HEADER TRANSFERASE 26-FEB-09 3GEY TITLE CRYSTAL STRUCTURE OF HUMAN POLY(ADP-RIBOSE) POLYMERASE 15, CATALYTIC TITLE 2 FRAGMENT IN COMPLEX WITH AN INHIBITOR PJ34 COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLY [ADP-RIBOSE] POLYMERASE 15; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: CATALYTIC DOMAIN: RESIDUES 459-656; COMPND 5 SYNONYM: PARP-15, B-AGGRESSIVE LYMPHOMA PROTEIN 3; COMPND 6 EC: 2.4.2.30; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BAL3, PARP15; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) R3 PRARE; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC-BSA4 KEYWDS PARP, POLY(ADP-RIBOSE) POLYMERASE, BAL-3, SGC, STRUCTURAL GENOMICS KEYWDS 2 CONSORTIUM, GLYCOSYLTRANSFERASE, NAD, NUCLEUS, TRANSCRIPTION, KEYWDS 3 TRANSCRIPTION REGULATION, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR T.KARLBERG,M.I.SIPONEN,C.H.ARROWSMITH,H.BERGLUND,C.BOUNTRA,R.COLLINS, AUTHOR 2 A.M.EDWARDS,S.FLODIN,A.FLORES,S.GRASLUND,M.HAMMARSTROM,A.JOHANSSON, AUTHOR 3 I.JOHANSSON,T.KOTENYOVA,M.MOCHE,P.NORDLUND,T.NYMAN,C.PERSSON, AUTHOR 4 J.SAGEMARK,P.SCHUTZ,A.G.THORSELL,L.TRESAUGUES,S.VAN DEN BERG, AUTHOR 5 J.WEIGELT,M.WELIN,M.WISNIEWSKA,H.SCHULER,STRUCTURAL GENOMICS AUTHOR 6 CONSORTIUM (SGC) REVDAT 5 29-MAY-24 3GEY 1 REMARK REVDAT 4 06-SEP-23 3GEY 1 REMARK SEQADV REVDAT 3 22-APR-15 3GEY 1 JRNL REVDAT 2 04-FEB-15 3GEY 1 JRNL VERSN REVDAT 1 24-MAR-09 3GEY 0 JRNL AUTH T.KARLBERG,M.KLEPSCH,A.G.THORSELL,C.D.ANDERSSON,A.LINUSSON, JRNL AUTH 2 H.SCHULER JRNL TITL STRUCTURAL BASIS FOR LACK OF ADP-RIBOSYLTRANSFERASE ACTIVITY JRNL TITL 2 IN POLY(ADP-RIBOSE) POLYMERASE-13/ZINC FINGER ANTIVIRAL JRNL TITL 3 PROTEIN. JRNL REF J.BIOL.CHEM. V. 290 7336 2015 JRNL REFN ISSN 0021-9258 JRNL PMID 25635049 JRNL DOI 10.1074/JBC.M114.630160 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : TWIN_LSQ_F REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.19 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 41728 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.270 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.830 REMARK 3 FREE R VALUE TEST SET COUNT : 2016 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 24.1946 - 5.9436 0.98 2034 98 0.1884 0.2563 REMARK 3 2 5.9436 - 4.7291 0.98 2014 96 0.1732 0.2160 REMARK 3 3 4.7291 - 4.1347 0.98 1985 100 0.1328 0.1721 REMARK 3 4 4.1347 - 3.7582 0.98 1993 98 0.1588 0.2101 REMARK 3 5 3.7582 - 3.4897 0.98 1982 102 0.1695 0.2633 REMARK 3 6 3.4897 - 3.2844 0.98 2010 102 0.1893 0.2379 REMARK 3 7 3.2844 - 3.1203 0.98 1987 101 0.2139 0.3071 REMARK 3 8 3.1203 - 2.9847 0.98 1996 98 0.2336 0.2700 REMARK 3 9 