HEADER OXIDOREDUCTASE 25-FEB-09 3GED TITLE FINGERPRINT AND STRUCTURAL ANALYSIS OF A APO SCOR ENZYME FROM TITLE 2 CLOSTRIDIUM THERMOCELLUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: SHORT-CHAIN DEHYDROGENASE/REDUCTASE SDR; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM THERMOCELLUM ATCC 27405; SOURCE 3 ORGANISM_TAXID: 203119; SOURCE 4 STRAIN: STRAIN ATCC 27405 / DSM 1237; SOURCE 5 GENE: CTHE_1510; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PETSUMO KEYWDS SDR, SCOR, ROSSMANN FOLD, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR R.HUETHER,Z.J.LIU,H.XU,B.C.WANG,V.PLETNEV,Q.MAO,T.UMLAND,W.DUAX REVDAT 6 06-SEP-23 3GED 1 REMARK LINK REVDAT 5 01-NOV-17 3GED 1 REMARK REVDAT 4 13-JUL-11 3GED 1 VERSN REVDAT 3 02-MAR-10 3GED 1 JRNL REVDAT 2 07-APR-09 3GED 1 HETNAM REVDAT 1 17-MAR-09 3GED 0 SPRSDE 17-MAR-09 3GED 3DII JRNL AUTH R.HUETHER,Z.J.LIU,H.XU,B.C.WANG,V.Z.PLETNEV,Q.MAO,W.L.DUAX, JRNL AUTH 2 T.C.UMLAND JRNL TITL SEQUENCE FINGERPRINT AND STRUCTURAL ANALYSIS OF THE SCOR JRNL TITL 2 ENZYME A3DFK9 FROM CLOSTRIDIUM THERMOCELLUM. JRNL REF PROTEINS V. 78 603 2010 JRNL REFN ISSN 0887-3585 JRNL PMID 19774618 JRNL DOI 10.1002/PROT.22584 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.68 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 68407 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 3442 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.7050 - 4.9640 0.98 2798 148 0.1980 0.2090 REMARK 3 2 4.9640 - 3.9410 0.99 2721 133 0.1440 0.1790 REMARK 3 3 3.9410 - 3.4430 0.99 2681 129 0.1450 0.1760 REMARK 3 4 3.4430 - 3.1280 1.00 2675 145 0.1550 0.1670 REMARK 3 5 3.1280 - 2.9040 1.00 2664 157 0.1810 0.2080 REMARK 3 6 2.9040 - 2.7330 1.00 2667 130 0.1830 0.2180 REMARK 3 7 2.7330 - 2.5960 0.99 2643 128 0.1700 0.2110 REMARK 3 8 2.5960 - 2.4830 0.99 2676 119 0.1720 0.2000 REMARK 3 9 2.4830 - 2.3870 0.99 2625 148 0.1610 0.1700 REMARK 3 10 2.3870 - 2.3050 0.99 2621 154 0.1740 0.2080 REMARK 3 11 2.3050 - 2.2330 0.93 2475 123 0.2350 0.2590 REMARK 3 12 2.2330 - 2.1690 0.95 2502 130 0.1920 0.2420 REMARK 3 13 2.1690 - 2.1120 0.99 2603 138 0.1650 0.1830 REMARK 3 14 2.1120 - 2.0600 0.99 2636 118 0.1620 0.1900 REMARK 3 15 2.0600 - 2.0140 0.99 2621 156 0.1600 0.2130 REMARK 3 16 2.0140 - 1.9710 0.99 2594 137 0.1650 0.1950 REMARK 3 17 1.9710 - 1.9310 0.94 2437 157 0.2110 0.2570 REMARK 3 18 1.9310 - 1.8950 0.88 2331 118 0.3850 0.4690 REMARK 3 19 1.8950 - 1.8610 0.92 2442 126 0.2110 0.2590 REMARK 3 20 1.8610 - 1.8290 0.99 2581 145 0.1770 0.2050 REMARK 3 21 1.8290 - 1.8000 1.00 2606 157 0.1840 0.2340 REMARK 3 22 1.8000 - 1.7720 1.00 2624 136 0.1940 0.2210 REMARK 3 23 1.7720 - 1.7460 1.00 2620 131 0.2020 0.2550 REMARK 3 24 1.7460 - 1.7220 0.99 2594 130 0.2020 0.2370 REMARK 3 25 1.7220 - 1.6980 0.96 2528 149 0.2150 0.2330 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.37 REMARK 3 B_SOL : 66.21 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.97 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.33900 REMARK 