HEADER METAL BINDING PROTEIN 09-MAR-09 3GK4
TITLE X-RAY STRUCTURE OF BOVINE SBI523,CA(2+)-S100B
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: PROTEIN S100-B;
COMPND 3 CHAIN: X;
COMPND 4 SYNONYM: S100 CALCIUM-BINDING PROTEIN B, S-100 PROTEIN SUBUNIT BETA,
COMPND 5 S-100 PROTEIN BETA CHAIN;
COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS;
SOURCE 3 ORGANISM_COMMON: BOVINE,COW,DOMESTIC CATTLE,DOMESTIC COW;
SOURCE 4 ORGANISM_TAXID: 9913;
SOURCE 5 GENE: S100B;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562;
SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3);
SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET11B
KEYWDS EF HAND, ALPHA HELICAL, METAL-BINDING, NUCLEUS, METAL BINDING PROTEIN
EXPDTA X-RAY DIFFRACTION
AUTHOR T.H.CHARPENTIER,D.J.WEBER,E.A.TOTH
REVDAT 5 06-SEP-23 3GK4 1 REMARK
REVDAT 4 01-NOV-17 3GK4 1 REMARK
REVDAT 3 13-JUL-11 3GK4 1 VERSN
REVDAT 2 09-JUN-10 3GK4 1 JRNL
REVDAT 1 09-JUN-09 3GK4 0
JRNL AUTH T.H.CHARPENTIER,P.T.WILDER,M.A.LIRIANO,K.M.VARNEY,S.ZHONG,
JRNL AUTH 2 A.COOP,E.POZHARSKI,A.D.MACKERELL,E.A.TOTH,D.J.WEBER
JRNL TITL SMALL MOLECULES BOUND TO UNIQUE SITES IN THE TARGET PROTEIN
JRNL TITL 2 BINDING CLEFT OF CALCIUM-BOUND S100B AS CHARACTERIZED BY
JRNL TITL 3 NUCLEAR MAGNETIC RESONANCE AND X-RAY CRYSTALLOGRAPHY.
JRNL REF BIOCHEMISTRY V. 48 6202 2009
JRNL REFN ISSN 0006-2960
JRNL PMID 19469484
JRNL DOI 10.1021/BI9005754
REMARK 2
REMARK 2 RESOLUTION. 1.90 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : REFMAC
REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER,
REMARK 3 : NICHOLLS,WINN,LONG,VAGIN
REMARK 3
REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.77
REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000
REMARK 3 COMPLETENESS FOR RANGE (%) : 93.6
REMARK 3 NUMBER OF REFLECTIONS : 7045
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.210
REMARK 3 R VALUE (WORKING SET) : 0.209
REMARK 3 FREE R VALUE : 0.228
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.600
REMARK 3 FREE R VALUE TEST SET COUNT : 326
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 20
REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90
REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95
REMARK 3 REFLECTION IN BIN (WORKING SET) : 317
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 60.85
REMARK 3 BIN R VALUE (WORKING SET) : 0.2260
REMARK 3 BIN FREE R VALUE SET COUNT : 11
REMARK 3 BIN FREE R VALUE : 0.3430
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 727
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 30
REMARK 3 SOLVENT ATOMS : 40
REMARK 3
REMARK 3 B VALUES.
REMARK 3 B VALUE TYPE : LIKELY RESIDUAL
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.21
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : 1.44000
REMARK 3 B22 (A**2) : -1.83000
REMARK 3 B33 (A**2) : 0.39000
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : 0.00000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED OVERALL COORDINATE ERROR.