2.9847 - 2.8700 0.98 2006 98 0.2532 0.3863 REMARK 3 10 2.8700 - 2.7711 0.98 1984 102 0.2547 0.3272 REMARK 3 11 2.7711 - 2.6846 0.98 1960 101 0.2580 0.2941 REMARK 3 12 2.6846 - 2.6080 0.98 1980 102 0.2587 0.3361 REMARK 3 13 2.6080 - 2.5394 0.98 1976 102 0.2749 0.2708 REMARK 3 14 2.5394 - 2.4775 0.98 1967 95 0.2807 0.3036 REMARK 3 15 2.4775 - 2.4212 0.98 1996 104 0.2754 0.3246 REMARK 3 16 2.4212 - 2.3697 0.98 1964 97 0.2889 0.3763 REMARK 3 17 2.3697 - 2.3224 0.98 1988 101 0.2796 0.3067 REMARK 3 18 2.3224 - 2.2786 0.98 1960 98 0.2685 0.3577 REMARK 3 19 2.2786 - 2.2379 0.98 2000 103 0.2810 0.3148 REMARK 3 20 2.2379 - 2.2000 0.98 1950 98 0.2832 0.3325 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.40 REMARK 3 B_SOL : 26.87 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 38.480 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 6440 REMARK 3 ANGLE : 0.809 8734 REMARK 3 CHIRALITY : 0.055 912 REMARK 3 PLANARITY : 0.003 1138 REMARK 3 DIHEDRAL : 16.550 2305 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3GEY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-MAR-09. REMARK 100 THE DEPOSITION ID IS D_1000051775. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-DEC-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98004 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : KIRKPATRICK BAEZ BIMORPH MIRROR REMARK 200 PAIR FOR HORIZONTAL AND VERTICAL REMARK 200 FOCUSING REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM Q315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42012 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.10200 REMARK 200 R SYM (I) : 0.09700 REMARK 200 FOR THE DATA SET : 10.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.26 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.22400 REMARK 200 R SYM FOR SHELL (I) : 0.25600 REMARK 200 FOR SHELL : 5.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 3BLJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 26% PEG 3350, 0.1M HEPES, PH 7.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 68.81500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2570 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18290 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2610 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18130 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 436 REMARK 465 HIS A 437 REMARK 465 HIS A 438 REMARK 465 HIS A 439 REMARK 465 HIS A 440 REMARK 465 HIS A 441 REMARK 465 HIS A 442 REMARK 465 SER A 443 REMARK 465 SER A 444 REMARK 465 GLY A 445 REMARK 465 VAL A 446 REMARK 465 ASP A 447 REMARK 465 LEU A 448 REMARK 465 GLY