HEADER OXIDOREDUCTASE 26-FEB-09 3GFB TITLE L-THREONINE DEHYDROGENASE (TKTDH) FROM THE HYPERTHERMOPHILIC ARCHAEON TITLE 2 THERMOCOCCUS KODAKARAENSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: L-THREONINE 3-DEHYDROGENASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 EC: 1.1.1.103; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOCOCCUS KODAKARENSIS; SOURCE 3 ORGANISM_TAXID: 69014; SOURCE 4 GENE: TDH, TK0916; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 DE3; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-8C KEYWDS ROSSMANN FOLD, CYTOPLASM, METAL-BINDING, NAD, OXIDOREDUCTASE, ZINC EXPDTA X-RAY DIFFRACTION AUTHOR A.BOWYER REVDAT 3 06-SEP-23 3GFB 1 REMARK REVDAT 2 20-OCT-09 3GFB 1 JRNL REVDAT 1 06-OCT-09 3GFB 0 JRNL AUTH A.BOWYER,H.MIKOLAJEK,J.W.STUART,S.P.WOOD,F.JAMIL,N.RASHID, JRNL AUTH 2 M.AKHTAR,J.B.COOPER JRNL TITL STRUCTURE AND FUNCTION OF THE L-THREONINE DEHYDROGENASE JRNL TITL 2 (TKTDH) FROM THE HYPERTHERMOPHILIC ARCHAEON THERMOCOCCUS JRNL TITL 3 KODAKARAENSIS JRNL REF J.STRUCT.BIOL. V. 168 294 2009 JRNL REFN ISSN 1047-8477 JRNL PMID 19616102 JRNL DOI 10.1016/J.JSB.2009.07.011 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 73.92 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 79730 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.220 REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.277 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4215 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5790 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2200 REMARK 3 BIN FREE R VALUE SET COUNT : 281 REMARK 3 BIN FREE R VALUE : 0.2700 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 10672 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 226 REMARK 3 SOLVENT ATOMS : 491 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 42.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.07000 REMARK 3 B22 (A**2) : 0.07000 REMARK 3 B33 (A**2) : -0.14000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.306 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.255 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.187 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.937 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.923 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 11186 ; 0.034 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 15236 ; 2.772 ; 1.992 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1384 ; 9.359 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 436 ;41.661 ;24.587 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1820 ;20.023 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 36 ;18.490 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1692 ; 0.190 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 8332 ; 0.012 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 5447 ; 0.251 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 7234 ; 0.325 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 676 ; 0.217 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 46 ; 0.250 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 15 ; 0.242 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 7208 ; 1.559 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 11136 ; 2.545 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 4770 ; 3.719 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 4100 ; 5.416 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3GFB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-MAR-09. REMARK 100 THE DEPOSITION ID IS D_1000051787. