HEADER CARBOHYDRATE BINDING PROTEIN 26-FEB-09 3GF8 TITLE CRYSTAL STRUCTURE OF PUTATIVE POLYSACCHARIDE BINDING PROTEINS TITLE 2 (DUF1812) (NP_809975.1) FROM BACTEROIDES THETAIOTAOMICRON VPI-5482 AT TITLE 3 2.20 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE POLYSACCHARIDE BINDING PROTEINS (DUF1812); COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES THETAIOTAOMICRON VPI-5482; SOURCE 3 ORGANISM_TAXID: 226186; SOURCE 4 GENE: BT_1062, NP_809975.1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS NP_809975.1, PUTATIVE POLYSACCHARIDE BINDING PROTEINS (DUF1812), KEYWDS 2 STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, KEYWDS 3 PROTEIN STRUCTURE INITIATIVE, PSI-2, LIPOPROTEIN, UNKNOWN FUNCTION, KEYWDS 4 CARBOHYDRATE BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 9 01-FEB-23 3GF8 1 REMARK SEQADV REVDAT 8 22-APR-20 3GF8 1 JRNL REVDAT 7 24-JUL-19 3GF8 1 REMARK LINK REVDAT 6 01-NOV-17 3GF8 1 REMARK REVDAT 5 13-JUL-11 3GF8 1 VERSN REVDAT 4 23-MAR-11 3GF8 1 JRNL REVDAT 3 12-JAN-11 3GF8 1 JRNL REVDAT 2 24-NOV-09 3GF8 1 TITLE REVDAT 1 24-MAR-09 3GF8 0 JRNL AUTH Q.XU,P.ABDUBEK,T.ASTAKHOVA,H.L.AXELROD,C.BAKOLITSA,X.CAI, JRNL AUTH 2 D.CARLTON,C.CHEN,H.J.CHIU,M.CHIU,T.CLAYTON,D.DAS,M.C.DELLER, JRNL AUTH 3 L.DUAN,K.ELLROTT,C.L.FARR,J.FEUERHELM,J.C.GRANT,A.GRZECHNIK, JRNL AUTH 4 G.W.HAN,L.JAROSZEWSKI,K.K.JIN,H.E.KLOCK,M.W.KNUTH,P.KOZBIAL, JRNL AUTH 5 S.S.KRISHNA,A.KUMAR,D.MARCIANO,D.MCMULLAN,M.D.MILLER, JRNL AUTH 6 A.T.MORSE,E.NIGOGHOSSIAN,A.NOPAKUN,L.OKACH,C.PUCKETT, JRNL AUTH 7 R.REYES,N.SEFCOVIC,H.J.TIEN,C.B.TRAME,H.VAN DEN BEDEM, JRNL AUTH 8 D.WEEKES,T.WOOTEN,A.YEH,J.ZHOU,K.O.HODGSON,J.WOOLEY, JRNL AUTH 9 M.A.ELSLIGER,A.M.DEACON,A.GODZIK,S.A.LESLEY,I.A.WILSON JRNL TITL A CONSERVED FOLD FOR FIMBRIAL COMPONENTS REVEALED BY THE JRNL TITL 2 CRYSTAL STRUCTURE OF A PUTATIVE FIMBRIAL ASSEMBLY PROTEIN JRNL TITL 3 (BT1062) FROM BACTEROIDES THETAIOTAOMICRON AT 2.2 A JRNL TITL 4 RESOLUTION JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 66 1281 2010 JRNL REFN ESSN 1744-3091 JRNL PMID 20944223 JRNL DOI 10.1107/S1744309110006548 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH Q.XU,M.SHOJI,S.SHIBATA,M.NAITO,K.SATO,M.A.ELSLIGER, REMARK 1 AUTH 2 J.C.GRANT,H.L.AXELROD,H.J.CHIU,C.L.FARR,L.JAROSZEWSKI, REMARK 1 AUTH 3 M.W.KNUTH,A.M.DEACON,A.GODZIK,S.A.LESLEY,M.A.CURTIS, REMARK 1 AUTH 4 K.NAKAYAMA,I.A.WILSON REMARK 1 TITL A DISTINCT TYPE OF PILUS FROM THE HUMAN MICROBIOME. REMARK 1 REF CELL V. 165 690 2016 REMARK 1 REFN ISSN 1097-4172 REMARK 1 PMID 27062925 REMARK 1 DOI 10.1016/J.CELL.2016.03.016 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0053 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.64 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 23827 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1220 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1647 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2380 REMARK 3 BIN FREE R VALUE SET COUNT : 95 REMARK 3 BIN FREE R VALUE : 0.2780 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2295 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 174 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 35.68 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.22 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.14000 REMARK 3 B22 (A**2) : 1.14000 REMARK 3 B33 (A**2) : -2.29000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.188 