HEADER PROTEIN TRANSPORT, ENDOCYTOSIS 02-MAR-09 3GGZ TITLE CRYSTAL STRUCTURE OF S.CEREVISIAE IST1 N-TERMINAL DOMAIN IN COMPLEX TITLE 2 WITH DID2 MIM MOTIF COMPND MOL_ID: 1; COMPND 2 MOLECULE: INCREASED SODIUM TOLERANCE PROTEIN 1; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: N-TERMINAL DOMAIN, UNP RESIDUES 1-192; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: VACUOLAR PROTEIN-SORTING-ASSOCIATED PROTEIN 46; COMPND 8 CHAIN: E, F, G, H; COMPND 9 FRAGMENT: MIM MOTIF, UNP RESIDUES 176-204; COMPND 10 SYNONYM: CHARGED MULTIVESICULAR BODY PROTEIN 1, DOA4-INDEPENDENT COMPND 11 DEGRADATION PROTEIN 2, FIFTY TWO INHIBITOR 1; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BREWER'S YEAST,LAGER BEER YEAST,YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: IST1, N0809, YNL265C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 12 ORGANISM_COMMON: BREWER'S YEAST,LAGER BEER YEAST,YEAST; SOURCE 13 ORGANISM_TAXID: 4932; SOURCE 14 GENE: CHM1, DID2, FTI1, VPS46, YKR035W-A; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 17 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 18 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS NOVEL MIM BINDING MODE, PHOSPHOPROTEIN, COILED COIL, ENDOSOME, KEYWDS 2 MEMBRANE, PROTEIN TRANSPORT, TRANSPORT, ENDOCYTOSIS EXPDTA X-RAY DIFFRACTION AUTHOR J.XIAO,Z.XU REVDAT 3 21-FEB-24 3GGZ 1 REMARK REVDAT 2 01-NOV-17 3GGZ 1 REMARK REVDAT 1 08-SEP-09 3GGZ 0 JRNL AUTH J.XIAO,X.W.CHEN,B.A.DAVIES,A.R.SALTIEL,D.J.KATZMANN,Z.XU JRNL TITL STRUCTURAL BASIS OF IST1 FUNCTION AND IST1-DID2 INTERACTION JRNL TITL 2 IN THE MULTIVESICULAR BODY PATHWAY AND CYTOKINESIS. JRNL REF MOLECULAR BIOLOGY OF THE V. 20 3514 2009 JRNL REF 2 CELL JRNL REFN ISSN 1059-1524 JRNL PMID 19477918 JRNL DOI 10.1091/MBC.E09-05-0403 REMARK 2 REMARK 2 RESOLUTION. 3.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.2 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.03 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 5432034.240 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 17200 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.289 REMARK 3 FREE R VALUE : 0.307 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 869 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.010 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 4.04 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2658 REMARK 3 BIN R VALUE (WORKING SET) : 0.3970 REMARK 3 BIN FREE R VALUE : 0.3670 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.40 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 151 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.030 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6595 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 146.1 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 9.17000 REMARK 3 B22 (A**2) : 9.17000 REMARK 3 B33 (A**2) : -18.34000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.69 REMARK 3 ESD FROM SIGMAA (A) : 0.71 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.71 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.69 