HEADER UNKNOWN FUNCTION 26-FEB-09 3GF6 TITLE CRYSTAL STRUCTURE OF A BACTERIAL LIPOPROTEIN (BT_1233) FROM TITLE 2 BACTEROIDES THETAIOTAOMICRON VPI-5482 AT 1.69 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED BACTERIAL LIPOPROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES THETAIOTAOMICRON VPI-5482; SOURCE 3 ORGANISM_TAXID: 226186; SOURCE 4 GENE: BT_1233, NP_810146.1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS ALL-BETA FOLD, STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL KEYWDS 2 GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-2, UNKNOWN KEYWDS 3 FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 7 01-FEB-23 3GF6 1 REMARK SEQADV REVDAT 6 24-JUL-19 3GF6 1 REMARK LINK REVDAT 5 01-NOV-17 3GF6 1 REMARK REVDAT 4 13-JUL-11 3GF6 1 VERSN REVDAT 3 23-MAR-11 3GF6 1 HEADER TITLE KEYWDS REVDAT 2 24-NOV-09 3GF6 1 TITLE REVDAT 1 17-MAR-09 3GF6 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF BACTERIAL LIPOPROTEIN OF UNKNOWN JRNL TITL 2 FUNCTION (NP_810146.1) FROM BACTEROIDES THETAIOTAOMICRON JRNL TITL 3 VPI-5482 AT 1.69 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.69 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0053 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.69 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.34 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 51442 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.163 REMARK 3 R VALUE (WORKING SET) : 0.161 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2615 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.69 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.73 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3542 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.95 REMARK 3 BIN R VALUE (WORKING SET) : 0.2700 REMARK 3 BIN FREE R VALUE SET COUNT : 214 REMARK 3 BIN FREE R VALUE : 0.2910 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3495 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 32 REMARK 3 SOLVENT ATOMS : 664 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 17.78 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.22 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.57000 REMARK 3 B22 (A**2) : 1.68000 REMARK 3 B33 (A**2) : -0.11000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.102 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.108 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.074 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.153 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3746 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2606 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5087 ; 1.498 ; 1.979 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6368 ; 0.838 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 485 ; 7.036 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 186 ;34.751 ;24.624 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 657 ;12.350 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;15.127 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 546 ; 0.091 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4215 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 784 