data_3GI7 # _entry.id 3GI7 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3GI7 pdb_00003gi7 10.2210/pdb3gi7/pdb RCSB RCSB051891 ? ? WWPDB D_1000051891 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id 365921 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 3GI7 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2009-03-05 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title ;Crystal structure of secreted protein of unknown function (DUF1311) (NP_742474.1) from Pseudomonas putida KT2440 at 1.85 A resolution ; _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.entry_id 3GI7 _cell.length_a 100.027 _cell.length_b 100.027 _cell.length_c 58.343 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3GI7 _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Secreted protein of unknown function DUF1311' 13800.419 2 ? ? 'UNP residues 23-143' ? 2 non-polymer syn 'UNKNOWN LIGAND' ? 2 ? ? ? ? 3 non-polymer syn 'SULFATE ION' 96.063 5 ? ? ? ? 4 water nat water 18.015 174 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GADEEESTPCDNVETDQQTFACAAFNKQVAERELQSAYDELIER(MSE)RDQFGDEAGL(MSE)SRIEAAEKVWSQLRDA DCKVETHAEQPGSNAYQIAWNSCIAQRSDERAEYLRSLGSQNSDEPAPED ; _entity_poly.pdbx_seq_one_letter_code_can ;GADEEESTPCDNVETDQQTFACAAFNKQVAERELQSAYDELIERMRDQFGDEAGLMSRIEAAEKVWSQLRDADCKVETHA EQPGSNAYQIAWNSCIAQRSDERAEYLRSLGSQNSDEPAPED ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier 365921 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 ALA n 1 3 ASP n 1 4 GLU n 1 5 GLU n 1 6 GLU n 1 7 SER n 1 8 THR n 1 9 PRO n 1 10 CYS n 1 11 ASP n 1 12 ASN n 1 13 VAL n 1 14 GLU n 1 15 THR n 1 16 ASP n 1 17 GLN n 1 18 GLN n 1 19 THR n 1 20 PHE n 1 21 ALA n 1 22 CYS n 1 23 ALA n 1 24 ALA n 1 25 PHE n 1 26 ASN n 1 27 LYS n 1 28 GLN n 1 29 VAL n 1 30 ALA n 1 31 GLU n 1 32 ARG n 1 33 GLU n 1 34 LEU n 1 35 GLN n 1 36 SER n 1 37 ALA n 1 38 TYR n 1 39 ASP n 1 40 GLU n 1 41 LEU n 1 42 ILE n 1 43 GLU n 1 44 ARG n 1 45 MSE n 1 46 ARG n 1 47 ASP n 1 48 GLN n 1 49 PHE n 1 50 GLY n 1 51 ASP n 1 52 GLU n 1 53 ALA n 1 54 GLY n 1 55 LEU n 1 56 MSE n 1 57 SER n 1 58 ARG n 1 59 ILE n 1 60 GLU n 1 61 ALA n 1 62 ALA n 1 63 GLU n 1 64 LYS n 1 65 VAL n 1 66 TRP n 1 67 SER n 1 68 GLN n 1 69 LEU n 1 70 ARG n 1 71 ASP n 1 72 ALA n 1 73 ASP n 1 74 CYS n 1 75 LYS n 1 76 VAL n 1 77 GLU n 1 78 THR n 1 79 HIS n 1 80 ALA n 1 81 GLU n 1 82 GLN n 1 83 PRO n 1 84 GLY n 1 85 SER n 1 86 ASN n 1 87 ALA n 1 88 TYR n 1 89 GLN n 1 90 ILE n 1 91 ALA n 1 92 TRP n 1 93 ASN n 1 94 SER n 1 95 CYS n 1 96 ILE n 1 97 ALA n 1 98 GLN n 1 99 ARG n 1 100 SER n 1 101 ASP n 1 102 GLU n 1 103 ARG n 1 104 ALA n 1 105 GLU n 1 106 TYR n 1 107 LEU n 1 108 ARG n 1 109 SER n 1 110 LEU n 1 111 GLY n 1 112 SER n 1 113 GLN n 1 114 ASN n 1 115 SER n 1 116 ASP n 1 117 GLU n 1 118 PRO n 1 119 ALA n 1 120 PRO n 1 121 GLU n 1 122 ASP n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'NP_742474.1, PP0307, PP_0307' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain KT2440 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Pseudomonas putida' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 160488 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain HK100 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name SpeedETS _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q88R27_PSEPK _struct_ref.pdbx_db_accession Q88R27 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;ADEEESTPCDNVETDQQTFACAAFNKQVAERELQSAYDELIERMRDQFGDEAGLMSRIEAAEKVWSQLRDADCKVETHAE QPGSNAYQIAWNSCIAQRSDERAEYLRSLGSQNSDEPAPED ; _struct_ref.pdbx_align_begin 23 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3GI7 A 2 ? 122 ? Q88R27 23 ? 143 ? 23 143 2 1 3GI7 B 2 ? 122 ? Q88R27 23 ? 143 ? 23 143 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3GI7 GLY A 1 ? UNP Q88R27 ? ? 'expression tag' 22 1 2 3GI7 GLY B 1 ? UNP Q88R27 ? ? 'expression tag' 22 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 UNL non-polymer . 'UNKNOWN LIGAND' ? ? ? VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 3GI7 # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.64 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 53.47 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 5.67 _exptl_crystal_grow.temp 293 _exptl_crystal_grow.pdbx_details ;NANODROP, 2.10M Ammonium sulfate, 0.250M Potassium sodium tartrate, 0.1M Sodium citrate - citric acid pH 5.67, VAPOR DIFFUSION, SITTING DROP, temperature 293K ; _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 325 mm CCD' _diffrn_detector.details 'Flat collimating mirror, toroid focusing mirror' _diffrn_detector.pdbx_collection_date 2009-01-19 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Double crystal' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.91162 1.0 2 0.97964 1.0 3 0.97949 