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.171 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.110 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.773 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.925 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2378 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1569 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3226 ; 1.525 ; 1.945 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3822 ; 0.848 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 293 ; 6.869 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 121 ;37.062 ;24.628 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 414 ;12.930 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;17.037 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 354 ; 0.083 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2669 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 502 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1424 ; 1.935 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 583 ; 0.510 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2299 ; 3.290 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 954 ; 5.771 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 922 ; 7.771 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 34 A 317 REMARK 3 ORIGIN FOR THE GROUP (A): 8.0735 30.3582 26.3027 REMARK 3 T TENSOR REMARK 3 T11: 0.0105 T22: 0.0122 REMARK 3 T33: 0.0099 T12: 0.0052 REMARK 3 T13: -0.0059 T23: -0.0092 REMARK 3 L TENSOR REMARK 3 L11: 1.3728 L22: 0.7145 REMARK 3 L33: 0.6515 L12: -0.6140 REMARK 3 L13: -0.2446 L23: 0.1385 REMARK 3 S TENSOR REMARK 3 S11: 0.0841 S12: 0.0373 S13: -0.0294 REMARK 3 S21: -0.0422 S22: -0.0837 S23: 0.0603 REMARK 3 S31: 0.0289 S32: 0.0100 S33: -0.0003 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. A MET-INHIBITION PROTOCOL WAS USED FOR REMARK 3 SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE REMARK 3 OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 3. ATOM RECORDS CONTAIN RESIDUAL B FACTORS ONLY. REMARK 3 4. EDO MODELED IS PRESENT IN CRYO SOLUTION. 5. DENSITY FOR REMARK 3 RESIDUES 220-229 ARE POOR. REMARK 4 REMARK 4 3GF8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-FEB-09. REMARK 100 THE DEPOSITION ID IS D_1000051784. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-JAN-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91162,0.97927,0.97915 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : FLAT COLLIMATING MIRROR, TOROID REMARK 200 FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.2.5 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23862 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 29.643 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.09700 REMARK 200 R SYM (I) : 0.09700 REMARK 200 FOR THE DATA SET : 6.7930 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.26 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.65000 REMARK 200 R SYM FOR SHELL (I) : 0.65000 REMARK 200 FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.4M SODIUM CITRATE, 0.1 M HEPES PH REMARK 280 7.5, NANODROP, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 39.57200 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 53.44700 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 53.44700 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 19.78600 