HEADER HYDROLASE 03-MAR-09 3GHH TITLE STRUCTURAL INSIGHTS INTO THE CATALYTIC MECHANISM OF CD38: EVIDENCE FOR TITLE 2 A CONFORMATIONALLY FLEXIBLE COVALENT ENZYME-SUBSTRATE COMPLEX. COMPND MOL_ID: 1; COMPND 2 MOLECULE: ECTO-NAD+ GLYCOHYDROLASE (CD38 MOLECULE); COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 32-278; COMPND 5 EC: 3.2.2.5; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 3 ORGANISM_COMMON: BOVINE,COW,DOMESTIC CATTLE,DOMESTIC COW; SOURCE 4 ORGANISM_TAXID: 9913; SOURCE 5 GENE: CD38; SOURCE 6 EXPRESSION_SYSTEM: PICHIA PASTORIS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 4922 KEYWDS CD38, CYCLIC ADP RIBOSE, ECTO-ADP-RIBOSYL CYCLASE, 2-GLYCOSIDASE, KEYWDS 2 GLYCOSIDASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR P.F.EGEA,H.MULLER-STEFFNER,R.M.STROUD,N.J.OPPENHEIMER,E.KELLENBERGER, AUTHOR 2 F.SCHUBER REVDAT 9 27-NOV-24 3GHH 1 REMARK REVDAT 8 06-SEP-23 3GHH 1 REMARK REVDAT 7 20-OCT-21 3GHH 1 SEQADV HETSYN REVDAT 6 29-JUL-20 3GHH 1 COMPND REMARK HETNAM LINK REVDAT 6 2 1 SITE ATOM REVDAT 5 24-JUL-19 3GHH 1 REMARK LINK REVDAT 4 01-NOV-17 3GHH 1 REMARK REVDAT 3 23-JAN-13 3GHH 1 JRNL REVDAT 2 02-MAY-12 3GHH 1 VERSN REVDAT 1 16-MAR-10 3GHH 0 JRNL AUTH P.F.EGEA,H.MULLER-STEFFNER,I.KUHN,C.CAKIR-KIEFER, JRNL AUTH 2 N.J.OPPENHEIMER,R.M.STROUD,E.KELLENBERGER,F.SCHUBER JRNL TITL INSIGHTS INTO THE MECHANISM OF BOVINE JRNL TITL 2 CD38/NAD+GLYCOHYDROLASE FROM THE X-RAY STRUCTURES OF ITS JRNL TITL 3 MICHAELIS COMPLEX AND COVALENTLY-TRAPPED INTERMEDIATES. JRNL REF PLOS ONE V. 7 34918 2012 JRNL REFN ESSN 1932-6203 JRNL PMID 22529956 JRNL DOI 10.1371/JOURNAL.PONE.0034918 REMARK 2 REMARK 2 RESOLUTION. 1.94 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.94 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.40 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.1 REMARK 3 NUMBER OF REFLECTIONS : 41859 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.750 REMARK 3 FREE R VALUE TEST SET COUNT : 3242 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.4045 - 5.4964 0.96 1839 170 0.2131 0.2218 REMARK 3 2 5.4964 - 4.3652 0.96 1739 161 0.1725 0.1926 REMARK 3 3 4.3652 - 3.8141 0.94 1684 144 0.1730 0.2025 REMARK 3 4 3.8141 - 3.4657 0.95 1712 146 0.1853 0.2082 REMARK 3 5 3.4657 - 3.2175 0.94 1677 142 0.2031 0.2454 REMARK 3 6 3.2175 - 3.0279 0.95 1676 145 0.2021 0.2139 REMARK 3 7 3.0279 - 2.8763 0.94 1654 133 0.2134 0.2852 REMARK 3 8 2.8763 - 2.7512 0.94 1655 147 0.2269 0.2433 REMARK 3 9 2.7512 - 2.6453 0.95 1705 117 0.2095 0.2641 REMARK 3 10 2.6453 - 2.5541 0.95 1656 139 0.2018 0.2601 REMARK 3 11 2.5541 - 2.4742 0.95 1683 132 0.1980 0.2554 REMARK 3 12 2.4742 - 2.4035 0.96 1679 152 0.1991 0.2539 REMARK 3 13 2.4035 - 2.3402 0.96 1684 142 