HEADER OXIDOREDUCTASE 25-FEB-09 3GEG TITLE FINGERPRINT AND STRUCTURAL ANALYSIS OF A SCOR ENZYME WITH ITS BOUND TITLE 2 COFACTOR FROM CLOSTRIDIUM THERMOCELLUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: SHORT-CHAIN DEHYDROGENASE/REDUCTASE SDR; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM THERMOCELLUM ATCC 27405; SOURCE 3 ORGANISM_TAXID: 203119; SOURCE 4 STRAIN: STRAIN ATCC 27405 / DSM 1237; SOURCE 5 GENE: CTHE_1510; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PETSUMO KEYWDS SDR, SCOR, ROSSMANN FOLD, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR R.HUETHER,Z.J.LIU,H.XU,B.C.WANG,V.PLETNEV,Q.MAO,T.UMLAND,W.DUAX REVDAT 6 06-SEP-23 3GEG 1 REMARK LINK REVDAT 5 01-NOV-17 3GEG 1 REMARK REVDAT 4 13-JUL-11 3GEG 1 VERSN REVDAT 3 02-MAR-10 3GEG 1 JRNL REVDAT 2 07-APR-09 3GEG 1 HETNAM REVDAT 1 17-MAR-09 3GEG 0 SPRSDE 17-MAR-09 3GEG 3DIJ JRNL AUTH R.HUETHER,Z.J.LIU,H.XU,B.C.WANG,V.Z.PLETNEV,Q.MAO,W.L.DUAX, JRNL AUTH 2 T.C.UMLAND JRNL TITL SEQUENCE FINGERPRINT AND STRUCTURAL ANALYSIS OF THE SCOR JRNL TITL 2 ENZYME A3DFK9 FROM CLOSTRIDIUM THERMOCELLUM. JRNL REF PROTEINS V. 78 603 2010 JRNL REFN ISSN 0887-3585 JRNL PMID 19774618 JRNL DOI 10.1002/PROT.22584 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.94 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 36874 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 1841 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.9460 - 4.9390 0.97 2807 147 0.1850 0.1970 REMARK 3 2 4.9390 - 3.9210 1.00 2756 145 0.1400 0.1680 REMARK 3 3 3.9210 - 3.4260 1.00 2716 140 0.1470 0.1640 REMARK 3 4 3.4260 - 3.1130 1.00 2717 133 0.1670 0.1740 REMARK 3 5 3.1130 - 2.8900 1.00 2691 137 0.1810 0.2300 REMARK 3 6 2.8900 - 2.7190 1.00 2666 169 0.1820 0.2200 REMARK 3 7 2.7190 - 2.5830 1.00 2696 133 0.1700 0.2310 REMARK 3 8 2.5830 - 2.4710 1.00 2675 131 0.1640 0.2000 REMARK 3 9 2.4710 - 2.3760 1.00 2658 145 0.1570 0.2100 REMARK 3 10 2.3760 - 2.2940 1.00 2657 146 0.1630 0.2020 REMARK 3 11 2.2940 - 2.2220 1.00 2671 140 0.1710 0.2400 REMARK 3 12 2.2220 - 2.1580 1.00 2693 122 0.1860 0.2280 REMARK 3 13 2.1580 - 2.1020 1.00 2630 153 0.1860 0.2300 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.37 REMARK 3 B_SOL : 56.10 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.32 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.83600 REMARK 3 B22 (A**2) : -0.83600 REMARK 3 B33 (A**2) : 1.63600 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 3946 REMARK 3 ANGLE : 1.330 5345 REMARK 3 CHIRALITY : 0.507 591 REMARK 3 PLANARITY : 0.004 675 REMARK 3 DIHEDRAL : 17.754 1519 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): 55.2742 74.8949 58.2570 REMARK 3 T TENSOR REMARK 3 T11: 0.0293 T22: 0.2227 REMARK 3 T33: 0.0756 T12: -0.0204 REMARK 3 T13: 0.0012 T23: -0.0706 REMARK 3 L TENSOR REMARK 3 L11: 0.2705 L22: 0.8485 REMARK 3 L33: 0.5321 L12: -0.2815 REMARK 3 L13: -0.1230 L23: 0.0800 