3 B22 (A**2) : -0.33900 REMARK 3 B33 (A**2) : 0.67700 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 3866 REMARK 3 ANGLE : 1.327 5220 REMARK 3 CHIRALITY : 0.094 577 REMARK 3 PLANARITY : 0.007 669 REMARK 3 DIHEDRAL : 15.848 1398 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): 55.3037 74.9121 58.4871 REMARK 3 T TENSOR REMARK 3 T11: -0.0411 T22: 0.1118 REMARK 3 T33: 0.0420 T12: -0.0143 REMARK 3 T13: -0.0179 T23: -0.0611 REMARK 3 L TENSOR REMARK 3 L11: 0.4478 L22: 0.8333 REMARK 3 L33: 0.7688 L12: -0.3305 REMARK 3 L13: 0.0817 L23: -0.0641 REMARK 3 S TENSOR REMARK 3 S11: -0.1066 S12: -0.3044 S13: 0.0930 REMARK 3 S21: 0.0814 S22: 0.1176 S23: 0.0295 REMARK 3 S31: -0.1747 S32: -0.0450 S33: -0.0335 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): 49.3198 69.0649 29.4268 REMARK 3 T TENSOR REMARK 3 T11: 0.0729 T22: -0.0408 REMARK 3 T33: 0.0322 T12: -0.0664 REMARK 3 T13: -0.0650 T23: -0.0161 REMARK 3 L TENSOR REMARK 3 L11: 0.6577 L22: 0.5922 REMARK 3 L33: 0.5350 L12: -0.3000 REMARK 3 L13: -0.0049 L23: 0.0284 REMARK 3 S TENSOR REMARK 3 S11: 0.0751 S12: 0.0234 S13: -0.0253 REMARK 3 S21: -0.2787 S22: -0.0585 S23: 0.1233 REMARK 3 S31: -0.0186 S32: -0.1590 S33: -0.0500 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN C REMARK 3 ORIGIN FOR THE GROUP (A): 68.2751 80.2424 53.9859 REMARK 3 T TENSOR REMARK 3 T11: 0.1571 T22: 0.3149 REMARK 3 T33: 0.2970 T12: 0.0940 REMARK 3 T13: -0.0260 T23: -0.1252 REMARK 3 L TENSOR REMARK 3 L11: 2.2364 L22: 8.0644 REMARK 3 L33: 2.2936 L12: -2.0100 REMARK 3 L13: 2.2235 L23: -4.5454 REMARK 3 S TENSOR REMARK 3 S11: 0.0862 S12: -0.9287 S13: -1.5289 REMARK 3 S21: -0.1307 S22: -0.1711 S23: 1.3606 REMARK 3 S31: -1.5452 S32: -2.5711 S33: 0.0920 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN D REMARK 3 ORIGIN FOR THE GROUP (A): 44.1561 55.9564 33.9526 REMARK 3 T TENSOR REMARK 3 T11: 0.5800 T22: 0.3715 REMARK 3 T33: 0.3952 T12: 0.1468 REMARK 3 T13: -0.0588 T23: 0.0051 REMARK 3 L TENSOR REMARK 3 L11: 2.0000 L22: 2.0000 REMARK 3 L33: 2.0000 L12: -5.3825 REMARK 3 L13: -6.2394 L23: 2.0000 REMARK 3 S TENSOR REMARK 3 S11: 0.5929 S12: 2.2366 S13: 2.3133 REMARK 3 S21: -4.4329 S22: 2.2497 S23: 0.2337 REMARK 3 S31: -6.0343 S32: -9.9705 S33: -2.8424 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN E REMARK 3 ORIGIN FOR THE GROUP (A): 59.0309 78.3933 65.9691 REMARK 3 T TENSOR REMARK 3 T11: 0.6194 T22: 0.6651 REMARK 3 T33: 0.5384 T12: 0.0096 REMARK 3 T13: -0.0899 T23: -0.0142 REMARK 3 L TENSOR REMARK 3 L11: 2.0000 L22: 2.0000 REMARK 3 L33: 2.0000 L12: 2.8050 REMARK 3 L13: 2.0000 L23: 2.0000 REMARK 3 S TENSOR REMARK 3 S11: -0.0933 S12: -0.4942 S13: 3.5810 REMARK 3 S21: -7.2215 S22: 0.4962 S23: 7.8391 REMARK 3 S31: -3.5186 S32: 10.7451 S33: -0.4102 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN F REMARK 3 ORIGIN FOR THE GROUP (A): 45.7093 65.1188 21.9721 REMARK 3 T TENSOR REMARK 3 T11: 0.6581 T22: 0.7298 REMARK 3 T33: 0.5963 T12: 0.0088 REMARK 3 T13: 0.0332 T23: -0.0979 REMARK 3 L TENSOR REMARK 