0.2169 0.2731 REMARK 3 14 2.3402 - 2.2832 0.96 1709 126 0.1984 0.2652 REMARK 3 15 2.2832 - 2.2313 0.96 1665 136 0.2041 0.2326 REMARK 3 16 2.2313 - 2.1838 0.96 1683 134 0.2036 0.2726 REMARK 3 17 2.1838 - 2.1401 0.97 1697 131 0.2057 0.2468 REMARK 3 18 2.1401 - 2.0997 0.97 1693 148 0.2071 0.2762 REMARK 3 19 2.0997 - 2.0622 0.97 1674 143 0.2020 0.2452 REMARK 3 20 2.0622 - 2.0273 0.97 1680 142 0.2119 0.2412 REMARK 3 21 2.0273 - 1.9946 0.96 1653 147 0.2253 0.3057 REMARK 3 22 1.9946 - 1.9639 0.96 1664 140 0.2273 0.2993 REMARK 3 23 1.9639 - 1.9400 0.85 1456 125 0.2333 0.2520 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.37 REMARK 3 B_SOL : 50.73 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.280 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.510 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.89410 REMARK 3 B22 (A**2) : -0.64020 REMARK 3 B33 (A**2) : 4.53430 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 4015 REMARK 3 ANGLE : 1.655 5442 REMARK 3 CHIRALITY : 0.081 581 REMARK 3 PLANARITY : 0.008 695 REMARK 3 DIHEDRAL : 18.632 1529 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3GHH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-MAR-09. REMARK 100 THE DEPOSITION ID IS D_1000051865. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-MAY-07 REMARK 200 TEMPERATURE (KELVIN) : 77 REMARK 200 PH : 6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.11587 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41975 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.940 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07020 REMARK 200 FOR THE DATA SET : 11.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.94 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.01 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.60900 REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRIES 3GC6 AND 1YH3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20-30% PEG 4000, 50-250MM AMMONIUM REMARK 280 SULFATE, 100 MM SODIUM CACODYLATE OR SODIUM ACETATE OR MES AT PH- REMARK 280 6.0-6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K, PH 6 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.19950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 78.14850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.70550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 78.14850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.19950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.70550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4020 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -54.