HEADER STRUCTURAL PROTEIN 26-FEB-09 3GFH TITLE CRYSTAL STRUCTURE OF EUTL SHELL PROTEIN OF THE BACTERIAL ETHANOLAMINE TITLE 2 MICROMPARTMENT COMPND MOL_ID: 1; COMPND 2 MOLECULE: ETHANOLAMINE UTILIZATION PROTEIN EUTL; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: B2439, EUT-L, EUTL, JW2432, YFFJ; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: K12; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET101 KEYWDS BACTERIAL MIRCOCOMPARTMENT, SHELL PROTEIN, ETHANOLAMINE, STRUCTURAL KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.SAGERMANN,K.NIKOLAKAKIS,A.OHTAKI REVDAT 3 03-APR-24 3GFH 1 REMARK REVDAT 2 21-FEB-24 3GFH 1 REMARK SEQADV REVDAT 1 21-JUL-09 3GFH 0 JRNL AUTH M.SAGERMANN,A.OHTAKI,K.NIKOLAKAKIS JRNL TITL CRYSTAL STRUCTURE OF THE EUTL SHELL PROTEIN OF THE JRNL TITL 2 ETHANOLAMINE AMMONIA LYASE MICROCOMPARTMENT JRNL REF PROC.NATL.ACAD.SCI.USA V. 106 8883 2009 JRNL REFN ISSN 0027-8424 JRNL PMID 19451619 JRNL DOI 10.1073/PNAS.0902324106 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0066 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.65 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 34866 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.223 REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : 0.278 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.800 REMARK 3 FREE R VALUE TEST SET COUNT : 2944 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2503 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2650 REMARK 3 BIN FREE R VALUE SET COUNT : 215 REMARK 3 BIN FREE R VALUE : 0.3340 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3118 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 171 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.34 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -10.85000 REMARK 3 B22 (A**2) : -10.85000 REMARK 3 B33 (A**2) : 21.70000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.034 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.033 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.228 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.162 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.906 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.866 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3200 ; 0.021 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2944 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4383 ; 2.289 ; 1.969 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6820 ; 0.879 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 428 ; 7.130 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 120 ;41.594 ;24.333 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 456 ;22.372 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;25.012 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 520 ; 0.116 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3646 ; 0.012 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 604 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2150 ; 0.935 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 862 ; 0.188 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3437 ; 1.606 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1050 ; 2.632 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 946 ; 4.162 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TWIN DETAILS REMARK 3 NUMBER OF TWIN DOMAINS : 2 REMARK 3 TWIN DOMAIN : 1 REMARK 3 TWIN OPERATOR : H, K, L REMARK 3 TWIN FRACTION : 0.575 REMARK 3 TWIN DOMAIN : 2 REMARK 3 TWIN OPERATOR : K, H, -L REMARK 3 TWIN FRACTION : 0.425 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURE WAS REFINED AGAINST REMARK 3 TWINNED DATA AS PUBLISHED. THE DATA IS HEMOHEDRAL TWINNING WITH REMARK 3 TWINNING OPERATORS: (H,-H-K,-L) AND CORRESPONDING TWINNED REMARK 3 FRACTIONS: 0.575, 0.425. RESIDUES 2-216 COULD BE FITTED RELIABLY REMARK 3 INTO THE ELECTRON DENSITY MAP. