HEADER HYDROLASE 25-FEB-09 3GEH TITLE CRYSTAL STRUCTURE OF MNME FROM NOSTOC IN COMPLEX WITH GDP, FOLINIC TITLE 2 ACID AND ZN COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRNA MODIFICATION GTPASE MNME; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MNME; COMPND 5 EC: 3.6.-.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NOSTOC SP. PCC; SOURCE 3 ORGANISM_TAXID: 103690; SOURCE 4 STRAIN: 7120; SOURCE 5 GENE: MNME, TRME, ALL4677; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET14B-NOMNME KEYWDS G PROTEIN, GTPASE, TRNA MODIFICATION, U34, GTP-BINDING, HYDROLASE, KEYWDS 2 MAGNESIUM, METAL-BINDING, NUCLEOTIDE-BINDING, POTASSIUM, TRNA KEYWDS 3 PROCESSING EXPDTA X-RAY DIFFRACTION AUTHOR S.MEYER,A.WITTINGHOFER REVDAT 3 01-NOV-23 3GEH 1 REMARK SEQADV REVDAT 2 13-JUL-11 3GEH 1 VERSN REVDAT 1 27-OCT-09 3GEH 0 JRNL AUTH S.MEYER,S.BOHME,A.KRUGER,H.-J.STEINHOFF,J.P.KLARE, JRNL AUTH 2 A.WITTINGHOFER JRNL TITL KISSING G DOMAINS OF MNME MONITORED BY X-RAY CRYSTALLOGRAPHY JRNL TITL 2 AND PULSE ELECTRON PARAMAGNETIC RESONANCE SPECTROSCOPY JRNL REF PLOS BIOL. V. 7 00212 2009 JRNL REFN ISSN 1544-9173 JRNL PMID 19806182 JRNL DOI 10.1371/JOURNAL.PBIO.1000212 REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.99 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 21913 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.242 REMARK 3 R VALUE (WORKING SET) : 0.241 REMARK 3 FREE R VALUE : 0.267 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1186 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.28 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1568 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.82 REMARK 3 BIN R VALUE (WORKING SET) : 0.3390 REMARK 3 BIN FREE R VALUE SET COUNT : 71 REMARK 3 BIN FREE R VALUE : 0.3480 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3364 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 64 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 76.55 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.54 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.09000 REMARK 3 B22 (A**2) : 1.09000 REMARK 3 B33 (A**2) : -2.18000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.507 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.345 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.308 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 38.786 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.927 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.907 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3473 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4727 ; 1.185 ; 1.991 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 440 ; 5.696 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 147 ;40.203 ;25.306 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 599 ;20.574 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;16.015 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 572 ; 0.082 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2564 ; 0.002 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1553 ; 0.203 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2419 ; 0.295 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 83 ; 0.114 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 99 ; 0.170 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 2 ; 0.071 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2256 ; 0.388 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3549 ; 0.704 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1351 ; 0.493 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1178 ; 0.919 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3GEH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-FEB-09. REMARK 100 THE DEPOSITION ID IS D_1000051759. