HEADER TRANSPORT PROTEIN 07-MAR-09 3GJ8 TITLE CRYSTAL STRUCTURE OF HUMAN RANGDP-NUP153ZNF34 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: GTP-BINDING NUCLEAR PROTEIN RAN; COMPND 3 CHAIN: A, C; COMPND 4 SYNONYM: GTPASE RAN, RAS-RELATED NUCLEAR PROTEIN, RAS-LIKE PROTEIN COMPND 5 TC4, ANDROGEN RECEPTOR-ASSOCIATED PROTEIN 24; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: NUCLEAR PORE COMPLEX PROTEIN NUP153; COMPND 10 CHAIN: B, D; COMPND 11 FRAGMENT: NUP153 - ZINC FINGER MODULE 34: UNP RESIDUES 790-876; COMPND 12 SYNONYM: NUCLEOPORIN NUP153, 153 KDA NUCLEOPORIN; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RAN, ARA24, OK/SW-CL.81; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: BL21(DE3)-RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 13 ORGANISM_COMMON: RAT; SOURCE 14 ORGANISM_TAXID: 10116; SOURCE 15 GENE: NUP153; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 18 EXPRESSION_SYSTEM_VARIANT: BL21(DE3)-RIL; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PGEX-6P1 KEYWDS G PROTEIN, GDP, RAN, NUP153, NUCLEAR PORE, ZINC FINGER, ACETYLATION, KEYWDS 2 CYTOPLASM, GTP-BINDING, HOST-VIRUS INTERACTION, ISOPEPTIDE BOND, KEYWDS 3 NUCLEOTIDE-BINDING, NUCLEUS, PHOSPHOPROTEIN, POLYMORPHISM, PROTEIN KEYWDS 4 TRANSPORT, TRANSPORT, UBL CONJUGATION, DNA-BINDING, METAL-BINDING, KEYWDS 5 MRNA TRANSPORT, NUCLEAR PORE COMPLEX, TRANSLOCATION, ZINC, ZINC- KEYWDS 6 FINGER, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.R.PARTRIDGE,T.U.SCHWARTZ REVDAT 3 06-SEP-23 3GJ8 1 REMARK REVDAT 2 20-OCT-21 3GJ8 1 REMARK SEQADV LINK REVDAT 1 04-AUG-09 3GJ8 0 JRNL AUTH J.R.PARTRIDGE,T.U.SCHWARTZ JRNL TITL CRYSTALLOGRAPHIC AND BIOCHEMICAL ANALYSIS OF THE RAN-BINDING JRNL TITL 2 ZINC FINGER DOMAIN. JRNL REF J.MOL.BIOL. V. 391 375 2009 JRNL REFN ISSN 0022-2836 JRNL PMID 19505478 JRNL DOI 10.1016/J.JMB.2009.06.011 REMARK 2 REMARK 2 RESOLUTION. 1.82 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.82 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.75 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 52792 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.203 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.090 REMARK 3 FREE R VALUE TEST SET COUNT : 2688 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.7601 - 4.8494 0.96 2657 138 0.1651 0.1795 REMARK 3 2 4.8494 - 3.8509 0.98 2620 143 0.1382 0.1599 REMARK 3 3 3.8509 - 3.3646 0.99 2665 129 0.1569 0.1553 REMARK 3 4 3.3646 - 3.0572 0.99 2673 141 0.1681 0.2369 REMARK 3 5 3.0572 - 2.8382 0.99 2607 156 0.1758 0.2135 REMARK 3 6 2.8382 - 2.6709 1.00 2688 121 0.1768 0.2305 REMARK 3 7 2.6709 - 2.5372 1.00 2605 168 0.1751 0.2186 REMARK 3 8 2.5372 - 2.4268 1.00 2670 149 0.1681 0.1901 REMARK 3 9 2.4268 - 2.3334 1.00 2648 136 0.1766 0.2291 REMARK 3 10 2.3334 - 2.2529 1.00 2626 143 0.1670 0.1913 REMARK 3 11 2.2529 - 2.1825 1.00 2614 153 0.1659 0.2360 REMARK 3 12 2.1825 - 2.1201 1.00 2651 136 0.1676 0.1860 REMARK 3 13 2.1201 - 2.0643 1.00 2646 137 0.1710 0.2134 REMARK 3 14 2.0643 - 2.0139 1.00 2662 130 0.1753 0.2061 REMARK 3 15 2.0139 - 1.9682 1.00 2646 129 0.1779 0.2499 REMARK 3 16 1.9682 - 1.9263 1.00 2641 149 0.1943 0.2365 REMARK 3 17 1.9263 - 1.8878 1.00 2639 141 0.2023 0.2090 REMARK 3 18 1.8878 - 1.8521 1.00 2617 150 0.2279 0.2554 REMARK 3 19 1.8521 - 1.8200 0.96 2529 139 0.2477 0.2695 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.34 REMARK 3 B_SOL : 58.19 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.490 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.430 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.31 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 3796 REMARK 3 ANGLE : 0.943 5157 REMARK 3 CHIRALITY : 0.062 572 REMARK 3 PLANARITY : 0.003 649 REMARK 3 DIHEDRAL : 14.714 1385 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN D REMARK 3 ORIGIN FOR THE GROUP (A): 52.4465 -4.3495 -3.9274 REMARK 3 T TENSOR REMARK 3 T11: 0.0934 T22: 0.0202 REMARK 3 T33: 0.0373 T12: 0.0084 REMARK 3 T13: -0.0553 T23: -0.0101 REMARK 3 L TENSOR REMARK 3 L11: 1.1836 L22: 0.3288 REMARK 3 L33: 0.5969 L12: -0.3351 REMARK 3 L13: 0.2717 L23: 0.1893 REMARK 3 S TENSOR REMARK 3 S11: -0.1049 S12: -0.1273 S13: 0.0880 REMARK 3 S21: 0.0268 S22: 0.0375 S23: -0.0363 REMARK 3 S31: -0.0393 S32: -0.0350 S33: 0.0576 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3GJ8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-MAR-09. REMARK 100 THE DEPOSITION ID IS D_1000051928. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-AUG-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52824 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.820 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06300 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 19.