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. REMARK 4 REMARK 4 3GFH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-FEB-09. REMARK 100 THE DEPOSITION ID IS D_1000051793. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97946 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : SI-MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AND XDS REMARK 200 DATA SCALING SOFTWARE : AND SCALEIT REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51500 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 19.950 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 85.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.30 REMARK 200 COMPLETENESS FOR SHELL (%) : 74.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.27800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.460 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: MODEL WAS DERIVED FROM FITTING INTO A 3.5 A SAD REMARK 200 DENSITY DERIVED FROM TWO MERCURY ATOMS. REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2M NACL, 100MM PHOSPHATE, MES BUFFER REMARK 280 PH6.5, 5% PEG 400, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7310 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23250 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -47.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 33.69200 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 58.35626 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -33.69200 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 58.35626 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7380 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -48.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 67.38400 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 33.69200 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 58.35626 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ILE A 216 REMARK 465 GLN A 217 REMARK 465 ARG A 218 REMARK 465 ALA A 219 REMARK 465 HIS A 220 REMARK 465 HIS A 221 REMARK 465 HIS A 222 REMARK 465 HIS A 223 REMARK 465 HIS A 224 REMARK 465 HIS A 225 REMARK 465 MET B 1 REMARK 465 ILE B 216 REMARK 465 GLN B 217 REMARK 465 ARG B 218 REMARK 465 ALA B 219 REMARK 465 HIS B 220 REMARK 465 HIS B 221 REMARK 465 HIS B 222 REMARK 465 HIS B 223 REMARK 465 HIS B 224 REMARK 465 HIS B 225 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ILE B 142 O HOH B 268 1.77 REMARK 500 O TYR A 70 O GLU A 182 1.84 REMARK 500 O TYR B 70 O GLU B 182 1.90 REMARK 500 OE1 GLU A 62 OG SER A 134 2.03 REMARK 500 O PRO B 179 O TYR B 185 2.05 REMARK 500 CB PRO A 2 OD1 ASP A 5 2.10 REMARK 500 O CYS B 201 CG2 THR B 205 2.12 REMARK 500 O PRO A 179 O TYR A 185 2.12 REMARK 500 NE2 HIS A 127 O HOH A 290 2.14 REMARK 500 O VAL A 84 O HOH A 234 2.17 REMARK 500 O ALA A 98 OD2 ASP A 101 2.18 REMARK 500 O SER A 137 O HOH A 228 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLU A 27 CD1 LEU A 173 2665 1.09 REMARK 500 OE1 GLU B 27 CD1 LEU B 173 3665 1.38 REMARK 500 CD GLU B 27 CD1 LEU B 173 3665 1.61 REMARK 500 NH1 ARG B 15 CG1 ILE B 211 3665 1.61 REMARK 500 NH1 ARG A 15 CG1 ILE A 211 2665 1.65 REMARK 500 OE2 GLU B 27 CD1 LEU B 173 3665 1.72 REMARK 500 CD GLU A 27 CD1 LEU A 173 2665 