A 449 REMARK 465 THR A 450 REMARK 465 GLU A 451 REMARK 465 ASN A 452 REMARK 465 LEU A 453 REMARK 465 TYR A 454 REMARK 465 PHE A 455 REMARK 465 GLN A 456 REMARK 465 SER A 457 REMARK 465 MET A 458 REMARK 465 ASN A 459 REMARK 465 ASP A 527 REMARK 465 HIS A 528 REMARK 465 LYS A 529 REMARK 465 ALA A 557 REMARK 465 GLY A 558 REMARK 465 LYS A 559 REMARK 465 ASN A 560 REMARK 465 ALA A 561 REMARK 465 VAL A 562 REMARK 465 MET B 436 REMARK 465 HIS B 437 REMARK 465 HIS B 438 REMARK 465 HIS B 439 REMARK 465 HIS B 440 REMARK 465 HIS B 441 REMARK 465 HIS B 442 REMARK 465 SER B 443 REMARK 465 SER B 444 REMARK 465 GLY B 445 REMARK 465 VAL B 446 REMARK 465 ASP B 447 REMARK 465 LEU B 448 REMARK 465 GLY B 449 REMARK 465 THR B 450 REMARK 465 GLU B 451 REMARK 465 ASN B 452 REMARK 465 LEU B 453 REMARK 465 TYR B 454 REMARK 465 PHE B 455 REMARK 465 GLN B 456 REMARK 465 SER B 457 REMARK 465 MET B 458 REMARK 465 ASN B 459 REMARK 465 ALA B 557 REMARK 465 GLY B 558 REMARK 465 LYS B 559 REMARK 465 ASN B 560 REMARK 465 ALA B 561 REMARK 465 VAL B 562 REMARK 465 ALA B 656 REMARK 465 MET C 436 REMARK 465 HIS C 437 REMARK 465 HIS C 438 REMARK 465 HIS C 439 REMARK 465 HIS C 440 REMARK 465 HIS C 441 REMARK 465 HIS C 442 REMARK 465 SER C 443 REMARK 465 SER C 444 REMARK 465 GLY C 445 REMARK 465 VAL C 446 REMARK 465 ASP C 447 REMARK 465 LEU C 448 REMARK 465 GLY C 449 REMARK 465 THR C 450 REMARK 465 GLU C 451 REMARK 465 ASN C 452 REMARK 465 LEU C 453 REMARK 465 TYR C 454 REMARK 465 PHE C 455 REMARK 465 GLN C 456 REMARK 465 SER C 457 REMARK 465 MET C 458 REMARK 465 ASN C 459 REMARK 465 ASP C 527 REMARK 465 HIS C 528 REMARK 465 MET D 436 REMARK 465 HIS D 437 REMARK 465 HIS D 438 REMARK 465 HIS D 439 REMARK 465 HIS D 440 REMARK 465 HIS D 441 REMARK 465 HIS D 442 REMARK 465 SER D 443 REMARK 465 SER D 444 REMARK 465 GLY D 445 REMARK 465 VAL D 446 REMARK 465 ASP D 447 REMARK 465 LEU D 448 REMARK 465 GLY D 449 REMARK 465 THR D 450 REMARK 465 GLU D 451 REMARK 465 ASN D 452 REMARK 465 LEU D 453 REMARK 465 TYR D 454 REMARK 465 PHE D 455 REMARK 465 GLN D 456 REMARK 465 SER D 457 REMARK 465 MET D 458 REMARK 465 ASP D 527 REMARK 465 HIS D 528 REMARK 465 LYS D 529 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG C 520 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 529 CG CD CE NZ REMARK 470 LYS C 559 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 582 -70.84 -103.31 REMARK 500 PRO A 621 -1.25 -59.43 REMARK 500 PRO B 461 161.60 -47.50 REMARK 500 ASN B 468 39.14 37.78 REMARK 500 ASN B 530 67.88 -101.51 REMARK 500 TYR B 582 -72.50 -101.60 REMARK 500 PRO B 621 -1.58 -57.05 REMARK 500 ASN B 644 34.60 -92.40 REMARK 500 TYR C 582 -75.14 -101.68 REMARK 500 SER C 634 68.46 -163.33 REMARK 500 ASN D 468 117.39 -30.05 REMARK 500 HIS D 469 -15.78 76.49 REMARK 500 CYS D 473 149.00 -170.81 REMARK 500 TYR D 582 -69.21 -107.