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.011 REMARK 3 BOND ANGLES (DEGREES) : 1.200 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 19.40 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.930 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.250 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.280 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.810 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.680 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.35 REMARK 3 BSOL : 104.9 REMARK 3 REMARK 3 NCS MODEL : CONSTR REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3GGZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-MAR-09. REMARK 100 THE DEPOSITION ID IS D_1000051847. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-APR-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17219 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : 0.09100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.6170 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.87 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.20 REMARK 200 R MERGE FOR SHELL (I) : 0.65800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM CITRATE, VAPOR DIFFUSION, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z+1/2 REMARK 290 4555 Y,-X,Z+1/2 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z+1/2 REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 60.77950 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 60.77950 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 60.77950 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 60.77950 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11370 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ASN A 189 REMARK 465 SER A 190 REMARK 465 LEU A 191 REMARK 465 SER A 192 REMARK 465 SER A 193 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 PRO B 3 REMARK 465 SER B 4 REMARK 465 LEU B 191 REMARK 465 SER B 192 REMARK 465 SER B 193 REMARK 465 MET C 1 REMARK 465 ALA C 2 REMARK 465 PRO C 3 REMARK 465 SER C 4 REMARK 465 LEU C 187 REMARK 465 GLU C 188 REMARK 465 ASN C 189 REMARK 465 SER C 190 REMARK 465 LEU C 191 REMARK 465 SER C 192 REMARK 465 SER C 193 REMARK 465 MET D 1 REMARK 465 ALA D 2 REMARK 465 PRO D 3 REMARK 465 SER D 4 REMARK 465 SER D 193 REMARK 465 ASN E 176 REMARK 465 VAL E 177 REMARK 465 PRO E 178 REMARK 465 GLU E 179 REMARK 465 ILE E 180 REMARK 465 LYS E 181 REMARK 465 ALA E 182 REMARK 465 LYS E 183 REMARK 465 GLU E 184 REMARK 465 VAL E 185 REMARK 465 ASN E 186 REMARK 465 VAL E 187 REMARK 465 ASN F 176 REMARK 465 VAL F 177 REMARK 465 PRO F 178 REMARK 465 GLU F 179 REMARK 465 ILE F 180 REMARK 465 LYS F 181 REMARK 465 ALA F 182 REMARK 465 LYS F 183 REMARK 465 GLU F 184 REMARK 465 VAL F 185 REMARK 465 ASN F 186 REMARK 465 VAL F 187 REMARK 465 ASN G 176 REMARK 465 VAL G 177 REMARK 465 PRO G 178 REMARK 465 GLU G 179 REMARK 465 ILE G 180 REMARK 465 LYS G 181 REMARK 465 ALA G 182 REMARK 465 LYS G 183 REMARK 465 GLU G 184 REMARK 465 VAL G 185 REMARK 465 ASN G 186 REMARK 465 VAL G 187 REMARK 465 ASP G 188 REMARK 465 ASN H 176 REMARK 465 VAL H 177 REMARK 