REMARK 3 S TENSOR REMARK 3 S11: -0.0602 S12: -0.3083 S13: 0.1111 REMARK 3 S21: 0.0893 S22: 0.0618 S23: 0.0918 REMARK 3 S31: -0.1021 S32: -0.0461 S33: 0.0038 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): 49.3762 69.0173 29.2747 REMARK 3 T TENSOR REMARK 3 T11: 0.1372 T22: 0.0289 REMARK 3 T33: 0.0419 T12: -0.0311 REMARK 3 T13: -0.0705 T23: -0.0180 REMARK 3 L TENSOR REMARK 3 L11: 0.5581 L22: 0.7614 REMARK 3 L33: 0.4245 L12: -0.3202 REMARK 3 L13: 0.0688 L23: -0.1774 REMARK 3 S TENSOR REMARK 3 S11: 0.0433 S12: -0.0193 S13: 0.0144 REMARK 3 S21: -0.3335 S22: -0.0522 S23: 0.1273 REMARK 3 S31: 0.0247 S32: -0.0744 S33: -0.0417 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN C REMARK 3 ORIGIN FOR THE GROUP (A): 59.3912 79.1959 62.0830 REMARK 3 T TENSOR REMARK 3 T11: 0.5701 T22: 0.7146 REMARK 3 T33: 0.4770 T12: -0.2486 REMARK 3 T13: 0.0481 T23: -0.1057 REMARK 3 L TENSOR REMARK 3 L11: 0.6369 L22: 0.1259 REMARK 3 L33: -0.0684 L12: 0.3449 REMARK 3 L13: 0.1049 L23: -0.0828 REMARK 3 S TENSOR REMARK 3 S11: -0.0705 S12: -0.1582 S13: 0.0147 REMARK 3 S21: -0.0132 S22: -0.0484 S23: -0.0017 REMARK 3 S31: 0.0769 S32: -0.1868 S33: 0.0497 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN D REMARK 3 ORIGIN FOR THE GROUP (A): 45.1494 64.8635 25.4017 REMARK 3 T TENSOR REMARK 3 T11: 0.9135 T22: 0.6239 REMARK 3 T33: 0.5448 T12: -0.2250 REMARK 3 T13: -0.3219 T23: 0.0805 REMARK 3 L TENSOR REMARK 3 L11: -0.0586 L22: -0.6244 REMARK 3 L33: 0.1176 L12: -0.1470 REMARK 3 L13: 0.0177 L23: 0.1157 REMARK 3 S TENSOR REMARK 3 S11: -0.0297 S12: -0.0023 S13: -0.0123 REMARK 3 S21: -0.2073 S22: -0.0742 S23: -0.0124 REMARK 3 S31: -0.0701 S32: 0.0160 S33: 0.0507 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN E REMARK 3 ORIGIN FOR THE GROUP (A): 68.1380 79.0453 53.5755 REMARK 3 T TENSOR REMARK 3 T11: 0.3712 T22: 0.5458 REMARK 3 T33: 0.4153 T12: -0.0685 REMARK 3 T13: -0.0200 T23: -0.1173 REMARK 3 L TENSOR REMARK 3 L11: 2.0000 L22: 7.2770 REMARK 3 L33: 9.4519 L12: -4.4442 REMARK 3 L13: 7.1472 L23: 8.4122 REMARK 3 S TENSOR REMARK 3 S11: 0.1107 S12: -0.4470 S13: -0.1153 REMARK 3 S21: 0.5654 S22: -0.0357 S23: -1.5341 REMARK 3 S31: 0.1339 S32: 0.2791 S33: -0.0854 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN F REMARK 3 ORIGIN FOR THE GROUP (A): 45.3659 56.2054 34.0075 REMARK 3 T TENSOR REMARK 3 T11: 0.3840 T22: 0.3262 REMARK 3 T33: 0.6195 T12: -0.0789 REMARK 3 T13: -0.0038 T23: -0.0614 REMARK 3 L TENSOR REMARK 3 L11: 2.1352 L22: 2.1652 REMARK 3 L33: 2.1779 L12: 5.8211 REMARK 3 L13: 2.3089 L23: 4.8746 REMARK 3 S TENSOR REMARK 3 S11: 0.0592 S12: 0.2545 S13: -1.5079 REMARK 3 S21: 0.3336 S22: -0.0015 S23: -1.3410 REMARK 3 S31: 0.1211 S32: 0.0075 S33: -0.0677 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN G REMARK 3 ORIGIN FOR THE GROUP (A): 50.6251 93.3077 64.2820 REMARK 3 T TENSOR REMARK 3 T11: 0.2048 T22: 0.2852 REMARK 3 T33: 0.8089 T12: 0.0219 