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-DEC-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.931 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 84056 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 73.920 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.14600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.50 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.59000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2DFV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.26 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.05 M SODIUM CITRATE, 2.4 M AMMONIUM REMARK 280 SULFATE, 0.1 M SODIUM/POTASSIUM TARTRATE, 5%(V/V) GLYCEROL AND REMARK 280 0.1 MM ZINC CHLORIDE, PH 5.6, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 135.57150 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 62.24050 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 62.24050 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 203.35725 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 62.24050 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 62.24050 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 67.78575 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 62.24050 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 62.24050 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 203.35725 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 62.24050 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 62.24050 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 67.78575 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 135.57150 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 17750 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 48430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -199.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 GLY A 350 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 GLY B 350 REMARK 465 MET C 1 REMARK 465 ALA C 2 REMARK 465 GLY C 350 REMARK 465 MET D 1 REMARK 465 ALA D 2 REMARK 465 GLY D 350 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG B 204 O3B NAD B 501 1.91 REMARK 500 O1N NAD D 503 O HOH D 444 1.98 REMARK 500 O3 SO4 B 353 O HOH B 527 2.06 REMARK 500 O1N NAD A 500 O HOH A 449 2.06 REMARK 500 SG CYS D 97 SG CYS D 103 2.07 REMARK 500 SG CYS A 97 SG CYS A 103 2.07 REMARK 500 SG CYS B 97 SG CYS B 103 2.09 REMARK 500 O CYS D 97 N LYS D 99 2.12 REMARK 500 O LEU B 254 NZ LYS B 284 2.13 REMARK 500 NH1 ARG D 204 O3B NAD D 503 2.13 REMARK 500 O2N NAD D 503 O HOH D 443 2.14 REMARK 500 OH TYR C 147 OD1 ASP C 315 2.14 REMARK 500 O3D NAD D 503 O HOH D 634 2.17 REMARK 500 OG1 THR C 274 OG1 THR D 274 2.17 REMARK 500 OH TYR C 15 OE1 GLU C 333 2.17 REMARK 500 O HOH A 553 O HOH B 554 2.17 REMARK 500 O HOH B 466 O HOH C 467 2.18 REMARK 500 O5D NAD B 501 O HOH B 441 2.18 REMARK 500 O ILE A 41 O HOH A 561 2.18 REMARK 500 O GLU D 272 O HOH D 610 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR A 147 CB TYR A 147 CG -0.097 REMARK 500 ALA A 249 CA ALA A 249 CB -0.128 REMARK 500 LYS A 311 CE LYS A 311 NZ 0.168 REMARK 500 TYR A 322 CE2 TYR A 322 CD2 0.100 REMARK 500 GLU A 333 CD GLU A 333 OE2 0.072 REMARK 500 GLU B 68 CG GLU B 68 CD 0.093 REMARK 500 PHE B 125 CE1 PHE B 125 CZ 0.128 REMARK 500 GLU B 146 CD GLU B 146 OE1 0.082 REMARK 500 GLU B 238 CB GLU B 238 CG -0.183 REMARK 500 GLU B 238 CG GLU B 238 CD -0.134 REMARK 500 ALA B 246 C ALA B 246 O 0.125 REMARK 500 VAL B 257 CB VAL B 257 CG2 -0.221 REMARK 500 GLU B 287 CD GLU B 287 OE1 0.088 REMARK 500 GLU B 298 CG GLU B 298 CD 0.092 REMARK 500 LYS B 311 CG LYS B 311 CD 0.236 REMARK 500 GLU B 333 CG GLU B 333 CD 0.113 REMARK 500 GLU C 3 CG GLU C 3 CD 0.133 REMARK 500 VAL