 0.70 1945 113 0.2107 0.2602 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.32 REMARK 3 B_SOL : 62.76 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.320 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.390 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 73.72 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 6663 REMARK 3 ANGLE : 0.830 9067 REMARK 3 CHIRALITY : 0.056 1100 REMARK 3 PLANARITY : 0.003 1195 REMARK 3 DIHEDRAL : 14.636 2429 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN F REMARK 3 ORIGIN FOR THE GROUP (A): -15.0009 74.1517 6.7074 REMARK 3 T TENSOR REMARK 3 T11: 0.0336 T22: 0.1533 REMARK 3 T33: 0.4065 T12: 0.0338 REMARK 3 T13: 0.0068 T23: 0.1459 REMARK 3 L TENSOR REMARK 3 L11: 0.4815 L22: 0.9795 REMARK 3 L33: 0.7293 L12: 0.2366 REMARK 3 L13: -0.3949 L23: -0.3993 REMARK 3 S TENSOR REMARK 3 S11: 0.0797 S12: -0.1817 S13: -0.2528 REMARK 3 S21: -0.0382 S22: -0.3318 S23: -0.1788 REMARK 3 S31: 0.1137 S32: 0.2565 S33: 0.2304 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3GDV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-MAR-09. REMARK 100 THE DEPOSITION ID IS D_1000051737. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-OCT-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : CRYSTAL MONOCHROMETER REMARK 200 OPTICS : CRYSTAL MONOCHROMETER REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39897 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.489 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.9670 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.49 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 79.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.24300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.89 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM TRIS 100MM MGCL2 3% PEG 6000, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K, PH 6 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.38400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 57.38400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 59.44000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 86.13900 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 59.44000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 86.13900 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 57.38400 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 59.44000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 86.13900 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 57.38400 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 59.44000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 86.13900 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8990 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 38310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -37.