REMARK 3 ESU BASED ON R VALUE (A): 0.196
REMARK 3 ESU BASED ON FREE R VALUE (A): 0.155
REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.126
REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.279
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.947
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT
REMARK 3 BOND LENGTHS REFINED ATOMS (A): 768 ; 0.015 ; 0.022
REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL
REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1029 ; 1.620 ; 1.997
REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL
REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 89 ; 5.069 ; 5.000
REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 40 ;35.999 ;26.500
REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 145 ;15.601 ;15.000
REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 1 ;17.574 ;15.000
REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 109 ; 0.133 ; 0.200
REMARK 3 GENERAL PLANES REFINED ATOMS (A): 577 ; 0.006 ; 0.020
REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 382 ; 0.233 ; 0.200
REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 534 ; 0.304 ; 0.200
REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 31 ; 0.229 ; 0.200
REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 9 ; 0.138 ; 0.200
REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 63 ; 0.239 ; 0.200
REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 12 ; 0.199 ; 0.200
REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 459 ; 0.763 ; 1.500
REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 714 ; 1.144 ; 2.000
REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 376 ; 1.979 ; 3.000
REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 315 ; 3.173 ; 4.500
REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 NCS RESTRAINTS STATISTICS
REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 6
REMARK 3
REMARK 3 TLS GROUP : 1
REMARK 3 NUMBER OF COMPONENTS GROUP : 1
REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI
REMARK 3 RESIDUE RANGE : X 1 X 5
REMARK 3 ORIGIN FOR THE GROUP (A): 3.2547 5.5600 -2.4199
REMARK 3 T TENSOR
REMARK 3 T11: -0.1775 T22: -0.0695
REMARK 3 T33: -0.0257 T12: 0.0426
REMARK 3 T13: 0.0391 T23: 0.0247
REMARK 3 L TENSOR
REMARK 3 L11: 24.7486 L22: 33.6801
REMARK 3 L33: 9.3223 L12: -3.2790
REMARK 3 L13: -3.1047 L23: 10.3868
REMARK 3 S TENSOR
REMARK 3 S11: 0.0441 S12: -1.2657 S13: 0.3560
REMARK 3 S21: 0.0236 S22: 0.3986 S23: -2.0300
REMARK 3 S31: -0.2365 S32: 0.7587 S33: -0.4426
REMARK 3
REMARK 3 TLS GROUP : 2
REMARK 3 NUMBER OF COMPONENTS GROUP : 1
REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI
REMARK 3 RESIDUE RANGE : X 6 X 16
REMARK 3 ORIGIN FOR THE GROUP (A): -1.7155 -5.6025 -6.7581
REMARK 3 T TENSOR
REMARK 3 T11: 0.0466 T22: -0.1262
REMARK 3 T33: -0.2168 T12: 0.0773
REMARK 3 T13: 0.0143 T23: 0.0077
REMARK 3 L TENSOR
REMARK 3 L11: 5.1265 L22: 57.2179
REMARK 3 L33: 0.2547 L12: 11.0537
REMARK 3 L13: -0.1935 L23: 2.4563