C 22 CA VAL C 22 CB 0.129 REMARK 500 TYR C 88 CD1 TYR C 88 CE1 0.123 REMARK 500 GLY C 175 C GLY C 175 O 0.096 REMARK 500 GLU C 221 CG GLU C 221 CD 0.118 REMARK 500 GLU C 238 CB GLU C 238 CG -0.215 REMARK 500 GLU C 238 CG GLU C 238 CD -0.093 REMARK 500 GLU C 287 CG GLU C 287 CD 0.118 REMARK 500 VAL D 158 CA VAL D 158 CB 0.136 REMARK 500 GLU D 221 CG GLU D 221 CD 0.095 REMARK 500 GLU D 238 CG GLU D 238 CD -0.143 REMARK 500 GLU D 287 CD GLU D 287 OE2 0.085 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL A 69 CB - CA - C ANGL. DEV. = -12.8 DEGREES REMARK 500 VAL A 85 CB - CA - C ANGL. DEV. = -12.9 DEGREES REMARK 500 PRO A 153 C - N - CA ANGL. DEV. = -11.1 DEGREES REMARK 500 LEU A 154 CA - CB - CG ANGL. DEV. = 16.4 DEGREES REMARK 500 LEU A 154 CB - CG - CD1 ANGL. DEV. = 12.2 DEGREES REMARK 500 ARG A 336 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 CYS B 103 CA - CB - SG ANGL. DEV. = 9.2 DEGREES REMARK 500 GLU B 238 OE1 - CD - OE2 ANGL. DEV. = 13.7 DEGREES REMARK 500 GLU B 238 CG - CD - OE1 ANGL. DEV. = -14.1 DEGREES REMARK 500 ARG B 271 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG B 271 NE - CZ - NH2 ANGL. DEV. = -7.1 DEGREES REMARK 500 LEU C 154 CA - CB - CG ANGL. DEV. = 21.2 DEGREES REMARK 500 ASP C 230 CB - CG - OD2 ANGL. DEV. = -7.7 DEGREES REMARK 500 GLU C 238 OE1 - CD - OE2 ANGL. DEV. = 9.8 DEGREES REMARK 500 LEU C 286 CB - CG - CD1 ANGL. DEV. = -12.5 DEGREES REMARK 500 LEU C 286 CB - CG - CD2 ANGL. DEV. = 11.7 DEGREES REMARK 500 LEU C 306 CB - CG - CD1 ANGL. DEV. = -11.3 DEGREES REMARK 500 ILE D 59 CG1 - CB - CG2 ANGL. DEV. = -15.2 DEGREES REMARK 500 CYS D 111 CA - CB - SG ANGL. DEV. = 10.7 DEGREES REMARK 500 PRO D 153 C - N - CA ANGL. DEV. = -9.7 DEGREES REMARK 500 LEU D 154 CA - CB - CG ANGL. DEV. = 17.1 DEGREES REMARK 500 LEU D 179 CB - CG - CD2 ANGL. DEV. = -17.2 DEGREES REMARK 500 GLU D 238 OE1 - CD - OE2 ANGL. DEV. = 9.8 DEGREES REMARK 500 LEU D 266 CB - CG - CD2 ANGL. DEV. = -11.0 DEGREES REMARK 500 PRO D 270 C - N - CA ANGL. DEV. = 9.5 DEGREES REMARK 500 ARG D 271 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ASP D 315 CB - CG - OD2 ANGL. DEV. = -7.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 14 166.14 -36.60 REMARK 500 LEU A 19 99.40 -66.60 REMARK 500 PRO A 61 156.18 -48.67 REMARK 500 HIS A 67 -13.45 -159.37 REMARK 500 ASP A 82 -32.56 91.96 REMARK 500 CYS A 97 -69.12 21.45 REMARK 500 ARG A 107 58.93 -112.70 REMARK 500 ASN A 113 -129.37 69.92 REMARK 500 THR A 114 -78.73 -22.11 REMARK 500 VAL A 124 11.54 -140.95 REMARK 500 LEU A 150 0.41 -56.24 REMARK 500 ILE A 166 -14.14 -142.27 REMARK 500 ALA A 213 136.27 -30.88 REMARK 500 PHE A 220 -14.00 -41.59 REMARK 500 THR A 232 25.47 -71.93 REMARK 500 ASP A 233 48.51 26.97 REMARK 500 GLU A 272 136.79 -36.99 REMARK 500 TYR B 15 157.85 -44.41 REMARK 500 TRP B 51 38.71 70.96 REMARK 500 ASN B 52 -171.01 -59.46 REMARK 500 HIS B 67 -30.91 -145.25 REMARK 500 CYS B 97 168.87 -40.34 REMARK 500 ASN B 106 27.99 85.79 REMARK 500 ARG B 107 76.52 -103.27 REMARK 500 VAL B 110 60.22 -105.35 REMARK 500 GLN B 112 46.69 -99.07 REMARK 500 ASN B 113 -166.67 -168.63 REMARK 500 ALA B 176 48.62 -107.11 REMARK 500 ARG B 271 139.81 157.97 REMARK 500 GLU B 272 139.50 -26.17 REMARK 500 ASP B 276 79.01 -63.08 REMARK 500 ALA B 337 -9.60 -49.07 REMARK 500 HIS B 348 45.63 -98.48 REMARK 500 PRO C 13 -95.10 -12.36 REMARK 500 ALA C 14 134.93 16.67 REMARK 500 TYR C 15 158.48 -44.83 REMARK 500 ASN C 52 -168.63 -67.49 REMARK 500 HIS C 67 -9.88 -160.44 REMARK 500 GLU C 81 -54.88 62.39 REMARK 500 ILE C 95 90.73 -58.64 REMARK 500 VAL C 96 -90.29 -82.86 REMARK 500 CYS C 97 87.98 124.85 REMARK 500 