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 16 REMARK 465 ARG A 17 REMARK 465 GLY A 18 REMARK 465 SER A 19 REMARK 465 HIS A 20 REMARK 465 HIS A 21 REMARK 465 HIS A 22 REMARK 465 HIS A 23 REMARK 465 HIS A 24 REMARK 465 HIS A 25 REMARK 465 GLY A 26 REMARK 465 ARG A 27 REMARK 465 SER A 28 REMARK 465 LEU A 29 REMARK 465 ASN A 30 REMARK 465 PRO A 31 REMARK 465 LEU A 32 REMARK 465 SER A 33 REMARK 465 THR A 34 REMARK 465 PRO A 35 REMARK 465 GLN A 36 REMARK 465 PHE A 37 REMARK 465 THR A 68 REMARK 465 ASN A 69 REMARK 465 SER A 70 REMARK 465 HIS A 71 REMARK 465 ASN A 224 REMARK 465 ASP A 225 REMARK 465 ILE A 266 REMARK 465 ALA A 267 REMARK 465 PRO A 268 REMARK 465 LEU A 269 REMARK 465 HIS A 270 REMARK 465 ALA A 271 REMARK 465 GLN A 272 REMARK 465 GLY A 273 REMARK 465 GLY A 274 REMARK 465 GLY A 275 REMARK 465 ILE A 276 REMARK 465 ASP A 277 REMARK 465 GLN A 278 REMARK 465 LEU A 279 REMARK 465 THR A 354 REMARK 465 ASN A 355 REMARK 465 MET B 16 REMARK 465 ARG B 17 REMARK 465 GLY B 18 REMARK 465 SER B 19 REMARK 465 HIS B 20 REMARK 465 HIS B 21 REMARK 465 HIS B 22 REMARK 465 HIS B 23 REMARK 465 HIS B 24 REMARK 465 HIS B 25 REMARK 465 GLY B 26 REMARK 465 ARG B 27 REMARK 465 SER B 28 REMARK 465 LEU B 29 REMARK 465 ASN B 30 REMARK 465 PRO B 31 REMARK 465 LEU B 32 REMARK 465 SER B 33 REMARK 465 THR B 34 REMARK 465 PRO B 35 REMARK 465 GLN B 36 REMARK 465 LYS B 222 REMARK 465 SER B 223 REMARK 465 ASN B 224 REMARK 465 ASP B 225 REMARK 465 GLY B 262 REMARK 465 GLY B 263 REMARK 465 ARG B 264 REMARK 465 GLU B 265 REMARK 465 ILE B 266 REMARK 465 ALA B 267 REMARK 465 PRO B 268 REMARK 465 LEU B 269 REMARK 465 HIS B 270 REMARK 465 ALA B 271 REMARK 465 GLN B 272 REMARK 465 GLY B 273 REMARK 465 GLY B 274 REMARK 465 GLY B 275 REMARK 465 ILE B 276 REMARK 465 ASP B 277 REMARK 465 GLN B 278 REMARK 465 LEU B 279 REMARK 465 GLN B 280 REMARK 465 GLY B 281 REMARK 465 SER B 314 REMARK 465 ALA B 315 REMARK 465 VAL B 335 REMARK 465 MET B 336 REMARK 465 ARG B 337 REMARK 465 ASP B 338 REMARK 465 ASP B 339 REMARK 465 LYS B 340 REMARK 465 GLN B 341 REMARK 465 LEU B 342 