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 TYR A 32 REMARK 465 LYS A 33 REMARK 465 TRP A 34 REMARK 465 HIS A 35 REMARK 465 TYR A 36 REMARK 465 SER A 37 REMARK 465 GLY A 38 REMARK 465 LEU A 39 REMARK 465 SER A 278 REMARK 465 TYR B 32 REMARK 465 LYS B 33 REMARK 465 TRP B 34 REMARK 465 HIS B 35 REMARK 465 TYR B 36 REMARK 465 SER B 37 REMARK 465 GLY B 38 REMARK 465 GLN B 276 REMARK 465 ARG B 277 REMARK 465 SER B 278 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 41 CG CD NE CZ NH1 NH2 REMARK 470 SER A 70 OG REMARK 470 ARG A 71 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 123 CG CD OE1 OE2 REMARK 470 ARG B 132 CG CD NE CZ NH1 NH2 REMARK 470 SER B 158 OG REMARK 470 ASP B 159 CG OD1 OD2 REMARK 470 GLU B 227 CG CD OE1 OE2 REMARK 470 LYS B 238 CG CD CE NZ REMARK 470 SER B 247 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS A 96 O HOH A 410 1.81 REMARK 500 CG2 THR B 236 CB SER B 270 1.95 REMARK 500 N GLY B 44 O HOH B 380 2.06 REMARK 500 NE2 GLN A 52 O HOH A 411 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CE3 TRP B 163 NH2 ARG B 173 4545 1.18 REMARK 500 CZ3 TRP B 163 NH2 ARG B 173 4545 1.54 REMARK 500 CD2 TRP B 163 NH2 ARG B 173 4545 1.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 239 C - N - CD ANGL. DEV. = -18.2 DEGREES REMARK 500 PRO B 240 C - N - CD ANGL. DEV. = -19.0 DEGREES REMARK 500 GLN B 273 CB - CA - C ANGL. DEV. = 13.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 70 -126.90 146.18 REMARK 500 ALA A 106 74.10 -165.04 REMARK 500 ASN A 194 -134.67 61.05 REMARK 500 ALA B 106 73.98 -156.84 REMARK 500 THR B 121 28.58 -141.91 REMARK 500 ASP B 171 -70.53 -110.93 REMARK 500 ASN B 194 -136.94 53.60 REMARK 500 SER B 203 -36.20 64.14 REMARK 500 GLN B 225 -11.94 78.28 REMARK 500 PRO B 239 -173.50 -42.79 REMARK 500 PRO B 240 -94.70 -78.40 REMARK 500 SER B 241 -35.41 129.25 REMARK 500 ASN B 260 30.86 84.87 REMARK 500 ASP B 267 -153.13 -111.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3GH3 RELATED DB: PDB REMARK 900 BOVINE CD38 WILT TYPE (APO) REMARK 900 RELATED ID: 3GC6 RELATED DB: PDB REMARK 900 BOVINE CD38 MUTANT E218Q (APO) REMARK 900 RELATED ID: 1YH3 RELATED DB: PDB REMARK 900 HUMAN CD38 DBREF 3GHH A 32 278 UNP Q9TTF5 Q9TTF5_BOVIN 32 278 DBREF 3GHH B 32 278 UNP Q9TTF5 Q9TTF5_BOVIN 32 278 SEQADV 3GHH GLN A 218 UNP Q9TTF5 GLU 218 ENGINEERED MUTATION SEQADV 3GHH GLN B 218 UNP Q9TTF5 GLU 218 ENGINEERED MUTATION SEQRES 1 A 247 TYR LYS TRP HIS TYR SER GLY LEU ASN ARG TRP HIS GLY SEQRES 2 A 247 ALA GLY SER THR ALA ASP PHE GLN LYS ILE ILE GLN GLU SEQRES 3 A 247 ARG CYS ASP THR TYR THR GLN THR ILE ARG PRO GLY SER SEQRES 4 A 247 ARG SER ARG ASN CYS GLN ALA ILE ARG GLN ALA PHE MET SEQRES 5 A 247 SER ALA PHE ILE SER LYS ASP PRO CYS LYS ALA THR LYS SEQRES 6 A 247 GLU ASP TYR ASN SER LEU ILE ASN LEU ALA PRO PRO THR SEQRES 7 A 247 VAL PRO