REMARK 3 T13: 0.0467 T23: -0.1838 REMARK 3 L TENSOR REMARK 3 L11: 2.0000 L22: 2.0000 REMARK 3 L33: 2.0000 L12: 5.5107 REMARK 3 L13: 2.0000 L23: -9.1519 REMARK 3 S TENSOR REMARK 3 S11: -0.8981 S12: 1.1805 S13: 1.6046 REMARK 3 S21: -0.3854 S22: 0.5811 S23: 4.4218 REMARK 3 S31: 0.9330 S32: 2.8351 S33: 0.3242 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3GEG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-FEB-09. REMARK 100 THE DEPOSITION ID IS D_1000051758. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JAN-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979454 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC Q315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36901 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 11.00 REMARK 200 R MERGE (I) : 0.07800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 17.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.00 REMARK 200 R MERGE FOR SHELL (I) : 0.31700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 3GED REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% (W/V) PEG 4000,100MM TAPS PH9.0, REMARK 280 50MM SODIUM THIOSULFATE PENTAHYDRATE 1:1 COCKTAIL TO PROTEIN REMARK 280 RATIO (10MG/ML), HANGING DROP VAPOR DIFFUSION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 62.13600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 62.13600 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 80.60400 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 62.13600 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 40.30200 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 62.13600 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 120.90600 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 62.13600 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 120.90600 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 62.13600 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 40.30200 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 62.13600 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 62.13600 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 80.60400 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 62.13600 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 62.13600 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 80.60400 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 62.13600 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 120.90600 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 62.13600 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 40.30200 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 62.13600 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 40.30200 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 62.13600 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 120.90600 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 62.13600 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 62.13600 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 80.60400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 26090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -213.