ARG C 107 77.48 -102.91 REMARK 500 THR C 114 -159.01 -73.46 REMARK 500 LYS C 115 147.81 -25.27 REMARK 500 ALA C 126 150.64 174.32 REMARK 500 PRO C 144 135.06 -38.98 REMARK 500 ASP C 233 51.54 23.05 REMARK 500 HIS C 348 71.47 -119.64 REMARK 500 LEU D 19 106.23 -59.69 REMARK 500 REMARK 500 THIS ENTRY HAS 62 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLN A 112 ASN A 113 149.00 REMARK 500 ASN A 113 THR A 114 -138.19 REMARK 500 HIS A 348 LYS A 349 -142.39 REMARK 500 HIS B 348 LYS B 349 -148.75 REMARK 500 LYS C 12 PRO C 13 149.47 REMARK 500 GLN D 112 ASN D 113 -146.01 REMARK 500 ASN D 113 THR D 114 147.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 351 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 352 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 353 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 354 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 355 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD C 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 351 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 352 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 353 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD D 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 351 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 352 DBREF 3GFB A 1 350 UNP Q5JI69 TDH_PYRKO 1 350 DBREF 3GFB B 1 350 UNP Q5JI69 TDH_PYRKO 1 350 DBREF 3GFB C 1 350 UNP Q5JI69 TDH_PYRKO 1 350 DBREF 3GFB D 1 350 UNP Q5JI69 TDH_PYRKO 1 350 SEQRES 1 A 350 MET ALA GLU LYS MET GLN ALA ILE MET LYS THR LYS PRO SEQRES 2 A 350 ALA TYR GLY ALA GLU LEU VAL GLU VAL ASP VAL PRO LYS SEQRES 3 A 350 PRO GLY PRO GLY GLU VAL LEU ILE LYS VAL LEU ALA THR SEQRES 4 A 350 SER ILE CYS GLY THR ASP LEU HIS ILE TYR GLU TRP ASN SEQRES 5 A 350 GLU TRP ALA GLN SER ARG ILE LYS PRO PRO GLN ILE MET SEQRES 6 A 350 GLY HIS GLU VAL ALA GLY GLU VAL VAL GLU VAL GLY PRO SEQRES 7 A 350 GLY VAL GLU ASP LEU GLN VAL GLY ASP TYR ILE SER VAL SEQRES 8 A 350 GLU THR HIS ILE VAL CYS GLY LYS CYS TYR ALA CYS LYS SEQRES 9 A 350 HIS ASN ARG TYR HIS VAL CYS GLN ASN THR LYS ILE PHE SEQRES 10 A 350 GLY VAL ASP MET ASP GLY VAL PHE ALA HIS TYR ALA ILE SEQRES 11 A 350 VAL PRO ALA LYS ASN ALA TRP LYS ASN PRO LYS ASP MET SEQRES 12 A 350 PRO PRO GLU TYR ALA ALA LEU GLN GLU PRO LEU GLY ASN SEQRES 13 A 350 ALA VAL ASP THR VAL LEU ALA GLY PRO ILE ALA GLY ARG SEQRES 14 A 350 SER THR LEU ILE THR GLY ALA GLY PRO LEU GLY LEU LEU SEQRES 15 A 350 GLY ILE ALA VAL ALA LYS ALA SER GLY ALA TYR PRO VAL SEQRES 16 A 350 ILE VAL SER GLU PRO SER GLU PHE ARG ARG LYS LEU ALA SEQRES 17 A 350 LYS LYS VAL GLY ALA ASP TYR VAL VAL ASN PRO PHE GLU SEQRES 18 A 350 GLU ASP PRO VAL LYS PHE VAL MET ASP ILE THR ASP GLY SEQRES 19 A 350 ALA GLY VAL GLU VAL PHE LEU GLU PHE SER GLY ALA PRO SEQRES 20 A 350 LYS ALA LEU GLU GLN GLY LEU LYS ALA VAL THR PRO GLY SEQRES 21 A 350 GLY ARG VAL SER LEU LEU GLY LEU PHE PRO ARG GLU VAL SEQRES 22 A 350 THR ILE ASP PHE ASN ASN LEU ILE ILE PHE LYS ALA LEU SEQRES 23 A 350 GLU VAL HIS GLY ILE THR GLY ARG HIS LEU TRP GLU THR SEQRES 24 A 350 TRP TYR THR VAL SER SER LEU ILE GLN SER GLY LYS LEU SEQRES 25 A 350 ASN LEU ASP PRO ILE ILE THR HIS LYS TYR LYS GLY PHE SEQRES 26 A 350 ASP LYS PHE GLU GLU ALA PHE GLU LEU MET ARG ALA GLY SEQRES 27 A 350 LYS THR GLY LYS VAL VAL PHE PHE PRO HIS LYS GLY SEQRES 1 B 350 MET ALA GLU LYS MET GLN ALA ILE MET LYS THR LYS PRO SEQRES 2 B 350 ALA TYR GLY ALA GLU LEU VAL GLU VAL ASP VAL PRO LYS SEQRES 3 B 350 PRO GLY PRO GLY GLU VAL LEU ILE LYS VAL LEU ALA THR SEQRES 4 B 350 SER ILE CYS GLY THR ASP LEU HIS ILE TYR GLU TRP ASN SEQRES 5 B 350 GLU TRP ALA GLN SER