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2248 ; 1.650 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 907 ; 0.703 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3653 ; 2.471 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1498 ; 3.757 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1409 ; 5.215 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 24 A 241 5 REMARK 3 1 B 24 B 241 5 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 1258 ; 0.190 ; 0.500 REMARK 3 LOOSE POSITIONAL 1 A (A): 1543 ; 0.640 ; 5.000 REMARK 3 MEDIUM THERMAL 1 B (A**2): 1258 ; 1.080 ; 2.000 REMARK 3 LOOSE THERMAL 1 B (A**2): 1543 ; 1.300 ;10.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 24 A 242 REMARK 3 ORIGIN FOR THE GROUP (A): 35.8685 53.2568 12.7702 REMARK 3 T TENSOR REMARK 3 T11: 0.0067 T22: 0.0204 REMARK 3 T33: 0.0040 T12: 0.0005 REMARK 3 T13: 0.0013 T23: -0.0073 REMARK 3 L TENSOR REMARK 3 L11: 0.6972 L22: 0.6342 REMARK 3 L33: 0.4149 L12: 0.2691 REMARK 3 L13: -0.0379 L23: -0.2867 REMARK 3 S TENSOR REMARK 3 S11: -0.0305 S12: 0.0989 S13: -0.0504 REMARK 3 S21: -0.0450 S22: 0.0347 S23: -0.0056 REMARK 3 S31: -0.0112 S32: -0.0454 S33: -0.0042 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 24 B 241 REMARK 3 ORIGIN FOR THE GROUP (A): 63.5159 79.8329 21.4320 REMARK 3 T TENSOR REMARK 3 T11: 0.0118 T22: 0.0338 REMARK 3 T33: 0.0284 T12: 0.0010 REMARK 3 T13: -0.0066 T23: -0.0170 REMARK 3 L TENSOR REMARK 3 L11: 0.6780 L22: 0.4106 REMARK 3 L33: 0.6029 L12: 0.2458 REMARK 3 L13: -0.1072 L23: -0.0140 REMARK 3 S TENSOR REMARK 3 S11: 0.0319 S12: 0.0348 S13: -0.1082 REMARK 3 S21: -0.0407 S22: -0.0265 S23: -0.0182 REMARK 3 S31: 0.0142 S32: -0.0869 S33: -0.0054 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. A MET-INHIBITION PROTOCOL WAS USED FOR REMARK 3 SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE REMARK 3 OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.85 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 3. ATOM RECORDS CONTAIN RESIDUAL B FACTORS ONLY. REMARK 3 4. ETHYLENE GLYCOLS (EDO) USED AS CRYOPROTECTANT WERE MODELED REMARK 3 INTO THE STRUCTURE. REMARK 4 REMARK 4 3GF6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-FEB-09. REMARK 100 THE DEPOSITION ID IS D_1000051782. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-JAN-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97951 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : FLAT COLLIMATING MIRROR, TOROID REMARK 200 FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51502 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.690 REMARK 200 RESOLUTION RANGE LOW (A) : 48.337 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.10500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.69 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.75 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.63700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: THE AND R MERGE VALUES REPORTED HERE ARE REMARK 200 BASED ON TREATING FRIEDEL PAIRS AS SEPARATE REFLECTIONS. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 31.3000% POLYETHYLENE GLYCOL 6000, REMARK 280 0.1M MES PH 6.5, NANODROP, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.46550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.54950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.77050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 47.54950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.46550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.77050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 ASP A 22 REMARK 465 ASN A 23 REMARK 465 GLU A 243 REMARK 465 MSE A 244 REMARK 465 GLY B 0 REMARK 465 ASP B 22 REMARK 465 ASN B 23 REMARK 465 GLU B 242 REMARK 465 GLU B 243 REMARK 465 MSE B 244 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 24 CG OD1 OD2 REMARK 470 SER A 241 OG REMARK 470 GLU A 242 CG CD OE1 OE2 REMARK 470 ASP B 24 CG OD1 OD2 REMARK 470 GLU B 46 CG CD OE1 OE2 REMARK 470 GLU B 47 CG CD OE1 OE2 REMARK 470 GLN B 90 CD OE1 NE2 REMARK 470 GLN B 126 CG CD OE1 NE2 REMARK 470 LYS B 131 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 248 O HOH A 360 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 200 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG B 190 NE - CZ - NH1 ANGL. DEV. = 4.7 DEGREES REMARK 500 ARG B 190 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 195 89.72 -158.95 REMARK 500 ASP A 199 88.68 -151.97 REMARK 500 GLN B 67 149.57 -174.70 REMARK 500 ASP B 199 86.12 -150.69 REMARK 500 LYS B 220 -169.78 -110.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 4 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 6 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 7 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 5 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 8 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 392967 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT (RESIDUES 22-244) WAS EXPRESSED WITH A PURIFICATION REMARK 999 TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE REMARK 999 LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3GF6 A 22 244 UNP Q8A8D4 Q8A8D4_BACTN 22 244 DBREF 3GF6 B 22 244 UNP Q8A8D4 Q8A8D4_BACTN 22 244 SEQADV 3GF6 GLY A 0 UNP Q8A8D4 EXPRESSION TAG SEQADV 3GF6 GLY B 0 UNP Q8A8D4 EXPRESSION TAG SEQRES 1 A 224 GLY ASP ASN ASP ALA ILE TYR TYR PRO VAL GLY ASP VAL SEQRES 2 A 224 ASP ILE GLU ARG GLY GLY PRO ALA LEU GLU VAL GLY GLU SEQRES 3 A 224 GLU ASP VAL LEU VAL ALA ARG SER PHE ASN GLU GLU ASP SEQRES 4 A 224 TYR VAL LEU ASP THR ILE ALA GLN TYR PRO ASN ASP PRO SEQRES 5 A 224 THR LEU GLY LYS LEU THR PHE MSE ILE ASP LEU LYS ASN SEQRES 6 A 224 GLN GLN LYS ASP GLN ASN VAL ALA ASP PHE ASN GLY VAL SEQRES 7 A 224 GLY LYS SER LYS LEU THR MSE SER LEU GLY TYR LYS ASP SEQRES 8 A 224 GLY ASN TYR PRO SER GLU SER GLN VAL PRO ILE TYR THR SEQRES 9 A 224 SER GLN ASP VAL THR ALA LYS TYR ALA VAL LYS LEU ARG SEQRES 10 A 224 LEU LYS GLY GLU LEU LEU VAL SER GLY ASP GLU TRP MSE SEQRES 11 A 224 ILE ASP TYR VAL TYR ALA GLN LEU ALA SER LEU PHE GLN SEQRES 12 A 224 PRO TYR PRO PRO ALA ASN PHE PRO GLU VAL PHE MSE CYS SEQRES 13 A 224 LYS GLY GLY MSE LYS LEU GLY THR PHE ASP SER PHE ARG SEQRES 14 A 224 ARG THR CYS THR PHE ASP ILE THR TYR ASP ARG SER ASP SEQRES 15 A 224 LEU SER PHE SER GLN LEU TYR PHE ASN LEU PHE ILE ASN SEQRES 16 A 224 LEU ALA GLY GLN LYS ARG GLU ASN ARG VAL ARG LEU ARG SEQRES 17 A 224 ILE ASP LYS GLU SER TYR PHE GLU LEU TYR GLU GLN SER SEQRES 