3 L11: 2.0000 L22: 2.0000 REMARK 3 L33: 2.0000 L12: -6.1005 REMARK 3 L13: 4.0001 L23: 0.8863 REMARK 3 S TENSOR REMARK 3 S11: 0.3274 S12: -8.6712 S13: 6.8588 REMARK 3 S21: -1.1765 S22: 0.4895 S23: 1.8032 REMARK 3 S31: 9.4416 S32: -2.2757 S33: -0.8331 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN G REMARK 3 ORIGIN FOR THE GROUP (A): 50.6938 93.3687 64.6308 REMARK 3 T TENSOR REMARK 3 T11: 0.1283 T22: 0.3314 REMARK 3 T33: 0.5074 T12: 0.0775 REMARK 3 T13: -0.0311 T23: -0.0741 REMARK 3 L TENSOR REMARK 3 L11: 2.0000 L22: 2.0000 REMARK 3 L33: 2.0000 L12: 7.2798 REMARK 3 L13: 2.0000 L23: -7.6822 REMARK 3 S TENSOR REMARK 3 S11: -0.3074 S12: -0.0453 S13: 2.6135 REMARK 3 S21: -0.1114 S22: 1.2806 S23: 7.6883 REMARK 3 S31: 0.8064 S32: 5.5806 S33: -0.9642 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3GED COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-FEB-09. REMARK 100 THE DEPOSITION ID IS D_1000051755. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JAN-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979454 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC Q315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 68407 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.416 REMARK 200 RESOLUTION RANGE LOW (A) : 99.015 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : 12.00 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 18.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.69 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.74 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP, AMORE REMARK 200 STARTING MODEL: PDB ENTRIES 1YDE, 1VL8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.86 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% (W/V) PEG 4000,100MM TAPS PH 9.0, REMARK 280 50MM SODIUM THIOSULFATE PENTAHYDRATE 1:1 COCKTAIL TO PROTEIN REMARK 280 RATIO (10MG/ML), HANGING DROP VAPOR DIFFUSION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 62.14350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 62.14350 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 81.30400 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 62.14350 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 40.65200 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 62.14350 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 121.95600 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 62.14350 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 121.95600 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 62.14350 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 40.65200 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 62.14350 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 62.14350 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 81.30400 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 62.14350 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 62.14350 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 81.30400 