REMARK 465 ASN B 355 REMARK 465 MET C 16 REMARK 465 ARG C 17 REMARK 465 GLY C 18 REMARK 465 SER C 19 REMARK 465 HIS C 20 REMARK 465 HIS C 21 REMARK 465 HIS C 22 REMARK 465 HIS C 23 REMARK 465 HIS C 24 REMARK 465 HIS C 25 REMARK 465 GLY C 26 REMARK 465 ARG C 27 REMARK 465 SER C 28 REMARK 465 LEU C 29 REMARK 465 ASN C 30 REMARK 465 PRO C 31 REMARK 465 LEU C 32 REMARK 465 SER C 33 REMARK 465 THR C 34 REMARK 465 PRO C 35 REMARK 465 GLN C 36 REMARK 465 PHE C 37 REMARK 465 ASP C 38 REMARK 465 SER C 39 REMARK 465 THR C 40 REMARK 465 ASP C 41 REMARK 465 THR C 68 REMARK 465 ASN C 69 REMARK 465 SER C 70 REMARK 465 HIS C 71 REMARK 465 ASN C 72 REMARK 465 LEU C 181 REMARK 465 SER C 223 REMARK 465 ASN C 224 REMARK 465 ASP C 225 REMARK 465 GLY C 226 REMARK 465 LEU C 269 REMARK 465 HIS C 270 REMARK 465 ALA C 271 REMARK 465 GLN C 272 REMARK 465 GLY C 273 REMARK 465 GLY C 274 REMARK 465 GLY C 275 REMARK 465 ILE C 276 REMARK 465 ASP C 277 REMARK 465 ASN C 355 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 38 CG OD1 OD2 REMARK 470 ARG A 186 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 286 CG CD OE1 OE2 REMARK 470 ARG B 186 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 227 CG CD OE1 OE2 REMARK 470 ASN B 285 CG OD1 ND2 REMARK 470 GLN B 345 CG CD OE1 NE2 REMARK 470 LEU C 66 CG CD1 CD2 REMARK 470 ASN C 67 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 217 -42.34 -135.11 REMARK 500 ASN A 301 4.78 83.64 REMARK 500 SER B 70 -102.31 -111.04 REMARK 500 ASN B 133 42.52 -107.50 REMARK 500 ASN B 160 60.43 -118.39 REMARK 500 ALA B 175 162.73 175.48 REMARK 500 ILE B 179 -8.18 75.84 REMARK 500 THR B 184 -128.63 52.26 REMARK 500 THR B 217 -34.43 -133.53 REMARK 500 ASN B 285 -30.87 -132.00 REMARK 500 ASN B 301 -0.03 80.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3GDS RELATED DB: PDB REMARK 900 RELATED ID: 3GDU RELATED DB: PDB DBREF 3GDV A 27 355 UNP P0AEE3 DEGS_ECOLI 27 355 DBREF 3GDV B 27 355 UNP P0AEE3 DEGS_ECOLI 27 355 DBREF 3GDV C 27 355 UNP P0AEE3 DEGS_ECOLI 27 355 DBREF 3GDV D 408 410 PDB 3GDV 3GDV 408 410 DBREF 3GDV E 408 410 PDB 3GDV 3GDV 408 410 DBREF 3GDV F 408 410 PDB 3GDV 3GDV 408 410 SEQADV 3GDV MET A 16 UNP P0AEE3 EXPRESSION TAG SEQADV 3GDV ARG A 17 UNP P0AEE3 EXPRESSION TAG SEQADV 3GDV GLY A 18 UNP P0AEE3 EXPRESSION TAG SEQADV 3GDV SER A 19 UNP P0AEE3 EXPRESSION TAG SEQADV 3GDV HIS A 20 UNP P0AEE3 EXPRESSION TAG SEQADV 3GDV HIS A 21 UNP P0AEE3 EXPRESSION TAG SEQADV 