18 A 224 GLU GLU MSE SEQRES 1 B 224 GLY ASP ASN ASP ALA ILE TYR TYR PRO VAL GLY ASP VAL SEQRES 2 B 224 ASP ILE GLU ARG GLY GLY PRO ALA LEU GLU VAL GLY GLU SEQRES 3 B 224 GLU ASP VAL LEU VAL ALA ARG SER PHE ASN GLU GLU ASP SEQRES 4 B 224 TYR VAL LEU ASP THR ILE ALA GLN TYR PRO ASN ASP PRO SEQRES 5 B 224 THR LEU GLY LYS LEU THR PHE MSE ILE ASP LEU LYS ASN SEQRES 6 B 224 GLN GLN LYS ASP GLN ASN VAL ALA ASP PHE ASN GLY VAL SEQRES 7 B 224 GLY LYS SER LYS LEU THR MSE SER LEU GLY TYR LYS ASP SEQRES 8 B 224 GLY ASN TYR PRO SER GLU SER GLN VAL PRO ILE TYR THR SEQRES 9 B 224 SER GLN ASP VAL THR ALA LYS TYR ALA VAL LYS LEU ARG SEQRES 10 B 224 LEU LYS GLY GLU LEU LEU VAL SER GLY ASP GLU TRP MSE SEQRES 11 B 224 ILE ASP TYR VAL TYR ALA GLN LEU ALA SER LEU PHE GLN SEQRES 12 B 224 PRO TYR PRO PRO ALA ASN PHE PRO GLU VAL PHE MSE CYS SEQRES 13 B 224 LYS GLY GLY MSE LYS LEU GLY THR PHE ASP SER PHE ARG SEQRES 14 B 224 ARG THR CYS THR PHE ASP ILE THR TYR ASP ARG SER ASP SEQRES 15 B 224 LEU SER PHE SER GLN LEU TYR PHE ASN LEU PHE ILE ASN SEQRES 16 B 224 LEU ALA GLY GLN LYS ARG GLU ASN ARG VAL ARG LEU ARG SEQRES 17 B 224 ILE ASP LYS GLU SER TYR PHE GLU LEU TYR GLU GLN SER SEQRES 18 B 224 GLU GLU MSE MODRES 3GF6 MSE A 80 MET SELENOMETHIONINE MODRES 3GF6 MSE A 105 MET SELENOMETHIONINE MODRES 3GF6 MSE A 150 MET SELENOMETHIONINE MODRES 3GF6 MSE A 175 MET SELENOMETHIONINE MODRES 3GF6 MSE A 180 MET SELENOMETHIONINE MODRES 3GF6 MSE B 80 MET SELENOMETHIONINE MODRES 3GF6 MSE B 105 MET SELENOMETHIONINE MODRES 3GF6 MSE B 150 MET SELENOMETHIONINE MODRES 3GF6 MSE B 175 MET SELENOMETHIONINE MODRES 3GF6 MSE B 180 MET SELENOMETHIONINE HET MSE A 80 8 HET MSE A 105 8 HET MSE A 150 18 HET MSE A 175 8 HET MSE A 180 13 HET MSE B 80 8 HET MSE B 105 8 HET MSE B 150 13 HET MSE B 175 8 HET MSE B 180 8 HET EDO A 2 4 HET EDO A 3 4 HET EDO A 4 4 HET EDO A 6 4 HET EDO A 7 4 HET EDO B 1 4 HET EDO B 5 4 HET EDO B 8 4 HETNAM MSE SELENOMETHIONINE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 3 EDO 8(C2 H6 O2) FORMUL 11 HOH *664(H2 O) HELIX 1 1 PRO A 115 GLN A 119 5 5 HELIX 2 2 PRO A 166 PHE A 170 5 5 HELIX 3 3 PRO B 115 GLN B 119 5 5 HELIX 4 4 PRO B 166 PHE B 170 5 5 SHEET 1 A 6 ASP A 34 GLU A 36 0 SHEET 2 A 6 VAL A 173 GLY A 178 -1 O CYS A 176 N ILE A 35 SHEET 3 A 6 TRP A 149 ALA A 159 -1 N ALA A 156 O LYS A 177 SHEET 4 A 6 GLN A 207 GLY A 218 -1 O TYR A 209 N ALA A 159 SHEET 5 A 6 LYS A 76 ASP A 82 -1 N ILE A 81 O LEU A 212 SHEET 6 A 6 LYS A 102 MSE A 105 -1 O THR A 104 N MSE A 80 SHEET 1 B 5 ASP A 34 GLU A 36 0 SHEET 2 B 5 VAL A 173 GLY A 178 -1 O CYS A 176 N ILE A 35 SHEET 3 B 5 TRP A 149 ALA A 159 -1 N ALA A 156 O LYS A 177 SHEET 4 B 5 GLN A 207 GLY A 218 -1 O TYR A 209 N ALA A 159 SHEET 5 B 5 TYR A 123 THR A 124 -1 N TYR A 123 O LEU A 208 SHEET 1 C 6 TYR A 60 ALA A 66 0 SHEET 2 C 6 ASN A 223 ILE A 229 -1 O ASN A 223 N ALA A 66 SHEET 3 C 6 TYR A 132 LEU A 143 -1 N LEU A 143 O ARG A 226 SHEET 4 C 6 TYR A 234 GLU A 239 -1 O TYR A 238 N ALA A 133 SHEET 5 C 6 VAL A 49 PHE A 55 -1 N ALA A 52 O LEU A 237 SHEET 6 C 6 GLN A 87 LYS A 88 -1 O GLN A 87 N PHE A 55 SHEET 1 D 5 TYR A 60 ALA A 66 0 SHEET 2 D 5 ASN A 223 ILE A 229 -1 O ASN A 223 N ALA A 66 SHEET 3 D 5 TYR A 132 LEU A 143 -1 N LEU A 143 O ARG A 226 