465 PRO H 178 REMARK 465 GLU H 179 REMARK 465 ILE H 180 REMARK 465 LYS H 181 REMARK 465 ALA H 182 REMARK 465 LYS H 183 REMARK 465 GLU H 184 REMARK 465 VAL H 185 REMARK 465 ASN H 186 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PRO A 3 CG CD REMARK 470 SER A 4 OG REMARK 470 MET A 5 CG SD CE REMARK 470 MET B 5 CG SD CE REMARK 470 MET C 5 CG SD CE REMARK 470 MET D 5 CG SD CE REMARK 470 ASP E 188 CG OD1 OD2 REMARK 470 ASP F 188 CG OD1 OD2 REMARK 470 VAL H 187 CG1 CG2 REMARK 470 ASP H 188 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 7 C - N - CA ANGL. DEV. = 9.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 5 62.63 -105.18 REMARK 500 THR A 9 -32.30 -38.93 REMARK 500 LEU A 46 12.93 -68.98 REMARK 500 ASN A 48 11.37 51.25 REMARK 500 HIS A 54 -78.03 -74.66 REMARK 500 TYR A 76 -37.35 -37.62 REMARK 500 ASP A 89 49.76 -96.14 REMARK 500 SER A 91 -10.46 -148.63 REMARK 500 GLN A 95 -70.72 -56.11 REMARK 500 VAL A 97 -71.85 -55.13 REMARK 500 LYS A 98 45.35 -98.17 REMARK 500 GLU A 99 -30.63 -154.49 REMARK 500 LEU A 131 11.50 -68.86 REMARK 500 ILE A 136 -97.79 -125.70 REMARK 500 HIS A 148 55.47 17.26 REMARK 500 ILE A 155 -77.88 -70.72 REMARK 500 ILE A 156 -31.59 -38.99 REMARK 500 LYS A 178 1.74 -68.44 REMARK 500 ASP A 181 -119.01 135.54 REMARK 500 VAL A 182 154.18 60.69 REMARK 500 ILE B 6 44.99 -166.52 REMARK 500 PRO B 7 146.39 -16.71 REMARK 500 ASN B 48 7.80 49.46 REMARK 500 HIS B 54 -76.10 -74.96 REMARK 500 ARG B 83 20.75 -73.69 REMARK 500 ASP B 89 48.50 -95.61 REMARK 500 SER B 91 -8.91 -149.55 REMARK 500 VAL B 97 -71.67 -56.14 REMARK 500 LYS B 98 46.17 -98.62 REMARK 500 GLU B 99 -30.58 -156.23 REMARK 500 ILE B 116 -72.03 -39.31 REMARK 500 LYS B 123 -36.66 -37.75 REMARK 500 LEU B 131 13.28 -68.30 REMARK 500 ILE B 136 -97.87 -124.72 REMARK 500 HIS B 148 56.30 18.97 REMARK 500 ILE B 155 -77.21 -73.16 REMARK 500 ASP B 181 75.05 60.13 REMARK 500 PRO B 183 129.49 -37.47 REMARK 500 THR C 9 -31.97 -39.87 REMARK 500 ASN C 48 9.50 48.59 REMARK 500 ASP C 89 49.02 -95.17 REMARK 500 SER C 91 -15.87 -150.04 REMARK 500 VAL C 97 -74.38 -55.53 REMARK 500 LYS C 98 44.79 -95.70 REMARK 500 GLU C 99 -29.22 -154.48 REMARK 500 LYS C 123 -38.65 -38.67 REMARK 500 LEU C 131 6.67 -65.06 REMARK 500 ILE C 136 -96.74 -127.84 REMARK 500 HIS C 148 53.36 20.16 REMARK 500 PRO C 152 146.81 -38.95 REMARK 500 REMARK 500 THIS ENTRY HAS 88 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3GGY RELATED DB: PDB DBREF 3GGZ A 1 193 UNP P53843 IST1_YEAST 1 193 DBREF 3GGZ B 1 193 UNP P53843 IST1_YEAST 1 193 DBREF 3GGZ C 1 193 UNP P53843 IST1_YEAST 1 193 DBREF 3GGZ D 1 193 UNP P53843 IST1_YEAST 1 193 DBREF 3GGZ E 176 204 UNP P69771 DID2_YEAST 176 204 DBREF 3GGZ F 176 204 UNP P69771 DID2_YEAST 176 204 DBREF 3GGZ G 176 204 UNP P69771 DID2_YEAST 176 204 DBREF 3GGZ H 176 204 UNP P69771 DID2_YEAST 176 204 SEQRES 1 A 193 MET ALA PRO SER MET ILE PRO PHE THR ILE LYS LEU LYS SEQRES 2 A 193 THR CYS LEU LYS MET CYS ILE GLN ARG LEU ARG TYR ALA SEQRES 3 A 193 GLN GLU LYS GLN GLN ALA ILE ALA LYS GLN SER ARG ARG SEQRES 4 A 193 GLN VAL ALA GLN LEU LEU LEU THR ASN LYS