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-AUG-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.28186 REMARK 200 MONOCHROMATOR : SAGITALLY - HORIZONTALLY FOCUSED REMARK 200 SI(111) MONOCHROMATOR REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23100 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.200 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 7.800 REMARK 200 R MERGE (I) : 0.12700 REMARK 200 R SYM (I) : 0.17800 REMARK 200 FOR THE DATA SET : 8.6100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.30 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 8.03 REMARK 200 R MERGE FOR SHELL (I) : 0.48500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.180 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1XZP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 81.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 6.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM TRIS-HCL, PH 7.5, 22% (W/V) PEG REMARK 280 550 MME, 10MM ZNSO4, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 87.35050 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 62.13950 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 62.13950 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 131.02575 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 62.13950 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 62.13950 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 43.67525 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 62.13950 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 62.13950 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 131.02575 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 62.13950 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 62.13950 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 43.67525 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 87.35050 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9800 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 38120 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -171.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 87.35050 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 276 REMARK 465 ALA A 277 REMARK 465 GLY A 278 REMARK 465 ILE A 279 REMARK 465 ARG A 280 REMARK 465 GLU A 281 REMARK 465 THR A 282 REMARK 465 SER A 283 REMARK 465 ASP A 284 REMARK 465 GLN A 285 REMARK 465 VAL A 286 REMARK 465 GLU A 287 REMARK 465 LYS A 288 REMARK 465 ILE A 289 REMARK 465 GLY A 290 REMARK 465 VAL A 291 REMARK 465 GLU A 292 REMARK 465 ARG A 293 REMARK 465 SER A 294 REMARK 465 ARG A 295 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A -1 113.47 67.34 REMARK 500 HIS A 0 -133.07 -81.55 REMARK 500 LYS A 44 72.31 34.13 REMARK 500 TRP A 47 57.74 -98.27 REMARK 500 ARG A 58 -90.39 -130.76 REMARK 500 PRO A 60 35.46 -94.42 REMARK 500 GLN A 61 6.53 99.85 REMARK 500 THR A 62 -112.98 -121.91 REMARK 500 ARG A 63 2.99 -160.89 REMARK 500 GLN A 64 109.72 -49.49 REMARK 500 ALA A 76 -158.52 65.84 REMARK 500 ARG A 82 -13.11 73.99 REMARK 500 GLU A 183 -78.64 -29.21 REMARK 500 GLU A 184 -98.60 -105.27 REMARK 500 ASP A 185 24.79 44.68 REMARK 500 LEU A 186 122.29 172.77 REMARK 500 PRO A 253 -60.86 -28.59 REMARK 500 ALA A 297 -48.40 175.09 REMARK 500 LYS A 336 39.74 71.41 REMARK 500 LYS A 383 83.38 -156.12 REMARK 500 ASP A 388 -67.01 -109.75 REMARK 500 MET A 389 -169.25 -128.12 REMARK 500 ASP A 390 49.23 -95.30 REMARK 500 GLN A 412 -8.98 -59.65 REMARK 500 GLU A 442 79.20 -152.