HEADER HYDROLASE 06-MAR-09 3GIU TITLE 1.25 ANGSTROM CRYSTAL STRUCTURE OF PYRROLIDONE-CARBOXYLATE PEPTIDASE TITLE 2 (PCP) FROM STAPHYLOCOCCUS AUREUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PYRROLIDONE-CARBOXYLATE PEPTIDASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: 5-OXOPROLYL-PEPTIDASE, PYROGLUTAMYL-PEPTIDASE I, PGP-I, COMPND 5 PYRASE; COMPND 6 EC: 3.4.19.3; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS SUBSP. AUREUS COL; SOURCE 3 ORGANISM_TAXID: 93062; SOURCE 4 STRAIN: AUREUS COL; SOURCE 5 GENE: PCP, SACOL2714; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS PYRROLIDONE-CARBOXYLATE PEPTIDASE, IDP00836, HYDROLASE, PROTEASE, KEYWDS 2 THIOL PROTEASE, STRUCTURAL GENOMICS, CENTER FOR STRUCTURAL GENOMICS KEYWDS 3 OF INFECTIOUS DISEASES, CSGID EXPDTA X-RAY DIFFRACTION AUTHOR G.MINASOV,Z.WAWRZAK,T.SKARINA,O.ONOPRIYENKO,S.N.PETERSON,A.SAVCHENKO, AUTHOR 2 W.F.ANDERSON,CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES AUTHOR 3 (CSGID) REVDAT 4 01-NOV-17 3GIU 1 REMARK REVDAT 3 13-JUL-11 3GIU 1 VERSN REVDAT 2 27-OCT-09 3GIU 1 AUTHOR JRNL REVDAT 1 17-MAR-09 3GIU 0 JRNL AUTH G.MINASOV,Z.WAWRZAK,T.SKARINA,O.ONOPRIYENKO,S.N.PETERSON, JRNL AUTH 2 A.SAVCHENKO,W.F.ANDERSON, JRNL AUTH 3 CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES JRNL AUTH 4 (CSGID) JRNL TITL 1.25 ANGSTROM CRYSTAL STRUCTURE OF PYRROLIDONE-CARBOXYLATE JRNL TITL 2 PEPTIDASE (PCP) FROM STAPHYLOCOCCUS AUREUS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0044 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.55 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 108305 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.118 REMARK 3 R VALUE (WORKING SET) : 0.116 REMARK 3 FREE R VALUE : 0.148 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5691 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.25 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.28 REMARK 3 REFLECTION IN BIN (WORKING SET) : 7057 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.94 REMARK 3 BIN R VALUE (WORKING SET) : 0.2170 REMARK 3 BIN FREE R VALUE SET COUNT : 369 REMARK 3 BIN FREE R VALUE : 0.2380 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3277 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 68 REMARK 3 SOLVENT ATOMS : 619 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 10.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 9.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.66000 REMARK 3 B22 (A**2) : 0.95000 REMARK 3 B33 (A**2) : -0.29000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.037 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.038 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.024 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.253 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.983 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.975 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3768 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2461 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5186 ; 1.459 ; 1.971 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6144 ; 0.918 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 512 ; 5.398 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 167 ;35.749 ;25.988 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 609 ;10.161 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;11.238 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 598 ; 0.091 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4271 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 663 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2343 ; 1.886 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 919 ; 0.649 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3867 ; 2.713 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1425 ; 3.987 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1290 ; 5.697 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 6229 ; 1.646 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 707 ;17.890 ; 8.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 6115 ; 4.952 ; 8.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 53 REMARK 3 ORIGIN FOR THE GROUP (A): 25.2537 5.8857 -33.7275 REMARK 3 T TENSOR REMARK 3 T11: 0.0367 T22: 0.0529 REMARK 3 T33: 0.0059 T12: -0.0004 REMARK 3 T13: 0.0088 T23: -0.0069 REMARK 3 L TENSOR REMARK 3 L11: 0.9590 L22: 1.1195 REMARK 3 L33: 1.2265 L12: -0.0205 REMARK 3 L13: 0.2340 L23: -0.0109 REMARK 3 S TENSOR REMARK 3 S11: -0.0084 S12: 0.2238 S13: -0.0303 REMARK 3 S21: -0.0725 S22: 0.0014 S23: -0.0374 REMARK 3 S31: -0.0688 S32: 0.0317 S33: 0.0070 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 54 A 172 REMARK 3 ORIGIN FOR THE GROUP (A): 23.9058 7.2369 -21.9235 REMARK 3 T TENSOR REMARK 3 T11: 0.0157 T22: 0.0027 REMARK 3 T33: 0.0061 T12: 0.0003 REMARK 3 T13: -0.0008 T23: 0.0010 REMARK 3 L TENSOR REMARK 3 L11: 0.8206 L22: 0.4175 REMARK 3 L33: 0.9807 L12: 0.0071 REMARK 3 L13: -0.0164 L23: 0.2028 REMARK 3 S TENSOR REMARK 3 S11: -0.0112 S12: 0.0170 S13: 0.0103 REMARK 3 S21: -0.0129 S22: -0.0306 S23: -0.0093 REMARK 3 S31: -0.0534 S32: -0.0176 S33: 0.0418 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 173 A 212 REMARK 3 ORIGIN FOR THE GROUP (A): 15.8078 -3.2572 -23.0809 REMARK 3 T TENSOR REMARK 3 T11: 0.0273 T22: 0.0114 REMARK 3 T33: 0.0404 T12: -0.0116 REMARK 3 T13: -0.0096 T23: 0.0029 REMARK 3 L TENSOR REMARK 3 L11: 0.9033 L22: 0.4235 REMARK 3 L33: 1.4749 L12: -0.3171 REMARK 3 L13: -0.4229 L23: 0.1451 REMARK 3 S TENSOR REMARK 3 S11: -0.0030 S12: 0.0149 S13: -0.1154 REMARK 3 S21: -0.0022 S22: -0.0263 S23: -0.0002 REMARK 3 S31: 0.1217 S32: -0.1172 S33: 0.0293 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 53 REMARK 3 ORIGIN FOR THE GROUP (A): 24.3640 -2.4653 10.0568 REMARK 3 T TENSOR REMARK 3 T11: 0.0303 T22: 0.0358 REMARK 3 T33: 0.0099 T12: 0.0022 REMARK 3 T13: 0.0095 T23: 0.0136 REMARK 3 L TENSOR REMARK 3 L11: 1.3702 L22: 1.1160 REMARK 3 L33: 1.2124 L12: -0.1794 REMARK 3 L13: 0.5230 L23: -0.1364 REMARK 3 S TENSOR REMARK 3 S11: -0.0148 S12: -0.2159 S13: -0.0947 REMARK 3 S21: 0.0885 S22: 0.0278 S23: 0.0328 REMARK 3 S31: -0.0334 S32: -0.1236 S33: -0.0131 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 