3GDV HIS A 22 UNP P0AEE3 EXPRESSION TAG SEQADV 3GDV HIS A 23 UNP P0AEE3 EXPRESSION TAG SEQADV 3GDV HIS A 24 UNP P0AEE3 EXPRESSION TAG SEQADV 3GDV HIS A 25 UNP P0AEE3 EXPRESSION TAG SEQADV 3GDV GLY A 26 UNP P0AEE3 EXPRESSION TAG SEQADV 3GDV PRO A 198 UNP P0AEE3 HIS 198 ENGINEERED MUTATION SEQADV 3GDV ALA A 320 UNP P0AEE3 ASP 320 ENGINEERED MUTATION SEQADV 3GDV MET B 16 UNP P0AEE3 EXPRESSION TAG SEQADV 3GDV ARG B 17 UNP P0AEE3 EXPRESSION TAG SEQADV 3GDV GLY B 18 UNP P0AEE3 EXPRESSION TAG SEQADV 3GDV SER B 19 UNP P0AEE3 EXPRESSION TAG SEQADV 3GDV HIS B 20 UNP P0AEE3 EXPRESSION TAG SEQADV 3GDV HIS B 21 UNP P0AEE3 EXPRESSION TAG SEQADV 3GDV HIS B 22 UNP P0AEE3 EXPRESSION TAG SEQADV 3GDV HIS B 23 UNP P0AEE3 EXPRESSION TAG SEQADV 3GDV HIS B 24 UNP P0AEE3 EXPRESSION TAG SEQADV 3GDV HIS B 25 UNP P0AEE3 EXPRESSION TAG SEQADV 3GDV GLY B 26 UNP P0AEE3 EXPRESSION TAG SEQADV 3GDV PRO B 198 UNP P0AEE3 HIS 198 ENGINEERED MUTATION SEQADV 3GDV ALA B 320 UNP P0AEE3 ASP 320 ENGINEERED MUTATION SEQADV 3GDV MET C 16 UNP P0AEE3 EXPRESSION TAG SEQADV 3GDV ARG C 17 UNP P0AEE3 EXPRESSION TAG SEQADV 3GDV GLY C 18 UNP P0AEE3 EXPRESSION TAG SEQADV 3GDV SER C 19 UNP P0AEE3 EXPRESSION TAG SEQADV 3GDV HIS C 20 UNP P0AEE3 EXPRESSION TAG SEQADV 3GDV HIS C 21 UNP P0AEE3 EXPRESSION TAG SEQADV 3GDV HIS C 22 UNP P0AEE3 EXPRESSION TAG SEQADV 3GDV HIS C 23 UNP P0AEE3 EXPRESSION TAG SEQADV 3GDV HIS C 24 UNP P0AEE3 EXPRESSION TAG SEQADV 3GDV HIS C 25 UNP P0AEE3 EXPRESSION TAG SEQADV 3GDV GLY C 26 UNP P0AEE3 EXPRESSION TAG SEQADV 3GDV PRO C 198 UNP P0AEE3 HIS 198 ENGINEERED MUTATION SEQADV 3GDV ALA C 320 UNP P0AEE3 ASP 320 ENGINEERED MUTATION SEQRES 1 A 340 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY ARG SER SEQRES 2 A 340 LEU ASN PRO LEU SER THR PRO GLN PHE ASP SER THR ASP SEQRES 3 A 340 GLU THR PRO ALA SER TYR ASN LEU ALA VAL ARG ARG ALA SEQRES 4 A 340 ALA PRO ALA VAL VAL ASN VAL TYR ASN ARG GLY LEU ASN SEQRES 5 A 340 THR ASN SER HIS ASN GLN LEU GLU ILE ARG THR LEU GLY SEQRES 6 A 340 SER GLY VAL ILE MET ASP GLN ARG GLY TYR ILE ILE THR SEQRES 7 A 340 ASN LYS HIS VAL ILE ASN ASP ALA ASP GLN ILE ILE VAL SEQRES 8 A 340 ALA LEU GLN ASP GLY ARG VAL PHE GLU ALA LEU LEU VAL SEQRES 9 A 340 GLY SER ASP SER LEU THR ASP LEU ALA VAL LEU LYS ILE SEQRES 10 A 340 ASN ALA THR GLY GLY LEU PRO THR ILE PRO ILE ASN ALA SEQRES 11 A 340 ARG ARG VAL PRO HIS ILE GLY ASP VAL VAL LEU ALA ILE SEQRES 12 A 340 GLY ASN PRO TYR ASN LEU GLY GLN THR