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline BL9-2 _diffrn_source.type 'SSRL BEAMLINE BL9-2' _diffrn_source.pdbx_wavelength_list '0.91162, 0.97964, 0.97949' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.entry_id 3GI7 _reflns.d_resolution_high 1.85 _reflns.d_resolution_low 29.173 _reflns.number_obs 25875 _reflns.pdbx_Rmerge_I_obs 0.065 _reflns.pdbx_Rsym_value 0.065 _reflns.pdbx_redundancy 7.200 _reflns.percent_possible_obs 100.000 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all ? _reflns.B_iso_Wilson_estimate 31.628 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_netI_over_av_sigmaI 7.149 _reflns.pdbx_netI_over_sigmaI 18.500 _reflns.pdbx_Rrim_I_all 0.070 _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.85 1.90 ? 13774 ? 0.692 2.700 0.692 ? 7.30 ? 1880 100.00 1 1 1.90 1.95 ? 13349 ? 0.573 1.4 0.573 ? 7.30 ? 1818 100.00 2 1 1.95 2.01 ? 13157 ? 0.371 2.1 0.371 ? 7.40 ? 1788 100.00 3 1 2.01 2.07 ? 12704 ? 0.283 2.7 0.283 ? 7.30 ? 1739 100.00 4 1 2.07 2.14 ? 12299 ? 0.227 3.4 0.227 ? 7.30 ? 1674 100.00 5 1 2.14 2.21 ? 11818 ? 0.176 4.3 0.176 ? 7.30 ? 1615 100.00 6 1 2.21 2.29 ? 11622 ? 0.134 5.6 0.134 ? 7.30 ? 1588 100.00 7 1 2.29 2.39 ? 11085 ? 0.107 6.8 0.107 ? 7.30 ? 1513 100.00 8 1 2.39 2.49 ? 10597 ? 0.099 7.2 0.099 ? 7.30 ? 1453 100.00 9 1 2.49 2.62 ? 10241 ? 0.088 7.3 0.088 ? 7.30 ? 1404 100.00 10 1 2.62 2.76 ? 9751 ? 0.084 7.7 0.084 ? 7.30 ? 1336 100.00 11 1 2.76 2.93 ? 9217 ? 0.079 7.7 0.079 ? 7.30 ? 1269 100.00 12 1 2.93 3.13 ? 8650 ? 0.067 8.6 0.067 ? 7.20 ? 1200 100.00 13 1 3.13 3.38 ? 8028 ? 0.056 10.5 0.056 ? 7.30 ? 1107 100.00 14 1 3.38 3.70 ? 7453 ? 0.046 12.6 0.046 ? 7.20 ? 1039 100.00 15 1 3.70 4.14 ? 6844 ? 0.041 14.2 0.041 ? 7.20 ? 957 100.00 16 1 4.14 4.78 ? 5889 ? 0.048 12.5 0.048 ? 7.00 ? 837 100.00 17 1 4.78 5.85 ? 4988 ? 0.048 12.1 0.048 ? 6.90 ? 727 100.00 18 1 5.85 8.27 ? 3879 ? 0.037 16.0 0.037 ? 6.60 ? 587 100.00 19 1 8.27 29.173 ? 1960 ? 0.034 17.6 0.034 ? 5.70 ? 344 97.20 20 1 # _refine.entry_id 3GI7 _refine.ls_d_res_high 1.850 _refine.ls_d_res_low 29.173 _refine.pdbx_ls_sigma_F 0.00 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.960 _refine.ls_number_reflns_obs 25827 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 3. ATOM RECORDS CONTAIN RESIDUAL B FACTORS ONLY. 4. SULFATE (SO4) MODELED IS PRESENT IN CRYSTALLIZATION CONDITIONS. 5. AN UNKNOWN LIGAND (UNL) WAS MODELED NEAR THE CONSERVED RESIDUE ARG 120. THE DENSITY IS DISORDERED IN THIS REGION. ; _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.179 _refine.ls_R_factor_R_work 0.178 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.199 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.100 _refine.ls_number_reflns_R_free 1314 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 25.285 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.ls_number_reflns_R_work 24513 _refine.aniso_B[1][1] 0.170 _refine.aniso_B[2][2] 0.170 _refine.aniso_B[3][3] -0.330 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.960 _refine.correlation_coeff_Fo_to_Fc_free 0.953 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R 0.114 _refine.pdbx_overall_ESU_R_Free 0.105 _refine.overall_SU_ML 0.066 _refine.overall_SU_B 4.871 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 88.78 _refine.B_iso_min 5.24 _refine.occupancy_max 1.00 _refine.occupancy_min 0.25 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1561 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 33 _refine_hist.number_atoms_solvent 174 _refine_hist.number_atoms_total 1768 _refine_hist.d_res_high 1.850 _refine_hist.d_res_low 29.173 # loop_ _refine_ls_restr.type _refine_ls_restr.pdbx_refine_id _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 'X-RAY DIFFRACTION' 1791 0.018 0.021 ? ? r_bond_other_d 'X-RAY DIFFRACTION' 1240 0.007 0.020 ? ? r_angle_refined_deg 'X-RAY DIFFRACTION' 2454 1.486 1.944 ? ? r_angle_other_deg 'X-RAY DIFFRACTION' 3007 1.178 3.003 ? ? r_dihedral_angle_1_deg 'X-RAY DIFFRACTION' 244 4.235 5.000 ? ? r_dihedral_angle_2_deg 'X-RAY DIFFRACTION' 110 33.536 24.364 ? ? r_dihedral_angle_3_deg 'X-RAY DIFFRACTION' 320 12.441 15.000 ? ? r_dihedral_angle_4_deg 'X-RAY DIFFRACTION' 22 19.668 15.000 ? ? r_chiral_restr 'X-RAY DIFFRACTION' 252 0.151 0.200 ? ? r_gen_planes_refined 'X-RAY DIFFRACTION' 2113 0.006 0.020 ? ? r_gen_planes_other 'X-RAY DIFFRACTION' 389 0.001 0.020 ? ? r_mcbond_it 'X-RAY DIFFRACTION' 1078 1.798 3.000 ? ? r_mcbond_other 'X-RAY DIFFRACTION' 433 0.717 3.000 ? ? r_mcangle_it 'X-RAY DIFFRACTION' 1730 2.862 5.000 ? ? r_scbond_it 'X-RAY DIFFRACTION' 713 5.423 8.000 ? ? r_scangle_it 'X-RAY DIFFRACTION' 699 7.981 11.000 ? ? # loop_ _refine_ls_restr_ncs.pdbx_refine_id _refine_ls_restr_ncs.pdbx_ens_id _refine_ls_restr_ncs.dom_id _refine_ls_restr_ncs.pdbx_type _refine_ls_restr_ncs.pdbx_auth_asym_id _refine_ls_restr_ncs.pdbx_number _refine_ls_restr_ncs.rms_dev_position _refine_ls_restr_ncs.weight_position _refine_ls_restr_ncs.pdbx_ordinal _refine_ls_restr_ncs.ncs_model_details _refine_ls_restr_ncs.rms_dev_B_iso _refine_ls_restr_ncs.weight_B_iso 'X-RAY DIFFRACTION' 1 1 'MEDIUM POSITIONAL' A 580 0.350 0.500 1 ? ? ? 