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 62.14350 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 121.95600 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 62.14350 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 40.65200 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 62.14350 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 40.65200 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 62.14350 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 121.95600 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 62.14350 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 62.14350 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 81.30400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 22240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -193.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 124.28700 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 124.28700 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 416 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 182 REMARK 465 GLN A 183 REMARK 465 GLN A 184 REMARK 465 LYS A 247 REMARK 465 GLU B 182 REMARK 465 GLN B 183 REMARK 465 GLN B 184 REMARK 465 LYS B 247 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 185 CG CD OE1 OE2 REMARK 470 GLU B 185 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 74 -12.56 73.40 REMARK 500 LYS A 88 -157.28 -97.13 REMARK 500 LEU A 107 -48.94 -138.69 REMARK 500 ALA A 132 -128.87 -104.97 REMARK 500 ASP A 226 20.36 -142.31 REMARK 500 ASN B 2 -113.68 -100.91 REMARK 500 GLN B 74 -9.25 67.96 REMARK 500 LYS B 88 -159.21 -98.75 REMARK 500 LEU B 107 -49.94 -138.92 REMARK 500 ALA B 132 -125.52 -105.99 REMARK 500 ASP B 226 18.47 -142.85 REMARK 500 ASN B 240 3.48 81.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 251 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 43 O REMARK 620 2 ARG A 46 O 93.6 REMARK 620 3 LEU A 49 O 111.2 84.9 REMARK 620 4 HOH A 291 O 87.2 87.4 160.5 REMARK 620 5 HOH A 350 O 86.9 175.9 98.7 88.5 REMARK 620 6 HOH A 360 O 169.7 91.7 78.1 84.2 87.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 250 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA B 43 O REMARK 620 2 ARG B 46 O 92.0 REMARK 620 3 LEU B 49 O 111.0 86.3 REMARK 620 4 HOH B 441 O 87.1 174.5 99.1 REMARK 620 5 HOH B 472 O 166.6 95.9 80.4 84.0 REMARK 620 6 HOH B 497 O 86.5 87.4 161.6 87.1 83.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 248 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE THJ A 249 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE THJ A 250 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 251 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 248 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE THJ B 249 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 250 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3GEG RELATED DB: PDB REMARK 900 FINGERPRINT AND STRUCTURAL ANALYSIS OF A CARBOHYDRATE SPECIFIC SCOR REMARK 900 ENZYME FROM CLOSTRIDIUM THERMOCELLUM