REMARK 3 S TENSOR
REMARK 3 S11: -0.2051 S12: 0.2758 S13: -0.1533
REMARK 3 S21: -1.2383 S22: 0.1920 S23: -0.5973
REMARK 3 S31: 0.1282 S32: 0.2594 S33: 0.0130
REMARK 3
REMARK 3 TLS GROUP : 3
REMARK 3 NUMBER OF COMPONENTS GROUP : 1
REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI
REMARK 3 RESIDUE RANGE : X 17 X 40
REMARK 3 ORIGIN FOR THE GROUP (A): -5.4413 -16.4793 -4.8671
REMARK 3 T TENSOR
REMARK 3 T11: -0.0522 T22: -0.1795
REMARK 3 T33: -0.1630 T12: 0.0061
REMARK 3 T13: -0.0165 T23: -0.0270
REMARK 3 L TENSOR
REMARK 3 L11: 7.0384 L22: 6.6914
REMARK 3 L33: 6.6023 L12: -0.3689
REMARK 3 L13: 0.6257 L23: -0.0646
REMARK 3 S TENSOR
REMARK 3 S11: -0.0681 S12: 0.4856 S13: -0.4584
REMARK 3 S21: -0.7102 S22: 0.0539 S23: 0.0234
REMARK 3 S31: 0.5881 S32: -0.0075 S33: 0.0142
REMARK 3
REMARK 3 TLS GROUP : 4
REMARK 3 NUMBER OF COMPONENTS GROUP : 1
REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI
REMARK 3 RESIDUE RANGE : X 41 X 63
REMARK 3 ORIGIN FOR THE GROUP (A): -10.4705 -17.1980 5.4103
REMARK 3 T TENSOR
REMARK 3 T11: -0.0682 T22: -0.1558
REMARK 3 T33: -0.1316 T12: -0.0165
REMARK 3 T13: 0.0367 T23: -0.0282
REMARK 3 L TENSOR
REMARK 3 L11: 8.4448 L22: 6.8593
REMARK 3 L33: 4.8117 L12: 2.1859
REMARK 3 L13: 2.1908 L23: -0.7480
REMARK 3 S TENSOR
REMARK 3 S11: 0.2063 S12: -0.3437 S13: -0.0340
REMARK 3 S21: 0.4743 S22: -0.1976 S23: 0.5282
REMARK 3 S31: 0.4613 S32: -0.1837 S33: -0.0087
REMARK 3
REMARK 3 TLS GROUP : 5
REMARK 3 NUMBER OF COMPONENTS GROUP : 1
REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI
REMARK 3 RESIDUE RANGE : X 64 X 78
REMARK 3 ORIGIN FOR THE GROUP (A): -12.6237 -8.6122 -3.4917
REMARK 3 T TENSOR
REMARK 3 T11: -0.1516 T22: -0.1712
REMARK 3 T33: -0.0406 T12: 0.0174
REMARK 3 T13: -0.0720 T23: 0.0258
REMARK 3 L TENSOR
REMARK 3 L11: 5.3273 L22: 15.6196
REMARK 3 L33: 12.5952 L12: 5.4898
REMARK 3 L13: 2.4452 L23: 8.0371
REMARK 3 S TENSOR
REMARK 3 S11: -0.0562 S12: 0.4020 S13: 0.1435
REMARK 3 S21: -0.8102 S22: 0.3182 S23: 0.4363
REMARK 3 S31: -0.2044 S32: -0.2012 S33: -0.2620
REMARK 3
REMARK 3 TLS GROUP : 6
REMARK 3 NUMBER OF COMPONENTS GROUP : 1
REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI
REMARK 3 RESIDUE RANGE : X 79 X 88
REMARK 3 ORIGIN FOR THE GROUP (A): -7.1810 -1.6476 12.2504
REMARK 3 T TENSOR
REMARK 3 T11: -0.0022 T22: -0.0568
REMARK 3 T33: 0.0105 T12: 0.0324
REMARK 3 T13: 0.0334 T23: 0.0213
REMARK 3 L TENSOR
REMARK 3 L11: 8.2611 L22: 8.8860
REMARK 3 L33: 37.6814 L12: -5.1498
REMARK 3 L13: 8.8647 L23: 6.7376
REMARK 3 S TENSOR
REMARK 3 S11: -0.2095 S12: -0.8099 S13: 0.2660
REMARK 3 S21: 1.0238 S22: 0.4621 S23: -0.1791
REMARK 3 S31: -0.2251 S32: 0.5464 S33: -0.2526
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : MASK
REMARK 3 PARAMETERS FOR MASK CALCULATION
REMARK 3 VDW PROBE RADIUS : 1.20
REMARK 3 ION PROBE RADIUS : 0.80
REMARK 3 SHRINKAGE RADIUS : 0.80
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING
REMARK 3 POSITIONS
REMARK 4
REMARK 4 3GK4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-MAR-09.