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 124.27200 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 124.27200 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 378 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 384 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 369 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 182 REMARK 465 GLN A 183 REMARK 465 GLN A 184 REMARK 465 GLU A 185 REMARK 465 LYS A 247 REMARK 465 MET B 1 REMARK 465 GLU B 182 REMARK 465 GLN B 183 REMARK 465 GLN B 184 REMARK 465 GLU B 185 REMARK 465 LYS B 247 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 74 -2.92 68.73 REMARK 500 LYS A 88 -151.06 -106.25 REMARK 500 LEU A 107 -49.56 -133.39 REMARK 500 ALA A 132 -123.42 -103.41 REMARK 500 ASN A 240 0.47 80.55 REMARK 500 GLN B 74 -5.52 71.02 REMARK 500 CYS B 84 143.75 178.98 REMARK 500 SER B 87 -157.67 -153.60 REMARK 500 LYS B 88 -150.46 -104.34 REMARK 500 LEU B 107 -48.41 -131.76 REMARK 500 ALA B 132 -124.41 -104.98 REMARK 500 ASP B 226 22.62 -140.56 REMARK 500 ASN B 240 -1.40 82.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 251 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 43 O REMARK 620 2 LEU A 49 O 99.4 REMARK 620 3 HOH A 382 O 152.7 74.0 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 250 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA B 43 O REMARK 620 2 ARG B 46 O 85.5 REMARK 620 3 LEU B 49 O 103.8 81.6 REMARK 620 4 HOH B 372 O 175.4 94.0 80.6 REMARK 620 5 HOH B 384 O 99.5 174.9 95.7 81.3 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD A 248 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 249 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE THJ A 250 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 251 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD B 248 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 249 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 250 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3GED RELATED DB: PDB REMARK 900 FINGERPRINT AND STRUCTURAL ANALYSIS OF A CARBOHYDRATE SPECIFIC SCOR REMARK 900 ENZYME FROM CLOSTRIDIUM THERMOCELLUM. DBREF 3GEG A 1 247 UNP A3DFK9 A3DFK9_CLOTH 1 247 DBREF 3GEG B 1 247 UNP A3DFK9 A3DFK9_CLOTH 1 247 SEQRES 1 A 247 MET ASN ARG GLY VAL ILE VAL THR GLY GLY GLY HIS GLY SEQRES 2 A 247 ILE GLY LYS GLN ILE CYS LEU ASP PHE LEU GLU ALA GLY SEQRES 3 A 247 ASP LYS VAL CYS PHE ILE ASP ILE ASP GLU LYS ARG SER SEQRES 4 A 247 ALA ASP PHE ALA LYS GLU ARG PRO ASN LEU PHE TYR PHE SEQRES 5 A 247 HIS GLY ASP VAL ALA ASP PRO LEU THR LEU LYS LYS PHE SEQRES 6 A 247 VAL GLU TYR ALA MET GLU LYS LEU GLN ARG ILE ASP VAL SEQRES 7 A 247 LEU VAL