DBREF 3GED A 1 247 UNP A3DFK9 A3DFK9_CLOTH 1 247 DBREF 3GED B 1 247 UNP A3DFK9 A3DFK9_CLOTH 1 247 SEQRES 1 A 247 MET ASN ARG GLY VAL ILE VAL THR GLY GLY GLY HIS GLY SEQRES 2 A 247 ILE GLY LYS GLN ILE CYS LEU ASP PHE LEU GLU ALA GLY SEQRES 3 A 247 ASP LYS VAL CYS PHE ILE ASP ILE ASP GLU LYS ARG SER SEQRES 4 A 247 ALA ASP PHE ALA LYS GLU ARG PRO ASN LEU PHE TYR PHE SEQRES 5 A 247 HIS GLY ASP VAL ALA ASP PRO LEU THR LEU LYS LYS PHE SEQRES 6 A 247 VAL GLU TYR ALA MET GLU LYS LEU GLN ARG ILE ASP VAL SEQRES 7 A 247 LEU VAL ASN ASN ALA CYS ARG GLY SER LYS GLY ILE LEU SEQRES 8 A 247 SER SER LEU LEU TYR GLU GLU PHE ASP TYR ILE LEU SER SEQRES 9 A 247 VAL GLY LEU LYS ALA PRO TYR GLU LEU SER ARG LEU CYS SEQRES 10 A 247 ARG ASP GLU LEU ILE LYS ASN LYS GLY ARG ILE ILE ASN SEQRES 11 A 247 ILE ALA SER THR ARG ALA PHE GLN SER GLU PRO ASP SER SEQRES 12 A 247 GLU ALA TYR ALA SER ALA LYS GLY GLY ILE VAL ALA LEU SEQRES 13 A 247 THR HIS ALA LEU ALA MET SER LEU GLY PRO ASP VAL LEU SEQRES 14 A 247 VAL ASN CYS ILE ALA PRO GLY TRP ILE ASN VAL THR GLU SEQRES 15 A 247 GLN GLN GLU PHE THR GLN GLU ASP CYS ALA ALA ILE PRO SEQRES 16 A 247 ALA GLY LYS VAL GLY THR PRO LYS ASP ILE SER ASN MET SEQRES 17 A 247 VAL LEU PHE LEU CYS GLN GLN ASP PHE ILE THR GLY GLU SEQRES 18 A 247 THR ILE ILE VAL ASP GLY GLY MET SER LYS ARG MET ILE SEQRES 19 A 247 TYR HIS GLY ASP TRP ASN TRP PHE TYR LYS ILE ASP LYS SEQRES 1 B 247 MET ASN ARG GLY VAL ILE VAL THR GLY GLY GLY HIS GLY SEQRES 2 B 247 ILE GLY LYS GLN ILE CYS LEU ASP PHE LEU GLU ALA GLY SEQRES 3 B 247 ASP LYS VAL CYS PHE ILE ASP ILE ASP GLU LYS ARG SER SEQRES 4 B 247 ALA ASP PHE ALA LYS GLU ARG PRO ASN LEU PHE TYR PHE SEQRES 5 B 247 HIS GLY ASP VAL ALA ASP PRO LEU THR LEU LYS LYS PHE SEQRES 6 B 247 VAL GLU TYR ALA MET GLU LYS LEU GLN ARG ILE ASP VAL SEQRES 7 B 247 LEU VAL ASN ASN ALA CYS ARG GLY SER LYS GLY ILE LEU SEQRES 8 B 247 SER SER LEU LEU TYR GLU GLU PHE ASP TYR ILE LEU SER SEQRES 9 B 247 VAL GLY LEU LYS ALA PRO TYR GLU LEU SER ARG LEU CYS SEQRES 10 B 247 ARG ASP GLU LEU ILE LYS ASN LYS GLY ARG ILE ILE ASN SEQRES 11 B 247 ILE ALA SER THR ARG ALA PHE GLN SER GLU PRO ASP SER SEQRES 12 B 247 GLU ALA TYR ALA SER ALA LYS GLY GLY ILE VAL ALA LEU SEQRES 13 B 247 THR HIS ALA LEU ALA MET SER LEU GLY PRO ASP VAL LEU SEQRES 14 B 247 VAL ASN CYS ILE ALA PRO GLY TRP ILE ASN VAL THR GLU SEQRES 15 B 247 GLN GLN GLU PHE THR GLN GLU ASP CYS ALA ALA ILE PRO SEQRES 16 B 247 ALA GLY LYS VAL GLY THR PRO LYS ASP ILE SER ASN MET SEQRES 17 B 247 VAL LEU PHE LEU CYS GLN GLN ASP PHE ILE THR GLY GLU SEQRES 18 B 247 THR ILE ILE VAL ASP GLY GLY MET SER LYS ARG MET ILE SEQRES 19 B 247 TYR HIS GLY ASP TRP ASN TRP PHE TYR LYS ILE ASP LYS HET GOL A 248 6 HET THJ A 249 5 HET THJ A 250 5 HET NA A 251 1 HET GOL B 248 6 HET THJ B 249 5 HET NA B 250 1 HETNAM GOL GLYCEROL HETNAM THJ THIOSULFATE HETNAM NA SODIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 2(C3 H8 O3) FORMUL 4 THJ 3(O3 S2 2-) FORMUL 6 NA 2(NA 1+) FORMUL 10 HOH *551(H2 O) HELIX 1 