GLU GLN LYS SEQRES 5 A 193 ALA HIS TYR ARG VAL GLU THR LEU ILE HIS ASP ASP ILE SEQRES 6 A 193 HIS ILE GLU LEU LEU GLU ILE LEU GLU LEU TYR CYS GLU SEQRES 7 A 193 LEU LEU LEU ALA ARG VAL GLN VAL ILE ASN ASP ILE SER SEQRES 8 A 193 THR GLU GLU GLN LEU VAL LYS GLU HIS MET ASP ASP GLY SEQRES 9 A 193 ILE ASN GLU ALA ILE ARG SER LEU ILE TYR ALA ILE LEU SEQRES 10 A 193 PHE VAL ASP GLU VAL LYS GLU LEU SER GLN LEU LYS ASP SEQRES 11 A 193 LEU MET ALA TRP LYS ILE ASN VAL GLU PHE VAL ASN GLY SEQRES 12 A 193 VAL ILE ALA ASP HIS ILE ASP VAL PRO GLU LYS ILE ILE SEQRES 13 A 193 LYS LYS CYS SER PRO SER VAL PRO LYS GLU GLU LEU VAL SEQRES 14 A 193 ASP LEU TYR LEU LYS GLU ILE ALA LYS THR TYR ASP VAL SEQRES 15 A 193 PRO TYR SER LYS LEU GLU ASN SER LEU SER SER SEQRES 1 B 193 MET ALA PRO SER MET ILE PRO PHE THR ILE LYS LEU LYS SEQRES 2 B 193 THR CYS LEU LYS MET CYS ILE GLN ARG LEU ARG TYR ALA SEQRES 3 B 193 GLN GLU LYS GLN GLN ALA ILE ALA LYS GLN SER ARG ARG SEQRES 4 B 193 GLN VAL ALA GLN LEU LEU LEU THR ASN LYS GLU GLN LYS SEQRES 5 B 193 ALA HIS TYR ARG VAL GLU THR LEU ILE HIS ASP ASP ILE SEQRES 6 B 193 HIS ILE GLU LEU LEU GLU ILE LEU GLU LEU TYR CYS GLU SEQRES 7 B 193 LEU LEU LEU ALA ARG VAL GLN VAL ILE ASN ASP ILE SER SEQRES 8 B 193 THR GLU GLU GLN LEU VAL LYS GLU HIS MET ASP ASP GLY SEQRES 9 B 193 ILE ASN GLU ALA ILE ARG SER LEU ILE TYR ALA ILE LEU SEQRES 10 B 193 PHE VAL ASP GLU VAL LYS GLU LEU SER GLN LEU LYS ASP SEQRES 11 B 193 LEU MET ALA TRP LYS ILE ASN VAL GLU PHE VAL ASN GLY SEQRES 12 B 193 VAL ILE ALA ASP HIS ILE ASP VAL PRO GLU LYS ILE ILE SEQRES 13 B 193 LYS LYS CYS SER PRO SER VAL PRO LYS GLU GLU LEU VAL SEQRES 14 B 193 ASP LEU TYR LEU LYS GLU ILE ALA LYS THR TYR ASP VAL SEQRES 15 B 193 PRO TYR SER LYS LEU GLU ASN SER LEU SER SER SEQRES 1 C 193 MET ALA PRO SER MET ILE PRO PHE THR ILE LYS LEU LYS SEQRES 2 C 193 THR CYS LEU LYS MET CYS ILE GLN ARG LEU ARG TYR ALA SEQRES 3 C 193 GLN GLU LYS GLN GLN ALA ILE ALA LYS GLN SER ARG ARG SEQRES 4 C 193 GLN VAL ALA GLN LEU LEU LEU THR ASN LYS GLU GLN LYS SEQRES 5 C 193 ALA HIS TYR ARG VAL GLU THR LEU ILE HIS ASP ASP ILE SEQRES 6 C 193 HIS ILE GLU LEU LEU GLU ILE LEU GLU LEU TYR CYS GLU SEQRES 7 C 193 LEU LEU LEU ALA ARG VAL GLN VAL ILE ASN ASP ILE SER SEQRES 8 C 193 THR GLU GLU GLN LEU VAL LYS GLU HIS MET ASP ASP GLY SEQRES 9 C 193 ILE ASN GLU ALA ILE ARG SER LEU ILE TYR ALA ILE LEU SEQRES 10 C 193 PHE VAL ASP GLU VAL LYS GLU LEU SER GLN LEU LYS ASP SEQRES 11 C 193 LEU MET ALA TRP LYS ILE ASN VAL GLU PHE VAL ASN GLY SEQRES 12 C 193 VAL ILE ALA ASP HIS ILE ASP VAL PRO GLU LYS ILE ILE SEQRES 13 C 193 LYS LYS CYS SER PRO SER VAL PRO LYS GLU GLU LEU VAL SEQRES 14 C 193 ASP LEU TYR LEU LYS GLU ILE ALA LYS THR TYR ASP VAL SEQRES 15 C 193 PRO TYR SER LYS LEU GLU ASN SER LEU SER SER SEQRES 1 D 193 MET ALA PRO SER MET ILE PRO PHE THR ILE LYS LEU LYS SEQRES 2 D 193 THR CYS LEU LYS MET CYS ILE GLN ARG LEU ARG TYR ALA SEQRES 3 D 193 GLN GLU LYS GLN GLN ALA ILE ALA LYS GLN SER ARG ARG SEQRES 4 D 193 GLN VAL ALA GLN LEU LEU LEU THR ASN LYS GLU GLN LYS SEQRES 5 D 193 ALA HIS TYR ARG VAL GLU THR LEU ILE HIS