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.82 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.56000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.970 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRU 3GJ3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BIS-TRIS PH 6.5, 18-20% PEG 3350, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 30.85650 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -4 REMARK 465 PRO A -3 REMARK 465 HIS A -2 REMARK 465 MET A -1 REMARK 465 ALA A 0 REMARK 465 SER A 1 REMARK 465 ALA A 2 REMARK 465 ALA A 3 REMARK 465 GLN A 4 REMARK 465 GLY A 5 REMARK 465 PRO A 210 REMARK 465 ASP A 211 REMARK 465 GLU A 212 REMARK 465 ASP A 213 REMARK 465 ASP A 214 REMARK 465 ASP A 215 REMARK 465 LEU A 216 REMARK 465 GLY B 785 REMARK 465 PRO B 786 REMARK 465 LEU B 787 REMARK 465 GLY B 788 REMARK 465 SER B 789 REMARK 465 VAL B 790 REMARK 465 GLY B 791 REMARK 465 SER B 792 REMARK 465 TRP B 793 REMARK 465 GLU B 794 REMARK 465 CYS B 795 REMARK 465 PRO B 796 REMARK 465 VAL B 797 REMARK 465 CYS B 798 REMARK 465 CYS B 799 REMARK 465 VAL B 800 REMARK 465 SER B 801 REMARK 465 ASN B 802 REMARK 465 LYS B 803 REMARK 465 ALA B 804 REMARK 465 GLU B 805 REMARK 465 ASP B 806 REMARK 465 SER B 807 REMARK 465 ARG B 808 REMARK 465 CYS B 809 REMARK 465 VAL B 810 REMARK 465 SER B 811 REMARK 465 CYS B 812 REMARK 465 THR B 813 REMARK 465 SER B 814 REMARK 465 GLU B 815 REMARK 465 LYS B 816 REMARK 465 PRO B 817 REMARK 465 GLY B 818 REMARK 465 LEU B 819 REMARK 465 VAL B 820 REMARK 465 SER B 821 REMARK 465 ALA B 822 REMARK 465 SER B 823 REMARK 465 SER B 824 REMARK 465 SER B 825 REMARK 465 ASN B 826 REMARK 465 SER B 827 REMARK 465 VAL B 828 REMARK 465 PRO B 829 REMARK 465 VAL B 830 REMARK 465 SER B 831 REMARK 465 LEU B 832 REMARK 465 PRO B 833 REMARK 465 SER B 834 REMARK 465 GLY B 835 REMARK 465 GLY B 836 REMARK 465 CYS B 837 REMARK 465 LEU B 838 REMARK 465 GLY B 839 REMARK 465 LEU B 840 REMARK 465 ASP B 841 REMARK 465 LYS B 842 REMARK 465 PHE B 843 REMARK 465 LYS B 844 REMARK 465 LYS B 845 REMARK 465 PRO B 846 REMARK 465 GLU B 847 REMARK 465 GLY B 875 REMARK 465 THR B 876 REMARK 465 GLY C -4 REMARK 465 PRO C -3 REMARK 465 HIS C -2 REMARK 465 MET C -1 REMARK 465 ALA C 0 REMARK 465 SER C 1 REMARK 465 ALA C 2 REMARK 465 ALA C 3 REMARK 465 GLN C 4 REMARK 465 GLY C 5 REMARK 465 PRO C 210 REMARK 465 ASP C 211 REMARK 465 GLU C 212 REMARK 465 ASP C 213 REMARK 465 ASP C 214 REMARK 465 ASP C 215 REMARK 465 LEU C 216 REMARK 465 GLY D 785 REMARK 465 PRO D 786 REMARK 465 LEU D 787 REMARK 465 GLY D 788 REMARK 465 SER D 789 REMARK 465 VAL D 790 REMARK 465 GLY D 791 REMARK 465 SER D 792 REMARK 465 TRP D 793 REMARK 465 GLU D 794 REMARK 465 CYS D 795 REMARK 465 PRO D 796 REMARK 465 VAL D 797 REMARK 465 CYS D 798 REMARK 465 CYS D 