1 HIS A 12 ALA A 25 1 14 HELIX 2 2 ASP A 35 LYS A 44 1 10 HELIX 3 3 ASP A 58 GLN A 74 1 17 HELIX 4 4 GLY A 89 SER A 93 5 5 HELIX 5 5 LEU A 95 LEU A 107 1 13 HELIX 6 6 LEU A 107 ASN A 124 1 18 HELIX 7 7 SER A 133 PHE A 137 5 5 HELIX 8 8 SER A 143 GLY A 165 1 23 HELIX 9 9 THR A 187 ALA A 193 1 7 HELIX 10 10 THR A 201 GLN A 215 1 15 HELIX 11 11 GLY A 228 ARG A 232 5 5 HELIX 12 12 HIS B 12 ALA B 25 1 14 HELIX 13 13 ASP B 35 LYS B 44 1 10 HELIX 14 14 ASP B 58 GLN B 74 1 17 HELIX 15 15 GLY B 89 SER B 93 5 5 HELIX 16 16 LEU B 95 LEU B 107 1 13 HELIX 17 17 LEU B 107 CYS B 117 1 11 HELIX 18 18 CYS B 117 LYS B 125 1 9 HELIX 19 19 SER B 133 PHE B 137 5 5 HELIX 20 20 SER B 143 GLY B 165 1 23 HELIX 21 21 THR B 187 ALA B 193 1 7 HELIX 22 22 THR B 201 GLN B 214 1 14 HELIX 23 23 GLY B 228 ARG B 232 5 5 SHEET 1 A 7 LEU A 49 HIS A 53 0 SHEET 2 A 7 LYS A 28 ASP A 33 1 N VAL A 29 O PHE A 50 SHEET 3 A 7 GLY A 4 THR A 8 1 N VAL A 5 O CYS A 30 SHEET 4 A 7 VAL A 78 ASN A 81 1 O VAL A 80 N ILE A 6 SHEET 5 A 7 ARG A 127 ILE A 131 1 O ILE A 131 N ASN A 81 SHEET 6 A 7 LEU A 169 PRO A 175 1 O ASN A 171 N ASN A 130 SHEET 7 A 7 THR A 222 VAL A 225 1 O ILE A 223 N ALA A 174 SHEET 1 B 7 LEU B 49 HIS B 53 0 SHEET 2 B 7 LYS B 28 ASP B 33 1 N VAL B 29 O PHE B 50 SHEET 3 B 7 GLY B 4 THR B 8 1 N VAL B 5 O LYS B 28 SHEET 4 B 7 VAL B 78 ASN B 81 1 O VAL B 78 N ILE B 6 SHEET 5 B 7 ARG B 127 ILE B 131 1 O ILE B 131 N ASN B 81 SHEET 6 B 7 LEU B 169 PRO B 175 1 O ASN B 171 N ASN B 130 SHEET 7 B 7 THR B 222 VAL B 225 1 O ILE B 223 N ALA B 174 LINK O ALA A 43 NA NA A 251 1555 1555 2.49 LINK O ARG A 46 NA NA A 251 1555 1555 2.48 LINK O LEU A 49 NA NA A 251 1555 1555 2.42 LINK NA NA A 251 O HOH A 291 1555 1555 2.85 LINK NA NA A 251 O HOH A 350 1555 1555 2.52 LINK NA NA A 251 O HOH A 360 1555 1555 2.74 LINK O ALA B 43 NA NA B 250 1555 1555 2.48 LINK O ARG B 46 NA NA B 250 1555 1555 2.47 LINK O LEU B 49 NA NA B 250 1555 1555 2.35 LINK NA NA B 250 O HOH B 441 1555 1555 2.54 LINK NA NA B 250 O HOH B 472 1555 1555 2.65 LINK NA NA B 250 O HOH B 497 1555 1555 2.92 CISPEP 1 GLY A 165 PRO A 166 0 1.70 CISPEP 2 GLY B 165 PRO B 166 0 5.89 SITE 1 AC1 7 ARG A 135 TRP A 177 HOH A 292 HOH A 329 SITE 2 AC1 7 HOH A 356 HOH A 417 ASP B 238 SITE 1 AC2 7 GLY A 9 HIS A 12 ILE A 34 CYS A 84 SITE 2 AC2 7 ARG A 85 HOH A 254 HOH A 437 SITE 1 AC3 8 LYS A 16 ASP A 41 ARG A 46 HOH A 287 SITE 2 AC3 8 LYS B 16 ASP B 41 ARG B 46 HOH B 326 SITE 1 AC4 6 ALA A 43 ARG A 46 LEU A 49 HOH A 291 SITE 2 AC4 6 HOH A 350 HOH A 360 SITE 1 AC5 6 ASP A 238 ARG B 135 TRP B 177 HOH B 251 SITE 2 AC5 6 HOH B 359 HOH B 377 SITE 1 AC6 6 GLY B 9 HIS B 12 CYS B 84 ARG B 85 SITE 2 AC6 6 HOH B 352 HOH B 467 SITE 1 AC7 6 ALA B 43 ARG B 46 LEU B 49 HOH B 441 SITE 2 AC7 6 HOH B 472 HOH B 497 CRYST1 124.287 124.287 162.608 90.00 90.00 90.00 I 41 2 2 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008046 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008046 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006150 0.00000