'X-RAY DIFFRACTION' 1 1 'LOOSE POSITIONAL' A 755 0.620 5.000 2 ? ? ? 'X-RAY DIFFRACTION' 1 1 'MEDIUM THERMAL' A 580 1.210 2.000 3 ? ? ? 'X-RAY DIFFRACTION' 1 1 'LOOSE THERMAL' A 755 1.320 10.000 4 ? ? ? # _refine_ls_shell.d_res_high 1.850 _refine_ls_shell.d_res_low 1.898 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 100.000 _refine_ls_shell.number_reflns_R_work 1771 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.279 _refine_ls_shell.R_factor_R_free 0.338 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 106 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 1877 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _struct_ncs_dom.pdbx_ens_id _struct_ncs_dom.id _struct_ncs_dom.details 1 1 A 1 2 B # loop_ _struct_ncs_dom_lim.pdbx_ens_id _struct_ncs_dom_lim.dom_id _struct_ncs_dom_lim.pdbx_component_id _struct_ncs_dom_lim.pdbx_refine_code _struct_ncs_dom_lim.beg_auth_asym_id _struct_ncs_dom_lim.beg_auth_seq_id _struct_ncs_dom_lim.end_auth_asym_id _struct_ncs_dom_lim.end_auth_seq_id _struct_ncs_dom_lim.selection_details _struct_ncs_dom_lim.beg_label_asym_id _struct_ncs_dom_lim.beg_label_comp_id _struct_ncs_dom_lim.beg_label_seq_id _struct_ncs_dom_lim.beg_label_alt_id _struct_ncs_dom_lim.end_label_asym_id _struct_ncs_dom_lim.end_label_comp_id _struct_ncs_dom_lim.end_label_seq_id _struct_ncs_dom_lim.end_label_alt_id 1 1 1 5 A 1 A 143 ? . . . . . . . . 1 2 1 5 B 1 B 143 ? . . . . . . . . # _struct_ncs_ens.id 1 _struct_ncs_ens.details ? # _struct.entry_id 3GI7 _struct.title 'Crystal structure of a duf1311 family protein (pp0307) from pseudomonas putida kt2440 at 1.85 A resolution' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text ;Secreted protein, structural genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-2, unknown function ; _struct_keywords.pdbx_keywords 'UNKNOWN FUNCTION' _struct_keywords.entry_id 3GI7 # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 3 ? F N N 2 ? G N N 3 ? H N N 3 ? I N N 3 ? J N N 4 ? K N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 16 ? GLY A 50 ? ASP A 37 GLY A 71 1 ? 35 HELX_P HELX_P2 2 GLY A 54 ? THR A 78 ? GLY A 75 THR A 99 1 ? 25 HELX_P HELX_P3 3 SER A 85 ? SER A 112 ? SER A 106 SER A 133 1 ? 28 HELX_P HELX_P4 4 ASP B 16 ? GLY B 50 ? ASP B 37 GLY B 71 1 ? 35 HELX_P HELX_P5 5 GLY B 54 ? THR B 78 ? GLY B 75 THR B 99 1 ? 25 HELX_P HELX_P6 6 SER B 100 ? LEU B 110 ? SER B 121 LEU B 131 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 22 SG ? ? ? 1_555 A CYS 22 SG ? ? A CYS 43 A CYS 43 7_555 ? ? ? ? ? ? ? 2.222 ? ? disulf2 disulf ? ? A CYS 74 SG ? ? ? 1_555 A CYS 95 SG ? ? A CYS 95 A CYS 116 1_555 ? ? ? ? ? ? ? 2.083 ? ? disulf3 disulf ? ? B CYS 22 SG ? ? ? 1_555 B CYS 22 SG ? ? B CYS 43 B CYS 43 7_555 ? ? ? ? ? ? ? 2.271 ? ? disulf4 disulf ? ? B CYS 74 SG ? ? ? 1_555 B CYS 95 SG ? ? B CYS 95 B CYS 116 1_555 ? ? ? ? ? ? ? 2.104 ? ? covale1 covale both ? A ARG 44 C ? ? ? 1_555 A MSE 45 N ? ? A ARG 65 A MSE 66 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale2 covale both ? A MSE 45 C ? ? ? 1_555 A ARG 46 N ? ? A MSE 66 A ARG 67 1_555 ? ? ? ? ? ? ? 1.313 ? ? covale3 covale both ? A LEU 55 C ? ? ? 1_555 A MSE 56 N ? ? A LEU 76 A MSE 77 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale4 covale both ? A MSE 56 C ? ? ? 1_555 A SER 57 N ? ? A MSE 77 A SER 78 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale5 covale both ? B ARG 44 C ? ? ? 1_555 B MSE 45 N ? ? B ARG 65 B MSE 66 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale6 covale both ? B MSE 45 C ? ? ? 1_555 B ARG 46 N ? ? B MSE 66 B ARG 67 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale7 covale both ? B LEU 55 C ? ? ? 1_555 B MSE 56 N ? ? B LEU 76 B MSE 77 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale8 covale both ? B MSE 56 C ? ? ? 1_555 B SER 57 N ? ? B MSE 77 B SER 78 1_555 ? ? ? ? ? ? ? 1.323 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A UNL 201 ? 6 'BINDING SITE FOR RESIDUE UNL A 201' AC2 Software A SO4 202 ? 3 'BINDING SITE FOR RESIDUE SO4 A 202' AC3 Software A SO4 203 ? 3 'BINDING SITE FOR RESIDUE SO4 A 203' AC4 Software B UNL 201 ? 8 'BINDING SITE FOR RESIDUE UNL B 201' AC5 Software B SO4 202 ? 5 'BINDING SITE FOR RESIDUE SO4 B 202' AC6 Software B SO4 203 ? 2 'BINDING SITE FOR RESIDUE SO4 B 203' AC7 Software B SO4 204 ? 3 'BINDING SITE FOR RESIDUE SO4 B 204' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 ARG A 99 ? ARG A 120 . ? 