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP A 460 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FON A 461 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 462 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 463 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1RFL RELATED DB: PDB REMARK 900 NMR DATA DRIVEN STRUCTURAL MODEL OF G-DOMAIN OF MNME PROTEIN REMARK 900 RELATED ID: 1XZP RELATED DB: PDB REMARK 900 GTP-BINDING PROTEIN TRME REMARK 900 RELATED ID: 1XZQ RELATED DB: PDB REMARK 900 STRUCTURE OF THE GTP-BINDING PROTEIN TRME FROM THERMOTOGA MARITIMA REMARK 900 COMPLEXED WITH 5-FORMYL-THF REMARK 900 RELATED ID: 2GJA RELATED DB: PDB REMARK 900 STRUCTURE OF THE MNME G-DOMAIN IN COMPLEX WITH GDP*ALF4-, MG2+ AND REMARK 900 NH4+ REMARK 900 RELATED ID: 2GJ8 RELATED DB: PDB REMARK 900 MNME G-DOMAIN IN COMPLEX WITH GDP-ALF4-, MG2+ AND K+ REMARK 900 RELATED ID: 2GJ9 RELATED DB: PDB REMARK 900 MNME G-DOMAIN IN COMPLEX WITH GDP-ALF4-, MG2+ AND RB+ REMARK 900 RELATED ID: 3CP2 RELATED DB: PDB REMARK 900 GIDA FROM ESCHERICHIA COLI REMARK 900 RELATED ID: 3CP8 RELATED DB: PDB REMARK 900 GIDA FROM CHLOROBIUM TEPIDUM REMARK 900 RELATED ID: 3GEE RELATED DB: PDB REMARK 900 MNME FROM CHLOROBIUM TEPIDUM IN COMPLEX WITH FOLINIC ACID AND GDP REMARK 900 RELATED ID: 3GEI RELATED DB: PDB REMARK 900 MNME FROM CHLOROBIUM TEPIDUM IN COMPLEX WITH GCP AND MG DBREF 3GEH A 1 459 UNP Q8YN91 MNME_ANASP 1 459 SEQADV 3GEH GLY A -2 UNP Q8YN91 EXPRESSION TAG SEQADV 3GEH SER A -1 UNP Q8YN91 EXPRESSION TAG SEQADV 3GEH HIS A 0 UNP Q8YN91 EXPRESSION TAG SEQRES 1 A 462 GLY SER HIS MET ALA ILE THR GLY THR ILE ALA ALA ILE SEQRES 2 A 462 ALA THR ALA ILE VAL PRO GLN GLN GLY SER VAL GLY ILE SEQRES 3 A 462 VAL ARG VAL SER GLY SER GLN ALA ILE ALA ILE ALA GLN SEQRES 4 A 462 THR LEU PHE ASP ALA PRO GLY LYS GLN VAL TRP GLU SER SEQRES 5 A 462 HIS ARG ILE LEU TYR GLY TYR ILE ARG HIS PRO GLN THR SEQRES 6 A 462 ARG GLN ILE VAL ASP GLU ALA LEU LEU LEU LEU MET LYS SEQRES 7 A 462 ALA PRO ARG SER TYR THR ARG GLU ASP VAL VAL GLU PHE SEQRES 8 A 462 HIS CYS HIS GLY GLY ILE ILE ALA VAL GLN GLN VAL LEU SEQRES 9 A 462 GLN LEU CYS LEU GLU SER GLY ALA ARG LEU ALA GLN PRO SEQRES 10 A 462 GLY GLU PHE THR LEU ARG ALA PHE LEU ASN GLY ARG LEU SEQRES 11 A 462 ASP LEU THR GLN ALA GLU SER ILE ALA ASP LEU VAL GLY SEQRES 12 A 462 ALA ARG SER PRO GLN ALA ALA GLN THR ALA LEU ALA GLY SEQRES 13 A 462 LEU GLN GLY LYS LEU ALA HIS PRO ILE ARG GLN LEU ARG SEQRES 14 A 462 ALA ASN CYS LEU ASP ILE LEU ALA GLU ILE GLU ALA ARG SEQRES 15 A 462 ILE ASP PHE GLU GLU ASP LEU PRO PRO LEU ASP ASP GLU SEQRES 16 A 462 ALA ILE ILE SER ASP ILE GLU ASN ILE ALA ALA GLU ILE SEQRES 17 A 462 SER GLN LEU LEU ALA THR LYS ASP LYS GLY GLU LEU LEU SEQRES 18 A 462 ARG THR GLY LEU LYS VAL ALA ILE VAL GLY ARG PRO ASN SEQRES 19 A 462 VAL GLY LYS SER SER LEU LEU ASN ALA TRP SER GLN SER SEQRES 20 A 462 ASP ARG ALA ILE VAL THR ASP LEU PRO GLY THR THR ARG SEQRES 21 A 462 ASP VAL VAL GLU SER GLN LEU VAL VAL GLY GLY ILE PRO SEQRES 22 A 462 VAL GLN