ASN ASN ALA CYS ARG GLY SER LYS GLY ILE LEU SEQRES 8 A 247 SER SER LEU LEU TYR GLU GLU PHE ASP TYR ILE LEU SER SEQRES 9 A 247 VAL GLY LEU LYS ALA PRO TYR GLU LEU SER ARG LEU CYS SEQRES 10 A 247 ARG ASP GLU LEU ILE LYS ASN LYS GLY ARG ILE ILE ASN SEQRES 11 A 247 ILE ALA SER THR ARG ALA PHE GLN SER GLU PRO ASP SER SEQRES 12 A 247 GLU ALA TYR ALA SER ALA LYS GLY GLY ILE VAL ALA LEU SEQRES 13 A 247 THR HIS ALA LEU ALA MET SER LEU GLY PRO ASP VAL LEU SEQRES 14 A 247 VAL ASN CYS ILE ALA PRO GLY TRP ILE ASN VAL THR GLU SEQRES 15 A 247 GLN GLN GLU PHE THR GLN GLU ASP CYS ALA ALA ILE PRO SEQRES 16 A 247 ALA GLY LYS VAL GLY THR PRO LYS ASP ILE SER ASN MET SEQRES 17 A 247 VAL LEU PHE LEU CYS GLN GLN ASP PHE ILE THR GLY GLU SEQRES 18 A 247 THR ILE ILE VAL ASP GLY GLY MET SER LYS ARG MET ILE SEQRES 19 A 247 TYR HIS GLY ASP TRP ASN TRP PHE TYR LYS ILE ASP LYS SEQRES 1 B 247 MET ASN ARG GLY VAL ILE VAL THR GLY GLY GLY HIS GLY SEQRES 2 B 247 ILE GLY LYS GLN ILE CYS LEU ASP PHE LEU GLU ALA GLY SEQRES 3 B 247 ASP LYS VAL CYS PHE ILE ASP ILE ASP GLU LYS ARG SER SEQRES 4 B 247 ALA ASP PHE ALA LYS GLU ARG PRO ASN LEU PHE TYR PHE SEQRES 5 B 247 HIS GLY ASP VAL ALA ASP PRO LEU THR LEU LYS LYS PHE SEQRES 6 B 247 VAL GLU TYR ALA MET GLU LYS LEU GLN ARG ILE ASP VAL SEQRES 7 B 247 LEU VAL ASN ASN ALA CYS ARG GLY SER LYS GLY ILE LEU SEQRES 8 B 247 SER SER LEU LEU TYR GLU GLU PHE ASP TYR ILE LEU SER SEQRES 9 B 247 VAL GLY LEU LYS ALA PRO TYR GLU LEU SER ARG LEU CYS SEQRES 10 B 247 ARG ASP GLU LEU ILE LYS ASN LYS GLY ARG ILE ILE ASN SEQRES 11 B 247 ILE ALA SER THR ARG ALA PHE GLN SER GLU PRO ASP SER SEQRES 12 B 247 GLU ALA TYR ALA SER ALA LYS GLY GLY ILE VAL ALA LEU SEQRES 13 B 247 THR HIS ALA LEU ALA MET SER LEU GLY PRO ASP VAL LEU SEQRES 14 B 247 VAL ASN CYS ILE ALA PRO GLY TRP ILE ASN VAL THR GLU SEQRES 15 B 247 GLN GLN GLU PHE THR GLN GLU ASP CYS ALA ALA ILE PRO SEQRES 16 B 247 ALA GLY LYS VAL GLY THR PRO LYS ASP ILE SER ASN MET SEQRES 17 B 247 VAL LEU PHE LEU CYS GLN GLN ASP PHE ILE THR GLY GLU SEQRES 18 B 247 THR ILE ILE VAL ASP GLY GLY MET SER LYS ARG MET ILE SEQRES 19 B 247 TYR HIS GLY ASP TRP ASN TRP PHE TYR LYS ILE ASP LYS HET NAD A 248 44 HET GOL A 249 6 HET THJ A 250 5 HET NA A 251 1 HET NAD B 248 44 HET GOL B 249 6 HET NA B 250 1 HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM GOL GLYCEROL HETNAM THJ THIOSULFATE HETNAM NA SODIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 NAD 2(C21 H27 N7 O14 P2) FORMUL 4 GOL 2(C3 H8 O3) FORMUL 5 THJ O3 S2 2- FORMUL 6 NA 2(NA 1+) FORMUL 10 HOH *293(H2 O) HELIX 1 1 HIS A 12 ALA A 25 1 14 HELIX 2 2 ASP A 35 LYS A 44 1 10 HELIX 3 3 ASP A 58 GLN A 74 1 17 HELIX 4 4 GLY A 89 SER A 93 5 5 HELIX 5 5 LEU A 95 LEU A 107 1 13 HELIX 6 6 LEU A 107 CYS A 117 1 11 HELIX 7 7 CYS A 117 ASN A 124 1 8 HELIX 8 8 SER A 133 PHE A 137 5 5 HELIX 9 9 SER A 143 GLY A 165 1 23 HELIX 10 10 THR A 187 ALA A 193 1 7 HELIX 11 11 