HEADER UNKNOWN FUNCTION 05-MAR-09 3GI7 TITLE CRYSTAL STRUCTURE OF A DUF1311 FAMILY PROTEIN (PP0307) FROM TITLE 2 PSEUDOMONAS PUTIDA KT2440 AT 1.85 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: SECRETED PROTEIN OF UNKNOWN FUNCTION DUF1311; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 23-143; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS PUTIDA; SOURCE 3 ORGANISM_TAXID: 160488; SOURCE 4 STRAIN: KT2440; SOURCE 5 GENE: NP_742474.1, PP0307, PP_0307; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDETS KEYWDS SECRETED PROTEIN, STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL KEYWDS 2 GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-2, UNKNOWN KEYWDS 3 FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 6 01-FEB-23 3GI7 1 REMARK SEQADV REVDAT 5 24-JUL-19 3GI7 1 REMARK LINK REVDAT 4 01-NOV-17 3GI7 1 REMARK REVDAT 3 13-JUL-11 3GI7 1 VERSN REVDAT 2 23-MAR-11 3GI7 1 HEADER TITLE KEYWDS REVDAT 1 31-MAR-09 3GI7 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF SECRETED PROTEIN OF UNKNOWN FUNCTION JRNL TITL 2 (DUF1311) (NP_742474.1) FROM PSEUDOMONAS PUTIDA KT2440 AT JRNL TITL 3 1.85 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0070 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.17 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 25827 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1314 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1771 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2790 REMARK 3 BIN FREE R VALUE SET COUNT : 106 REMARK 3 BIN FREE R VALUE : 0.3380 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1561 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 33 REMARK 3 SOLVENT ATOMS : 174 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 31.63 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.29 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.17000 REMARK 3 B22 (A**2) : 0.17000 REMARK 3 B33 (A**2) : -0.33000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.114 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.105 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.066 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.871 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.953 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1791 ; 0.018 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 1240 ; 0.007 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2454 ; 1.486 ; 1.944 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3007 ; 1.178 ; 3.003 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 244 ; 4.235 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 110 ;33.536 ;24.364 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 320 ;12.441 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;19.668 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 252 ; 0.151 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2113 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 389 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1078 ; 1.798 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 433 ; 0.717 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1730 ; 2.862 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 713 ; 5.423 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 699 ; 7.981 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 1 A 143 5 REMARK 3 1 B 1 B 143 5 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 580 ; 0.350 ; 0.500 REMARK 3 LOOSE POSITIONAL 1 A (A): 755 ; 0.620 ; 5.000 REMARK 3 MEDIUM THERMAL 1 A (A**2): 580 ; 1.210 ; 2.000 REMARK 3 LOOSE THERMAL 1 A (A**2): 755 ; 1.320 ;10.