799 REMARK 465 VAL D 800 REMARK 465 SER D 801 REMARK 465 ASN D 802 REMARK 465 LYS D 803 REMARK 465 ALA D 804 REMARK 465 GLU D 805 REMARK 465 ASP D 806 REMARK 465 SER D 807 REMARK 465 ARG D 808 REMARK 465 CYS D 809 REMARK 465 VAL D 810 REMARK 465 SER D 811 REMARK 465 CYS D 812 REMARK 465 THR D 813 REMARK 465 SER D 814 REMARK 465 GLU D 815 REMARK 465 LYS D 816 REMARK 465 PRO D 817 REMARK 465 GLY D 818 REMARK 465 LEU D 819 REMARK 465 VAL D 820 REMARK 465 SER D 821 REMARK 465 ALA D 822 REMARK 465 SER D 823 REMARK 465 SER D 824 REMARK 465 SER D 825 REMARK 465 ASN D 826 REMARK 465 SER D 827 REMARK 465 VAL D 828 REMARK 465 PRO D 829 REMARK 465 VAL D 830 REMARK 465 SER D 831 REMARK 465 LEU D 832 REMARK 465 PRO D 833 REMARK 465 SER D 834 REMARK 465 GLY D 835 REMARK 465 GLY D 836 REMARK 465 CYS D 837 REMARK 465 LEU D 838 REMARK 465 GLY D 839 REMARK 465 LEU D 840 REMARK 465 ASP D 841 REMARK 465 LYS D 842 REMARK 465 PHE D 843 REMARK 465 LYS D 844 REMARK 465 LYS D 845 REMARK 465 PRO D 846 REMARK 465 GLU D 847 REMARK 465 GLY D 848 REMARK 465 GLY D 875 REMARK 465 THR D 876 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 113 -138.73 66.74 REMARK 500 ASN A 114 59.93 -92.17 REMARK 500 LYS A 123 33.68 75.62 REMARK 500 ASN A 143 4.71 83.95 REMARK 500 ALA B 868 -61.89 -90.09 REMARK 500 GLU C 113 -141.95 68.48 REMARK 500 LYS C 123 30.88 76.22 REMARK 500 ASN C 143 12.26 82.14 REMARK 500 ALA D 868 -64.02 -91.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 24 OG1 REMARK 620 2 GDP A 302 O1B 91.6 REMARK 620 3 HOH A 479 O 91.5 86.4 REMARK 620 4 HOH A 480 O 84.9 174.4 89.4 REMARK 620 5 HOH A 481 O 87.3 97.0 176.5 87.2 REMARK 620 6 HOH A 482 O 174.3 93.9 90.6 89.8 90.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 300 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 852 SG REMARK 620 2 CYS B 855 SG 115.4 REMARK 620 3 CYS B 866 SG 108.8 104.2 REMARK 620 4 CYS B 869 SG 99.9 116.4 112.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR C 24 OG1 REMARK 620 2 GDP C 302 O1B 91.4 REMARK 620 3 HOH C 475 O 86.5 95.6 REMARK 620 4 HOH C 476 O 176.8 90.6 90.8 REMARK 620 5 HOH C 477 O 85.2 174.3 88.8 93.0 REMARK 620 6 HOH C 478 O 93.2 83.7 179.2 89.6 91.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 300 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 852 SG REMARK 620 2 CYS D 855 SG 114.4 REMARK 620 3 CYS D 866 SG 107.7 103.7 REMARK 620 4 CYS D 869 SG 100.0 118.5 112.