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE P34 A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE P34 B 701 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3BLJ RELATED DB: PDB REMARK 900 PARP15 APO STRUCTURE DBREF 3GEY A 459 656 UNP Q460N3 PAR15_HUMAN 459 656 DBREF 3GEY B 459 656 UNP Q460N3 PAR15_HUMAN 459 656 DBREF 3GEY C 459 656 UNP Q460N3 PAR15_HUMAN 459 656 DBREF 3GEY D 459 656 UNP Q460N3 PAR15_HUMAN 459 656 SEQADV 3GEY MET A 436 UNP Q460N3 EXPRESSION TAG SEQADV 3GEY HIS A 437 UNP Q460N3 EXPRESSION TAG SEQADV 3GEY HIS A 438 UNP Q460N3 EXPRESSION TAG SEQADV 3GEY HIS A 439 UNP Q460N3 EXPRESSION TAG SEQADV 3GEY HIS A 440 UNP Q460N3 EXPRESSION TAG SEQADV 3GEY HIS A 441 UNP Q460N3 EXPRESSION TAG SEQADV 3GEY HIS A 442 UNP Q460N3 EXPRESSION TAG SEQADV 3GEY SER A 443 UNP Q460N3 EXPRESSION TAG SEQADV 3GEY SER A 444 UNP Q460N3 EXPRESSION TAG SEQADV 3GEY GLY A 445 UNP Q460N3 EXPRESSION TAG SEQADV 3GEY VAL A 446 UNP Q460N3 EXPRESSION TAG SEQADV 3GEY ASP A 447 UNP Q460N3 EXPRESSION TAG SEQADV 3GEY LEU A 448 UNP Q460N3 EXPRESSION TAG SEQADV 3GEY GLY A 449 UNP Q460N3 EXPRESSION TAG SEQADV 3GEY THR A 450 UNP Q460N3 EXPRESSION TAG SEQADV 3GEY GLU A 451 UNP Q460N3 EXPRESSION TAG SEQADV 3GEY ASN A 452 UNP Q460N3 EXPRESSION TAG SEQADV 3GEY LEU A 453 UNP Q460N3 EXPRESSION TAG SEQADV 3GEY TYR A 454 UNP Q460N3 EXPRESSION TAG SEQADV 3GEY PHE A 455 UNP Q460N3 EXPRESSION TAG SEQADV 3GEY GLN A 456 UNP Q460N3 EXPRESSION TAG SEQADV 3GEY SER A 457 UNP Q460N3 EXPRESSION TAG SEQADV 3GEY MET A 458 UNP Q460N3 EXPRESSION TAG SEQADV 3GEY MET B 436 UNP Q460N3 EXPRESSION TAG SEQADV 3GEY HIS B 437 UNP Q460N3 EXPRESSION TAG SEQADV 3GEY HIS B 438 UNP Q460N3 EXPRESSION TAG SEQADV 3GEY HIS B 439 UNP Q460N3 EXPRESSION TAG SEQADV 3GEY HIS B 440 UNP Q460N3 EXPRESSION TAG SEQADV 3GEY HIS B 441 UNP Q460N3 EXPRESSION TAG SEQADV 3GEY HIS B 442 UNP Q460N3 EXPRESSION TAG SEQADV 3GEY SER B 443 UNP Q460N3 EXPRESSION TAG SEQADV 3GEY SER B 444 UNP Q460N3 EXPRESSION TAG SEQADV 3GEY GLY B 445 UNP Q460N3 EXPRESSION TAG SEQADV 3GEY VAL B 446 UNP Q460N3 EXPRESSION TAG SEQADV 3GEY ASP B 447 UNP Q460N3 EXPRESSION TAG SEQADV 3GEY LEU B 448 UNP Q460N3 EXPRESSION TAG SEQADV 3GEY GLY B 449 UNP Q460N3 EXPRESSION TAG SEQADV 3GEY THR B 450 UNP Q460N3 EXPRESSION TAG SEQADV 3GEY GLU B 451 UNP Q460N3 EXPRESSION TAG SEQADV 3GEY ASN B 452 UNP Q460N3 EXPRESSION TAG SEQADV 3GEY