ILE THR GLN GLY SEQRES 13 A 340 ILE ILE SER ALA THR GLY ARG ILE GLY LEU ASN PRO THR SEQRES 14 A 340 GLY ARG GLN ASN PHE LEU GLN THR ASP ALA SER ILE ASN SEQRES 15 A 340 PRO GLY ASN MIS GLY GLY ALA LEU VAL ASN SER LEU GLY SEQRES 16 A 340 GLU LEU MET GLY ILE ASN THR LEU SER PHE ASP LYS SER SEQRES 17 A 340 ASN ASP GLY GLU THR PRO GLU GLY ILE GLY PHE ALA ILE SEQRES 18 A 340 PRO PHE GLN LEU ALA THR LYS ILE MET ASP LYS LEU ILE SEQRES 19 A 340 ARG ASP GLY ARG VAL ILE ARG GLY TYR ILE GLY ILE GLY SEQRES 20 A 340 GLY ARG GLU ILE ALA PRO LEU HIS ALA GLN GLY GLY GLY SEQRES 21 A 340 ILE ASP GLN LEU GLN GLY ILE VAL VAL ASN GLU VAL SER SEQRES 22 A 340 PRO ASP GLY PRO ALA ALA ASN ALA GLY ILE GLN VAL ASN SEQRES 23 A 340 ASP LEU ILE ILE SER VAL ASP ASN LYS PRO ALA ILE SER SEQRES 24 A 340 ALA LEU GLU THR MET ALA GLN VAL ALA GLU ILE ARG PRO SEQRES 25 A 340 GLY SER VAL ILE PRO VAL VAL VAL MET ARG ASP ASP LYS SEQRES 26 A 340 GLN LEU THR LEU GLN VAL THR ILE GLN GLU TYR PRO ALA SEQRES 27 A 340 THR ASN SEQRES 1 B 340 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY ARG SER SEQRES 2 B 340 LEU ASN PRO LEU SER THR PRO GLN PHE ASP SER THR ASP SEQRES 3 B 340 GLU THR PRO ALA SER TYR ASN LEU ALA VAL ARG ARG ALA SEQRES 4 B 340 ALA PRO ALA VAL VAL ASN VAL TYR ASN ARG GLY LEU ASN SEQRES 5 B 340 THR ASN SER HIS ASN GLN LEU GLU ILE ARG THR LEU GLY SEQRES 6 B 340 SER GLY VAL ILE MET ASP GLN ARG GLY TYR ILE ILE THR SEQRES 7 B 340 ASN LYS HIS VAL ILE ASN ASP ALA ASP GLN ILE ILE VAL SEQRES 8 B 340 ALA LEU GLN ASP GLY ARG VAL PHE GLU ALA LEU LEU VAL SEQRES 9 B 340 GLY SER ASP SER LEU THR ASP LEU ALA VAL LEU LYS ILE SEQRES 10 B 340 ASN ALA THR GLY GLY LEU PRO THR ILE PRO ILE ASN ALA SEQRES 11 B 340 ARG ARG VAL PRO HIS ILE GLY ASP VAL VAL LEU ALA ILE SEQRES 12 B 340 GLY ASN PRO TYR ASN LEU GLY GLN THR ILE THR GLN GLY SEQRES 13 B 340 ILE ILE SER ALA THR GLY ARG ILE GLY LEU ASN PRO THR SEQRES 14 B 340 GLY ARG GLN ASN PHE LEU GLN THR ASP ALA SER ILE ASN SEQRES 15 B 340 PRO GLY ASN MIS GLY GLY ALA LEU VAL ASN SER LEU GLY SEQRES 16 B 340 GLU LEU MET GLY ILE ASN THR LEU SER PHE ASP LYS SER SEQRES 17 B 340 ASN ASP GLY GLU THR PRO GLU GLY ILE GLY PHE ALA ILE SEQRES 18 B 340 PRO PHE GLN LEU ALA THR LYS ILE MET ASP LYS LEU ILE SEQRES 19 B 340 ARG ASP GLY ARG VAL ILE ARG GLY TYR ILE GLY ILE GLY SEQRES 20 B 340 GLY ARG GLU ILE ALA PRO LEU HIS ALA GLN GLY GLY GLY SEQRES 21 B 340 ILE ASP GLN LEU GLN GLY ILE VAL VAL ASN GLU VAL SER SEQRES 22 