54 B 172 REMARK 3 ORIGIN FOR THE GROUP (A): 25.6667 3.0491 -0.2521 REMARK 3 T TENSOR REMARK 3 T11: 0.0145 T22: 0.0041 REMARK 3 T33: 0.0060 T12: 0.0023 REMARK 3 T13: -0.0021 T23: -0.0007 REMARK 3 L TENSOR REMARK 3 L11: 0.8250 L22: 0.5732 REMARK 3 L33: 0.7103 L12: -0.0383 REMARK 3 L13: 0.1129 L23: -0.3186 REMARK 3 S TENSOR REMARK 3 S11: -0.0217 S12: -0.0018 S13: 0.0345 REMARK 3 S21: 0.0306 S22: -0.0000 S23: -0.0129 REMARK 3 S31: -0.0543 S32: -0.0459 S33: 0.0217 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 173 B 212 REMARK 3 ORIGIN FOR THE GROUP (A): 33.8192 -7.7219 -2.9213 REMARK 3 T TENSOR REMARK 3 T11: 0.0413 T22: 0.0113 REMARK 3 T33: 0.0381 T12: 0.0091 REMARK 3 T13: -0.0013 T23: -0.0083 REMARK 3 L TENSOR REMARK 3 L11: 0.5963 L22: 0.4132 REMARK 3 L33: 0.7076 L12: 0.2400 REMARK 3 L13: -0.3488 L23: -0.5384 REMARK 3 S TENSOR REMARK 3 S11: -0.0138 S12: 0.0572 S13: -0.0611 REMARK 3 S21: -0.0440 S22: -0.0117 S23: -0.0174 REMARK 3 S31: 0.0667 S32: 0.0140 S33: 0.0255 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3GIU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-MAR-09. REMARK 100 THE DEPOSITION ID IS D_1000051914. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-NOV-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.72900 REMARK 200 MONOCHROMATOR : SI{111} REMARK 200 OPTICS : BERYLLIUM LENSES REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 114545 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.250 REMARK 200 RESOLUTION RANGE LOW (A) : 24.550 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : 0.04700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.1 REMARK 200 DATA REDUNDANCY IN SHELL : 4.50 REMARK 200 R MERGE FOR SHELL (I) : 0.40400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN SOLUTION: 0.3M NACL, 10MM REMARK 280 HEPES PH 7.5; SCREEN SOLUTION: 20% PEG3350, SODIUM ACETATE 0.1M REMARK 280 PH 4.5; CRYO SOLUTION: 7% GLYCEROL, 7% ETHILENE GLYCOL, 7% REMARK 280 SUCROSE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.39500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.95500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.50000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 59.95500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.39500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.50000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4950 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -73.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 SER B -2 REMARK 465 ASN B -1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 32 -12.82 80.33 REMARK 500 PHE A 139 -154.93 -110.65 REMARK 500 HIS A 205 58.58 -91.34 REMARK 500 HIS A 205 58.58 -116.13 REMARK 500 PHE B 139 -153.69 -110.95 REMARK 500 HIS B 155 -34.68 -134.36 REMARK 500 LYS B 176 69.15 -119.30 REMARK 500 THR B 211 -72.05 -56.