CYS GLY GLN GLN VAL PHE TRP SER LYS THR LYS SEQRES 8 A 247 GLU LEU ALA HIS GLU TYR ALA LYS ARG ARG ARG LEU MET SEQRES 9 A 247 THR LEU GLU ASP THR LEU LEU GLY TYR LEU ALA ASP GLY SEQRES 10 A 247 LEU ARG TRP CYS GLY GLU PRO GLY SER SER ASP LEU ASN SEQRES 11 A 247 ILE TRP SER CYS PRO ASP TRP ARG LYS ASP CYS ARG THR SEQRES 12 A 247 ASN TYR LEU SER VAL PHE TRP GLU VAL LEU SER GLU ARG SEQRES 13 A 247 PHE ALA GLU SER ALA CYS ASN THR VAL ARG VAL VAL LEU SEQRES 14 A 247 ASN GLY SER LEU GLU ASN ALA PHE ASP SER MET SER ILE SEQRES 15 A 247 PHE GLY ARG VAL GLN ALA PRO ASN LEU ARG PRO GLN VAL SEQRES 16 A 247 GLU LEU GLU ALA TRP LEU VAL HIS ASP THR GLY LYS PRO SEQRES 17 A 247 PRO SER ASP SER CYS SER GLY SER SER ILE ARG LYS LEU SEQRES 18 A 247 LYS SER ILE LEU ASP GLY ARG ASN VAL LYS PHE ARG CYS SEQRES 19 A 247 MET ASP ASN LEU SER ARG ASP GLN PHE LEU GLN ARG SER SEQRES 1 B 247 TYR LYS TRP HIS TYR SER GLY LEU ASN ARG TRP HIS GLY SEQRES 2 B 247 ALA GLY SER THR ALA ASP PHE GLN LYS ILE ILE GLN GLU SEQRES 3 B 247 ARG CYS ASP THR TYR THR GLN THR ILE ARG PRO GLY SER SEQRES 4 B 247 ARG SER ARG ASN CYS GLN ALA ILE ARG GLN ALA PHE MET SEQRES 5 B 247 SER ALA PHE ILE SER LYS ASP PRO CYS LYS ALA THR LYS SEQRES 6 B 247 GLU ASP TYR ASN SER LEU ILE ASN LEU ALA PRO PRO THR SEQRES 7 B 247 VAL PRO CYS GLY GLN GLN VAL PHE TRP SER LYS THR LYS SEQRES 8 B 247 GLU LEU ALA HIS GLU TYR ALA LYS ARG ARG ARG LEU MET SEQRES 9 B 247 THR LEU GLU ASP THR LEU LEU GLY TYR LEU ALA ASP GLY SEQRES 10 B 247 LEU ARG TRP CYS GLY GLU PRO GLY SER SER ASP LEU ASN SEQRES 11 B 247 ILE TRP SER CYS PRO ASP TRP ARG LYS ASP CYS ARG THR SEQRES 12 B 247 ASN TYR LEU SER VAL PHE TRP GLU VAL LEU SER GLU ARG SEQRES 13 B 247 PHE ALA GLU SER ALA CYS ASN THR VAL ARG VAL VAL LEU SEQRES 14 B 247 ASN GLY SER LEU GLU ASN ALA PHE ASP SER MET SER ILE SEQRES 15 B 247 PHE GLY ARG VAL GLN ALA PRO ASN LEU ARG PRO GLN VAL SEQRES 16 B 247 GLU LEU GLU ALA TRP LEU VAL HIS ASP THR GLY LYS PRO SEQRES 17 B 247 PRO SER ASP SER CYS SER GLY SER SER ILE ARG LYS LEU SEQRES 18 B 247 LYS SER ILE LEU ASP GLY ARG ASN VAL LYS PHE ARG CYS SEQRES 19 B 247 MET ASP ASN LEU SER ARG ASP GLN PHE LEU GLN ARG SER MODRES 3GHH ASN A 201 ASN GLYCOSYLATION SITE MODRES 3GHH ASN B 201 ASN GLYCOSYLATION SITE HET NAG C 1 14 HET NAG C 2 14 HET NAG D 1 14 HET NAG D 2 14 HET SO4 A 2 5 HET SO4 A 3 5 HET SO4 A 5 5 HET SO4 B 1 5 HET SO4 B 4 5 HET 2NF B 301 44 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM SO4 SULFATE ION HETNAM 2NF [[(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4- HETNAM 2 2NF DIHYDROXYOXOLAN-2-YL]METHOXY-HYDROXYPHOSPHORYL] [(2R, HETNAM 3 2NF 3S,4R,5R)-5-(3-CARBAMOYLPYRIDIN-1-IUM-1YL)- 3-FLUORO-, HETNAM 4 2NF 4- HYDROXYOXOLAN-2-YL]METHYL