ARG ILE LYS PRO PRO GLN ILE MET SEQRES 6 B 350 GLY HIS GLU VAL ALA GLY GLU VAL VAL GLU VAL GLY PRO SEQRES 7 B 350 GLY VAL GLU ASP LEU GLN VAL GLY ASP TYR ILE SER VAL SEQRES 8 B 350 GLU THR HIS ILE VAL CYS GLY LYS CYS TYR ALA CYS LYS SEQRES 9 B 350 HIS ASN ARG TYR HIS VAL CYS GLN ASN THR LYS ILE PHE SEQRES 10 B 350 GLY VAL ASP MET ASP GLY VAL PHE ALA HIS TYR ALA ILE SEQRES 11 B 350 VAL PRO ALA LYS ASN ALA TRP LYS ASN PRO LYS ASP MET SEQRES 12 B 350 PRO PRO GLU TYR ALA ALA LEU GLN GLU PRO LEU GLY ASN SEQRES 13 B 350 ALA VAL ASP THR VAL LEU ALA GLY PRO ILE ALA GLY ARG SEQRES 14 B 350 SER THR LEU ILE THR GLY ALA GLY PRO LEU GLY LEU LEU SEQRES 15 B 350 GLY ILE ALA VAL ALA LYS ALA SER GLY ALA TYR PRO VAL SEQRES 16 B 350 ILE VAL SER GLU PRO SER GLU PHE ARG ARG LYS LEU ALA SEQRES 17 B 350 LYS LYS VAL GLY ALA ASP TYR VAL VAL ASN PRO PHE GLU SEQRES 18 B 350 GLU ASP PRO VAL LYS PHE VAL MET ASP ILE THR ASP GLY SEQRES 19 B 350 ALA GLY VAL GLU VAL PHE LEU GLU PHE SER GLY ALA PRO SEQRES 20 B 350 LYS ALA LEU GLU GLN GLY LEU LYS ALA VAL THR PRO GLY SEQRES 21 B 350 GLY ARG VAL SER LEU LEU GLY LEU PHE PRO ARG GLU VAL SEQRES 22 B 350 THR ILE ASP PHE ASN ASN LEU ILE ILE PHE LYS ALA LEU SEQRES 23 B 350 GLU VAL HIS GLY ILE THR GLY ARG HIS LEU TRP GLU THR SEQRES 24 B 350 TRP TYR THR VAL SER SER LEU ILE GLN SER GLY LYS LEU SEQRES 25 B 350 ASN LEU ASP PRO ILE ILE THR HIS LYS TYR LYS GLY PHE SEQRES 26 B 350 ASP LYS PHE GLU GLU ALA PHE GLU LEU MET ARG ALA GLY SEQRES 27 B 350 LYS THR GLY LYS VAL VAL PHE PHE PRO HIS LYS GLY SEQRES 1 C 350 MET ALA GLU LYS MET GLN ALA ILE MET LYS THR LYS PRO SEQRES 2 C 350 ALA TYR GLY ALA GLU LEU VAL GLU VAL ASP VAL PRO LYS SEQRES 3 C 350 PRO GLY PRO GLY GLU VAL LEU ILE LYS VAL LEU ALA THR SEQRES 4 C 350 SER ILE CYS GLY THR ASP LEU HIS ILE TYR GLU TRP ASN SEQRES 5 C 350 GLU TRP ALA GLN SER ARG ILE LYS PRO PRO GLN ILE MET SEQRES 6 C 350 GLY HIS GLU VAL ALA GLY GLU VAL VAL GLU VAL GLY PRO SEQRES 7 C 350 GLY VAL GLU ASP LEU GLN VAL GLY ASP TYR ILE SER VAL SEQRES 8 C 350 GLU THR HIS ILE VAL CYS GLY LYS CYS TYR ALA CYS LYS SEQRES 9 C 350 HIS ASN ARG TYR HIS VAL CYS GLN ASN THR LYS ILE PHE SEQRES 10 C 350 GLY VAL ASP MET ASP GLY VAL PHE ALA HIS TYR ALA ILE SEQRES 11 C 350 VAL PRO ALA LYS ASN ALA TRP LYS ASN PRO LYS ASP MET SEQRES 12 C 350 PRO PRO GLU TYR ALA ALA LEU GLN GLU PRO LEU GLY ASN SEQRES 13 C 350 ALA VAL ASP THR VAL LEU ALA GLY PRO ILE ALA GLY ARG SEQRES 14 C 350 SER THR LEU ILE THR GLY ALA GLY PRO LEU GLY LEU LEU SEQRES 15 C 350 GLY ILE ALA VAL ALA LYS ALA SER GLY ALA TYR PRO VAL SEQRES 16 C 350 ILE VAL SER GLU PRO SER GLU PHE ARG ARG LYS LEU ALA SEQRES 17 C 350 LYS LYS VAL GLY ALA ASP TYR VAL VAL ASN PRO PHE GLU SEQRES 18 C 350 GLU ASP PRO VAL LYS PHE VAL MET ASP ILE THR ASP GLY SEQRES 19 C 350 ALA GLY VAL GLU VAL PHE LEU GLU PHE SER GLY ALA PRO SEQRES 20 C 350 LYS ALA LEU GLU GLN GLY LEU LYS ALA VAL THR PRO GLY SEQRES 21 C 350 GLY ARG VAL SER LEU LEU GLY LEU PHE PRO ARG GLU VAL SEQRES 22 C 350 THR ILE ASP PHE ASN ASN LEU ILE ILE PHE LYS ALA LEU SEQRES 23 C 350 GLU VAL HIS GLY ILE THR GLY ARG HIS LEU TRP GLU THR SEQRES 24 C 350 TRP TYR THR VAL SER SER LEU ILE GLN SER GLY LYS LEU SEQRES 25 C 350 ASN LEU ASP PRO ILE ILE THR HIS LYS TYR LYS GLY PHE SEQRES 26 C 350 ASP LYS PHE GLU GLU ALA PHE GLU LEU MET ARG ALA GLY SEQRES 27 C 350 LYS THR GLY LYS VAL VAL PHE PHE PRO HIS LYS GLY SEQRES 1 D 350 MET ALA GLU LYS MET GLN ALA ILE MET LYS THR LYS PRO SEQRES 2 D 350 ALA TYR GLY ALA GLU LEU VAL GLU VAL ASP VAL PRO LYS SEQRES 3 D 350 PRO GLY PRO GLY GLU VAL LEU ILE LYS VAL LEU ALA THR SEQRES 4 D 350 SER ILE CYS GLY THR ASP LEU HIS ILE TYR GLU TRP ASN SEQRES 