1_555 ? 2 AC1 6 GLU A 102 ? GLU A 123 . ? 1_555 ? 3 AC1 6 GLU B 102 ? GLU B 123 . ? 1_555 ? 4 AC1 6 ARG B 103 ? ARG B 124 . ? 1_555 ? 5 AC1 6 TYR B 106 ? TYR B 127 . ? 1_555 ? 6 AC1 6 HOH K . ? HOH B 257 . ? 1_555 ? 7 AC2 3 ARG A 58 ? ARG A 79 . ? 1_555 ? 8 AC2 3 HOH J . ? HOH A 236 . ? 1_555 ? 9 AC2 3 LYS B 75 ? LYS B 96 . ? 1_555 ? 10 AC3 3 SER A 67 ? SER A 88 . ? 1_555 ? 11 AC3 3 ARG A 70 ? ARG A 91 . ? 1_555 ? 12 AC3 3 HOH J . ? HOH A 222 . ? 1_555 ? 13 AC4 8 GLU A 102 ? GLU A 123 . ? 1_555 ? 14 AC4 8 ARG A 103 ? ARG A 124 . ? 1_555 ? 15 AC4 8 TYR A 106 ? TYR A 127 . ? 1_555 ? 16 AC4 8 HOH J . ? HOH A 225 . ? 1_555 ? 17 AC4 8 HOH J . ? HOH A 270 . ? 1_555 ? 18 AC4 8 ARG B 99 ? ARG B 120 . ? 1_555 ? 19 AC4 8 GLU B 102 ? GLU B 123 . ? 1_555 ? 20 AC4 8 GLU B 105 ? GLU B 126 . ? 7_555 ? 21 AC5 5 GLY B 54 ? GLY B 75 . ? 1_555 ? 22 AC5 5 LEU B 55 ? LEU B 76 . ? 1_555 ? 23 AC5 5 MSE B 56 ? MSE B 77 . ? 1_555 ? 24 AC5 5 SER B 57 ? SER B 78 . ? 1_555 ? 25 AC5 5 HOH K . ? HOH B 233 . ? 1_555 ? 26 AC6 2 LYS A 75 ? LYS A 96 . ? 1_555 ? 27 AC6 2 ARG B 58 ? ARG B 79 . ? 1_555 ? 28 AC7 3 GLN A 82 ? GLN A 103 . ? 3_545 ? 29 AC7 3 ARG B 70 ? ARG B 91 . ? 1_555 ? 30 AC7 3 HOH K . ? HOH B 270 . ? 1_555 ? # _atom_sites.entry_id 3GI7 _atom_sites.fract_transf_matrix[1][1] 0.009997 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009997 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.017140 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 22 ? ? ? A . n A 1 2 ALA 2 23 ? ? ? A . n A 1 3 ASP 3 24 ? ? ? A . n A 1 4 GLU 4 25 ? ? ? A . n A 1 5 GLU 5 26 ? ? ? A . n A 1 6 GLU 6 27 ? ? ? A . n A 1 7 SER 7 28 ? ? ? A . n A 1 8 THR 8 29 ? ? ? A . n A 1 9 PRO 9 30 ? ? ? A . n A 1 10 CYS 10 31 ? ? ? A . n A 1 11 ASP 11 32 ? ? ? A . n A 1 12 ASN 12 33 33 ASN ASN A . n A 1 13 VAL 13 34 34 VAL VAL A . n A 1 14 GLU 14 35 35 GLU GLU A . n A 1 15 THR 15 36 36 THR THR A . n A 1 16 ASP 16 37 37 ASP ASP A . n A 1 17 GLN 17 38 38 GLN GLN A . n A 1 18 GLN 18 39 39 GLN GLN A . n A 1 19 THR 19 40 40 THR THR A . n A 1 20 PHE 20 41 41 PHE PHE A . n A 1 21 ALA 21 42 42 ALA ALA A . n A 1 22 CYS 22 43 43 CYS CYS A . n A 1 23 ALA 23 44 44 ALA ALA A . n A 1 24 ALA 24 45 45 ALA ALA A . n A 1 25 PHE 25 46 46 PHE PHE A . n A 1 26 ASN 26 47 47 ASN ASN A . n A 1 27 LYS 27 48 48 LYS LYS A . n A 1 28 GLN 28 49 49 GLN GLN A . n A 1 29 VAL 29 50 50 VAL VAL A . n A 1 30 ALA 30 51 51 ALA ALA A . n A 1 31 GLU 31 52 52 GLU GLU A . n A 1 32 ARG 32 53 53 ARG ARG A . n A 1 33 GLU 33 54 54 GLU GLU A . n A 1 34 LEU 34 55 55 LEU LEU A . n A 1 35 GLN 35 56 56 GLN GLN A . n A 1 36 SER 36 57 57 SER SER A . n A 1 37 ALA 37 58 58 ALA ALA A . n A 1 38 TYR 38 59 59 TYR TYR A . n A 1 39 ASP 39 60 60 ASP ASP A . n A 1 40 GLU 40 61 61 GLU GLU A . n A 1 41 LEU 41 62 62 LEU LEU A . n A 1 42 ILE 42 63 63 ILE ILE A . n A 1 43 GLU 43 64 64 GLU GLU A . n A 1 44 ARG 44 65 65 ARG ARG A . n A 1 45 MSE 45 66 66 MSE MSE A . n A 1 46 ARG 46 67 67 ARG ARG A . n A 1 47 ASP 47 68 68 ASP ASP A . n A 1 48 GLN 48 69 69 GLN GLN A . n A 1 49 PHE 49 70 70 PHE PHE A . n A 1 50 GLY 50 71 71 GLY GLY A . n A 1 51 ASP 51 72 72 ASP ASP A . n A 1 52 GLU 52 73 73 GLU GLU A . n A 1 53 ALA 53 74 74 ALA ALA A . n A 1 54 GLY 54 75 75 GLY GLY A . n A 1 55 LEU 55 76 76 LEU LEU A . n A 1 56 MSE 56 77 77 MSE MSE A . n A 1 57 SER 57 78 78 SER SER A . n A 1 58 ARG 58 79 79 ARG ARG A . n A 1 59 ILE 59 80 80 ILE ILE A . n A 1 60 GLU 60 81 81 GLU GLU A . n A 1 61 ALA 61 82 82 ALA ALA A . n A 1 62 ALA 62 83 83 ALA ALA A . n A 1 63 GLU 63 84 84 GLU GLU A . n A 1 64 LYS 64 85 85 LYS LYS A . n A 1 65 VAL 65 86 86 VAL VAL A . n A 1 66 TRP 66 87 87 TRP TRP A . n A 1 67 SER 67 88 88 SER SER A . n A 1 68 GLN 68 89 89 GLN GLN A . n A 1 69 LEU 69 90 90 LEU LEU A . n A 1 70 ARG 70 91 91 ARG ARG A . n A 1 71 ASP 71 92 92 ASP ASP A . n A 1 72 ALA 72 93 93 ALA ALA A . n A 1 73 ASP 73 94 94 ASP ASP A . n A 1 74 CYS 74 95 95 CYS CYS A . n A 1 75 LYS 75 96 96 LYS LYS A . n A 1 76 VAL 76 97 97 VAL VAL A . n A 1 77 GLU 77 98 98 GLU GLU A . n A 1 78 THR 78 99 99 THR THR A . n A 1 79 HIS 79 100 100 HIS HIS A . n A 1 80 ALA 80 101 101 ALA ALA A . n A 1 81 GLU 81 102 102 GLU GLU A . n A 1 82 GLN 82 103 103 GLN GLN A . n A 1 83 PRO 83 104 104 PRO PRO A . n A 1 84 GLY 84 105 105 GLY GLY A . n A 1 85 SER 85 106 106 SER SER A . n A 1 86 ASN 86 107 107 ASN ASN A . n A 1 87 ALA 87 108 108 ALA ALA A . n A 1 88 TYR 88 109 109 TYR TYR A . n A 1 89 GLN 89 110 110 GLN GLN A . n A 1 90 ILE 90 111 111 ILE ILE A . n A 1 91 ALA 91 112 112 ALA ALA A . n A 1 92 TRP 92 113 113 TRP TRP A . n A 1 93 ASN 93 114 114 ASN ASN A . n A 1 94 SER 94 115 115 SER SER A . n A 1 95 CYS 95 116 116 CYS CYS A . n A 1 96 ILE 96 117 117 ILE ILE A . n A 1 97 ALA 97 118 118 ALA ALA A . n A 1 98 