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG C 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG C 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP C 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN D 300 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3CH5 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE RANGDP-NUP153ZNF2 COMPLEX REMARK 900 RELATED ID: 2GQE RELATED DB: PDB REMARK 900 MOLECULAR CHARACTERIZATION OF THE RAN BINDING ZINC FINGER DOMAIN REMARK 900 RELATED ID: 1BYU RELATED DB: PDB REMARK 900 CANINE GDP-RAN REMARK 900 RELATED ID: 3GJ0 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN NUCLEOPORIN REMARK 900 RELATED ID: 3GJ3 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN NUCLEOPORIN IN COMPLEX WITH NUP153 - REMARK 900 ZINC FINGER MODULE 2 REMARK 900 RELATED ID: 3GJ4 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN NUCLEOPORIN IN COMPLEX WITH NUP153 - REMARK 900 ZINC FINGER MODULE 3 REMARK 900 RELATED ID: 3GJ5 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN NUCLEOPORIN F35S MUTANT IN COMPLEX WITH REMARK 900 NUP153 - ZINC FINGER MODULE 4 REMARK 900 RELATED ID: 3GJ6 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN NUCLEOPORIN F35S MUTANT IN COMPLEX WITH REMARK 900 NUP153 - ZINC FINGER MODULE 1 REMARK 900 RELATED ID: 3GJ7 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN NUCLEOPORIN F35S MUTANT IN COMPLEX WITH REMARK 900 NUP153 - ZINC FINGER MODULE 12 DBREF 3GJ8 A 2 216 UNP P62826 RAN_HUMAN 2 216 DBREF 3GJ8 B 790 876 UNP P49791 NU153_RAT 790 876 DBREF 3GJ8 C 2 216 UNP P62826 RAN_HUMAN 2 216 DBREF 3GJ8 D 790 876 UNP P49791 NU153_RAT 790 876 SEQADV 3GJ8 GLY A -4 UNP P62826 EXPRESSION TAG SEQADV 3GJ8 PRO A -3 UNP P62826 EXPRESSION TAG SEQADV 3GJ8 HIS A -2 UNP P62826 EXPRESSION TAG SEQADV 3GJ8 MET A -1 UNP P62826 EXPRESSION TAG SEQADV 3GJ8 ALA A 0 UNP P62826 EXPRESSION TAG SEQADV 3GJ8 SER A 1 UNP P62826 EXPRESSION TAG SEQADV 3GJ8 SER A 35 UNP P62826 PHE 35 ENGINEERED MUTATION SEQADV 3GJ8 GLY B 785 UNP P49791 EXPRESSION TAG SEQADV 3GJ8 PRO B 786 UNP P49791 EXPRESSION TAG SEQADV 3GJ8 LEU B 787 UNP P49791 EXPRESSION TAG SEQADV 3GJ8 GLY B 788 UNP P49791 EXPRESSION TAG SEQADV 3GJ8 SER B 789 UNP P49791 EXPRESSION TAG SEQADV 3GJ8 GLY C -4 UNP P62826 EXPRESSION TAG SEQADV 3GJ8 PRO C -3 UNP P62826 EXPRESSION TAG SEQADV 3GJ8 HIS C -2 UNP P62826 EXPRESSION TAG SEQADV 3GJ8 MET C -1 UNP P62826 EXPRESSION TAG SEQADV 3GJ8 ALA C 0 UNP P62826 EXPRESSION TAG SEQADV 3GJ8 SER C 1 UNP P62826 EXPRESSION TAG SEQADV 3GJ8 SER C 35 UNP P62826 PHE 35 ENGINEERED MUTATION SEQADV 3GJ8 GLY D 785 UNP