5 D 350 GLU TRP ALA GLN SER ARG ILE LYS PRO PRO GLN ILE MET SEQRES 6 D 350 GLY HIS GLU VAL ALA GLY GLU VAL VAL GLU VAL GLY PRO SEQRES 7 D 350 GLY VAL GLU ASP LEU GLN VAL GLY ASP TYR ILE SER VAL SEQRES 8 D 350 GLU THR HIS ILE VAL CYS GLY LYS CYS TYR ALA CYS LYS SEQRES 9 D 350 HIS ASN ARG TYR HIS VAL CYS GLN ASN THR LYS ILE PHE SEQRES 10 D 350 GLY VAL ASP MET ASP GLY VAL PHE ALA HIS TYR ALA ILE SEQRES 11 D 350 VAL PRO ALA LYS ASN ALA TRP LYS ASN PRO LYS ASP MET SEQRES 12 D 350 PRO PRO GLU TYR ALA ALA LEU GLN GLU PRO LEU GLY ASN SEQRES 13 D 350 ALA VAL ASP THR VAL LEU ALA GLY PRO ILE ALA GLY ARG SEQRES 14 D 350 SER THR LEU ILE THR GLY ALA GLY PRO LEU GLY LEU LEU SEQRES 15 D 350 GLY ILE ALA VAL ALA LYS ALA SER GLY ALA TYR PRO VAL SEQRES 16 D 350 ILE VAL SER GLU PRO SER GLU PHE ARG ARG LYS LEU ALA SEQRES 17 D 350 LYS LYS VAL GLY ALA ASP TYR VAL VAL ASN PRO PHE GLU SEQRES 18 D 350 GLU ASP PRO VAL LYS PHE VAL MET ASP ILE THR ASP GLY SEQRES 19 D 350 ALA GLY VAL GLU VAL PHE LEU GLU PHE SER GLY ALA PRO SEQRES 20 D 350 LYS ALA LEU GLU GLN GLY LEU LYS ALA VAL THR PRO GLY SEQRES 21 D 350 GLY ARG VAL SER LEU LEU GLY LEU PHE PRO ARG GLU VAL SEQRES 22 D 350 THR ILE ASP PHE ASN ASN LEU ILE ILE PHE LYS ALA LEU SEQRES 23 D 350 GLU VAL HIS GLY ILE THR GLY ARG HIS LEU TRP GLU THR SEQRES 24 D 350 TRP TYR THR VAL SER SER LEU ILE GLN SER GLY LYS LEU SEQRES 25 D 350 ASN LEU ASP PRO ILE ILE THR HIS LYS TYR LYS GLY PHE SEQRES 26 D 350 ASP LYS PHE GLU GLU ALA PHE GLU LEU MET ARG ALA GLY SEQRES 27 D 350 LYS THR GLY LYS VAL VAL PHE PHE PRO HIS LYS GLY HET NAD A 500 44 HET NAD B 501 44 HET SO4 B 351 5 HET SO4 B 352 5 HET SO4 B 353 5 HET SO4 B 354 5 HET SO4 B 355 5 HET NAD C 502 44 HET SO4 C 351 5 HET SO4 C 352 5 HET SO4 C 353 5 HET NAD D 503 44 HET SO4 D 351 5 HET SO4 D 352 5 HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM SO4 SULFATE ION FORMUL 5 NAD 4(C21 H27 N7 O14 P2) FORMUL 7 SO4 10(O4 S 2-) FORMUL 19 HOH *491(H2 O) HELIX 1 1 CYS A 42 TRP A 51 1 10 HELIX 2 2 ASN A 52 ILE A 59 1 8 HELIX 3 3 CYS A 100 HIS A 105 1 6 HELIX 4 4 PRO A 144 LEU A 150 1 7 HELIX 5 5 LEU A 150 LEU A 162 1 13 HELIX 6 6 GLY A 177 SER A 190 1 14 HELIX 7 7 SER A 201 GLY A 212 1 12 HELIX 8 8 ASN A 218 GLU A 222 5 5 HELIX 9 9 ASP A 223 THR A 232 1 10 HELIX 10 10 ALA A 246 ALA A 256 1 11 HELIX 11 11 ASP A 276 ILE A 281 1 6 HELIX 12 12 TRP A 297 SER A 309 1 13 HELIX 13 13 LYS A 327 ALA A 337 1 11 HELIX 14 14 CYS B 42 TRP B 51 1 10 HELIX 15 15 ASN B 52 ILE B 59 1 8 HELIX 16 16 CYS B 100 HIS B 105 1 6 HELIX 17 17 PRO B 144 ALA B 149 1 6 HELIX 18 18 LEU B 150 LEU B 162 1 13 HELIX 19 19 GLY B 177 SER B 190 1 14 HELIX 20 20 SER B 201 GLY B 212 1 12 HELIX 21 21 ASP B 223 THR B 232 1 10 HELIX 22 22 ALA B 246 ALA B 256 1 11 HELIX 23 23 ASP B 276 ILE B 281 1 6 HELIX 24 24 TRP B 297 GLN B 308 1 12 HELIX 25 25 LYS B 327 ALA B 337 1 11 HELIX 26 26 CYS C 42 GLU C 50 1 9 HELIX 27 27 ASN C 52 ILE C 59 1 8 HELIX 28 28 CYS C 100 HIS C 105 1 6 HELIX 29 29 PRO C 144 ALA C 149 1 6 HELIX 30 30 LEU C 150 LEU C 162 1 13 HELIX 31 31 GLY C 177 SER C 190 1 14 HELIX 32 32 SER C 201 GLY C 212 1 12 HELIX 33 33 ASP C 223 THR C 232 1 10 HELIX 34 34 ALA C 246 ALA C 256 1 11 HELIX 35 35 ASP C 276 ILE C 281 1 6 HELIX 36 36 TRP C 297 SER C 309 1 13 HELIX 37 37 LEU C 314 PRO C 316 5 3 HELIX 38 38 LYS C 327 ALA C 337 1 11 HELIX 39 39 CYS D 42 TRP D 51 1 10 HELIX 40 40 ASN D 52 ILE D 59 1 8 HELIX 41 41 CYS D 100 HIS D 105 1 6 HELIX 42 42 PRO D 144 ALA D 149 1 6 HELIX 43 43 LEU D 150 LEU D 162 1 13 HELIX 44 44 GLY D 177 SER D 190 1 14 HELIX 45 45 SER D 201 GLY D 212 1 12 HELIX 46 46 ASP D 223 THR D 232 1 10 HELIX 47 47 ALA D 246 ALA D 256 