GLN 98 119 119 GLN GLN A . n A 1 99 ARG 99 120 120 ARG ARG A . n A 1 100 SER 100 121 121 SER SER A . n A 1 101 ASP 101 122 122 ASP ASP A . n A 1 102 GLU 102 123 123 GLU GLU A . n A 1 103 ARG 103 124 124 ARG ARG A . n A 1 104 ALA 104 125 125 ALA ALA A . n A 1 105 GLU 105 126 126 GLU GLU A . n A 1 106 TYR 106 127 127 TYR TYR A . n A 1 107 LEU 107 128 128 LEU LEU A . n A 1 108 ARG 108 129 129 ARG ARG A . n A 1 109 SER 109 130 130 SER SER A . n A 1 110 LEU 110 131 131 LEU LEU A . n A 1 111 GLY 111 132 132 GLY GLY A . n A 1 112 SER 112 133 133 SER SER A . n A 1 113 GLN 113 134 134 GLN GLN A . n A 1 114 ASN 114 135 135 ASN ASN A . n A 1 115 SER 115 136 ? ? ? A . n A 1 116 ASP 116 137 ? ? ? A . n A 1 117 GLU 117 138 ? ? ? A . n A 1 118 PRO 118 139 ? ? ? A . n A 1 119 ALA 119 140 ? ? ? A . n A 1 120 PRO 120 141 ? ? ? A . n A 1 121 GLU 121 142 ? ? ? A . n A 1 122 ASP 122 143 ? ? ? A . n B 1 1 GLY 1 22 ? ? ? B . n B 1 2 ALA 2 23 ? ? ? B . n B 1 3 ASP 3 24 ? ? ? B . n B 1 4 GLU 4 25 ? ? ? B . n B 1 5 GLU 5 26 ? ? ? B . n B 1 6 GLU 6 27 ? ? ? B . n B 1 7 SER 7 28 ? ? ? B . n B 1 8 THR 8 29 ? ? ? B . n B 1 9 PRO 9 30 ? ? ? B . n B 1 10 CYS 10 31 ? ? ? B . n B 1 11 ASP 11 32 ? ? ? B . n B 1 12 ASN 12 33 ? ? ? B . n B 1 13 VAL 13 34 ? ? ? B . n B 1 14 GLU 14 35 ? ? ? B . n B 1 15 THR 15 36 ? ? ? B . n B 1 16 ASP 16 37 37 ASP ASP B . n B 1 17 GLN 17 38 38 GLN GLN B . n B 1 18 GLN 18 39 39 GLN GLN B . n B 1 19 THR 19 40 40 THR THR B . n B 1 20 PHE 20 41 41 PHE PHE B . n B 1 21 ALA 21 42 42 ALA ALA B . n B 1 22 CYS 22 43 43 CYS CYS B . n B 1 23 ALA 23 44 44 ALA ALA B . n B 1 24 ALA 24 45 45 ALA ALA B . n B 1 25 PHE 25 46 46 PHE PHE B . n B 1 26 ASN 26 47 47 ASN ASN B . n B 1 27 LYS 27 48 48 LYS LYS B . n B 1 28 GLN 28 49 49 GLN GLN B . n B 1 29 VAL 29 50 50 VAL VAL B . n B 1 30 ALA 30 51 51 ALA ALA B . n B 1 31 GLU 31 52 52 GLU GLU B . n B 1 32 ARG 32 53 53 ARG ARG B . n B 1 33 GLU 33 54 54 GLU GLU B . n B 1 34 LEU 34 55 55 LEU LEU B . n B 1 35 GLN 35 56 56 GLN GLN B . n B 1 36 SER 36 57 57 SER SER B . n B 1 37 ALA 37 58 58 ALA ALA B . n B 1 38 TYR 38 59 59 TYR TYR B . n B 1 39 ASP 39 60 60 ASP ASP B . n B 1 40 GLU 40 61 61 GLU GLU B . n B 1 41 LEU 41 62 62 LEU LEU B . n B 1 42 ILE 42 63 63 ILE ILE B . n B 1 43 GLU 43 64 64 GLU GLU B . n B 1 44 ARG 44 65 65 ARG ARG B . n B 1 45 MSE 45 66 66 MSE MSE B . n B 1 46 ARG 46 67 67 ARG ARG B . n B 1 47 ASP 47 68 68 ASP ASP B . n B 1 48 GLN 48 69 69 GLN GLN B . n B 1 49 PHE 49 70 70 PHE PHE B . n B 1 50 GLY 50 71 71 GLY GLY B . n B 1 51 ASP 51 72 72 ASP ASP B . n B 1 52 GLU 52 73 73 GLU GLU B . n B 1 53 ALA 53 74 74 ALA ALA B . n B 1 54 GLY 54 75 75 GLY GLY B . n B 1 55 LEU 55 76 76 LEU LEU B . n B 1 56 MSE 56 77 77 MSE MSE B . n B 1 57 SER 57 78 78 SER SER B . n B 1 58 ARG 58 79 79 ARG ARG B . n B 1 59 ILE 59 80 80 ILE ILE B . n B 1 60 GLU 60 81 81 GLU GLU B . n B 1 61 ALA 61 82 82 ALA ALA B . n B 1 62 ALA 62 83 83 ALA ALA B . n B 1 63 GLU 63 84 84 GLU GLU B . n B 1 64 LYS 64 85 85 LYS LYS B . n B 1 65 VAL 65 86 86 VAL VAL B . n B 1 66 TRP 66 87 87 TRP TRP B . n B 1 67 SER 67 88 88 SER SER B . n B 1 68 GLN 68 89 89 GLN GLN B . n B 1 69 LEU 69 90 90 LEU LEU B . n B 1 70 ARG 70 91 91 ARG ARG B . n B 1 71 ASP 71 92 92 ASP ASP B . n B 1 72 ALA 72 93 93 ALA ALA B . n B 1 73 ASP 73 94 94 ASP ASP B . n B 1 74 CYS 74 95 95 CYS CYS B . n B 1 75 LYS 75 96 96 LYS LYS B . n B 1 76 VAL 76 97 97 VAL VAL B . n B 1 77 GLU 77 98 98 GLU GLU B . n B 1 78 THR 78 99 99 THR THR B . n B 1 79 HIS 79 100 100 HIS HIS B . n B 1 80 ALA 80 101 101 ALA ALA B . n B 1 81 GLU 81 102 102 GLU GLU B . n B 1 82 GLN 82 103 103 GLN GLN B . n B 1 83 PRO 83 104 104 PRO PRO B . n B 1 84 GLY 84 105 105 GLY GLY B . n B 1 85 SER 85 106 106 SER SER B . n B 1 86 ASN 86 107 107 ASN ASN B . n B 1 87 ALA 87 108 108 ALA ALA B . n B 1 88 TYR 88 109 109 TYR TYR B . n B 1 89 GLN 89 110 110 GLN GLN B . n B 1 90 ILE 90 111 111 ILE ILE B . n B 1 91 ALA 91 112 112 ALA ALA B . n B 1 92 TRP 92 113 113 TRP TRP B . n B 1 93 ASN 93 114 114 ASN ASN B . n B 1 94 SER 94 115 115 SER SER B . n B 1 95 CYS 95 116 116 CYS CYS B . n B 1 96 ILE 96 117 117 ILE ILE B . n B 1 97 ALA 97 118 118 ALA ALA B . n B 1 98 GLN 98 119 119 GLN GLN B . n B 1 99 ARG 99 120 120 ARG ARG B . n B 1 100 SER 100 121 121 SER SER B . n B 1 101 ASP 101 122 122 ASP ASP B . n B 1 102 GLU 102 123 123 GLU GLU B . n B 1 103 ARG 103 124 124 ARG ARG B . n B 1 104 ALA 104 125 125 ALA ALA B . n B 1 105 GLU 105 126 126 GLU GLU B . n B 1 106 TYR 106 127 127 TYR TYR B . n B 1 107 LEU 107 128 128 LEU LEU B . n B 1 108 ARG 108 129 129 ARG ARG B . n B 1 109 SER 109 130 130 SER SER B . n B 1 110 LEU 110 131 131 LEU LEU B . n B 1 111 GLY 111 132 132 GLY GLY B . n B 1 112 SER 112 133 133 SER SER B . n B 1 113 GLN 113 134 134 GLN GLN B . n B 1 