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 HOH B 497 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 213 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 212 OE2 REMARK 620 2 CYS B 141 SG 121.6 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 213 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY A 214 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A 215 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A 216 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 217 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 213 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY B 214 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG B 215 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 B 216 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 217 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: IDP00836 RELATED DB: TARGETDB DBREF 3GIU A 1 212 UNP Q5HCK7 PCP_STAAC 1 212 DBREF 3GIU B 1 212 UNP Q5HCK7 PCP_STAAC 1 212 SEQADV 3GIU SER A -2 UNP Q5HCK7 EXPRESSION TAG SEQADV 3GIU ASN A -1 UNP Q5HCK7 EXPRESSION TAG SEQADV 3GIU ALA A 0 UNP Q5HCK7 EXPRESSION TAG SEQADV 3GIU SER B -2 UNP Q5HCK7 EXPRESSION TAG SEQADV 3GIU ASN B -1 UNP Q5HCK7 EXPRESSION TAG SEQADV 3GIU ALA B 0 UNP Q5HCK7 EXPRESSION TAG SEQRES 1 A 215 SER ASN ALA MSE HIS ILE LEU VAL THR GLY PHE ALA PRO SEQRES 2 A 215 PHE ASP ASN GLN ASN ILE ASN PRO SER TRP GLU ALA VAL SEQRES 3 A 215 THR GLN LEU GLU ASP ILE ILE GLY THR HIS THR ILE ASP SEQRES 4 A 215 LYS LEU LYS LEU PRO THR SER PHE LYS LYS VAL ASP ASN SEQRES 5 A 215 ILE ILE ASN LYS THR LEU ALA SER ASN HIS TYR ASP VAL SEQRES 6 A 215 VAL LEU ALA ILE GLY GLN ALA GLY GLY ARG ASN ALA ILE SEQRES 7 A 215 THR PRO GLU ARG VAL ALA ILE ASN ILE ASP ASP ALA ARG SEQRES 8 A 215 ILE PRO ASP ASN ASP ASP PHE GLN PRO ILE ASP GLN ALA SEQRES 9 A 215 ILE HIS LEU ASP GLY ALA PRO ALA TYR PHE SER ASN LEU SEQRES 10 A 215 PRO VAL LYS ALA MSE THR GLN SER ILE ILE ASN GLN GLY SEQRES 11 A 215 LEU PRO GLY ALA LEU SER ASN SER ALA GLY THR PHE VAL SEQRES 12 A 215 CYS ASN HIS THR LEU TYR HIS LEU GLY TYR LEU GLN ASP SEQRES 13 A 215 LYS HIS TYR PRO HIS LEU ARG PHE GLY PHE ILE HIS VAL SEQRES 14 A 215 PRO TYR ILE PRO GLU GLN VAL ILE GLY LYS PRO ASP THR SEQRES 15 A 215 PRO SER MSE PRO LEU GLU LYS ILE VAL ALA GLY LEU THR SEQRES 16 A 215 ALA ALA ILE GLU ALA ILE SER ASN ASP GLU ASP LEU HIS SEQRES 17 A 215 LEU ALA LEU GLY THR THR GLU SEQRES 1 B 215 SER ASN ALA MSE HIS ILE LEU VAL THR GLY PHE ALA PRO SEQRES 2 B 215 PHE ASP ASN GLN ASN ILE ASN PRO SER TRP GLU ALA VAL SEQRES 3 B 215 THR GLN LEU GLU ASP ILE ILE GLY THR HIS THR ILE ASP SEQRES 4 B 215 LYS LEU LYS LEU PRO THR SER PHE LYS LYS VAL ASP ASN SEQRES 5 B 215 ILE ILE ASN LYS THR LEU ALA SER ASN HIS TYR ASP VAL SEQRES 6 B 215 VAL LEU ALA ILE GLY GLN ALA GLY GLY ARG ASN ALA ILE SEQRES 7 B 215 THR PRO GLU ARG VAL ALA ILE ASN ILE ASP ASP ALA ARG SEQRES 8 B 215 ILE PRO ASP ASN ASP ASP PHE GLN PRO ILE ASP GLN ALA SEQRES 9 B 215 ILE HIS LEU ASP GLY ALA PRO ALA TYR PHE SER ASN LEU SEQRES 10 B 215 PRO VAL LYS ALA MSE THR GLN SER ILE ILE ASN GLN GLY SEQRES 11 B 215 LEU PRO GLY ALA LEU SER ASN SER ALA GLY THR PHE VAL SEQRES 12 B 215 CYS ASN HIS THR LEU TYR HIS LEU GLY TYR LEU GLN ASP SEQRES 13 B 215 LYS HIS TYR PRO HIS LEU ARG PHE GLY PHE ILE HIS VAL SEQRES 14 B 215 PRO TYR ILE PRO GLU GLN VAL ILE GLY LYS PRO ASP THR SEQRES 15 B 215 PRO SER MSE PRO LEU