B 340 PRO ASP GLY PRO ALA ALA ASN ALA GLY ILE GLN VAL ASN SEQRES 23 B 340 ASP LEU ILE ILE SER VAL ASP ASN LYS PRO ALA ILE SER SEQRES 24 B 340 ALA LEU GLU THR MET ALA GLN VAL ALA GLU ILE ARG PRO SEQRES 25 B 340 GLY SER VAL ILE PRO VAL VAL VAL MET ARG ASP ASP LYS SEQRES 26 B 340 GLN LEU THR LEU GLN VAL THR ILE GLN GLU TYR PRO ALA SEQRES 27 B 340 THR ASN SEQRES 1 C 340 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY ARG SER SEQRES 2 C 340 LEU ASN PRO LEU SER THR PRO GLN PHE ASP SER THR ASP SEQRES 3 C 340 GLU THR PRO ALA SER TYR ASN LEU ALA VAL ARG ARG ALA SEQRES 4 C 340 ALA PRO ALA VAL VAL ASN VAL TYR ASN ARG GLY LEU ASN SEQRES 5 C 340 THR ASN SER HIS ASN GLN LEU GLU ILE ARG THR LEU GLY SEQRES 6 C 340 SER GLY VAL ILE MET ASP GLN ARG GLY TYR ILE ILE THR SEQRES 7 C 340 ASN LYS HIS VAL ILE ASN ASP ALA ASP GLN ILE ILE VAL SEQRES 8 C 340 ALA LEU GLN ASP GLY ARG VAL PHE GLU ALA LEU LEU VAL SEQRES 9 C 340 GLY SER ASP SER LEU THR ASP LEU ALA VAL LEU LYS ILE SEQRES 10 C 340 ASN ALA THR GLY GLY LEU PRO THR ILE PRO ILE ASN ALA SEQRES 11 C 340 ARG ARG VAL PRO HIS ILE GLY ASP VAL VAL LEU ALA ILE SEQRES 12 C 340 GLY ASN PRO TYR ASN LEU GLY GLN THR ILE THR GLN GLY SEQRES 13 C 340 ILE ILE SER ALA THR GLY ARG ILE GLY LEU ASN PRO THR SEQRES 14 C 340 GLY ARG GLN ASN PHE LEU GLN THR ASP ALA SER ILE ASN SEQRES 15 C 340 PRO GLY ASN MIS GLY GLY ALA LEU VAL ASN SER LEU GLY SEQRES 16 C 340 GLU LEU MET GLY ILE ASN THR LEU SER PHE ASP LYS SER SEQRES 17 C 340 ASN ASP GLY GLU THR PRO GLU GLY ILE GLY PHE ALA ILE SEQRES 18 C 340 PRO PHE GLN LEU ALA THR LYS ILE MET ASP LYS LEU ILE SEQRES 19 C 340 ARG ASP GLY ARG VAL ILE ARG GLY TYR ILE GLY ILE GLY SEQRES 20 C 340 GLY ARG GLU ILE ALA PRO LEU HIS ALA GLN GLY GLY GLY SEQRES 21 C 340 ILE ASP GLN LEU GLN GLY ILE VAL VAL ASN GLU VAL SER SEQRES 22 C 340 PRO ASP GLY PRO ALA ALA ASN ALA GLY ILE GLN VAL ASN SEQRES 23 C 340 ASP LEU ILE ILE SER VAL ASP ASN LYS PRO ALA ILE SER SEQRES 24 C 340 ALA LEU GLU THR MET ALA GLN VAL ALA GLU ILE ARG PRO SEQRES 25 C 340 GLY SER VAL ILE PRO VAL VAL VAL MET ARG ASP ASP LYS SEQRES 26 C 340 GLN LEU THR LEU GLN VAL THR ILE GLN GLU TYR PRO ALA SEQRES 27 C 340 THR ASN SEQRES 1 D 3 TYR GLN PHE SEQRES 1 E 3 TYR GLN PHE SEQRES 1 F 3 TYR GLN PHE MODRES 3GDV MIS A 201 SER MONOISOPROPYLPHOSPHORYLSERINE MODRES 3GDV MIS B 201 SER MONOISOPROPYLPHOSPHORYLSERINE MODRES 3GDV MIS C 201 SER MONOISOPROPYLPHOSPHORYLSERINE HET MIS A 201 13 HET MIS B 201 13 HET