114 ASN 114 135 ? ? ? B . n B 1 115 SER 115 136 ? ? ? B . n B 1 116 ASP 116 137 ? ? ? B . n B 1 117 GLU 117 138 ? ? ? B . n B 1 118 PRO 118 139 ? ? ? B . n B 1 119 ALA 119 140 ? ? ? B . n B 1 120 PRO 120 141 ? ? ? B . n B 1 121 GLU 121 142 ? ? ? B . n B 1 122 ASP 122 143 ? ? ? B . n # _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 UNL 1 201 201 UNL UNL A . D 3 SO4 1 202 203 SO4 SO4 A . E 3 SO4 1 203 204 SO4 SO4 A . F 2 UNL 1 201 202 UNL UNL B . G 3 SO4 1 202 201 SO4 SO4 B . H 3 SO4 1 203 202 SO4 SO4 B . I 3 SO4 1 204 203 SO4 SO4 B . J 4 HOH 1 205 8 HOH HOH A . J 4 HOH 2 206 12 HOH HOH A . J 4 HOH 3 207 13 HOH HOH A . J 4 HOH 4 208 19 HOH HOH A . J 4 HOH 5 209 20 HOH HOH A . J 4 HOH 6 210 21 HOH HOH A . J 4 HOH 7 211 23 HOH HOH A . J 4 HOH 8 212 24 HOH HOH A . J 4 HOH 9 213 25 HOH HOH A . J 4 HOH 10 214 147 HOH HOH A . J 4 HOH 11 215 26 HOH HOH A . J 4 HOH 12 216 149 HOH HOH A . J 4 HOH 13 217 150 HOH HOH A . J 4 HOH 14 218 27 HOH HOH A . J 4 HOH 15 219 28 HOH HOH A . J 4 HOH 16 220 153 HOH HOH A . J 4 HOH 17 221 29 HOH HOH A . J 4 HOH 18 222 155 HOH HOH A . J 4 HOH 19 223 31 HOH HOH A . J 4 HOH 20 224 157 HOH HOH A . J 4 HOH 21 225 33 HOH HOH A . J 4 HOH 22 226 159 HOH HOH A . J 4 HOH 23 227 35 HOH HOH A . J 4 HOH 24 228 36 HOH HOH A . J 4 HOH 25 229 162 HOH HOH A . J 4 HOH 26 230 37 HOH HOH A . J 4 HOH 27 231 164 HOH HOH A . J 4 HOH 28 232 165 HOH HOH A . J 4 HOH 29 233 38 HOH HOH A . J 4 HOH 30 234 43 HOH HOH A . J 4 HOH 31 235 168 HOH HOH A . J 4 HOH 32 236 169 HOH HOH A . J 4 HOH 33 237 170 HOH HOH A . J 4 HOH 34 238 44 HOH HOH A . J 4 HOH 35 239 45 HOH HOH A . J 4 HOH 36 240 173 HOH HOH A . J 4 HOH 37 241 174 HOH HOH A . J 4 HOH 38 242 175 HOH HOH A . J 4 HOH 39 243 176 HOH HOH A . J 4 HOH 40 244 177 HOH HOH A . J 4 HOH 41 245 46 HOH HOH A . J 4 HOH 42 246 48 HOH HOH A . J 4 HOH 43 247 180 HOH HOH A . J 4 HOH 44 248 49 HOH HOH A . J 4 HOH 45 249 51 HOH HOH A . J 4 HOH 46 250 52 HOH HOH A . J 4 HOH 47 251 54 HOH HOH A . J 4 HOH 48 252 56 HOH HOH A . J 4 HOH 49 253 57 HOH HOH A . J 4 HOH 50 254 58 HOH HOH A . J 4 HOH 51 255 63 HOH HOH A . J 4 HOH 52 256 64 HOH HOH A . J 4 HOH 53 257 65 HOH HOH A . J 4 HOH 54 258 66 HOH HOH A . J 4 HOH 55 259 67 HOH HOH A . J 4 HOH 56 260 68 HOH HOH A . J 4 HOH 57 261 71 HOH HOH A . J 4 HOH 58 262 72 HOH HOH A . J 4 HOH 59 263 73 HOH HOH A . J 4 HOH 60 264 79 HOH HOH A . J 4 HOH 61 265 81 HOH HOH A . J 4 HOH 62 266 82 HOH HOH A . J 4 HOH 63 267 83 HOH HOH A . J 4 HOH 64 268 89 HOH HOH A . J 4 HOH 65 269 90 HOH HOH A . J 4 HOH 66 270 92 HOH HOH A . J 4 HOH 67 271 95 HOH HOH A . J 4 HOH 68 272 96 HOH HOH A . J 4 HOH 69 273 97 HOH HOH A . J 4 HOH 70 274 98 HOH HOH A . J 4 HOH 71 275 99 HOH HOH A . J 4 HOH 72 276 100 HOH HOH A . J 4 HOH 73 277 102 HOH HOH A . J 4 HOH 74 278 106 HOH HOH A . J 4 HOH 75 279 107 HOH HOH A . J 4 HOH 76 280 108 HOH HOH A . J 4 HOH 77 281 110 HOH HOH A . J 4 HOH 78 282 111 HOH HOH A . J 4 HOH 79 283 112 HOH HOH A . J 4 HOH 80 284 115 HOH HOH A . J 4 HOH 81 285 116 HOH HOH A . J 4 HOH 82 286 118 HOH HOH A . J 4 HOH 83 287 120 HOH HOH A . J 4 HOH 84 288 122 HOH HOH A . J 4 HOH 85 289 123 HOH HOH A . J 4 HOH 86 290 124 HOH HOH A . J 4 HOH 87 291 126 HOH HOH A . J 4 HOH 88 292 127 HOH HOH A . J 4 HOH 89 293 128 HOH HOH A . J 4 HOH 90 294 129 HOH HOH A . J 4 HOH 91 295 132 HOH HOH A . J 4 HOH 92 296 137 HOH HOH A . J 4 HOH 93 297 138 HOH HOH A . J 4 HOH 94 298 140 HOH HOH A . J 4 HOH 95 299 142 HOH HOH A . K 4 HOH 1 205 9 HOH HOH B . K 4 HOH 2 206 10 HOH HOH B . K 4 HOH 3 207 11 HOH HOH B . K 4 HOH 4 208 14 HOH HOH B . K 4 HOH 5 209 15 HOH HOH B . K 4 HOH 6 210 16 HOH HOH B . K 4 HOH 7 211 17 HOH HOH B . K 4 HOH 8 212 18 HOH HOH B . K 4 HOH 9 213 145 HOH HOH B . K 4 HOH 10 214 146 HOH HOH B . K 4 HOH 11 215 22 HOH HOH B . K 4 HOH 12 216 148 HOH HOH B . K 4 HOH 13 217 30 HOH HOH B . K 4 HOH 14 218 32 HOH HOH B . K 4 HOH 15 219 151 HOH HOH B . K 4 HOH 16 220 152 HOH HOH B . K 4 HOH 17 221 34 HOH HOH B . K 4 HOH 18 222 154 HOH HOH B . K 4 HOH 19 223 39 HOH HOH B . K 4 HOH 20 224 156 HOH HOH B . K 4 HOH 21 225 40 HOH HOH B . K 4 HOH 22 226 158 HOH HOH B . K 4 HOH 23 227 41 HOH HOH B . K 4 HOH 24 228 160 HOH HOH B . K 4 HOH 25 229 161 HOH HOH B . K 4 HOH 26 230 42 HOH HOH B . K 4 HOH 27 231 163 HOH HOH B . K 4 HOH 28 232 47 HOH HOH B . K 4 HOH 29 233 50 HOH HOH B . K 4 HOH 30 234 166 HOH HOH B . K 4 HOH 31 235 167 HOH HOH B . K 4 HOH 32 236 53 HOH HOH B . K 4 HOH 33 237 55 HOH HOH B . K 4 HOH 34 239 59 HOH HOH B . K 4 HOH 35 240 171 HOH HOH B . K 4 HOH 36 241 172 HOH HOH B . K 4 HOH 37 242 60 HOH HOH B . K 4 HOH 38 243 61 HOH HOH B . K 4 HOH 39 244 62 HOH HOH B . K 4 HOH 40 245 69 HOH HOH B . K 4 HOH 41 246 70 HOH HOH B . K 4 HOH 42 247 178 HOH HOH B . K 4 HOH 43 248 179 HOH HOH B . K 4 HOH 44 249 