VAL LEU ASP THR ALA GLY ILE ARG GLU THR SER SEQRES 23 A 462 ASP GLN VAL GLU LYS ILE GLY VAL GLU ARG SER ARG GLN SEQRES 24 A 462 ALA ALA ASN THR ALA ASP LEU VAL LEU LEU THR ILE ASP SEQRES 25 A 462 ALA ALA THR GLY TRP THR THR GLY ASP GLN GLU ILE TYR SEQRES 26 A 462 GLU GLN VAL LYS HIS ARG PRO LEU ILE LEU VAL MET ASN SEQRES 27 A 462 LYS ILE ASP LEU VAL GLU LYS GLN LEU ILE THR SER LEU SEQRES 28 A 462 GLU TYR PRO GLU ASN ILE THR GLN ILE VAL HIS THR ALA SEQRES 29 A 462 ALA ALA GLN LYS GLN GLY ILE ASP SER LEU GLU THR ALA SEQRES 30 A 462 ILE LEU GLU ILE VAL GLN THR GLY LYS VAL GLN ALA ALA SEQRES 31 A 462 ASP MET ASP LEU ALA ILE ASN GLN ARG GLN ALA ALA ALA SEQRES 32 A 462 LEU THR GLN ALA LYS MET SER LEU GLU GLN VAL GLN ALA SEQRES 33 A 462 THR ILE THR GLN GLN LEU PRO LEU ASP PHE TRP THR ILE SEQRES 34 A 462 ASP LEU ARG GLY ALA ILE GLN ALA LEU GLY GLU ILE THR SEQRES 35 A 462 GLY GLU GLU VAL THR GLU SER VAL LEU ASP ARG ILE PHE SEQRES 36 A 462 SER ARG PHE CYS ILE GLY LYS HET GDP A 460 28 HET FON A 461 34 HET ZN A 462 1 HET ZN A 463 1 HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM FON N-{[4-({[(6R)-2-AMINO-5-FORMYL-4-OXO-1,4,5,6,7,8- HETNAM 2 FON HEXAHYDROPTERIDIN-6-YL]METHYL}AMINO)PHENYL]CARBONYL}- HETNAM 3 FON L-GLUTAMIC ACID HETNAM ZN ZINC ION HETSYN FON [6R]-5-FORMYL-5,6,7,8-TETRAHYDROFOLATE; 6R-FOLINIC ACID FORMUL 2 GDP C10 H15 N5 O11 P2 FORMUL 3 FON C20 H23 N7 O7 FORMUL 4 ZN 2(ZN 2+) HELIX 1 1 GLN A 30 LEU A 38 1 9 HELIX 2 2 ILE A 95 SER A 107 1 13 HELIX 3 3 GLY A 115 ASN A 124 1 10 HELIX 4 4 ASP A 128 ALA A 141 1 14 HELIX 5 5 SER A 143 GLY A 156 1 14 HELIX 6 6 LEU A 158 ILE A 180 1 23 HELIX 7 7 ALA A 193 GLY A 221 1 29 HELIX 8 8 GLY A 233 ARG A 246 1 14 HELIX 9 9 THR A 256 SER A 262 1 7 HELIX 10 10 THR A 315 LYS A 326 1 12 HELIX 11 11 GLU A 341 ILE A 345 5 5 HELIX 12 12 GLY A 367 GLN A 380 1 14 HELIX 13 13 ASN A 394 ILE A 415 1 22 HELIX 14 14 PRO A 420 PHE A 423 5 4 HELIX 15 15 TRP A 424 GLY A 440 1 17 HELIX 16 16 THR A 444 ARG A 454 1 11 SHEET 1 A 7 PHE A 39 ASP A 40 0 SHEET 2 A 7 ARG A 51 ILE A 57 -1 O TYR A 56 N ASP A 40 SHEET 3 A 7 ASP A 67 MET A 74 -1 O LEU A 71 N LEU A 53 SHEET 4 A 7 VAL A 85 CYS A 90 -1 O VAL A 85 N MET A 74 SHEET 5 A 7 GLY A 22 SER A 27 -1 N VAL A 26 O VAL A 86 SHEET 6 A 7 ILE A 7 ILE A 10 -1 N ILE A 7 O SER A 27 SHEET 7 A 7 ARG A 110 LEU A 111 1 O ARG A 110 N ALA A 8 SHEET 1 B 6 GLN A 263 VAL A 266 0 SHEET 2 B 6 ILE A 269 VAL A 273 -1 O VAL A 271 N LEU A 264 SHEET 3 B 6 LEU A 222 GLY A 228 1 N LEU A 222 O GLN A 272 SHEET 4 B 6 LEU A 303 ASP A 309 1 O THR A 307 N VAL A 227 SHEET 5 B 6 LEU A 330 ASN A 335 1 O VAL A 333 N LEU A 306 SHEET 6 B 6 ILE A 357 THR A 360 1 O VAL A 358 N MET A 334 LINK OE2 GLU A 349 ZN ZN A 462 1555 1555 2.36 LINK O3B GDP A 460 ZN ZN A 463 1555 1555 1.99 SITE 1 AC1 15 ARG A 229 ASN A 231 VAL A 232 GLY A 233 SITE 2 AC1 15 LYS A 234 SER A 235 SER A 236 ASN A 335 SITE 3 AC1 15 LYS A 336 ASP A 338 LEU A 339 ALA A 361 SITE 4 AC1 15 ALA A 362 ALA A 363 ZN A 463 SITE 1 AC2 12 VAL A 21 ARG A 25 TYR A 54 GLU A 68 SITE 2 AC2 12 LEU A 70 ARG A 78 SER A 79 TYR A 80 SITE 3 AC2 12 ARG A 82 GLU A 87 HIS A 89 ARG A 126 SITE 1 AC3 4 HIS A 0 GLU A 349 GLU A 445 ASP A 449 SITE 1 AC4 2 SER A 235 GDP A 460 CRYST1 124.279 124.279 174.701 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008046 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008046 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005724 0.00000