1.84 REMARK 500 NH1 ARG A 15 CD1 ILE A 211 2665 1.86 REMARK 500 OE2 GLU B 27 CB LEU B 173 3665 1.88 REMARK 500 OE2 GLU B 27 CG LEU B 173 3665 1.99 REMARK 500 CA LYS A 29 NH2 ARG B 26 3675 2.03 REMARK 500 CZ ARG A 15 CD1 ILE A 211 2665 2.07 REMARK 500 CB ALA B 81 O HOH B 221 3665 2.14 REMARK 500 CZ ARG A 15 CG1 ILE A 211 2665 2.17 REMARK 500 NH1 ARG B 15 CD1 ILE B 211 3665 2.17 REMARK 500 O GLN A 58 O HOH A 273 2765 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 201 CB CYS A 201 SG 0.303 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 23 CB - CG - OD1 ANGL. DEV. = -5.4 DEGREES REMARK 500 PRO A 179 C - N - CA ANGL. DEV. = 13.3 DEGREES REMARK 500 CYS A 201 CA - CB - SG ANGL. DEV. = 9.0 DEGREES REMARK 500 PRO B 79 C - N - CA ANGL. DEV. = 9.2 DEGREES REMARK 500 PRO B 79 C - N - CD ANGL. DEV. = -30.7 DEGREES REMARK 500 ASP B 118 CB - CG - OD2 ANGL. DEV. = -5.7 DEGREES REMARK 500 PRO B 154 C - N - CA ANGL. DEV. = -9.7 DEGREES REMARK 500 PRO B 179 C - N - CA ANGL. DEV. = 19.5 DEGREES REMARK 500 PRO B 179 C - N - CD ANGL. DEV. = -17.5 DEGREES REMARK 500 PRO B 180 C - N - CA ANGL. DEV. = -11.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 3 -92.29 -55.88 REMARK 500 GLU A 83 12.32 -147.96 REMARK 500 ASN A 109 55.42 -158.80 REMARK 500 PRO A 154 170.93 -53.24 REMARK 500 PRO A 179 -70.55 -3.49 REMARK 500 ASN A 184 10.64 87.95 REMARK 500 SER A 193 -150.95 -83.71 REMARK 500 ASN A 214 -84.70 -132.89 REMARK 500 ALA B 3 -98.95 -31.35 REMARK 500 ALA B 13 137.65 177.35 REMARK 500 LYS B 29 48.67 83.51 REMARK 500 ALA B 74 -70.12 -34.36 REMARK 500 SER B 78 -138.09 -87.90 REMARK 500 GLU B 83 18.55 -62.73 REMARK 500 ALA B 140 -172.15 62.67 REMARK 500 ASN B 214 -81.76 -126.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER B 78 PRO B 79 133.92 REMARK 500 GLY B 82 GLU B 83 -143.88 REMARK 500 ALA B 140 GLY B 141 -141.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HG A 800 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HG B 800 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3CGI RELATED DB: PDB REMARK 900 CARBOXYSOMAL SHELL PROTEIN REMARK 900 RELATED ID: 3BN4 RELATED DB: PDB REMARK 900 CARBOXYSOMAL SHELL PROTEIN DBREF 3GFH A 1 219 UNP P76541 EUTL_ECOLI 1 219 DBREF 3GFH B 1 219 UNP P76541 EUTL_ECOLI 1 219 SEQADV 3GFH HIS A 220 UNP P76541 EXPRESSION TAG SEQADV 3GFH HIS A 221 UNP P76541 EXPRESSION TAG SEQADV 3GFH HIS A 222 UNP P76541 EXPRESSION TAG SEQADV 3GFH HIS A 223 UNP P76541 EXPRESSION TAG SEQADV 3GFH HIS A 224 UNP P76541 EXPRESSION TAG SEQADV 3GFH HIS A 225 UNP P76541 EXPRESSION TAG SEQADV 3GFH HIS B 220 UNP P76541 EXPRESSION TAG SEQADV 3GFH HIS B 221 UNP P76541 EXPRESSION TAG SEQADV 3GFH HIS B 222 UNP P76541 EXPRESSION TAG SEQADV 3GFH HIS B 223 UNP P76541 EXPRESSION TAG SEQADV 3GFH HIS B 224 UNP P76541 EXPRESSION TAG SEQADV 3GFH HIS B 225 UNP P76541 EXPRESSION TAG SEQRES 1 A 225 MET PRO ALA LEU ASP LEU ILE ARG PRO SER VAL THR ALA SEQRES 2 A 225 MET ARG VAL ILE ALA SER VAL ASN ALA ASP PHE ALA ARG SEQRES 3 A 225 GLU LEU LYS LEU PRO PRO HIS ILE ARG SER LEU GLY LEU SEQRES 4 A 225 ILE SER ALA ASP SER ASP ASP VAL THR TYR ILE ALA ALA SEQRES 5 A 225 ASP GLU ALA THR LYS GLN ALA MET VAL GLU VAL VAL TYR SEQRES 6 A 225 GLY ARG SER LEU TYR ALA GLY ALA ALA HIS GLY PRO SER SEQRES 7 A 225 PRO THR ALA GLY GLU VAL LEU ILE MET LEU GLY GLY PRO SEQRES 8 A 225 ASN PRO ALA GLU VAL ARG ALA GLY LEU ASP ALA MET ILE SEQRES 9 A 225 ALA HIS ILE GLU ASN GLY ALA ALA PHE GLN TRP ALA ASN SEQRES 10 A 225 ASP ALA GLN ASP THR ALA PHE LEU ALA HIS VAL VAL SER SEQRES 11 A 225 ARG