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 53.44700 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 53.44700 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 59.35800 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 53.44700 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 53.44700 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 19.78600 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 53.44700 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 53.44700 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 59.35800 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 39.57200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 ALA A 23 REMARK 465 SER A 24 REMARK 465 CYS A 25 REMARK 465 ASP A 26 REMARK 465 SER A 27 REMARK 465 PHE A 28 REMARK 465 ASN A 29 REMARK 465 GLU A 30 REMARK 465 ASP A 31 REMARK 465 LEU A 32 REMARK 465 PRO A 33 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 36 CD NE CZ NH1 NH2 REMARK 470 GLU A 48 CD OE1 OE2 REMARK 470 LYS A 67 CG CD CE NZ REMARK 470 GLU A 90 CD OE1 OE2 REMARK 470 LYS A 224 CG CD CE NZ REMARK 470 ASP A 225 CG OD1 OD2 REMARK 470 THR A 228 OG1 CG2 REMARK 470 LYS A 255 CD CE NZ REMARK 470 ASN A 275 CG OD1 ND2 REMARK 470 GLN A 317 CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASN A 189 NZ LYS A 251 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 58 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 107 -128.20 -131.09 REMARK 500 VAL A 119 -54.78 -123.19 REMARK 500 SER A 198 53.26 -106.29 REMARK 500 LYS A 224 -72.65 -41.99 REMARK 500 MSE A 236 -153.15 -84.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 393038 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT (RESIDUES 23-317) WAS EXPRESSED WITH A PURIFICATION REMARK 999 TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE REMARK 999 LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3GF8 A 23 317 UNP Q8A8V5 Q8A8V5_BACTN 23 317 SEQADV 3GF8 GLY A 0 UNP Q8A8V5 EXPRESSION TAG SEQRES 1 A 296 GLY ALA SER CYS ASP SER PHE ASN GLU ASP LEU PRO GLU SEQRES 2 A 296 CYS ARG LEU SER VAL LYS PHE LYS TYR ASP TYR ASN MSE SEQRES 3 A 296 GLU PHE ALA ASP ALA PHE HIS ALA GLN VAL ASP LYS VAL SEQRES 4 A 296 GLU LEU TYR VAL PHE ASP LYS ASN GLY LYS TYR LEU PHE SEQRES 5 A 296 LYS GLN ALA GLU GLU GLY SER ALA LEU SER THR GLY ASN SEQRES 6 A 296 TYR LEU MSE GLU VAL GLU LEU PRO VAL GLY GLN TYR GLN SEQRES 7 A 296 PHE MSE ALA TRP ALA GLY ALA ARG ASP SER TYR ASP ILE SEQRES 8 A 296 THR SER LEU THR PRO GLY VAL SER THR LEU THR ASP LEU SEQRES 9 A 296 LYS LEU LYS LEU LYS ARG GLU ALA SER LEU ILE ILE ASN SEQRES 10 A 296 LYS ARG MSE GLU THR LEU TRP TYR GLY GLU VAL ILE ASN SEQRES 11 A 296 VAL ASN PHE ASP GLY THR VAL HIS GLN THR GLU THR ILE SEQRES 12 A 296 ASN LEU ILE ARG ASP THR LYS ILE VAL ARG PHE GLY PHE SEQRES 13 A 296 GLN SER TYR THR GLY SER TRP THR LEU ASP MSE ASN ASP SEQRES 14 A 296 TYR ASP TYR GLU ILE ILE GLU SER ASN GLY HIS LEU GLY SEQRES 15 A 296 HIS ASP ASN SER LEU LEU ASP ASP ASP VAL LEU SER PHE SEQRES 16 A 296 ARG PRO TYR TYR MSE GLU GLN LYS ASP PRO ALA THR ALA SEQRES 17 A 296 TYR VAL ASP MSE ASN THR MSE ARG LEU MSE GLU ASP ARG SEQRES 18 A 296 LYS THR ARG LEU VAL LEU THR GLU LYS ALA SER GLY LYS SEQRES 19 A 296 ARG VAL PHE ASP ILE ASN LEU ILE ASP TYR LEU ALA MSE SEQRES 20 A 296 THR ASN ALA GLU GLY LYS ASN LEU SER THR GLN GLU TYR SEQRES 21 A 296 LEU ASP ARG GLN SER ASN TYR HIS