ASP ASP ILE SEQRES 6 D 193 HIS ILE GLU LEU LEU GLU ILE LEU GLU LEU TYR CYS GLU SEQRES 7 D 193 LEU LEU LEU ALA ARG VAL GLN VAL ILE ASN ASP ILE SER SEQRES 8 D 193 THR GLU GLU GLN LEU VAL LYS GLU HIS MET ASP ASP GLY SEQRES 9 D 193 ILE ASN GLU ALA ILE ARG SER LEU ILE TYR ALA ILE LEU SEQRES 10 D 193 PHE VAL ASP GLU VAL LYS GLU LEU SER GLN LEU LYS ASP SEQRES 11 D 193 LEU MET ALA TRP LYS ILE ASN VAL GLU PHE VAL ASN GLY SEQRES 12 D 193 VAL ILE ALA ASP HIS ILE ASP VAL PRO GLU LYS ILE ILE SEQRES 13 D 193 LYS LYS CYS SER PRO SER VAL PRO LYS GLU GLU LEU VAL SEQRES 14 D 193 ASP LEU TYR LEU LYS GLU ILE ALA LYS THR TYR ASP VAL SEQRES 15 D 193 PRO TYR SER LYS LEU GLU ASN SER LEU SER SER SEQRES 1 E 29 ASN VAL PRO GLU ILE LYS ALA LYS GLU VAL ASN VAL ASP SEQRES 2 E 29 ASP GLU LYS GLU ASP LYS LEU ALA GLN ARG LEU ARG ALA SEQRES 3 E 29 LEU ARG GLY SEQRES 1 F 29 ASN VAL PRO GLU ILE LYS ALA LYS GLU VAL ASN VAL ASP SEQRES 2 F 29 ASP GLU LYS GLU ASP LYS LEU ALA GLN ARG LEU ARG ALA SEQRES 3 F 29 LEU ARG GLY SEQRES 1 G 29 ASN VAL PRO GLU ILE LYS ALA LYS GLU VAL ASN VAL ASP SEQRES 2 G 29 ASP GLU LYS GLU ASP LYS LEU ALA GLN ARG LEU ARG ALA SEQRES 3 G 29 LEU ARG GLY SEQRES 1 H 29 ASN VAL PRO GLU ILE LYS ALA LYS GLU VAL ASN VAL ASP SEQRES 2 H 29 ASP GLU LYS GLU ASP LYS LEU ALA GLN ARG LEU ARG ALA SEQRES 3 H 29 LEU ARG GLY HELIX 1 1 PRO A 7 LEU A 46 1 40 HELIX 2 2 LYS A 49 ARG A 83 1 35 HELIX 3 3 ARG A 83 ASN A 88 1 6 HELIX 4 4 THR A 92 LYS A 98 1 7 HELIX 5 5 GLY A 104 VAL A 119 1 16 HELIX 6 6 GLU A 124 TRP A 134 1 11 HELIX 7 7 ASN A 137 ALA A 146 1 10 HELIX 8 8 PRO A 152 SER A 160 1 9 HELIX 9 9 LYS A 165 ASP A 181 1 17 HELIX 10 10 PRO B 7 LEU B 46 1 40 HELIX 11 11 LYS B 49 ARG B 83 1 35 HELIX 12 12 ARG B 83 ASN B 88 1 6 HELIX 13 13 THR B 92 LYS B 98 1 7 HELIX 14 14 GLY B 104 VAL B 119 1 16 HELIX 15 15 GLU B 124 TRP B 134 1 11 HELIX 16 16 ASN B 137 ALA B 146 1 10 HELIX 17 17 PRO B 152 SER B 160 1 9 HELIX 18 18 LYS B 165 ASP B 181 1 17 HELIX 19 19 PRO C 7 LEU C 46 1 40 HELIX 20 20 LYS C 49 ARG C 83 1 35 HELIX 21 21 ARG C 83 ASN C 88 1 6 HELIX 22 22 THR C 92 LYS C 98 1 7 HELIX 23 23 GLY C 104 VAL C 119 1 16 HELIX 24 24 GLU C 124 TRP C 134 1 11 HELIX 25 25 ASN C 137 ALA C 146 1 10 HELIX 26 26 PRO C 152 SER C 160 1 9 HELIX 27 27 LYS C 165 ASP C 181 1 17 HELIX 28 28 PHE D 8 LEU D 46 1 39 HELIX 29 29 LYS D 49 ARG D 83 1 35 HELIX 30 30 ARG D 83 ASN D 88 1 6 HELIX 31 31 THR D 92 LYS D 98 1 7 HELIX 32 32 ILE D 105 VAL D 119 1 15 HELIX 33 33 VAL D 122 GLU D 124 5 3 HELIX 34 34 LEU D 125 TRP D 134 1 10 HELIX 35 35 ASN D 137 ALA D 146 1 10 HELIX 36 36 PRO D 152 SER D 160 1 9 HELIX 37 37 LYS D 165 ASP D 181 1 17 HELIX 38 38 TYR D 184 GLU D 188 5 5 HELIX 39 39 GLU E 190 LEU E 202 1 13 HELIX 40 40 GLU F 192 GLY F 204 1 13 HELIX 41 41 LYS G 194 LEU G 199 1 6 HELIX 42 42 ARG G 200 ARG G 203 5 4 HELIX 43 43 LYS H 191 ARG H 203 1 13 CRYST1 165.916 165.916 121.559 90.00 90.00 90.00 P 42 2 2 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006027 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006027 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008226 0.00000