MIS C 201 13 HETNAM MIS MONOISOPROPYLPHOSPHORYLSERINE FORMUL 1 MIS 3(C6 H14 N O6 P) FORMUL 7 HOH *78(H2 O) HELIX 1 1 ASP A 38 GLU A 42 5 5 HELIX 2 2 TYR A 47 ALA A 55 1 9 HELIX 3 3 LYS A 95 ASN A 99 1 5 HELIX 4 4 ASN A 160 LEU A 164 5 5 HELIX 5 5 PHE A 238 ASP A 251 1 14 HELIX 6 6 GLY A 291 GLY A 297 1 7 HELIX 7 7 SER A 314 ILE A 325 1 12 HELIX 8 8 TYR B 47 ALA B 55 1 9 HELIX 9 9 LYS B 95 ASN B 99 1 5 HELIX 10 10 ASN B 160 LEU B 164 5 5 HELIX 11 11 PHE B 238 GLY B 252 1 15 HELIX 12 12 LEU B 316 ILE B 325 1 10 HELIX 13 13 TYR C 47 ALA C 55 1 9 HELIX 14 14 LYS C 95 ASN C 99 1 5 HELIX 15 15 ASN C 160 LEU C 164 5 5 HELIX 16 16 PHE C 238 GLY C 252 1 15 HELIX 17 17 GLY C 291 GLY C 297 1 7 HELIX 18 18 SER C 314 ILE C 325 1 12 SHEET 1 A 7 VAL A 58 GLY A 65 0 SHEET 2 A 7 GLU A 75 ILE A 84 -1 O ARG A 77 N ASN A 63 SHEET 3 A 7 TYR A 90 ASN A 94 -1 O ILE A 92 N VAL A 83 SHEET 4 A 7 LEU A 127 LYS A 131 -1 O LEU A 130 N ILE A 91 SHEET 5 A 7 VAL A 113 ASP A 122 -1 N ASP A 122 O LEU A 127 SHEET 6 A 7 GLN A 103 ALA A 107 -1 N VAL A 106 O PHE A 114 SHEET 7 A 7 VAL A 58 GLY A 65 -1 N ARG A 64 O GLN A 103 SHEET 1 B 7 VAL A 154 GLY A 159 0 SHEET 2 B 7 THR A 167 ARG A 178 -1 O THR A 167 N GLY A 159 SHEET 3 B 7 PHE A 189 THR A 192 -1 O GLN A 191 N SER A 174 SHEET 4 B 7 GLY A 233 PRO A 237 -1 O ALA A 235 N LEU A 190 SHEET 5 B 7 LEU A 212 SER A 219 -1 N LEU A 218 O PHE A 234 SHEET 6 B 7 ALA A 204 ASN A 207 -1 N LEU A 205 O MET A 213 SHEET 7 B 7 VAL A 154 GLY A 159 -1 N LEU A 156 O VAL A 206 SHEET 1 C 2 GLY A 257 TYR A 258 0 SHEET 2 C 2 GLN A 349 GLU A 350 -1 O GLN A 349 N TYR A 258 SHEET 1 D 4 ILE A 261 ARG A 264 0 SHEET 2 D 4 ILE A 282 VAL A 287 -1 O GLU A 286 N GLY A 262 SHEET 3 D 4 LEU A 303 VAL A 307 -1 O ILE A 304 N ILE A 282 SHEET 4 D 4 LYS A 310 PRO A 311 -1 O LYS A 310 N VAL A 307 SHEET 1 E 5 ILE A 261 ARG A 264 0 SHEET 2 E 5 ILE A 282 VAL A 287 -1 O GLU A 286 N GLY A 262 SHEET 3 E 5 LEU A 303 VAL A 307 -1 O ILE A 304 N ILE A 282 SHEET 4 E 5 VAL A 330 ARG A 337 -1 O MET A 336 N LEU A 303 SHEET 5 E 5 LYS A 340 THR A 347 -1 O LEU A 342 N VAL A 335 SHEET 1 F 7 VAL B 113 GLU B 115 0 SHEET 2 F 7 GLN B 103 ALA B 107 -1 N VAL B 106 O PHE B 114 SHEET 3 F 7 VAL B 58 LEU B 66 -1 N ARG B 64 O GLN B 103 SHEET 4 F 7 LEU B 74 ASP B 86 -1 O THR B 78 N ASN B 63 SHEET 5 F 7 TYR B 90 ASN B 94 -1 O ILE B 92 N VAL B 83 SHEET 6 F 7 LEU B 127 LYS B 131 -1 O LEU B 130 N ILE B 91 SHEET 7 F 7 LEU B 117 ASP B 122 -1 N GLY B 120 O