LEU B 453 UNP Q460N3 EXPRESSION TAG SEQADV 3GEY TYR B 454 UNP Q460N3 EXPRESSION TAG SEQADV 3GEY PHE B 455 UNP Q460N3 EXPRESSION TAG SEQADV 3GEY GLN B 456 UNP Q460N3 EXPRESSION TAG SEQADV 3GEY SER B 457 UNP Q460N3 EXPRESSION TAG SEQADV 3GEY MET B 458 UNP Q460N3 EXPRESSION TAG SEQADV 3GEY MET C 436 UNP Q460N3 EXPRESSION TAG SEQADV 3GEY HIS C 437 UNP Q460N3 EXPRESSION TAG SEQADV 3GEY HIS C 438 UNP Q460N3 EXPRESSION TAG SEQADV 3GEY HIS C 439 UNP Q460N3 EXPRESSION TAG SEQADV 3GEY HIS C 440 UNP Q460N3 EXPRESSION TAG SEQADV 3GEY HIS C 441 UNP Q460N3 EXPRESSION TAG SEQADV 3GEY HIS C 442 UNP Q460N3 EXPRESSION TAG SEQADV 3GEY SER C 443 UNP Q460N3 EXPRESSION TAG SEQADV 3GEY SER C 444 UNP Q460N3 EXPRESSION TAG SEQADV 3GEY GLY C 445 UNP Q460N3 EXPRESSION TAG SEQADV 3GEY VAL C 446 UNP Q460N3 EXPRESSION TAG SEQADV 3GEY ASP C 447 UNP Q460N3 EXPRESSION TAG SEQADV 3GEY LEU C 448 UNP Q460N3 EXPRESSION TAG SEQADV 3GEY GLY C 449 UNP Q460N3 EXPRESSION TAG SEQADV 3GEY THR C 450 UNP Q460N3 EXPRESSION TAG SEQADV 3GEY GLU C 451 UNP Q460N3 EXPRESSION TAG SEQADV 3GEY ASN C 452 UNP Q460N3 EXPRESSION TAG SEQADV 3GEY LEU C 453 UNP Q460N3 EXPRESSION TAG SEQADV 3GEY TYR C 454 UNP Q460N3 EXPRESSION TAG SEQADV 3GEY PHE C 455 UNP Q460N3 EXPRESSION TAG SEQADV 3GEY GLN C 456 UNP Q460N3 EXPRESSION TAG SEQADV 3GEY SER C 457 UNP Q460N3 EXPRESSION TAG SEQADV 3GEY MET C 458 UNP Q460N3 EXPRESSION TAG SEQADV 3GEY MET D 436 UNP Q460N3 EXPRESSION TAG SEQADV 3GEY HIS D 437 UNP Q460N3 EXPRESSION TAG SEQADV 3GEY HIS D 438 UNP Q460N3 EXPRESSION TAG SEQADV 3GEY HIS D 439 UNP Q460N3 EXPRESSION TAG SEQADV 3GEY HIS D 440 UNP Q460N3 EXPRESSION TAG SEQADV 3GEY HIS D 441 UNP Q460N3 EXPRESSION TAG SEQADV 3GEY HIS D 442 UNP Q460N3 EXPRESSION TAG SEQADV 3GEY SER D 443 UNP Q460N3 EXPRESSION TAG SEQADV 3GEY SER D 444 UNP Q460N3 EXPRESSION TAG SEQADV 3GEY GLY D 445 UNP Q460N3 EXPRESSION TAG SEQADV 3GEY VAL D 446 UNP Q460N3 EXPRESSION TAG SEQADV 3GEY ASP D 447 UNP Q460N3 EXPRESSION TAG SEQADV 3GEY LEU D 448 UNP Q460N3 EXPRESSION TAG SEQADV 3GEY GLY D 449 UNP Q460N3 EXPRESSION TAG SEQADV 3GEY THR D 450 UNP Q460N3 EXPRESSION TAG SEQADV 3GEY GLU D 451 UNP Q460N3 EXPRESSION TAG SEQADV 3GEY ASN D 452 UNP Q460N3 EXPRESSION TAG SEQADV 3GEY LEU D 453 UNP Q460N3 EXPRESSION TAG SEQADV 3GEY TYR D 454 UNP Q460N3 EXPRESSION TAG SEQADV 3GEY PHE D 455 UNP Q460N3 EXPRESSION TAG SEQADV 3GEY GLN D 456 UNP Q460N3 EXPRESSION TAG SEQADV 3GEY SER D 457 UNP Q460N3 EXPRESSION TAG SEQADV 3GEY MET D 458 UNP Q460N3 EXPRESSION TAG SEQRES 1 A 221 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 221 GLY THR GLU ASN LEU TYR PHE GLN SER MET ASN