GLU LYS ILE VAL ALA GLY LEU THR SEQRES 16 B 215 ALA ALA ILE GLU ALA ILE SER ASN ASP GLU ASP LEU HIS SEQRES 17 B 215 LEU ALA LEU GLY THR THR GLU MODRES 3GIU MSE A 1 MET SELENOMETHIONINE MODRES 3GIU MSE A 119 MET SELENOMETHIONINE MODRES 3GIU MSE A 182 MET SELENOMETHIONINE MODRES 3GIU MSE B 1 MET SELENOMETHIONINE MODRES 3GIU MSE B 119 MET SELENOMETHIONINE MODRES 3GIU MSE B 182 MET SELENOMETHIONINE HET MSE A 1 16 HET MSE A 119 16 HET MSE A 182 16 HET MSE B 1 13 HET MSE B 119 13 HET MSE B 182 8 HET ZN A 213 1 HET ACY A 214 4 HET PG4 A 215 13 HET PG4 A 216 19 HET GOL A 217 6 HET ZN B 213 1 HET ACY B 214 4 HET PEG B 215 7 HET PG4 B 216 13 HET GOL B 217 6 HETNAM MSE SELENOMETHIONINE HETNAM ZN ZINC ION HETNAM ACY ACETIC ACID HETNAM PG4 TETRAETHYLENE GLYCOL HETNAM GOL GLYCEROL HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 3 ZN 2(ZN 2+) FORMUL 4 ACY 2(C2 H4 O2) FORMUL 5 PG4 3(C8 H18 O5) FORMUL 7 GOL 2(C3 H8 O3) FORMUL 10 PEG C4 H10 O3 FORMUL 13 HOH *619(H2 O) HELIX 1 1 ASN A 17 LEU A 26 1 10 HELIX 2 2 SER A 43 ASN A 58 1 16 HELIX 3 3 PRO A 115 GLN A 126 1 12 HELIX 4 4 PHE A 139 HIS A 155 1 17 HELIX 5 5 ILE A 169 ILE A 174 5 6 HELIX 6 6 PRO A 183 ALA A 197 1 15 HELIX 7 7 ASN B 17 LEU B 26 1 10 HELIX 8 8 SER B 43 ASN B 58 1 16 HELIX 9 9 PRO B 115 GLN B 126 1 12 HELIX 10 10 PHE B 139 HIS B 155 1 17 HELIX 11 11 ILE B 169 VAL B 173 5 5 HELIX 12 12 PRO B 183 ALA B 197 1 15 SHEET 1 A 6 ILE A 29 ILE A 30 0 SHEET 2 A 6 HIS A 33 LEU A 40 -1 O HIS A 33 N ILE A 30 SHEET 3 A 6 HIS A 2 PHE A 8 1 N GLY A 7 O LEU A 40 SHEET 4 A 6 VAL A 62 GLN A 68 1 O LEU A 64 N LEU A 4 SHEET 5 A 6 ARG A 160 VAL A 166 1 O GLY A 162 N ALA A 65 SHEET 6 A 6 THR A 76 PRO A 77 -1 N THR A 76 O HIS A 165 SHEET 1 B 2 VAL A 80 ILE A 82 0 SHEET 2 B 2 ALA A 109 PHE A 111 -1 O TYR A 110 N ALA A 81 SHEET 1 C 2 ASP A 85 ASP A 86 0 SHEET 2 C 2 ILE A 98 GLN A 100 -1 O GLN A 100 N ASP A 85 SHEET 1 D 6 ILE B 29 ILE B 30 0 SHEET 2 D 6 HIS B 33 LEU B 40 -1 O HIS B 33 N ILE B 30 SHEET 3 D 6 MSE B 1 PHE B 8 1 N VAL B 5 O ASP B 36 SHEET 4 D 6 VAL B 62 GLN B 68 1 O LEU B 64 N LEU B 4 SHEET 5 D 6 ARG B 160 VAL B 166 1 O ILE B 164 N ALA B 65 SHEET 6 D 6 THR B 76 PRO B 77 -1 N THR B 76 O HIS B 165 SHEET 1 E 2 VAL B 80 ILE B 82 0 SHEET 2 E 2 ALA B 109 PHE B 111 -1 O TYR B 110 N ALA B 81 SHEET 1 F 2 ASP B 85 ASP B 86 0 SHEET 2 F 2 ILE B 98 GLN B 100 -1 O GLN B 100 N ASP B 85 LINK C AMSE A 1 N HIS A 2 1555 1555 1.33 LINK C BMSE A 1 N HIS A 2 1555 1555 1.33 LINK C ALA A 118 N AMSE A 119 1555 1555 1.33 LINK C ALA A 118 N BMSE A 119 1555 1555 1.32 LINK C AMSE A 119 N THR A 120 1555 1555 1.33 LINK C BMSE A 119 N THR A 120 1555 1555 1.33 LINK C SER A 181 N AMSE A 182 1555 1555 1.32 LINK C SER A 181 N BMSE A 182 1555 1555 1.33 LINK C AMSE A 182 N PRO A 183 1555 1555 1.35 LINK C BMSE A 182 N PRO A 183 1555 1555 1.35 LINK C ALA B 0 N MSE B 1 1555 1555 1.32 LINK C MSE B 1 N HIS B 2 1555 1555 1.33 LINK C ALA B 118 N MSE B 119 1555 1555 1.32 LINK C MSE B 119 N THR B 120 1555 1555 1.32 LINK C SER B 181 N MSE B 182 1555 1555 1.33 LINK C MSE B 182 N PRO B 183 1555 1555 1.33 LINK SG ACYS A 141 ZN A ZN A 213 1555 1555 1.90 