REMARK 100 THE DEPOSITION ID IS D_1000051960.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 03-APR-08
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 6.0
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : SSRL
REMARK 200 BEAMLINE : BL9-1
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.98
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : CCD
REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000
REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 7056
REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900
REMARK 200 RESOLUTION RANGE LOW (A) : 50.000
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 93.6
REMARK 200 DATA REDUNDANCY : 6.300
REMARK 200 R MERGE (I) : 0.03700
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 44.1760
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97
REMARK 200 COMPLETENESS FOR SHELL (%) : 64.8
REMARK 200 DATA REDUNDANCY IN SHELL : 3.60
REMARK 200 R MERGE FOR SHELL (I) : 0.27300
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: MOLREP
REMARK 200 STARTING MODEL: PDB ENTRY 1MHO
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 42.48
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 35% PEGMME550, 7.5MM CACL2, 100MM BIS
REMARK 280 -TRIS BUFFER, 2.5% GLYCEROL, PH 6.0, VAPOR DIFFUSION, SITTING
REMARK 280 DROP, TEMPERATURE 295K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,-Y,Z+1/2
REMARK 290 3555 -X,Y,-Z+1/2
REMARK 290 4555 X,-Y,-Z
REMARK 290 5555 X+1/2,Y+1/2,Z
REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2
REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2
REMARK 290 8555 X+1/2,-Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 29.61700
REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 29.61700
REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 17.22950
REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 44.76600
REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 17.22950
REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 44.76600
REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 29.61700
REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 17.22950
REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 44.76600
REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 29.61700
REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 17.22950
REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 44.76600
REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: X
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 HIS X 90
REMARK 465 GLU X 91
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 O SER X 41 O HOH X 132 2.08
REMARK 500
REMARK 500 REMARK: NULL
REMARK 620
REMARK 620 METAL COORDINATION
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 CA X 92 CA
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 SER X 18 O
REMARK 620 2 GLU X 21 O 102.9
REMARK 620 3 ASP X 23 O 85.4 84.6
REMARK 620 4 LYS X 26 O 88.6 157.5 77.0
REMARK 620 5 GLU X 31 OE1 97.2 118.3 155.3 78.5
REMARK 620 6 GLU X 31 OE2 78.9 77.1 152.5 124.5 50.6
REMARK 620 7 HOH X 117 O 167.4 81.8 83.4 83.3 90.7 113.7
REMARK 620 N 1 2 3 4 5 6
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 CA X 93 CA
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 ASP X 61 OD1