VAL B 129 SHEET 1 G 7 VAL B 154 GLY B 159 0 SHEET 2 G 7 THR B 167 ALA B 175 -1 O THR B 167 N GLY B 159 SHEET 3 G 7 LEU B 190 THR B 192 -1 O GLN B 191 N SER B 174 SHEET 4 G 7 GLY B 233 PRO B 237 -1 O ALA B 235 N LEU B 190 SHEET 5 G 7 LEU B 212 SER B 219 -1 N LEU B 218 O PHE B 234 SHEET 6 G 7 ALA B 204 VAL B 206 -1 N LEU B 205 O MET B 213 SHEET 7 G 7 VAL B 154 GLY B 159 -1 N LEU B 156 O VAL B 206 SHEET 1 H 2 GLY B 257 TYR B 258 0 SHEET 2 H 2 GLN B 349 GLU B 350 -1 O GLN B 349 N TYR B 258 SHEET 1 I 2 VAL B 330 VAL B 333 0 SHEET 2 I 2 LEU B 344 THR B 347 -1 O VAL B 346 N ILE B 331 SHEET 1 J 7 VAL C 113 GLU C 115 0 SHEET 2 J 7 GLN C 103 ALA C 107 -1 N VAL C 106 O PHE C 114 SHEET 3 J 7 VAL C 58 GLY C 65 -1 N TYR C 62 O ILE C 105 SHEET 4 J 7 GLU C 75 ILE C 84 -1 O GLU C 75 N GLY C 65 SHEET 5 J 7 TYR C 90 ASN C 94 -1 O ILE C 92 N VAL C 83 SHEET 6 J 7 LEU C 127 LYS C 131 -1 O LEU C 130 N ILE C 91 SHEET 7 J 7 LEU C 117 ASP C 122 -1 N ASP C 122 O LEU C 127 SHEET 1 K 7 VAL C 154 GLY C 159 0 SHEET 2 K 7 THR C 167 ARG C 178 -1 O THR C 167 N GLY C 159 SHEET 3 K 7 PHE C 189 THR C 192 -1 O GLN C 191 N SER C 174 SHEET 4 K 7 GLY C 233 PRO C 237 -1 O ALA C 235 N LEU C 190 SHEET 5 K 7 LEU C 212 SER C 219 -1 N LEU C 218 O PHE C 234 SHEET 6 K 7 ALA C 204 ASN C 207 -1 N LEU C 205 O MET C 213 SHEET 7 K 7 VAL C 154 GLY C 159 -1 N ILE C 158 O ALA C 204 SHEET 1 L 2 GLY C 257 TYR C 258 0 SHEET 2 L 2 GLN C 349 GLU C 350 -1 O GLN C 349 N TYR C 258 SHEET 1 M 4 LYS C 310 PRO C 311 0 SHEET 2 M 4 LEU C 303 VAL C 307 -1 N VAL C 307 O LYS C 310 SHEET 3 M 4 VAL C 330 ARG C 337 -1 O VAL C 334 N ILE C 305 SHEET 4 M 4 LYS C 340 THR C 347 -1 O LEU C 344 N VAL C 333 SHEET 1 N 5 LYS C 310 PRO C 311 0 SHEET 2 N 5 LEU C 303 VAL C 307 -1 N VAL C 307 O LYS C 310 SHEET 3 N 5 ILE C 282 VAL C 287 -1 N ILE C 282 O ILE C 304 SHEET 4 N 5 ILE C 261 GLU C 265 -1 N GLY C 262 O ASN C 285 SHEET 5 N 5 GLN F 409 PHE F 410 -1 O PHE F 410 N ILE C 261 LINK C ASN A 200 N MIS A 201 1555 1555 1.33 LINK C MIS A 201 N GLY A 202 1555 1555 1.33 LINK C ASN B 200 N MIS B 201 1555 1555 1.33 LINK C MIS B 201 N GLY B 202 1555 1555 1.33 LINK C ASN C 200 N MIS C 201 1555 1555 1.33 LINK C MIS C 201 N GLY C 202 1555 1555 1.33 CRYST1 118.880 172.278 114.768 90.00 90.00 90.00 C 2 2 21 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008412 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005805 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008713 0.00000