LEU PRO SEQRES 3 A 221 GLU HIS TRP THR ASP MET ASN HIS GLN LEU PHE CYS MET SEQRES 4 A 221 VAL GLN LEU GLU PRO GLY GLN SER GLU TYR ASN THR ILE SEQRES 5 A 221 LYS ASP LYS PHE THR ARG THR CYS SER SER TYR ALA ILE SEQRES 6 A 221 GLU LYS ILE GLU ARG ILE GLN ASN ALA PHE LEU TRP GLN SEQRES 7 A 221 SER TYR GLN VAL LYS LYS ARG GLN MET ASP ILE LYS ASN SEQRES 8 A 221 ASP HIS LYS ASN ASN GLU ARG LEU LEU PHE HIS GLY THR SEQRES 9 A 221 ASP ALA ASP SER VAL PRO TYR VAL ASN GLN HIS GLY PHE SEQRES 10 A 221 ASN ARG SER CYS ALA GLY LYS ASN ALA VAL SER TYR GLY SEQRES 11 A 221 LYS GLY THR TYR PHE ALA VAL ASP ALA SER TYR SER ALA SEQRES 12 A 221 LYS ASP THR TYR SER LYS PRO ASP SER ASN GLY ARG LYS SEQRES 13 A 221 HIS MET TYR VAL VAL ARG VAL LEU THR GLY VAL PHE THR SEQRES 14 A 221 LYS GLY ARG ALA GLY LEU VAL THR PRO PRO PRO LYS ASN SEQRES 15 A 221 PRO HIS ASN PRO THR ASP LEU PHE ASP SER VAL THR ASN SEQRES 16 A 221 ASN THR ARG SER PRO LYS LEU PHE VAL VAL PHE PHE ASP SEQRES 17 A 221 ASN GLN ALA TYR PRO GLU TYR LEU ILE THR PHE THR ALA SEQRES 1 B 221 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 B 221 GLY THR GLU ASN LEU TYR PHE GLN SER MET ASN LEU PRO SEQRES 3 B 221 GLU HIS TRP THR ASP MET ASN HIS GLN LEU PHE CYS MET SEQRES 4 B 221 VAL GLN LEU GLU PRO GLY GLN SER GLU TYR ASN THR ILE SEQRES 5 B 221 LYS ASP LYS PHE THR ARG THR CYS SER SER TYR ALA ILE SEQRES 6 B 221 GLU LYS ILE GLU ARG ILE GLN ASN ALA PHE LEU TRP GLN SEQRES 7 B 221 SER TYR GLN VAL LYS LYS ARG GLN MET ASP ILE LYS ASN SEQRES 8 B 221 ASP HIS LYS ASN ASN GLU ARG LEU LEU PHE HIS GLY THR SEQRES 9 B 221 ASP ALA ASP SER VAL PRO TYR VAL ASN GLN HIS GLY PHE SEQRES 10 B 221 ASN ARG SER CYS ALA GLY LYS ASN ALA VAL SER TYR GLY SEQRES 11 B 221 LYS GLY THR TYR PHE ALA VAL ASP ALA SER TYR SER ALA SEQRES 12 B 221 LYS ASP THR TYR SER LYS PRO ASP SER ASN GLY ARG LYS SEQRES 13 B 221 HIS MET TYR VAL VAL ARG VAL LEU THR GLY VAL PHE THR SEQRES 14 B 221 LYS GLY ARG ALA GLY LEU VAL THR PRO PRO PRO LYS ASN SEQRES 15 B 221 PRO HIS ASN PRO THR ASP LEU PHE ASP SER VAL THR ASN SEQRES 16 B 221 ASN THR ARG SER PRO LYS LEU PHE VAL VAL PHE PHE ASP SEQRES 17 B 221 ASN GLN ALA TYR PRO GLU TYR LEU ILE THR PHE THR ALA SEQRES 1 C 221 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 C 221 GLY THR GLU ASN LEU TYR PHE GLN SER MET ASN LEU PRO SEQRES 3 C 221 GLU HIS TRP THR ASP MET ASN HIS GLN LEU PHE CYS MET SEQRES 4 C 221 VAL GLN LEU GLU PRO GLY GLN SER GLU TYR ASN THR ILE SEQRES 5 C 221 LYS ASP LYS PHE THR ARG THR CYS SER SER TYR ALA ILE SEQRES 6 C 221 GLU LYS ILE GLU ARG ILE GLN ASN ALA PHE LEU TRP GLN SEQRES 7 C 221 SER TYR GLN VAL LYS LYS ARG