PHOSPHATE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN 2NF NICOTINAMIDE 2'-DEOXY-2'-FLUORORIBOFURANOSYL ADENINE HETSYN 2 2NF DINUCLEOTIDE FORMUL 3 NAG 4(C8 H15 N O6) FORMUL 5 SO4 5(O4 S 2-) FORMUL 10 2NF C21 H26 F N7 O13 P2 FORMUL 11 HOH *264(H2 O) HELIX 1 1 ASP A 50 ILE A 66 1 17 HELIX 2 2 ASN A 74 ILE A 87 1 14 HELIX 3 3 THR A 95 ASP A 98 5 4 HELIX 4 4 TYR A 99 ALA A 106 1 8 HELIX 5 5 THR A 121 ARG A 133 1 13 HELIX 6 6 THR A 140 ASP A 147 1 8 HELIX 7 7 ASN A 175 ALA A 192 1 18 HELIX 8 8 SER A 212 VAL A 217 1 6 HELIX 9 9 GLN A 218 LEU A 222 5 5 HELIX 10 10 GLY A 246 ARG A 259 1 14 HELIX 11 11 ARG A 271 ARG A 277 1 7 HELIX 12 12 ASP B 50 ILE B 66 1 17 HELIX 13 13 ASN B 74 ILE B 87 1 14 HELIX 14 14 THR B 95 ASP B 98 5 4 HELIX 15 15 TYR B 99 ALA B 106 1 8 HELIX 16 16 THR B 121 ARG B 133 1 13 HELIX 17 17 THR B 136 ASP B 139 5 4 HELIX 18 18 THR B 140 ASP B 147 1 8 HELIX 19 19 ASN B 175 SER B 191 1 17 HELIX 20 20 SER B 212 VAL B 217 1 6 HELIX 21 21 GLN B 218 LEU B 222 5 5 HELIX 22 22 GLY B 246 ASP B 257 1 12 HELIX 23 23 SER B 270 LEU B 275 1 6 SHEET 1 A 2 GLY A 44 ALA A 45 0 SHEET 2 A 2 SER A 164 CYS A 165 -1 O CYS A 165 N GLY A 44 SHEET 1 B 5 MET A 135 THR A 136 0 SHEET 2 B 5 GLN A 115 SER A 119 1 N VAL A 116 O MET A 135 SHEET 3 B 5 THR A 195 ASN A 201 1 O ARG A 197 N PHE A 117 SHEET 4 B 5 GLU A 227 HIS A 234 1 O GLU A 227 N VAL A 196 SHEET 5 B 5 LYS A 262 SER A 270 1 O LYS A 262 N LEU A 228 SHEET 1 C 2 GLY B 44 ALA B 45 0 SHEET 2 C 2 SER B 164 CYS B 165 -1 O CYS B 165 N GLY B 44 SHEET 1 D 4 VAL B 116 TRP B 118 0 SHEET 2 D 4 THR B 195 ASN B 201 1 O ARG B 197 N PHE B 117 SHEET 3 D 4 GLU B 227 VAL B 233 1 O GLU B 229 N VAL B 196 SHEET 4 D 4 LYS B 262 LEU B 269 1 O MET B 266 N ALA B 230 SSBOND 1 CYS A 59 CYS A 75 1555 1555 2.07 SSBOND 2 CYS A 92 CYS A 172 1555 1555 1.94 SSBOND 3 CYS A 112 CYS A 193 1555 1555 2.04 SSBOND 4 CYS A 152 CYS A 165 1555 1555 2.05 SSBOND 5 CYS A 244 CYS A 265 1555 1555 2.04 SSBOND 6 CYS B 59 CYS B 75 1555 1555 2.06 SSBOND 7 CYS B 92 CYS B 172 1555 1555 2.03 SSBOND 8 CYS B 112 CYS B 193 1555 1555 2.04 SSBOND 9 CYS B 152 CYS B 165 1555 1555 2.03 SSBOND 10 CYS B 244 CYS B 265 1555 1555 2.03 LINK ND2 ASN A 201 C1 NAG C 1 1555 1555 1.45 LINK ND2 ASN B 201 C1 NAG D 1 1555 1555 1.45 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.45 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.45 CISPEP 1 GLY A 69 SER A 70 0 6.51 CISPEP 2 THR A 236 GLY A 237 0 12.11 CISPEP 3 GLY B 202 SER B 203 0 -6.71 CISPEP 4 THR B 236 GLY B 237 0 1.47 CRYST1 46.399 79.411 156.297 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021552 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012593 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006398 0.00000