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 33 A 135 REMARK 3 ORIGIN FOR THE GROUP (A): 35.5657 25.2998 6.9905 REMARK 3 T TENSOR REMARK 3 T11: 0.0406 T22: 0.0586 REMARK 3 T33: 0.0694 T12: 0.0176 REMARK 3 T13: -0.0348 T23: -0.0070 REMARK 3 L TENSOR REMARK 3 L11: 1.4365 L22: 1.2344 REMARK 3 L33: 1.3459 L12: 0.5577 REMARK 3 L13: -0.9196 L23: -0.3369 REMARK 3 S TENSOR REMARK 3 S11: 0.0130 S12: -0.1054 S13: 0.0262 REMARK 3 S21: 0.1760 S22: 0.0322 S23: -0.2417 REMARK 3 S31: 0.0182 S32: -0.0662 S33: -0.0452 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 37 B 134 REMARK 3 ORIGIN FOR THE GROUP (A): 26.2733 10.9451 -0.8596 REMARK 3 T TENSOR REMARK 3 T11: 0.0344 T22: 0.0151 REMARK 3 T33: 0.0391 T12: 0.0097 REMARK 3 T13: 0.0148 T23: 0.0100 REMARK 3 L TENSOR REMARK 3 L11: 2.6925 L22: 2.0696 REMARK 3 L33: 1.6707 L12: 1.1379 REMARK 3 L13: -0.7163 L23: -0.5200 REMARK 3 S TENSOR REMARK 3 S11: 0.0049 S12: 0.0622 S13: -0.1867 REMARK 3 S21: -0.0890 S22: 0.1081 S23: -0.0761 REMARK 3 S31: 0.0112 S32: -0.0875 S33: -0.1130 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. A MET-INHIBITION PROTOCOL WAS USED FOR REMARK 3 SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE REMARK 3 OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 3. ATOM RECORDS CONTAIN RESIDUAL B FACTORS ONLY. REMARK 3 4. SULFATE (SO4) MODELED IS PRESENT IN CRYSTALLIZATION REMARK 3 CONDITIONS. 5. AN UNKNOWN LIGAND (UNL) WAS MODELED NEAR THE REMARK 3 CONSERVED RESIDUE ARG 120. THE DENSITY IS DISORDERED IN THIS REMARK 3 REGION. REMARK 4 REMARK 4 3GI7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-MAR-09. REMARK 100 THE DEPOSITION ID IS D_1000051891. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-JAN-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.67 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91162, 0.97964, 0.97949 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : FLAT COLLIMATING MIRROR, TOROID REMARK 200 FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.2.5 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25875 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 29.173 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : 0.06500 REMARK 200 FOR THE DATA SET : 18.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.30 REMARK 200 R MERGE FOR SHELL (I) : 0.69200 REMARK 200 R SYM FOR SHELL (I) : 0.69200 REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NANODROP, 2.10M AMMONIUM SULFATE, REMARK 280 0.250M POTASSIUM SODIUM TARTRATE, 0.1M SODIUM CITRATE - CITRIC REMARK 280 ACID PH 5.67, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 29.17150 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 50.01350 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 50.01350 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 14.58575 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 50.01350 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 50.01350 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 43.75725 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 50.01350 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 50.01350 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 14.58575 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 50.01350 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 50.01350 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 43.75725 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 29.17150 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -38.5 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 22 REMARK 465 ALA A 23 REMARK 465 ASP A 24 REMARK 465 GLU A 25 REMARK 465 GLU A 26 REMARK 465 GLU A 27 REMARK 465 SER A 28 REMARK 465 THR A 29 REMARK 465 PRO A 30 REMARK 465 CYS A 31 REMARK 465 ASP A 32 REMARK 465 SER A 136 REMARK 465 ASP A 137 REMARK 465 GLU A 138 REMARK 465 PRO A 139 REMARK 465 ALA A 140 REMARK 465 PRO A 141 REMARK 465 GLU A 142 REMARK 465 ASP A 143 REMARK 465 GLY B 22 REMARK 465 ALA B 23 REMARK 465 ASP B 24 REMARK 465 GLU B 25 REMARK 465 GLU B 26 REMARK 465 GLU B 27 REMARK 465 SER B 28 REMARK 465 THR B 29 REMARK 465 PRO B 30 REMARK 465 CYS B 31 REMARK 465 ASP B 32 REMARK 465 ASN B 33 REMARK 465 VAL B 34 REMARK 465 GLU B 35 REMARK 465 THR B 36 REMARK 465 ASN B 135 REMARK 465 SER B 136 REMARK 465 ASP B 137 REMARK 465 GLU B 138 REMARK 465 PRO B 139 REMARK 465 ALA B 140 REMARK 465 PRO B 141 REMARK 465 GLU B 142 REMARK 465 ASP B 143 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 33 CG OD1 ND2 REMARK 470 GLU A 35 CD OE1 OE2 REMARK 470 ARG A 53 CD NE CZ NH1 NH2 REMARK 470 GLU A 64 CD OE1 OE2 REMARK 470 ASN A 135 CG OD1 ND2 REMARK 470 GLN B 38 CD OE1 NE2 REMARK 470 GLN B 39 CG CD OE1 NE2 REMARK 470 ARG B 53 CD NE CZ NH1 NH2 REMARK 470 ASP B 72 CG OD1 OD2 REMARK 470 GLN B 103 CG CD OE1 NE2 REMARK 470 GLN B 134 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 120 O2 UNL A 201 2.04 REMARK 500 NH1 ARG A 120 O4 UNL A 201 2.08 REMARK 500 NH1 ARG B 120 O4 UNL B 201 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS B 95 CB CYS B 95 SG 0.113 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 120 CB - CA - C ANGL. DEV. = 13.