LINK OE2AGLU A 212 ZN A ZN B 213 1555 1555 2.09 LINK SG ACYS B 141 ZN A ZN B 213 1555 1555 1.94 SITE 1 AC1 6 GLN A 68 CYS A 141 HIS A 165 ACY A 214 SITE 2 AC1 6 THR B 211 GLU B 212 SITE 1 AC2 8 PHE A 8 PHE A 11 ASN A 17 GLY A 67 SITE 2 AC2 8 GLN A 68 CYS A 141 ZN A 213 GLU B 212 SITE 1 AC3 6 ASN A 73 GLY A 127 LEU A 128 PRO A 129 SITE 2 AC3 6 GLY A 130 HOH A 424 SITE 1 AC4 11 ASN A 83 ASP A 99 GLN A 100 ALA A 101 SITE 2 AC4 11 LEU A 104 HOH A 310 HOH A 340 HOH A 369 SITE 3 AC4 11 HOH A 545 PHE B 111 HOH B 507 SITE 1 AC5 9 ASP A 94 GLN A 96 PRO A 115 ALA A 118 SITE 2 AC5 9 ALA A 197 SER A 199 LEU A 204 HOH A 546 SITE 3 AC5 9 HOH A 547 SITE 1 AC6 6 THR A 211 GLU A 212 GLN B 68 CYS B 141 SITE 2 AC6 6 HIS B 165 ACY B 214 SITE 1 AC7 8 GLU A 212 PHE B 8 PHE B 11 ASN B 17 SITE 2 AC7 8 GLY B 67 GLN B 68 CYS B 141 ZN B 213 SITE 1 AC8 12 SER B 112 ASN B 113 LEU B 114 PRO B 115 SITE 2 AC8 12 VAL B 116 ASP B 201 ASP B 203 HOH B 280 SITE 3 AC8 12 HOH B 284 HOH B 314 HOH B 480 HOH B 492 SITE 1 AC9 6 ASN B 73 GLY B 127 LEU B 128 PRO B 129 SITE 2 AC9 6 GLY B 130 HOH B 392 SITE 1 BC1 9 LEU B 55 ASN B 58 HIS B 59 TYR B 60 SITE 2 BC1 9 TYR B 156 HOH B 245 HOH B 409 HOH B 413 SITE 3 BC1 9 HOH B 591 CRYST1 42.790 81.000 119.910 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023370 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012346 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008340 0.00000 HETATM 1 N AMSE A 1 8.127 14.181 -33.839 0.60 12.53 N ANISOU 1 N AMSE A 1 1814 1331 1614 -24 461 -69 N HETATM 2 N BMSE A 1 7.932 14.449 -34.128 0.40 16.12 N ANISOU 2 N BMSE A 1 1925 2037 2161 31 301 -86 N HETATM 3 CA AMSE A 1 9.430 14.474 -33.187 0.60 11.66 C ANISOU 3 CA AMSE A 1 1723 1214 1493 125 337 -29 C HETATM 4 CA BMSE A 1 9.253 14.783 -33.510 0.40 15.91 C ANISOU 4 CA BMSE A 1 1958 1977 2109 86 198 -32 C HETATM 5 C AMSE A 1 10.545 14.003 -34.071 0.60 10.74 C ANISOU 5 C AMSE A 1 1545 1048 1486 101 296 -114 C HETATM 6 C BMSE A 1 10.400 14.189 -34.315 0.40 13.40 C ANISOU 6 C BMSE A 1 1706 1516 1869 98 161 -59 C HETATM 7 O AMSE A 1 10.517 12.878 -34.559 0.60 12.19 O ANISOU 7 O AMSE A 1 1861 1022 1748 47 249 -226 O HETATM 8 O BMSE A 1 10.233 13.181 -35.004 0.40 13.76 O ANISOU 8 O BMSE A 1 1689 1514 2023 174 123 -47 O HETATM 9 CB AMSE A 1 9.554 13.759 -31.841 0.60 12.53 C ANISOU 9 CB AMSE A 1 1831 1202 1728 51 423 97 C HETATM 10 CB BMSE A 1 9.328 14.303 -32.063 0.40 17.99 C ANISOU 10 CB BMSE A 1 2145 2349 2339 88 222 25 C HETATM 11 CG AMSE A 1 8.498 14.181 -30.862 0.60 13.06 C ANISOU 11 CG AMSE A 1 1912 1698 1352 60 369 394 C HETATM 12 CG BMSE A 1 9.183 12.813 -31.885 0.40 22.05 C ANISOU 12 CG BMSE A 1 2574 2895 2909 12 190 91 C HETATM 13 SE AMSE A 1 8.507 13.083 -29.271 0.60 19.05 SE ANISOU 13 SE AMSE A 1 3446 2022 1768 -210 308 1114 SE HETATM 14 SE BMSE A 1 9.462 12.322 -30.024 0.40 30.70 SE ANISOU 14 SE BMSE A 1 2494 5452 3715 174 291 775 SE HETATM 15 CE AMSE A 1 9.712 14.111 -28.126 0.60 19.37 C ANISOU 15 CE AMSE A 1 2140 2807 2412 -187 322 342 C HETATM 16 CE BMSE A 1 8.327 13.691 -29.199 0.40 29.43 C ANISOU 16 CE BMSE A 1 2728 4854 3598 107 -44 498 C