1 11 HELIX 48 48 ASP D 276 ILE D 281 1 6 HELIX 49 49 TRP D 297 SER D 309 1 13 HELIX 50 50 LYS D 327 ALA D 337 1 11 SHEET 1 A 3 GLU A 18 ASP A 23 0 SHEET 2 A 3 LYS A 4 LYS A 10 -1 N MET A 5 O VAL A 22 SHEET 3 A 3 GLN A 63 ILE A 64 -1 O GLN A 63 N LYS A 10 SHEET 1 B 5 TYR A 128 PRO A 132 0 SHEET 2 B 5 GLU A 31 ILE A 41 -1 N VAL A 32 O VAL A 131 SHEET 3 B 5 GLU A 68 VAL A 76 -1 O VAL A 74 N LEU A 33 SHEET 4 B 5 TYR A 88 VAL A 91 -1 O ILE A 89 N GLY A 71 SHEET 5 B 5 ALA A 136 LYS A 138 -1 O TRP A 137 N SER A 90 SHEET 1 C 4 TYR A 128 PRO A 132 0 SHEET 2 C 4 GLU A 31 ILE A 41 -1 N VAL A 32 O VAL A 131 SHEET 3 C 4 LYS A 342 PHE A 346 -1 O PHE A 345 N THR A 39 SHEET 4 C 4 ILE A 318 LYS A 323 1 N HIS A 320 O VAL A 344 SHEET 1 D 2 HIS A 94 ILE A 95 0 SHEET 2 D 2 LYS A 115 ILE A 116 -1 N LYS A 115 O ILE A 95 SHEET 1 E12 TYR A 215 VAL A 217 0 SHEET 2 E12 VAL A 195 SER A 198 1 N VAL A 197 O VAL A 217 SHEET 3 E12 THR A 171 THR A 174 1 N ILE A 173 O ILE A 196 SHEET 4 E12 VAL A 237 GLU A 242 1 O LEU A 241 N THR A 174 SHEET 5 E12 VAL A 257 LEU A 265 1 O SER A 264 N GLU A 242 SHEET 6 E12 GLU A 287 GLY A 290 1 O HIS A 289 N VAL A 263 SHEET 7 E12 GLU B 287 GLY B 290 -1 O VAL B 288 N VAL A 288 SHEET 8 E12 VAL B 257 LEU B 265 1 N LEU B 265 O HIS B 289 SHEET 9 E12 VAL B 237 GLU B 242 1 N PHE B 240 O ARG B 262 SHEET 10 E12 THR B 171 THR B 174 1 N LEU B 172 O LEU B 241 SHEET 11 E12 VAL B 195 SER B 198 1 O SER B 198 N ILE B 173 SHEET 12 E12 TYR B 215 VAL B 217 1 O TYR B 215 N VAL B 197 SHEET 1 F 2 VAL A 273 ILE A 275 0 SHEET 2 F 2 VAL B 273 ILE B 275 -1 O VAL B 273 N ILE A 275 SHEET 1 G 3 GLU B 18 ASP B 23 0 SHEET 2 G 3 LYS B 4 LYS B 10 -1 N MET B 5 O VAL B 22 SHEET 3 G 3 GLN B 63 ILE B 64 -1 O GLN B 63 N LYS B 10 SHEET 1 H 5 TYR B 128 PRO B 132 0 SHEET 2 H 5 GLU B 31 SER B 40 -1 N VAL B 32 O VAL B 131 SHEET 3 H 5 GLU B 68 VAL B 76 -1 O GLU B 75 N LEU B 33 SHEET 4 H 5 TYR B 88 VAL B 91 -1 O ILE B 89 N GLY B 71 SHEET 5 H 5 ALA B 136 LYS B 138 -1 O TRP B 137 N SER B 90 SHEET 1 I 4 TYR B 128 PRO B 132 0 SHEET 2 I 4 GLU B 31 SER B 40 -1 N VAL B 32 O VAL B 131 SHEET 3 I 4 LYS B 342 PHE B 346 -1 O PHE B 345 N THR B 39 SHEET 4 I 4 ILE B 318 LYS B 323 1 N TYR B 322 O VAL B 344 SHEET 1 J 2 HIS B 94 VAL B 96 0 SHEET 2 J 2 THR B 114 ILE B 116 -1 O LYS B 115 N ILE B 95 SHEET 1 K 3 GLU C 18 ASP C 23 0 SHEET 2 K 3 LYS C 4 LYS C 10 -1 N MET C 5 O VAL C 22 SHEET 3 K 3 GLN C 63 ILE C 64 -1 O GLN C 63 N LYS C 10 SHEET 1 L 5 TYR C 128 PRO C 132 0 SHEET 2 L 5 GLU C 31 SER C 40 -1 N VAL C 32 O VAL C 131 SHEET 3 L 5 GLU C 68 VAL C 76 -1 O GLU C 72 N LYS C 35 SHEET 4 L 5 TYR C 88 VAL C 91 -1 O ILE C 89 N GLY C 71 SHEET 5 L 5 ALA C 136 LYS C 138 -1 O TRP C 137 N SER C 90 SHEET 1 M 4 TYR C 128 PRO C 132 0 SHEET 2 M 4 GLU C 31 SER C 40 -1 N VAL C 32 O VAL C 131 SHEET 3 M 4 LYS C 342 PHE C 346 -1 O PHE C 345 N THR C 39 SHEET 4 M 4 ILE C 318 LYS C 323 1 N TYR C 322 O PHE C 346 SHEET 1 N12 TYR C 215 VAL C 217 0 SHEET 2 N12 VAL C 195 SER C 198 1 N VAL C 197 O TYR C 215 SHEET 3 N12 THR C 171 THR C 174 1 N THR C 171 O ILE C 196 SHEET 4 N12 VAL C 237 GLU C 242 1 O LEU C 241 N LEU C 172 SHEET 5 N12 VAL C 257 LEU C 265 1 O THR C 258 N VAL C 237 SHEET 6 N12 GLU C 287 GLY C 290 1 O HIS C 289 N LEU C 265 SHEET 7 N12 GLU D 287 GLY D 290 -1 O VAL D 288 N VAL C 288 SHEET 8 N12 VAL D 257 LEU D 265 1 N LEU D 265 O HIS D 289 SHEET 9 N12 VAL D 237 GLU D 242 1 N PHE D 240 O ARG D 262 SHEET 10 N12 THR D 171 THR D 174 1 N LEU D 172 O LEU D 241 SHEET 11 N12 VAL D 195 SER D 198 1 O ILE D 196 N ILE D 173 SHEET 12 N12 TYR D 215 VAL D 217 1 O TYR D 215 N VAL D 197 SHEET 1 O 2 VAL C 273 ILE C 275 0 SHEET 2 O 2 VAL D 273 ILE D 