GLN MET ASP ILE LYS ASN SEQRES 8 C 221 ASP HIS LYS ASN ASN GLU ARG LEU LEU PHE HIS GLY THR SEQRES 9 C 221 ASP ALA ASP SER VAL PRO TYR VAL ASN GLN HIS GLY PHE SEQRES 10 C 221 ASN ARG SER CYS ALA GLY LYS ASN ALA VAL SER TYR GLY SEQRES 11 C 221 LYS GLY THR TYR PHE ALA VAL ASP ALA SER TYR SER ALA SEQRES 12 C 221 LYS ASP THR TYR SER LYS PRO ASP SER ASN GLY ARG LYS SEQRES 13 C 221 HIS MET TYR VAL VAL ARG VAL LEU THR GLY VAL PHE THR SEQRES 14 C 221 LYS GLY ARG ALA GLY LEU VAL THR PRO PRO PRO LYS ASN SEQRES 15 C 221 PRO HIS ASN PRO THR ASP LEU PHE ASP SER VAL THR ASN SEQRES 16 C 221 ASN THR ARG SER PRO LYS LEU PHE VAL VAL PHE PHE ASP SEQRES 17 C 221 ASN GLN ALA TYR PRO GLU TYR LEU ILE THR PHE THR ALA SEQRES 1 D 221 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 D 221 GLY THR GLU ASN LEU TYR PHE GLN SER MET ASN LEU PRO SEQRES 3 D 221 GLU HIS TRP THR ASP MET ASN HIS GLN LEU PHE CYS MET SEQRES 4 D 221 VAL GLN LEU GLU PRO GLY GLN SER GLU TYR ASN THR ILE SEQRES 5 D 221 LYS ASP LYS PHE THR ARG THR CYS SER SER TYR ALA ILE SEQRES 6 D 221 GLU LYS ILE GLU ARG ILE GLN ASN ALA PHE LEU TRP GLN SEQRES 7 D 221 SER TYR GLN VAL LYS LYS ARG GLN MET ASP ILE LYS ASN SEQRES 8 D 221 ASP HIS LYS ASN ASN GLU ARG LEU LEU PHE HIS GLY THR SEQRES 9 D 221 ASP ALA ASP SER VAL PRO TYR VAL ASN GLN HIS GLY PHE SEQRES 10 D 221 ASN ARG SER CYS ALA GLY LYS ASN ALA VAL SER TYR GLY SEQRES 11 D 221 LYS GLY THR TYR PHE ALA VAL ASP ALA SER TYR SER ALA SEQRES 12 D 221 LYS ASP THR TYR SER LYS PRO ASP SER ASN GLY ARG LYS SEQRES 13 D 221 HIS MET TYR VAL VAL ARG VAL LEU THR GLY VAL PHE THR SEQRES 14 D 221 LYS GLY ARG ALA GLY LEU VAL THR PRO PRO PRO LYS ASN SEQRES 15 D 221 PRO HIS ASN PRO THR ASP LEU PHE ASP SER VAL THR ASN SEQRES 16 D 221 ASN THR ARG SER PRO LYS LEU PHE VAL VAL PHE PHE ASP SEQRES 17 D 221 ASN GLN ALA TYR PRO GLU TYR LEU ILE THR PHE THR ALA HET P34 A 701 22 HET P34 B 701 22 HETNAM P34 N~2~,N~2~-DIMETHYL-N~1~-(6-OXO-5,6- HETNAM 2 P34 DIHYDROPHENANTHRIDIN-2-YL)GLYCINAMIDE FORMUL 5 P34 2(C17 H17 N3 O2) FORMUL 7 HOH *27(H2 O) HELIX 1 1 GLN A 481 SER A 496 1 16 HELIX 2 2 ALA A 509 ASN A 526 1 18 HELIX 3 3 ASP A 540 ASP A 542 5 3 HELIX 4 4 SER A 543 GLY A 551 1 9 HELIX 5 5 ASP A 573 ALA A 578 1 6 HELIX 6 6 PHE A 642 ASN A 644 5 3 HELIX 7 7 GLN B 481 SER B 496 1 16 HELIX 8 8 ALA B 509 ASN B 526 1 18 HELIX 9 9 SER B 543 GLY B 551 1 9 HELIX 10 10 ASP B 573 ALA B 578 1 6 HELIX 11 11 PHE B 642 ASN B 644 5 3 HELIX 12 12 GLN C 481 SER C 496 1 16 HELIX 13 13 ALA C 509 ASN C 526 1 18 HELIX 14 14 ASP C 540 ASP C 542 5 3 HELIX 15 15 SER C 543 GLY C 551 1 9 HELIX 16 16 ASP C 573 ALA C 578 1 6 HELIX 