74 HOH HOH B . K 4 HOH 45 250 181 HOH HOH B . K 4 HOH 46 251 75 HOH HOH B . K 4 HOH 47 252 76 HOH HOH B . K 4 HOH 48 253 77 HOH HOH B . K 4 HOH 49 254 78 HOH HOH B . K 4 HOH 50 255 80 HOH HOH B . K 4 HOH 51 256 84 HOH HOH B . K 4 HOH 52 257 85 HOH HOH B . K 4 HOH 53 258 86 HOH HOH B . K 4 HOH 54 259 87 HOH HOH B . K 4 HOH 55 260 88 HOH HOH B . K 4 HOH 56 261 91 HOH HOH B . K 4 HOH 57 262 93 HOH HOH B . K 4 HOH 58 263 94 HOH HOH B . K 4 HOH 59 264 101 HOH HOH B . K 4 HOH 60 265 103 HOH HOH B . K 4 HOH 61 266 104 HOH HOH B . K 4 HOH 62 267 105 HOH HOH B . K 4 HOH 63 268 109 HOH HOH B . K 4 HOH 64 269 113 HOH HOH B . K 4 HOH 65 270 114 HOH HOH B . K 4 HOH 66 271 117 HOH HOH B . K 4 HOH 67 272 119 HOH HOH B . K 4 HOH 68 273 121 HOH HOH B . K 4 HOH 69 274 125 HOH HOH B . K 4 HOH 70 275 130 HOH HOH B . K 4 HOH 71 276 131 HOH HOH B . K 4 HOH 72 277 133 HOH HOH B . K 4 HOH 73 278 134 HOH HOH B . K 4 HOH 74 279 135 HOH HOH B . K 4 HOH 75 280 136 HOH HOH B . K 4 HOH 76 281 139 HOH HOH B . K 4 HOH 77 282 141 HOH HOH B . K 4 HOH 78 283 143 HOH HOH B . K 4 HOH 79 284 144 HOH HOH B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 45 A MSE 66 ? MET SELENOMETHIONINE 2 A MSE 56 A MSE 77 ? MET SELENOMETHIONINE 3 B MSE 45 B MSE 66 ? MET SELENOMETHIONINE 4 B MSE 56 B MSE 77 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 7120 ? 1 MORE -38.5 ? 1 'SSA (A^2)' 19030 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 7_555 y,x,-z 0.0000000000 1.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-03-31 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-11-01 4 'Structure model' 1 3 2019-07-24 5 'Structure model' 1 4 2023-02-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Source and taxonomy' 3 2 'Structure model' 'Version format compliance' 4 3 'Structure model' 'Refinement description' 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Derived calculations' 7 4 'Structure model' 'Refinement description' 8 5 'Structure model' 'Database references' 9 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' software 3 4 'Structure model' struct_conn 4 5 'Structure model' database_2 5 5 'Structure model' struct_ref_seq_dif 6 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.name' 3 4 'Structure model' '_software.classification' 4 4 'Structure model' '_software.contact_author' 5 4 'Structure model' '_software.contact_author_email' 6 4 'Structure model' '_software.language' 7 4 'Structure model' '_software.location' 8 4 'Structure model' '_software.name' 9 4 'Structure model' '_software.type' 10 4 'Structure model' '_software.version' 11 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 12 5 'Structure model' '_database_2.pdbx_DOI' 13 5 'Structure model' '_database_2.pdbx_database_accession' 14 5 'Structure model' '_struct_ref_seq_dif.details' 15 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 16 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 17 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 35.5657 25.2998 6.9905 0.0406 0.0586 0.0694 0.0176 -0.0348 -0.0070 1.4365 1.2344 1.3459 0.5577 -0.9196 -0.3369 0.0130 0.0322 -0.0452 -0.1054 0.0262 -0.2417 0.1760 0.0182 -0.0662 'X-RAY DIFFRACTION' 2 ? refined 26.2733 10.9451 -0.8596 0.0344 0.0151 0.0391 0.0097 0.0148 0.0100 2.6925 2.0696 1.6707 1.1379 -0.7163 -0.5200 0.0049 0.1081 -0.1130 0.0622 -0.1867 -0.0761 -0.0890 0.0112 -0.0875 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 33 ? 1 1 A A 135 . . . . ? 'X-RAY DIFFRACTION' 37 ? 2 2 B B 134 . . . . ? # _phasing.method MAD # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal REFMAC 5.5.0070 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 1 PHENIX . ? package 'P.D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 2 SHELX . ? package 'George M. Sheldrick' gsheldr@shelx.uni-ac.gwdg.de phasing http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 3 MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 4 SCALA 3.2.5 5/04/2004 other 'Phil R. Evans' pre@mrc-lmb.cam.ac.uk 'data scaling' http://www.ccp4.ac.uk/dist/html/scala.html Fortran_77 ? 5 PDB_EXTRACT 3.006 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 6 MAR345 CCD ? ? ? ? 'data collection' ? ? ? 7 MOSFLM . ? ? ? ? 'data reduction' ? ? ? 8 SHELXD . ? ? ? ? phasing ? ? ? 9 autoSHARP . ? ? ? ? phasing ? ? ? 10 # _pdbx_entry_details.entry_id 3GI7 _pdbx_entry_details.sequence_details ;THE CONSTRUCT (RESIDUES 23-143) WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. ; _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 NH1 A ARG 120 ? B O2 A UNL 201 ? ? 2.04 2 1 NH1 A ARG 120 ? C O4 A UNL 201 ? ? 2.08 3 1 NH1 B ARG 120 ? B O4 B UNL 201 ? ? 