THR A 201 GLN A 215 1 15 HELIX 12 12 GLY A 228 ARG A 232 5 5 HELIX 13 13 HIS B 12 ALA B 25 1 14 HELIX 14 14 ASP B 35 LYS B 44 1 10 HELIX 15 15 ASP B 58 GLN B 74 1 17 HELIX 16 16 LEU B 95 LEU B 107 1 13 HELIX 17 17 LEU B 107 CYS B 117 1 11 HELIX 18 18 CYS B 117 ASN B 124 1 8 HELIX 19 19 SER B 133 PHE B 137 5 5 HELIX 20 20 SER B 143 GLY B 165 1 23 HELIX 21 21 THR B 187 ALA B 193 1 7 HELIX 22 22 THR B 201 GLN B 215 1 15 HELIX 23 23 GLY B 228 ARG B 232 5 5 SHEET 1 A 7 LEU A 49 HIS A 53 0 SHEET 2 A 7 LYS A 28 ASP A 33 1 N VAL A 29 O PHE A 50 SHEET 3 A 7 GLY A 4 THR A 8 1 N VAL A 5 O CYS A 30 SHEET 4 A 7 VAL A 78 ASN A 81 1 O VAL A 80 N ILE A 6 SHEET 5 A 7 ARG A 127 ILE A 131 1 O ILE A 131 N ASN A 81 SHEET 6 A 7 LEU A 169 PRO A 175 1 O ASN A 171 N ASN A 130 SHEET 7 A 7 THR A 222 VAL A 225 1 O ILE A 223 N ALA A 174 SHEET 1 B 7 LEU B 49 HIS B 53 0 SHEET 2 B 7 LYS B 28 ASP B 33 1 N VAL B 29 O PHE B 50 SHEET 3 B 7 GLY B 4 THR B 8 1 N VAL B 5 O CYS B 30 SHEET 4 B 7 VAL B 78 ASN B 81 1 O VAL B 80 N ILE B 6 SHEET 5 B 7 ARG B 127 ILE B 131 1 O ILE B 131 N ASN B 81 SHEET 6 B 7 LEU B 169 PRO B 175 1 O ASN B 171 N ASN B 130 SHEET 7 B 7 THR B 222 VAL B 225 1 O ILE B 223 N ALA B 174 LINK O ALA A 43 NA NA A 251 1555 1555 2.78 LINK O LEU A 49 NA NA A 251 1555 1555 2.77 LINK NA NA A 251 O HOH A 382 1555 1555 2.94 LINK O ALA B 43 NA NA B 250 1555 1555 2.69 LINK O ARG B 46 NA NA B 250 1555 1555 2.76 LINK O LEU B 49 NA NA B 250 1555 1555 2.70 LINK NA NA B 250 O HOH B 372 1555 1555 2.84 LINK NA NA B 250 O HOH B 384 1555 1555 2.86 CISPEP 1 GLY A 165 PRO A 166 0 2.76 CISPEP 2 GLY B 165 PRO B 166 0 3.79 SITE 1 AC1 27 GLY A 9 HIS A 12 ILE A 14 ASP A 33 SITE 2 AC1 27 ILE A 34 ARG A 38 GLY A 54 ASP A 55 SITE 3 AC1 27 VAL A 56 ASN A 82 CYS A 84 ARG A 85 SITE 4 AC1 27 TYR A 101 VAL A 105 ILE A 131 ALA A 132 SITE 5 AC1 27 SER A 133 TYR A 146 LYS A 150 PRO A 175 SITE 6 AC1 27 GLY A 176 ILE A 178 VAL A 180 HOH A 287 SITE 7 AC1 27 HOH A 291 HOH A 362 HOH A 381 SITE 1 AC2 2 ARG A 135 HOH A 362 SITE 1 AC3 9 LYS A 16 ASP A 41 ARG A 46 HOH A 347 SITE 2 AC3 9 LYS B 16 ASP B 41 ARG B 46 HOH B 254 SITE 3 AC3 9 HOH B 370 SITE 1 AC4 5 ALA A 43 ARG A 46 LEU A 49 HOH A 358 SITE 2 AC4 5 HOH A 382 SITE 1 AC5 25 GLY B 9 HIS B 12 ILE B 14 ASP B 33 SITE 2 AC5 25 ILE B 34 GLY B 54 ASP B 55 VAL B 56 SITE 3 AC5 25 ASN B 82 CYS B 84 ARG B 85 TYR B 101 SITE 4 AC5 25 VAL B 105 ILE B 131 ALA B 132 SER B 133 SITE 5 AC5 25 TYR B 146 LYS B 150 PRO B 175 GLY B 176 SITE 6 AC5 25 ILE B 178 VAL B 180 HOH B 275 HOH B 276 SITE 7 AC5 25 HOH B 313 SITE 1 AC6 2 ARG B 135 HOH B 313 SITE 1 AC7 6 ALA B 43 ARG B 46 LEU B 49 HOH B 362 SITE 2 AC7 6 HOH B 372 HOH B 384 CRYST1 124.272 124.272 161.208 90.00 90.00 90.00 I 41 2 2 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008047 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008047 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006203 0.00000