P49791 EXPRESSION TAG SEQADV 3GJ8 PRO D 786 UNP P49791 EXPRESSION TAG SEQADV 3GJ8 LEU D 787 UNP P49791 EXPRESSION TAG SEQADV 3GJ8 GLY D 788 UNP P49791 EXPRESSION TAG SEQADV 3GJ8 SER D 789 UNP P49791 EXPRESSION TAG SEQRES 1 A 221 GLY PRO HIS MET ALA SER ALA ALA GLN GLY GLU PRO GLN SEQRES 2 A 221 VAL GLN PHE LYS LEU VAL LEU VAL GLY ASP GLY GLY THR SEQRES 3 A 221 GLY LYS THR THR PHE VAL LYS ARG HIS LEU THR GLY GLU SEQRES 4 A 221 SER GLU LYS LYS TYR VAL ALA THR LEU GLY VAL GLU VAL SEQRES 5 A 221 HIS PRO LEU VAL PHE HIS THR ASN ARG GLY PRO ILE LYS SEQRES 6 A 221 PHE ASN VAL TRP ASP THR ALA GLY GLN GLU LYS PHE GLY SEQRES 7 A 221 GLY LEU ARG ASP GLY TYR TYR ILE GLN ALA GLN CYS ALA SEQRES 8 A 221 ILE ILE MET PHE ASP VAL THR SER ARG VAL THR TYR LYS SEQRES 9 A 221 ASN VAL PRO ASN TRP HIS ARG ASP LEU VAL ARG VAL CYS SEQRES 10 A 221 GLU ASN ILE PRO ILE VAL LEU CYS GLY ASN LYS VAL ASP SEQRES 11 A 221 ILE LYS ASP ARG LYS VAL LYS ALA LYS SER ILE VAL PHE SEQRES 12 A 221 HIS ARG LYS LYS ASN LEU GLN TYR TYR ASP ILE SER ALA SEQRES 13 A 221 LYS SER ASN TYR ASN PHE GLU LYS PRO PHE LEU TRP LEU SEQRES 14 A 221 ALA ARG LYS LEU ILE GLY ASP PRO ASN LEU GLU PHE VAL SEQRES 15 A 221 ALA MET PRO ALA LEU ALA PRO PRO GLU VAL VAL MET ASP SEQRES 16 A 221 PRO ALA LEU ALA ALA GLN TYR GLU HIS ASP LEU GLU VAL SEQRES 17 A 221 ALA GLN THR THR ALA LEU PRO ASP GLU ASP ASP ASP LEU SEQRES 1 B 92 GLY PRO LEU GLY SER VAL GLY SER TRP GLU CYS PRO VAL SEQRES 2 B 92 CYS CYS VAL SER ASN LYS ALA GLU ASP SER ARG CYS VAL SEQRES 3 B 92 SER CYS THR SER GLU LYS PRO GLY LEU VAL SER ALA SER SEQRES 4 B 92 SER SER ASN SER VAL PRO VAL SER LEU PRO SER GLY GLY SEQRES 5 B 92 CYS LEU GLY LEU ASP LYS PHE LYS LYS PRO GLU GLY SER SEQRES 6 B 92 TRP ASP CYS GLU VAL CYS LEU VAL GLN ASN LYS ALA ASP SEQRES 7 B 92 SER THR LYS CYS ILE ALA CYS GLU SER ALA LYS PRO GLY SEQRES 8 B 92 THR SEQRES 1 C 221 GLY PRO HIS MET ALA SER ALA ALA GLN GLY GLU PRO GLN SEQRES 2 C 221 VAL GLN PHE LYS LEU VAL LEU VAL GLY ASP GLY GLY THR SEQRES 3 C 221 GLY LYS THR THR PHE VAL LYS ARG HIS LEU THR GLY GLU SEQRES 4 C 221 SER GLU LYS LYS TYR VAL ALA THR LEU GLY VAL GLU VAL SEQRES 5 C 221 HIS PRO LEU VAL PHE HIS THR ASN ARG GLY PRO ILE LYS SEQRES 6 C 221 PHE ASN VAL TRP ASP THR ALA GLY GLN GLU LYS PHE GLY SEQRES 7 C 221 GLY LEU ARG ASP GLY TYR TYR ILE GLN ALA GLN CYS ALA SEQRES 8 C 221 ILE ILE MET PHE ASP VAL THR SER ARG VAL THR TYR LYS SEQRES 9 C 221 ASN VAL PRO ASN TRP HIS ARG ASP LEU VAL ARG VAL CYS SEQRES 10 C 221 GLU ASN ILE PRO ILE VAL LEU CYS GLY ASN