THR GLY SER TYR LEU SER SER THR ALA GLY ILE THR SEQRES 12 A 225 LEU GLY ASP PRO MET ALA TYR LEU VAL ALA PRO PRO LEU SEQRES 13 A 225 GLU ALA THR TYR GLY ILE ASP ALA ALA LEU LYS SER ALA SEQRES 14 A 225 ASP VAL GLN LEU ALA THR TYR VAL PRO PRO PRO SER GLU SEQRES 15 A 225 THR ASN TYR SER ALA ALA PHE LEU THR GLY SER GLN ALA SEQRES 16 A 225 ALA CYS LYS ALA ALA CYS ASN ALA PHE THR ASP ALA VAL SEQRES 17 A 225 LEU GLU ILE ALA ARG ASN PRO ILE GLN ARG ALA HIS HIS SEQRES 18 A 225 HIS HIS HIS HIS SEQRES 1 B 225 MET PRO ALA LEU ASP LEU ILE ARG PRO SER VAL THR ALA SEQRES 2 B 225 MET ARG VAL ILE ALA SER VAL ASN ALA ASP PHE ALA ARG SEQRES 3 B 225 GLU LEU LYS LEU PRO PRO HIS ILE ARG SER LEU GLY LEU SEQRES 4 B 225 ILE SER ALA ASP SER ASP ASP VAL THR TYR ILE ALA ALA SEQRES 5 B 225 ASP GLU ALA THR LYS GLN ALA MET VAL GLU VAL VAL TYR SEQRES 6 B 225 GLY ARG SER LEU TYR ALA GLY ALA ALA HIS GLY PRO SER SEQRES 7 B 225 PRO THR ALA GLY GLU VAL LEU ILE MET LEU GLY GLY PRO SEQRES 8 B 225 ASN PRO ALA GLU VAL ARG ALA GLY LEU ASP ALA MET ILE SEQRES 9 B 225 ALA HIS ILE GLU ASN GLY ALA ALA PHE GLN TRP ALA ASN SEQRES 10 B 225 ASP ALA GLN ASP THR ALA PHE LEU ALA HIS VAL VAL SER SEQRES 11 B 225 ARG THR GLY SER TYR LEU SER SER THR ALA GLY ILE THR SEQRES 12 B 225 LEU GLY ASP PRO MET ALA TYR LEU VAL ALA PRO PRO LEU SEQRES 13 B 225 GLU ALA THR TYR GLY ILE ASP ALA ALA LEU LYS SER ALA SEQRES 14 B 225 ASP VAL GLN LEU ALA THR TYR VAL PRO PRO PRO SER GLU SEQRES 15 B 225 THR ASN TYR SER ALA ALA PHE LEU THR GLY SER GLN ALA SEQRES 16 B 225 ALA CYS LYS ALA ALA CYS ASN ALA PHE THR ASP ALA VAL SEQRES 17 B 225 LEU GLU ILE ALA ARG ASN PRO ILE GLN ARG ALA HIS HIS SEQRES 18 B 225 HIS HIS HIS HIS HET HG A 800 1 HET HG B 800 1 HETNAM HG MERCURY (II) ION FORMUL 3 HG 2(HG 2+) FORMUL 5 HOH *171(H2 O) HELIX 1 1 ASN A 21 LEU A 28 1 8 HELIX 2 2 SER A 44 ALA A 59 1 16 HELIX 3 3 GLY A 72 GLY A 76 5 5 HELIX 4 4 ASN A 92 GLU A 108 1 17 HELIX 5 5 PRO A 154 ALA A 169 1 16 HELIX 6 6 LYS A 198 ASN A 214 1 17 HELIX 7 7 ASN B 21 LYS B 29 1 9 HELIX 8 8 SER B 44 ALA B 59 1 16 HELIX 9 9 GLY B 72 GLY B 76 5 5 HELIX 10 10 ASN B 92 ASN B 109 1 18 HELIX 11 11 PRO B 154 SER B 168 1 15 HELIX 12 12 LYS B 198 ASN B 214 1 17 SHEET 1 A 6 LEU A 6 ILE A 7 0 SHEET 2 A 6 PHE A 113 TRP A 115 -1 O PHE A 113 N ILE A 7 SHEET 3 A 6 ALA A 123 VAL A 129 -1 O PHE A 124 N GLN A 114 SHEET 4 A 6 MET A 148 ALA A 153 -1 O MET A 148 N VAL A 129 SHEET 5 A 6 SER A 186 THR A 191 -1 O ALA A 188 N LEU A 151 SHEET 6 A 6 GLN A 172 VAL A 177 -1 N ALA A 174 O PHE A 189 SHEET 1 B 4 VAL A 11 ILE A 17 0 SHEET 2 B 4 SER A 36 ALA A 42 -1 O LEU A 39 N ARG A 15 SHEET 3 B 4 VAL A 84 GLY A 90 -1 O LEU A 88 N GLY A 38 SHEET 4 B 4 GLU A 62 SER A 68 -1 N GLU A 62 O GLY A 89 SHEET 1 C 4 VAL B 11 ILE B 17 0 SHEET 2 C 4 SER B 36 ALA B 42 -1 O LEU B 37 N ILE B 17 SHEET 3 C 4 VAL B 84 GLY B 90 -1 O ILE B 86 N ILE B 40 SHEET 4 C 4 GLU B 62 SER B 68 -1 N GLU B 62 O GLY B 89 SHEET 1 D 5 GLN B 114 TRP B 115 0 SHEET 2 D 5 ALA B 123 VAL B 129 -1 O PHE B 124 N GLN B 114 SHEET 3 D 5 MET B 148 ALA B 153 -1 O MET B 148 N VAL B 129 SHEET 4 D 5 SER B 186 THR B 191 -1 O ALA B 188 N LEU B 151 SHEET 5 D 5 GLN B 172 VAL B 177 -1 N ALA B 174 O PHE B 189 SITE 1 AC1 4 VAL A 128 ALA A 149 CYS A 197 CYS A 201 SITE 1 AC2 5 HIS B 127 VAL B 128 ALA B 149 CYS B 197 SITE 2 AC2 5 CYS B 201 CRYST1 67.384 67.384 79.661 90.00 90.00 120.00 P 3 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014840 0.008568 0.000000 0.00000 SCALE2 0.000000 0.017136 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012553 0.00000