SHEET 4 D 5 THR A 191 LEU A 203 -1 O LEU A 203 N TYR A 132 SHEET 5 D 5 GLY A 183 PHE A 185 -1 N THR A 184 O THR A 193 SHEET 1 E 6 ASP B 34 GLU B 36 0 SHEET 2 E 6 VAL B 173 GLY B 178 -1 O CYS B 176 N ILE B 35 SHEET 3 E 6 TRP B 149 ALA B 159 -1 N ALA B 156 O LYS B 177 SHEET 4 E 6 GLN B 207 GLY B 218 -1 O TYR B 209 N ALA B 159 SHEET 5 E 6 LYS B 76 ASP B 82 -1 N PHE B 79 O ILE B 214 SHEET 6 E 6 LYS B 102 MSE B 105 -1 O THR B 104 N MSE B 80 SHEET 1 F 5 ASP B 34 GLU B 36 0 SHEET 2 F 5 VAL B 173 GLY B 178 -1 O CYS B 176 N ILE B 35 SHEET 3 F 5 TRP B 149 ALA B 159 -1 N ALA B 156 O LYS B 177 SHEET 4 F 5 GLN B 207 GLY B 218 -1 O TYR B 209 N ALA B 159 SHEET 5 F 5 TYR B 123 THR B 124 -1 N TYR B 123 O LEU B 208 SHEET 1 G 6 TYR B 60 ASP B 63 0 SHEET 2 G 6 ARG B 226 ILE B 229 -1 O LEU B 227 N LEU B 62 SHEET 3 G 6 TYR B 132 LEU B 143 -1 N GLU B 141 O ARG B 228 SHEET 4 G 6 TYR B 234 GLU B 239 -1 O TYR B 238 N ALA B 133 SHEET 5 G 6 VAL B 49 PHE B 55 -1 N VAL B 49 O GLU B 239 SHEET 6 G 6 GLN B 87 LYS B 88 -1 O GLN B 87 N PHE B 55 SHEET 1 H 5 TYR B 60 ASP B 63 0 SHEET 2 H 5 ARG B 226 ILE B 229 -1 O LEU B 227 N LEU B 62 SHEET 3 H 5 TYR B 132 LEU B 143 -1 N GLU B 141 O ARG B 228 SHEET 4 H 5 THR B 191 LEU B 203 -1 O ILE B 196 N LEU B 138 SHEET 5 H 5 GLY B 183 PHE B 185 -1 N THR B 184 O THR B 193 SHEET 1 I 2 ALA B 66 GLN B 67 0 SHEET 2 I 2 GLU B 222 ASN B 223 -1 O ASN B 223 N ALA B 66 LINK C PHE A 79 N MSE A 80 1555 1555 1.34 LINK C MSE A 80 N ILE A 81 1555 1555 1.33 LINK C THR A 104 N MSE A 105 1555 1555 1.34 LINK C MSE A 105 N SER A 106 1555 1555 1.34 LINK C TRP A 149 N MSE A 150 1555 1555 1.33 LINK C MSE A 150 N ILE A 151 1555 1555 1.32 LINK C PHE A 174 N MSE A 175 1555 1555 1.34 LINK C MSE A 175 N CYS A 176 1555 1555 1.32 LINK C GLY A 179 N MSE A 180 1555 1555 1.33 LINK C MSE A 180 N LYS A 181 1555 1555 1.33 LINK C PHE B 79 N MSE B 80 1555 1555 1.32 LINK C MSE B 80 N ILE B 81 1555 1555 1.33 LINK C THR B 104 N MSE B 105 1555 1555 1.32 LINK C MSE B 105 N SER B 106 1555 1555 1.34 LINK C TRP B 149 N MSE B 150 1555 1555 1.32 LINK C MSE B 150 N ILE B 151 1555 1555 1.33 LINK C PHE B 174 N MSE B 175 1555 1555 1.33 LINK C MSE B 175 N CYS B 176 1555 1555 1.33 LINK C GLY B 179 N MSE B 180 1555 1555 1.34 LINK C MSE B 180 N LYS B 181 1555 1555 1.33 CISPEP 1 TYR A 165 PRO A 166 0 -2.62 CISPEP 2 TYR B 165 PRO B 166 0 -1.35 SITE 1 AC1 7 ARG A 137 TYR A 234 HOH A 274 HOH A 658 SITE 2 AC1 7 GLY B 146 ASP B 147 GLU B 148 SITE 1 AC2 7 PRO A 171 GLU A 172 SER A 204 HOH A 331 SITE 2 AC2 7 HOH A 334 ASN B 169 HOH B 488 SITE 1 AC3 6 THR A 73 LEU A 74 HOH A 433 HOH A 636 SITE 2 AC3 6 GLY B 99 LYS B 100 SITE 1 AC4 5 VAL A 61 ARG A 226 ARG A 228 HOH A 442 SITE 2 AC4 5 HOH A 609 SITE 1 AC5 7 LEU A 136 THR A 197 TYR A 198 ASP A 199 SITE 2 AC5 7 TYR A 234 HOH A 535 HOH A 658 SITE 1 AC6 7 PHE A 162 PRO A 164 HOH B 16 ASP B 32 SITE 2 AC6 7 VAL B 33 ASP B 34 LYS B 181 SITE 1 AC7 4 LEU B 136 TYR B 198 ASP B 199 TYR B 234 SITE 1 AC8 5 ARG B 137 TYR B 234 HOH B 323 HOH B 446 SITE 2 AC8 5 HOH B 603 CRYST1 62.931 75.541 95.099 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015890 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013238 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010515 0.00000