LYS VAL ASP SEQRES 11 C 221 ILE LYS ASP ARG LYS VAL LYS ALA LYS SER ILE VAL PHE SEQRES 12 C 221 HIS ARG LYS LYS ASN LEU GLN TYR TYR ASP ILE SER ALA SEQRES 13 C 221 LYS SER ASN TYR ASN PHE GLU LYS PRO PHE LEU TRP LEU SEQRES 14 C 221 ALA ARG LYS LEU ILE GLY ASP PRO ASN LEU GLU PHE VAL SEQRES 15 C 221 ALA MET PRO ALA LEU ALA PRO PRO GLU VAL VAL MET ASP SEQRES 16 C 221 PRO ALA LEU ALA ALA GLN TYR GLU HIS ASP LEU GLU VAL SEQRES 17 C 221 ALA GLN THR THR ALA LEU PRO ASP GLU ASP ASP ASP LEU SEQRES 1 D 92 GLY PRO LEU GLY SER VAL GLY SER TRP GLU CYS PRO VAL SEQRES 2 D 92 CYS CYS VAL SER ASN LYS ALA GLU ASP SER ARG CYS VAL SEQRES 3 D 92 SER CYS THR SER GLU LYS PRO GLY LEU VAL SER ALA SER SEQRES 4 D 92 SER SER ASN SER VAL PRO VAL SER LEU PRO SER GLY GLY SEQRES 5 D 92 CYS LEU GLY LEU ASP LYS PHE LYS LYS PRO GLU GLY SER SEQRES 6 D 92 TRP ASP CYS GLU VAL CYS LEU VAL GLN ASN LYS ALA ASP SEQRES 7 D 92 SER THR LYS CYS ILE ALA CYS GLU SER ALA LYS PRO GLY SEQRES 8 D 92 THR HET MG A 301 1 HET GDP A 302 28 HET MG A 303 1 HET ZN B 300 1 HET MG C 303 1 HET MG C 301 1 HET GDP C 302 28 HET ZN D 300 1 HETNAM MG MAGNESIUM ION HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM ZN ZINC ION FORMUL 5 MG 4(MG 2+) FORMUL 6 GDP 2(C10 H15 N5 O11 P2) FORMUL 8 ZN 2(ZN 2+) FORMUL 13 HOH *548(H2 O) HELIX 1 1 GLY A 22 LYS A 28 1 7 HELIX 2 2 HIS A 30 GLU A 36 1 7 HELIX 3 3 GLY A 68 PHE A 72 5 5 HELIX 4 4 ARG A 76 ILE A 81 1 6 HELIX 5 5 SER A 94 ASN A 100 1 7 HELIX 6 6 ASN A 100 GLU A 113 1 14 HELIX 7 7 LYS A 132 ILE A 136 5 5 HELIX 8 8 GLU A 158 GLY A 170 1 13 HELIX 9 9 ASP A 190 THR A 207 1 18 HELIX 10 10 GLY C 22 LYS C 28 1 7 HELIX 11 11 HIS C 30 GLU C 36 1 7 HELIX 12 12 GLY C 68 GLY C 73 5 6 HELIX 13 13 ARG C 76 ILE C 81 1 6 HELIX 14 14 SER C 94 ASN C 100 1 7 HELIX 15 15 ASN C 100 GLU C 113 1 14 HELIX 16 16 LYS C 132 ILE C 136 5 5 HELIX 17 17 VAL C 137 ASN C 143 1 7 HELIX 18 18 GLU C 158 GLY C 170 1 13 HELIX 19 19 ASP C 190 THR C 207 1 18 SHEET 1 A 7 LYS A 38 VAL A 40 0 SHEET 2 A 7 VAL A 45 THR A 54 -1 O VAL A 45 N VAL A 40 SHEET 3 A 7 GLY A 57 THR A 66 -1 O PHE A 61 N LEU A 50 SHEET 4 A 7 GLN A 10 VAL A 16 1 N PHE A 11 O ASN A 62 SHEET 5 A 7 CYS A 85 ASP A 91 1 O MET A 89 N VAL A 16 SHEET 6 A 7 ILE A 117 ASN A 122 1 O ASN A 122 N PHE A 90 SHEET 7 A 7 GLN A 145 ASP A 148 1 O GLN A 145 N LEU A 119 SHEET 1 B 2 TRP B 850 ASP B 851 0 SHEET 2 B 2 GLN B 858 ASN B 859 -1 O ASN B 859 N TRP B 850 SHEET 1 C 7 LYS C 38 VAL C 40 0 SHEET 2 C 7 VAL C 45 THR C 54 -1 O VAL C 45 N VAL C 40 SHEET 3 C 7 