2.17 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 CB _pdbx_validate_rmsd_bond.auth_asym_id_1 B _pdbx_validate_rmsd_bond.auth_comp_id_1 CYS _pdbx_validate_rmsd_bond.auth_seq_id_1 95 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 SG _pdbx_validate_rmsd_bond.auth_asym_id_2 B _pdbx_validate_rmsd_bond.auth_comp_id_2 CYS _pdbx_validate_rmsd_bond.auth_seq_id_2 95 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.931 _pdbx_validate_rmsd_bond.bond_target_value 1.818 _pdbx_validate_rmsd_bond.bond_deviation 0.113 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.017 _pdbx_validate_rmsd_bond.linker_flag N # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 CB _pdbx_validate_rmsd_angle.auth_asym_id_1 B _pdbx_validate_rmsd_angle.auth_comp_id_1 ARG _pdbx_validate_rmsd_angle.auth_seq_id_1 120 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 C _pdbx_validate_rmsd_angle.auth_atom_id_2 CA _pdbx_validate_rmsd_angle.auth_asym_id_2 B _pdbx_validate_rmsd_angle.auth_comp_id_2 ARG _pdbx_validate_rmsd_angle.auth_seq_id_2 120 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 C _pdbx_validate_rmsd_angle.auth_atom_id_3 C _pdbx_validate_rmsd_angle.auth_asym_id_3 B _pdbx_validate_rmsd_angle.auth_comp_id_3 ARG _pdbx_validate_rmsd_angle.auth_seq_id_3 120 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 123.84 _pdbx_validate_rmsd_angle.angle_target_value 110.40 _pdbx_validate_rmsd_angle.angle_deviation 13.44 _pdbx_validate_rmsd_angle.angle_standard_deviation 2.00 _pdbx_validate_rmsd_angle.linker_flag N # _pdbx_validate_chiral.id 1 _pdbx_validate_chiral.PDB_model_num 1 _pdbx_validate_chiral.auth_atom_id CA _pdbx_validate_chiral.label_alt_id C _pdbx_validate_chiral.auth_asym_id B _pdbx_validate_chiral.auth_comp_id ARG _pdbx_validate_chiral.auth_seq_id 120 _pdbx_validate_chiral.PDB_ins_code ? _pdbx_validate_chiral.details PLANAR _pdbx_validate_chiral.omega . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ASN 33 ? CG ? A ASN 12 CG 2 1 Y 1 A ASN 33 ? OD1 ? A ASN 12 OD1 3 1 Y 1 A ASN 33 ? ND2 ? A ASN 12 ND2 4 1 Y 1 A GLU 35 ? CD ? A GLU 14 CD 5 1 Y 1 A GLU 35 ? OE1 ? A GLU 14 OE1 6 1 Y 1 A GLU 35 ? OE2 ? A GLU 14 OE2 7 1 Y 1 A ARG 53 ? CD ? A ARG 32 CD 8 1 Y 1 A ARG 53 ? NE ? A ARG 32 NE 9 1 Y 1 A ARG 53 ? CZ ? A ARG 32 CZ 10 1 Y 1 A ARG 53 ? NH1 ? A ARG 32 NH1 11 1 Y 1 A ARG 53 ? NH2 ? A ARG 32 NH2 12 1 Y 1 A GLU 64 ? CD ? A GLU 43 CD 13 1 Y 1 A GLU 64 ? OE1 ? A GLU 43 OE1 14 1 Y 1 A GLU 64 ? OE2 ? A GLU 43 OE2 15 1 Y 1 A ASN 135 ? CG ? A ASN 114 CG 16 1 Y 1 A ASN 135 ? OD1 ? A ASN 114 OD1 17 1 Y 1 A ASN 135 ? ND2 ? A ASN 114 ND2 18 1 Y 1 B GLN 38 ? CD ? B GLN 17 CD 19 1 Y 1 B GLN 38 ? OE1 ? B GLN 17 OE1 20 1 Y 1 B GLN 38 ? NE2 ? B GLN 17 NE2 21 1 Y 1 B GLN 39 ? CG ? B GLN 18 CG 22 1 Y 1 B GLN 39 ? CD ? B GLN 18 CD 23 1 Y 1 B GLN 39 ? OE1 ? B GLN 18 OE1 24 1 Y 1 B GLN 39 ? NE2 ? B GLN 18 NE2 25 1 Y 1 B ARG 53 ? CD ? B ARG 32 CD 26 1 Y 1 B ARG 53 ? NE ? B ARG 32 NE 27 1 Y 1 B ARG 53 ? CZ ? B ARG 32 CZ 28 1 Y 1 B ARG 53 ? NH1 ? B ARG 32 NH1 29 1 Y 1 B ARG 53 ? NH2 ? B ARG 32 NH2 30 1 Y 1 B ASP 72 ? CG ? B ASP 51 CG 31 1 Y 1 B ASP 72 ? OD1 ? B ASP 51 OD1 32 1 Y 1 B ASP 72 ? OD2 ? B ASP 51 OD2 33 1 Y 1 B GLN 103 ? CG ? B GLN 82 CG 34 1 Y 1 B GLN 103 ? CD ? B GLN 82 CD 35 1 Y 1 B GLN 103 ? OE1 ? B GLN 82 OE1 36 1 Y 1 B GLN 103 ? NE2 ? B GLN 82 NE2 37 1 Y 1 B GLN 134 ? CG ? B GLN 113 CG 38 1 Y 1 B GLN 134 ? CD ? B GLN 113 CD 39 1 Y 1 B GLN 134 ? OE1 ? B GLN 113 OE1 40 1 Y 1 B GLN 134 ? NE2 ? B GLN 113 NE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 22 ? A GLY 1 2 1 Y 1 A ALA 23 ? A ALA 2 3 1 Y 1 A ASP 24 ? A ASP 3 4 1 Y 1 A GLU 25 ? A GLU 4 5 1 Y 1 A GLU 26 ? A GLU 5 6 1 Y 1 A GLU 27 ? A GLU 6 7 1 Y 1 A SER 28 ? A SER 7 8 1 Y 1 A THR 29 ? A THR 8 9 1 Y 1 A PRO 30 ? A PRO 9 10 1 Y 1 A CYS 31 ? A CYS 10 11 1 Y 1 A ASP 32 ? A ASP 11 12 1 Y 1 A SER 136 ? A SER 115 13 1 Y 1 A ASP 137 ? A ASP 116 14 1 Y 1 A GLU 138 ? A GLU 117 15 1 Y 1 A PRO 139 ? A PRO 118 16 1 Y 1 A ALA 140 ? A ALA 119 17 1 Y 1 A PRO 141 ? A PRO 120 18 1 Y 1 A GLU 142 ? A GLU 121 19 1 Y 1 A ASP 143 ? A ASP 122 20 1 Y 1 B GLY 22 ? B GLY 1 21 1 Y 1 B ALA 23 ? B ALA 2 22 1 Y 1 B ASP 24 ? B ASP 3 23 1 Y 1 B GLU 25 ? B GLU 4 24 1 Y 1 B GLU 26 ? B GLU 5 25 1 Y 1 B GLU 27 ? B GLU 6 26 1 Y 1 B SER 28 ? B SER 7 27 1 Y 1 B THR 29 ? B THR 8 28 1 Y 1 B PRO 30 ? B PRO 9 29 1 Y 1 B CYS 31 ? B CYS 10 30 1 Y 1 B ASP 32 ? B ASP 11 31 1 Y 1 B ASN 33 ? B ASN 12 32 1 Y 1 B VAL 34 ? B VAL 13 33 1 Y 1 B GLU 35 ? B GLU 14 34 1 Y 1 B THR 36 ? B THR 15 35 1 Y 1 B ASN 135 ? B ASN 114 36 1 Y 1 B SER 136 ? B SER 115 37 1 Y 1 B ASP 137 ? B ASP 116 38 1 Y 1 B GLU 138 ? B GLU 117 39 1 Y 1 B PRO 139 ? B PRO 118 40 1 Y 1 B ALA 140 ? B ALA 119 41 1 Y 1 B PRO 141 ? B PRO 120 42 1 Y 1 B GLU 142 ? B GLU 121 43 1 Y 1 B ASP 143 ? B ASP 122 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'UNKNOWN LIGAND' UNL 3 'SULFATE ION' SO4 4 water HOH #