REMARK 620 2 ASP X 63 OD1 88.6
REMARK 620 3 ASP X 65 OD1 84.8 77.0
REMARK 620 4 GLU X 67 O 81.4 158.1 82.8
REMARK 620 5 GLU X 72 OE1 115.1 122.9 150.2 78.9
REMARK 620 6 GLU X 72 OE2 90.7 80.6 157.2 118.7 50.2
REMARK 620 7 HOH X 113 O 166.5 85.7 82.0 99.6 78.2 100.4
REMARK 620 N 1 2 3 4 5 6
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA X 92
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA X 93
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 53A X 94
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 1MHO RELATED DB: PDB
REMARK 900 THE 2.0 A STRUCTURE OF HOLO S100B FROM BOVINE BRAIN
REMARK 900 RELATED ID: 3CR2 RELATED DB: PDB
REMARK 900 X-RAY STRUCTURE OF BOVINE ZN(2+),CA(2+)-S100B
REMARK 900 RELATED ID: 3CR4 RELATED DB: PDB
REMARK 900 X-RAY STRUCTURE OF BOVINE PNT,CA(2+)-S100B
REMARK 900 RELATED ID: 3CR5 RELATED DB: PDB
REMARK 900 X-RAY STRUCTURE OF BOVINE PNT-ZN(2+),CA(2+)-S100B
REMARK 900 RELATED ID: 1DT7 RELATED DB: PDB
REMARK 900 SOLUTION STRUCTURE OF THE C-TERMINAL NEGATIVE REGULATORY DOMAIN OF
REMARK 900 P53 IN A COMPLEX WITH CA2+-BOUND S100B(BB)
REMARK 900 RELATED ID: 3GK1 RELATED DB: PDB
REMARK 900 RELATED ID: 3GK2 RELATED DB: PDB
DBREF 3GK4 X 0 91 UNP P02638 S100B_BOVIN 1 92
SEQRES 1 X 92 MET SER GLU LEU GLU LYS ALA VAL VAL ALA LEU ILE ASP
SEQRES 2 X 92 VAL PHE HIS GLN TYR SER GLY ARG GLU GLY ASP LYS HIS
SEQRES 3 X 92 LYS LEU LYS LYS SER GLU LEU LYS GLU LEU ILE ASN ASN
SEQRES 4 X 92 GLU LEU SER HIS PHE LEU GLU GLU ILE LYS GLU GLN GLU
SEQRES 5 X 92 VAL VAL ASP LYS VAL MET GLU THR LEU ASP SER ASP GLY
SEQRES 6 X 92 ASP GLY GLU CYS ASP PHE GLN GLU PHE MET ALA PHE VAL
SEQRES 7 X 92 ALA MET ILE THR THR ALA CYS HIS GLU PHE PHE GLU HIS
SEQRES 8 X 92 GLU
HET CA X 92 1
HET CA X 93 1
HET 53A X 94 28
HETNAM CA CALCIUM ION
HETNAM 53A ETHYL 5-{[(1R)-1-(ETHOXYCARBONYL)-2-
HETNAM 2 53A OXOPROPYL]SULFANYL}-1,2-DIHYDRO[1,2,3]TRIAZOLO[1,5-
HETNAM 3 53A A]QUINAZOLINE-3-CARBOXYLATE
FORMUL 2 CA 2(CA 2+)
FORMUL 4 53A C18 H20 N4 O5 S
FORMUL 5 HOH *40(H2 O)
HELIX 1 1 SER X 1 GLY X 19 1 19
HELIX 2 2 LYS X 28 LEU X 40 1 13
HELIX 3 3 GLU X 49 ASP X 61 1 13
HELIX 4 4 ASP X 69 GLU X 89 1 21
LINK O SER X 18 CA CA X 92 1555 1555 2.32
LINK O GLU X 21 CA CA X 92 1555 1555 2.35
LINK O ASP X 23 CA CA X 92 1555 1555 2.32
LINK O LYS X 26 CA CA X 92 1555 1555 2.46
LINK OE1 GLU X 31 CA CA X 92 1555 1555 2.43
LINK OE2 GLU X 31 CA CA X 92 1555 1555 2.61
LINK OD1 ASP X 61 CA CA X 93 1555 1555 2.20
LINK OD1 ASP X 63 CA CA X 93 1555 1555 2.39
LINK OD1 ASP X 65 CA CA X 93 1555 1555 2.27
LINK O GLU X 67 CA CA X 93 1555 1555 2.41
LINK OE1 GLU X 72 CA CA X 93 1555 1555 2.45
LINK OE2 GLU X 72 CA CA X 93 1555 1555 2.68
LINK CA CA X 92 O HOH X 117 1555 1555 2.42
LINK CA CA X 93 O HOH X 113 1555 1555 2.15
SITE 1 AC1 6 SER X 18 GLU X 21 ASP X 23 LYS X 26
SITE 2 AC1 6 GLU X 31 HOH X 117
SITE 1 AC2 6 ASP X 61 ASP X 63 ASP X 65 GLU X 67
SITE 2 AC2 6 GLU X 72 HOH X 113
SITE 1 AC3 7 SER X 41 HIS X 42 PHE X 43 LEU X 44
SITE 2 AC3 7 GLU X 45 HOH X 132 HOH X 133
CRYST1 34.459 89.532 59.234 90.00 90.00 90.00 C 2 2 21 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.029020 0.000000 0.000000 0.00000
SCALE2 0.000000 0.011169 0.000000 0.00000
SCALE3 0.000000 0.000000 0.016882 0.00000