GLY C 57 THR C 66 -1 O PHE C 61 N LEU C 50 SHEET 4 C 7 GLN C 10 VAL C 16 1 N PHE C 11 O ASN C 62 SHEET 5 C 7 CYS C 85 ASP C 91 1 O MET C 89 N VAL C 16 SHEET 6 C 7 ILE C 117 ASN C 122 1 O ASN C 122 N PHE C 90 SHEET 7 C 7 GLN C 145 ASP C 148 1 O GLN C 145 N LEU C 119 SHEET 1 D 2 TRP D 850 ASP D 851 0 SHEET 2 D 2 GLN D 858 ASN D 859 -1 O ASN D 859 N TRP D 850 LINK OG1 THR A 24 MG MG A 301 1555 1555 2.16 LINK MG MG A 301 O1B GDP A 302 1555 1555 2.13 LINK MG MG A 301 O HOH A 479 1555 1555 2.21 LINK MG MG A 301 O HOH A 480 1555 1555 2.29 LINK MG MG A 301 O HOH A 481 1555 1555 2.29 LINK MG MG A 301 O HOH A 482 1555 1555 2.24 LINK ZN ZN B 300 SG CYS B 852 1555 1555 2.46 LINK ZN ZN B 300 SG CYS B 855 1555 1555 2.29 LINK ZN ZN B 300 SG CYS B 866 1555 1555 2.36 LINK ZN ZN B 300 SG CYS B 869 1555 1555 2.40 LINK OG1 THR C 24 MG MG C 301 1555 1555 2.17 LINK MG MG C 301 O1B GDP C 302 1555 1555 2.17 LINK MG MG C 301 O HOH C 475 1555 1555 2.25 LINK MG MG C 301 O HOH C 476 1555 1555 2.25 LINK MG MG C 301 O HOH C 477 1555 1555 2.30 LINK MG MG C 301 O HOH C 478 1555 1555 2.27 LINK ZN ZN D 300 SG CYS D 852 1555 1555 2.43 LINK ZN ZN D 300 SG CYS D 855 1555 1555 2.25 LINK ZN ZN D 300 SG CYS D 866 1555 1555 2.38 LINK ZN ZN D 300 SG CYS D 869 1555 1555 2.41 SITE 1 AC1 6 THR A 24 GDP A 302 HOH A 479 HOH A 480 SITE 2 AC1 6 HOH A 481 HOH A 482 SITE 1 AC2 23 GLY A 20 THR A 21 GLY A 22 LYS A 23 SITE 2 AC2 23 THR A 24 THR A 25 ASN A 122 LYS A 123 SITE 3 AC2 23 ASP A 125 ILE A 126 SER A 150 ALA A 151 SITE 4 AC2 23 LYS A 152 HOH A 240 HOH A 254 HOH A 279 SITE 5 AC2 23 MG A 301 HOH A 336 HOH A 350 HOH A 404 SITE 6 AC2 23 HOH A 417 HOH A 479 HOH A 482 SITE 1 AC3 4 PRO A 180 ALA A 181 HOH A 322 MG C 303 SITE 1 AC4 4 CYS B 852 CYS B 855 CYS B 866 CYS B 869 SITE 1 AC5 5 MG A 303 PRO C 180 ALA C 181 HOH C 243 SITE 2 AC5 5 HOH C 341 SITE 1 AC6 6 THR C 24 GDP C 302 HOH C 475 HOH C 476 SITE 2 AC6 6 HOH C 477 HOH C 478 SITE 1 AC7 24 GLY C 20 THR C 21 GLY C 22 LYS C 23 SITE 2 AC7 24 THR C 24 THR C 25 ASN C 122 LYS C 123 SITE 3 AC7 24 ASP C 125 ILE C 126 SER C 150 ALA C 151 SITE 4 AC7 24 LYS C 152 HOH C 219 HOH C 249 HOH C 274 SITE 5 AC7 24 MG C 301 HOH C 310 HOH C 373 HOH C 476 SITE 6 AC7 24 HOH C 478 HOH C 499 HOH C 540 HOH C 541 SITE 1 AC8 4 CYS D 852 CYS D 855 CYS D 866 CYS D 869 CRYST1 74.257 61.713 70.635 90.00 112.31 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013467 0.000000 0.005526 0.00000 SCALE2 0.000000 0.016204 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015303 0.00000