ILE ILE PHE PHE LEU SEQRES 22 A 296 SER GLU SER TRP LEU ALA VAL GLN ILE VAL VAL ASN GLY SEQRES 23 A 296 TRP VAL HIS ARG ILE GLN GLU GLU ASN GLN MODRES 3GF8 MSE A 47 MET SELENOMETHIONINE MODRES 3GF8 MSE A 89 MET SELENOMETHIONINE MODRES 3GF8 MSE A 101 MET SELENOMETHIONINE MODRES 3GF8 MSE A 141 MET SELENOMETHIONINE MODRES 3GF8 MSE A 188 MET SELENOMETHIONINE MODRES 3GF8 MSE A 221 MET SELENOMETHIONINE MODRES 3GF8 MSE A 233 MET SELENOMETHIONINE MODRES 3GF8 MSE A 236 MET SELENOMETHIONINE MODRES 3GF8 MSE A 239 MET SELENOMETHIONINE MODRES 3GF8 MSE A 268 MET SELENOMETHIONINE HET MSE A 47 8 HET MSE A 89 8 HET MSE A 101 13 HET MSE A 141 8 HET MSE A 188 8 HET MSE A 221 13 HET MSE A 233 8 HET MSE A 236 8 HET MSE A 239 8 HET MSE A 268 13 HET EDO A 1 4 HETNAM MSE SELENOMETHIONINE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 2 EDO C2 H6 O2 FORMUL 3 HOH *174(H2 O) HELIX 1 1 ALA A 52 VAL A 57 1 6 HELIX 2 2 SER A 80 THR A 84 5 5 HELIX 3 3 THR A 121 ASP A 124 5 4 HELIX 4 4 ASP A 187 ASN A 189 5 3 HELIX 5 5 LEU A 262 MSE A 268 1 7 HELIX 6 6 ASN A 270 LYS A 274 5 5 HELIX 7 7 SER A 277 GLN A 285 1 9 HELIX 8 8 GLN A 313 GLN A 317 5 5 SHEET 1 A 7 TYR A 71 GLU A 78 0 SHEET 2 A 7 LYS A 59 PHE A 65 -1 N LEU A 62 O GLN A 75 SHEET 3 A 7 GLY A 96 ALA A 104 -1 O MSE A 101 N TYR A 63 SHEET 4 A 7 TRP A 145 PHE A 154 -1 O VAL A 152 N TYR A 98 SHEET 5 A 7 GLN A 160 ARG A 168 -1 O ILE A 167 N TYR A 146 SHEET 6 A 7 LEU A 37 LYS A 42 1 N LYS A 40 O GLU A 162 SHEET 7 A 7 MSE A 89 VAL A 91 -1 O MSE A 89 N VAL A 39 SHEET 1 B 3 TYR A 110 ILE A 112 0 SHEET 2 B 3 LYS A 126 LEU A 129 -1 O LYS A 128 N ASP A 111 SHEET 3 B 3 HIS A 201 GLY A 203 -1 O LEU A 202 N LEU A 127 SHEET 1 C 5 ILE A 136 ILE A 137 0 SHEET 2 C 5 LEU A 214 PHE A 216 1 O SER A 215 N ILE A 137 SHEET 3 C 5 TYR A 191 GLU A 197 -1 N ILE A 195 O PHE A 216 SHEET 4 C 5 ARG A 245 GLU A 250 -1 O THR A 249 N ASP A 192 SHEET 5 C 5 ARG A 256 ASN A 261 -1 O PHE A 258 N LEU A 248 SHEET 1 D 6 TYR A 220 GLU A 222 0 SHEET 2 D 6 TYR A 230 THR A 235 -1 O ASP A 232 N TYR A 220 SHEET 3 D 6 LYS A 171 SER A 179 -1 N LYS A 171 O THR A 235 SHEET 4 D 6 ASN A 287 LEU A 294 1 O LEU A 294 N GLN A 178 SHEET 5 D 6 ALA A 300 VAL A 305 -1 O VAL A 301 N PHE A 293 SHEET 6 D 6 TRP A 308 ARG A 311 -1 O HIS A 310 N ILE A 303 LINK C ASN A 46 N MSE A 47 1555 1555 1.34 LINK C MSE A 47 N GLU A 48 1555 1555 1.32 LINK C LEU A 88 N MSE A 89 1555 1555 1.32 LINK C MSE A 89 N GLU A 90 1555 1555 1.32 LINK C PHE A 100 N MSE A 101 1555 1555 1.33 LINK C MSE A 101 N ALA A 102 1555 1555 1.33 LINK C ARG A 140 N MSE A 141 1555 1555 1.33 LINK C MSE A 141 N GLU A 142 1555 1555 1.33 LINK C ASP A 187 N MSE A 188 1555 1555 1.33 LINK C MSE A 188 N ASN A 189 1555 1555 1.31 LINK C TYR A 220 N MSE A 221 1555 1555 1.32 LINK C MSE A 221 N GLU A 222 1555 1555 1.31 LINK C ASP A 232 N MSE A 233 1555 1555 1.33 LINK C MSE A 233 N ASN A 234 1555 1555 1.33 LINK C THR A 235 N MSE A 236 1555 1555 1.33 LINK C MSE A 236 N ARG A 237 1555 1555 1.33 LINK C LEU A 238 N MSE A 239 1555 1555 1.33 LINK C MSE A 239 N GLU A 240 1555 1555 1.33 LINK C ALA A 267 N MSE A 268 1555 1555 1.34 LINK C MSE A 268 N THR A 269 1555 1555 1.33 SITE 1 AC1 2 ILE A 172 ASN A 287 CRYST1 106.894 106.894 79.144 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009355 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009355 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012635 0.00000