17 17 GLN D 481 SER D 496 1 16 HELIX 18 18 ALA D 509 ASN D 526 1 18 HELIX 19 19 ASP D 540 ASP D 542 5 3 HELIX 20 20 SER D 543 GLY D 551 1 9 HELIX 21 21 ASP D 573 ALA D 578 1 6 SHEET 1 A 5 PHE A 472 GLN A 476 0 SHEET 2 A 5 ALA A 499 ASN A 508 -1 O ARG A 505 N VAL A 475 SHEET 3 A 5 ALA A 646 THR A 655 -1 O GLU A 649 N ILE A 506 SHEET 4 A 5 LYS A 591 LEU A 599 -1 N MET A 593 O ILE A 652 SHEET 5 A 5 GLU A 532 THR A 539 -1 N HIS A 537 O TYR A 594 SHEET 1 B 4 THR A 568 ALA A 571 0 SHEET 2 B 4 LEU A 637 VAL A 640 -1 O PHE A 638 N PHE A 570 SHEET 3 B 4 SER A 627 THR A 629 -1 N VAL A 628 O VAL A 639 SHEET 4 B 4 PHE A 603 LYS A 605 1 N THR A 604 O THR A 629 SHEET 1 C 2 PRO A 615 ASN A 617 0 SHEET 2 C 2 ASN A 620 LEU A 624 -1 O ASP A 623 N LYS A 616 SHEET 1 D 5 PHE B 472 GLN B 476 0 SHEET 2 D 5 ALA B 499 ASN B 508 -1 O ARG B 505 N VAL B 475 SHEET 3 D 5 ALA B 646 THR B 655 -1 O GLU B 649 N ILE B 506 SHEET 4 D 5 LYS B 591 LEU B 599 -1 N LYS B 591 O PHE B 654 SHEET 5 D 5 GLU B 532 THR B 539 -1 N LEU B 535 O VAL B 596 SHEET 1 E 4 THR B 568 ALA B 571 0 SHEET 2 E 4 LEU B 637 VAL B 640 -1 O PHE B 638 N PHE B 570 SHEET 3 E 4 SER B 627 THR B 629 -1 N VAL B 628 O VAL B 639 SHEET 4 E 4 PHE B 603 LYS B 605 1 N THR B 604 O THR B 629 SHEET 1 F 5 PHE C 472 GLN C 476 0 SHEET 2 F 5 ALA C 499 ASN C 508 -1 O ARG C 505 N VAL C 475 SHEET 3 F 5 ALA C 646 THR C 655 -1 O GLU C 649 N ILE C 506 SHEET 4 F 5 LYS C 591 LEU C 599 -1 N MET C 593 O ILE C 652 SHEET 5 F 5 GLU C 532 THR C 539 -1 N HIS C 537 O TYR C 594 SHEET 1 G 4 THR C 568 ALA C 571 0 SHEET 2 G 4 LEU C 637 VAL C 640 -1 O PHE C 638 N PHE C 570 SHEET 3 G 4 SER C 627 THR C 629 -1 N VAL C 628 O VAL C 639 SHEET 4 G 4 PHE C 603 LYS C 605 1 N THR C 604 O THR C 629 SHEET 1 H 5 PHE D 472 GLN D 476 0 SHEET 2 H 5 ALA D 499 ASN D 508 -1 O ARG D 505 N VAL D 475 SHEET 3 H 5 ALA D 646 THR D 655 -1 O GLU D 649 N ILE D 506 SHEET 4 H 5 LYS D 591 LEU D 599 -1 N MET D 593 O ILE D 652 SHEET 5 H 5 GLU D 532 THR D 539 -1 N HIS D 537 O TYR D 594 SHEET 1 I 4 THR D 568 ALA D 571 0 SHEET 2 I 4 LEU D 637 VAL D 640 -1 O PHE D 638 N PHE D 570 SHEET 3 I 4 SER D 627 THR D 629 -1 N VAL D 628 O VAL D 639 SHEET 4 I 4 PHE D 603 LYS D 605 1 N THR D 604 O THR D 629 SITE 1 AC1 8 PHE A 536 HIS A 537 GLY A 538 TYR A 569 SITE 2 AC1 8 ALA A 571 TYR A 576 SER A 577 TYR A 582 SITE 1 AC2 6 HIS B 537 GLY B 538 TYR B 569 TYR B 576 SITE 2 AC2 6 SER B 577 TYR B 582 CRYST1 45.080 137.630 68.050 90.00 90.37 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022183 0.000000 0.000143 0.00000 SCALE2 0.000000 0.007266 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014695 0.00000