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNL A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNL B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 204 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 365921 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT (RESIDUES 23-143) WAS EXPRESSED WITH A REMARK 999 PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED REMARK 999 WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY REMARK 999 THE TARGET SEQUENCE. DBREF 3GI7 A 23 143 UNP Q88R27 Q88R27_PSEPK 23 143 DBREF 3GI7 B 23 143 UNP Q88R27 Q88R27_PSEPK 23 143 SEQADV 3GI7 GLY A 22 UNP Q88R27 EXPRESSION TAG SEQADV 3GI7 GLY B 22 UNP Q88R27 EXPRESSION TAG SEQRES 1 A 122 GLY ALA ASP GLU GLU GLU SER THR PRO CYS ASP ASN VAL SEQRES 2 A 122 GLU THR ASP GLN GLN THR PHE ALA CYS ALA ALA PHE ASN SEQRES 3 A 122 LYS GLN VAL ALA GLU ARG GLU LEU GLN SER ALA TYR ASP SEQRES 4 A 122 GLU LEU ILE GLU ARG MSE ARG ASP GLN PHE GLY ASP GLU SEQRES 5 A 122 ALA GLY LEU MSE SER ARG ILE GLU ALA ALA GLU LYS VAL SEQRES 6 A 122 TRP SER GLN LEU ARG ASP ALA ASP CYS LYS VAL GLU THR SEQRES 7 A 122 HIS ALA GLU GLN PRO GLY SER ASN ALA TYR GLN ILE ALA SEQRES 8 A 122 TRP ASN SER CYS ILE ALA GLN ARG SER ASP GLU ARG ALA SEQRES 9 A 122 GLU TYR LEU ARG SER LEU GLY SER GLN ASN SER ASP GLU SEQRES 10 A 122 PRO ALA PRO GLU ASP SEQRES 1 B 122 GLY ALA ASP GLU GLU GLU SER THR PRO CYS ASP ASN VAL SEQRES 2 B 122 GLU THR ASP GLN GLN THR PHE ALA CYS ALA ALA PHE ASN SEQRES 3 B 122 LYS GLN VAL ALA GLU ARG GLU LEU GLN SER ALA TYR ASP SEQRES 4 B 122 GLU LEU ILE GLU ARG MSE ARG ASP GLN PHE GLY ASP GLU SEQRES 5 B 122 ALA GLY LEU MSE SER ARG ILE GLU ALA ALA GLU LYS VAL SEQRES 6 B 122 TRP SER GLN LEU ARG ASP ALA ASP CYS LYS VAL GLU THR SEQRES 7 B 122 HIS ALA GLU GLN PRO GLY SER ASN ALA TYR GLN ILE ALA SEQRES 8 B 122 TRP ASN SER CYS ILE ALA GLN ARG SER ASP GLU ARG ALA SEQRES 9 B 122 GLU TYR LEU ARG SER LEU GLY SER GLN ASN SER ASP GLU SEQRES 10 B 122 PRO ALA PRO GLU ASP MODRES 3GI7 MSE A 66 MET SELENOMETHIONINE MODRES 3GI7 MSE A 77 MET SELENOMETHIONINE MODRES 3GI7 MSE B 66 MET SELENOMETHIONINE MODRES 3GI7 MSE B 77 MET SELENOMETHIONINE HET MSE A 66 8 HET MSE A 77 8 HET MSE B 66 8 HET MSE B 77 8 HET UNL A 201 4 HET SO4 A 202 5 HET SO4 A 203 5 HET UNL B 201 4 HET SO4 B 202 5 HET SO4 B 203 5 HET SO4 B 204 5 HETNAM MSE SELENOMETHIONINE HETNAM UNL UNKNOWN LIGAND HETNAM SO4 SULFATE ION FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 4 SO4 5(O4 S 2-) FORMUL 10 HOH *174(H2 O) HELIX 1 1 ASP A 37 GLY A 71 1 35 HELIX 2 2 GLY A 75 THR A 99 1 25 HELIX 3 3 SER A 106 SER A 133 1 28 HELIX 4 4 ASP B 37 GLY B 71 1 35 HELIX 5 5 GLY B 75 THR B 99 1 25 HELIX 6 6 SER B 121 LEU B 131 1 11 SSBOND 1 CYS A 43 CYS A 43 1555 7555 2.22 SSBOND 2 CYS A 95 CYS A 116 1555 1555 2.08 SSBOND 3 CYS B 43 CYS B 43 1555 7555 2.27 SSBOND 4 CYS B 95 CYS B 116 1555 1555 2.10 LINK C ARG A 65 N MSE A 66 1555 1555 1.33 LINK C MSE A 66 N ARG A 67 1555 1555 1.31 LINK C LEU A 76 N MSE A 77 1555 1555 1.33 LINK C MSE A 77 N SER A 78 1555 1555 1.33 LINK C ARG B 65 N MSE B 66 1555 1555 1.33 LINK C MSE B 66 N ARG B 67 1555 1555 1.33 LINK C LEU B 76 N MSE B 77 1555 1555 1.33 LINK C MSE B 77 N SER B 78 1555 1555 1.32 SITE 1 AC1 6 ARG A 120 GLU A 123 GLU B 123 ARG B 124 SITE 2 AC1 6 TYR B 127 HOH B 257 SITE 1 AC2 3 ARG A 79 HOH A 236 LYS B 96 SITE 1 AC3 3 SER A 88 ARG A 91 HOH A 222 SITE 1 AC4 8 GLU A 123 ARG A 124 TYR A 127 HOH A 225 SITE 2 AC4 8 HOH A 270 ARG B 120 GLU B 123 GLU B 126 SITE 1 AC5 5 GLY B 75 LEU B 76 MSE B 77 SER B 78 SITE 2 AC5 5 HOH B 233 SITE 1 AC6 2 LYS A 96 ARG B 79 SITE 1 AC7 3 GLN A 103 ARG B 91 HOH B 270 CRYST1 100.027 100.027 58.343 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009997 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009997 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017140 0.00000