275 -1 O ILE D 275 N VAL C 273 SHEET 1 P 3 GLU D 18 ASP D 23 0 SHEET 2 P 3 LYS D 4 LYS D 10 -1 N MET D 5 O VAL D 22 SHEET 3 P 3 GLN D 63 ILE D 64 -1 O GLN D 63 N LYS D 10 SHEET 1 Q 5 TYR D 128 PRO D 132 0 SHEET 2 Q 5 GLU D 31 SER D 40 -1 N ILE D 34 O ALA D 129 SHEET 3 Q 5 GLU D 68 VAL D 76 -1 O GLU D 75 N LEU D 33 SHEET 4 Q 5 TYR D 88 VAL D 91 -1 O ILE D 89 N GLY D 71 SHEET 5 Q 5 ALA D 136 LYS D 138 -1 O TRP D 137 N SER D 90 SHEET 1 R 4 TYR D 128 PRO D 132 0 SHEET 2 R 4 GLU D 31 SER D 40 -1 N ILE D 34 O ALA D 129 SHEET 3 R 4 LYS D 342 PHE D 346 -1 O PHE D 345 N THR D 39 SHEET 4 R 4 ILE D 318 LYS D 323 1 N TYR D 322 O VAL D 344 SSBOND 1 CYS A 97 CYS A 111 1555 1555 2.04 SSBOND 2 CYS A 103 CYS A 111 1555 1555 2.12 SSBOND 3 CYS B 97 CYS B 111 1555 1555 2.04 SSBOND 4 CYS B 103 CYS B 111 1555 1555 2.08 SSBOND 5 CYS C 103 CYS C 111 1555 1555 2.06 SSBOND 6 CYS D 97 CYS D 111 1555 1555 2.04 SSBOND 7 CYS D 103 CYS D 111 1555 1555 2.06 CISPEP 1 PRO A 61 PRO A 62 0 2.15 CISPEP 2 TYR A 193 PRO A 194 0 -13.12 CISPEP 3 LEU A 296 TRP A 297 0 7.96 CISPEP 4 PRO B 61 PRO B 62 0 10.08 CISPEP 5 ASN B 113 THR B 114 0 -15.35 CISPEP 6 TYR B 193 PRO B 194 0 -3.82 CISPEP 7 LEU B 296 TRP B 297 0 16.89 CISPEP 8 PRO C 61 PRO C 62 0 -9.80 CISPEP 9 TYR C 193 PRO C 194 0 -8.99 CISPEP 10 LEU C 296 TRP C 297 0 2.31 CISPEP 11 PRO D 61 PRO D 62 0 -0.06 CISPEP 12 TYR D 193 PRO D 194 0 -8.43 CISPEP 13 LEU D 296 TRP D 297 0 25.43 SITE 1 AC1 24 GLY A 175 GLY A 177 PRO A 178 LEU A 179 SITE 2 AC1 24 SER A 198 GLU A 199 PRO A 200 ARG A 204 SITE 3 AC1 24 PHE A 243 SER A 244 ALA A 246 ALA A 249 SITE 4 AC1 24 LEU A 266 GLY A 267 LEU A 268 ILE A 291 SITE 5 AC1 24 THR A 292 HOH A 404 HOH A 421 HOH A 422 SITE 6 AC1 24 HOH A 425 HOH A 449 HOH A 562 ILE B 282 SITE 1 AC2 21 ILE A 282 GLY B 177 PRO B 178 LEU B 179 SITE 2 AC2 21 SER B 198 GLU B 199 PRO B 200 ARG B 204 SITE 3 AC2 21 PRO B 219 PHE B 243 SER B 244 ALA B 246 SITE 4 AC2 21 LEU B 266 LEU B 268 ILE B 291 THR B 292 SITE 5 AC2 21 HOH B 412 HOH B 414 HOH B 441 HOH B 446 SITE 6 AC2 21 HOH B 447 SITE 1 AC3 4 LEU B 162 GLY B 164 PRO B 165 PRO C 165 SITE 1 AC4 3 TYR B 147 GLY B 310 LEU B 312 SITE 1 AC5 5 ASP B 223 VAL B 225 GLN B 252 LYS B 255 SITE 2 AC5 5 HOH B 527 SITE 1 AC6 5 PRO B 247 GLU B 251 ARG B 271 VAL B 273 SITE 2 AC6 5 THR B 274 SITE 1 AC7 4 ARG B 271 GLU B 272 PRO C 270 ARG C 271 SITE 1 AC8 26 GLY C 175 GLY C 177 PRO C 178 LEU C 179 SITE 2 AC8 26 GLY C 180 SER C 198 GLU C 199 PRO C 200 SITE 3 AC8 26 ARG C 204 PHE C 243 SER C 244 ALA C 246 SITE 4 AC8 26 ALA C 249 LEU C 266 GLY C 267 LEU C 268 SITE 5 AC8 26 ILE C 291 THR C 292 HOH C 411 HOH C 451 SITE 6 AC8 26 HOH C 453 HOH C 455 HOH C 456 HOH C 457 SITE 7 AC8 26 HOH C 615 ILE D 282 SITE 1 AC9 3 PRO C 78 GLY C 79 GLU C 81 SITE 1 BC1 5 MET C 229 GLY C 234 ALA C 235 LYS C 255 SITE 2 BC1 5 VAL C 257 SITE 1 BC2 6 VAL C 158 ASP C 159 LEU C 162 GLU C 298 SITE 2 BC2 6 THR C 299 THR C 302 SITE 1 BC3 27 ILE C 282 GLY D 175 GLY D 177 PRO D 178 SITE 2 BC3 27 LEU D 179 GLY D 180 SER D 198 GLU D 199 SITE 3 BC3 27 PRO D 200 ARG D 204 PRO D 219 PHE D 243 SITE 4 BC3 27 SER D 244 ALA D 246 LEU D 266 GLY D 267 SITE 5 BC3 27 LEU D 268 ILE D 291 THR D 292 HOH D 360 SITE 6 BC3 27 HOH D 361 HOH D 374 HOH D 419 HOH D 443 SITE 7 BC3 27 HOH D 444 HOH D 633 HOH D 634 SITE 1 BC4 4 ARG A 271 GLU A 272 ARG D 271 HOH D 610 SITE 1 BC5 4 PRO A 270 ARG A 271 ARG D 271 GLU D 272 CRYST1 124.481 124.481 271.143 90.00 90.00 90.00 P 43 21 2 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008033 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008033 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003688 0.00000