HEADER IMMUNE SYSTEM, ANTITUMOR PROTEIN 11-MAR-09 3GKW TITLE CRYSTAL STRUCTURE OF THE FAB FRAGMENT OF NIMOTUZUMAB. AN ANTI- TITLE 2 EPIDERMAL GROWTH FACTOR RECEPTOR ANTIBODY COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEAVY CHAIN OF THE ANTIBODY NIMOTUZUMAB; COMPND 3 CHAIN: H; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: LIGHT CHAIN OF THE ANTIBODY NIMOTUZUMAB; COMPND 7 CHAIN: L; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 CELL_LINE: B CELL; SOURCE 6 GENE: IMMONOGLOBULIN; SOURCE 7 EXPRESSION_SYSTEM: MUS MUSCULUS; SOURCE 8 EXPRESSION_SYSTEM_COMMON: MOUSE; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 10090; SOURCE 10 EXPRESSION_SYSTEM_CELL_LINE: NSO; SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PCDNA3; SOURCE 13 MOL_ID: 2; SOURCE 14 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 15 ORGANISM_COMMON: HUMAN; SOURCE 16 ORGANISM_TAXID: 9606; SOURCE 17 CELL_LINE: B CELL; SOURCE 18 GENE: IMMONOGLOBULIN; SOURCE 19 EXPRESSION_SYSTEM: MUS MUSCULUS; SOURCE 20 EXPRESSION_SYSTEM_COMMON: MOUSE; SOURCE 21 EXPRESSION_SYSTEM_TAXID: 10090; SOURCE 22 EXPRESSION_SYSTEM_CELL_LINE: NSO; SOURCE 23 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 24 EXPRESSION_SYSTEM_PLASMID: PCDNA3 KEYWDS IMMUNOGLOBULIN FOLD, DISPLACED STRICTLY CONSERVED TRP 103 FOLLOWING KEYWDS 2 KABAT NUMBERING, IMMUNE SYSTEM, ANTITUMOR PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.TALAVERA,R.FRIEMANN,C.MARTINEZ-FLEITES,E.MORENO,U.KRENGEL REVDAT 4 01-NOV-23 3GKW 1 REMARK REVDAT 3 16-MAY-18 3GKW 1 REMARK REVDAT 2 13-JUL-11 3GKW 1 VERSN REVDAT 1 04-AUG-09 3GKW 0 JRNL AUTH A.TALAVERA,R.FRIEMANN,S.GOMEZ-PUERTA,C.MARTINEZ-FLEITES, JRNL AUTH 2 G.GARRIDO,A.RABASA,A.LOPEZ-REQUENA,A.PUPO,R.F.JOHANSEN, JRNL AUTH 3 O.SANCHEZ,U.KRENGEL,E.MORENO JRNL TITL NIMOTUZUMAB, AN ANTITUMOR ANTIBODY THAT TARGETS THE JRNL TITL 2 EPIDERMAL GROWTH FACTOR RECEPTOR, BLOCKS LIGAND BINDING JRNL TITL 3 WHILE PERMITTING THE ACTIVE RECEPTOR CONFORMATION JRNL REF CANCER RES. V. 69 5851 2009 JRNL REFN ISSN 0008-5472 JRNL PMID 19584289 JRNL DOI 10.1158/0008-5472.CAN-08-4518 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0066 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.79 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 16678 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.284 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 889 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.56 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1184 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.42 REMARK 3 BIN R VALUE (WORKING SET) : 0.2660 REMARK 3 BIN FREE R VALUE SET COUNT : 64 REMARK 3 BIN FREE R VALUE : 0.3360 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3078 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 23 REMARK 3 SOLVENT ATOMS : 183 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.33000 REMARK 3 B22 (A**2) : -0.33000 REMARK 3 B33 (A**2) : 0.65000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.527 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.322 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.226 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 21.529 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.911 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.830 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3179 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4318 ; 1.701 ; 1.945 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 395 ; 6.978 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 129 ;36.558 ;24.341 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 489 ;18.698 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;21.640 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 479 ; 0.105 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2393 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1992 ; 0.704 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3233 ; 1.370 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1187 ; 2.167 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1085 ; 3.343 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 7 H 120 REMARK 3 ORIGIN FOR THE GROUP (A): 16.0511 -12.5110 -23.1042 REMARK 3 T TENSOR REMARK 3 T11: 0.0322 T22: 0.0543 REMARK 3 T33: 0.0034 T12: 0.0112 REMARK 3 T13: -0.0018 T23: -0.0011 REMARK 3 L TENSOR REMARK 3 L11: 1.1341 L22: 1.5775 REMARK 3 L33: 0.7586 L12: 0.6574 REMARK 3 L13: -0.2260 L23: 0.1524 REMARK 3 S TENSOR REMARK 3 S11: -0.0539 S12: -0.0246 S13: -0.0066 REMARK 3 S21: 0.0171 S22: 0.0115 S23: -0.0041 REMARK 3 S31: 0.0225 S32: 0.0823 S33: 0.0425 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 121 H 212 REMARK 3 ORIGIN FOR THE GROUP (A): -12.2273 -10.0545 -25.0086 REMARK 3 T TENSOR REMARK 3 T11: 0.1042 T22: 0.1198 REMARK 3 T33: 0.3105 T12: 0.0566 REMARK 3 T13: -0.1403 T23: -0.1724 REMARK 3 L TENSOR REMARK 3 L11: 2.2249 L22: 2.0540 REMARK 3 L33: 1.0022 L12: -0.2009 REMARK 3 L13: -0.3437 L23: 1.1495 REMARK 3 S TENSOR REMARK 3 S11: -0.0619 S12: 0.0756 S13: 0.0545 REMARK 3 S21: -0.3968 S22: -0.4192 S23: 0.7747 REMARK 3 S31: -0.1249 S32: -0.3356 S33: 0.4811 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 1 L 120 REMARK 3 ORIGIN FOR THE GROUP (A): 11.2194 5.3072 -11.0043 REMARK 3 T TENSOR REMARK 3 T11: 0.0486 T22: 0.0287 REMARK 3 T33: 0.0189 T12: 0.0119 REMARK 3 T13: -0.0016 T23: -0.0159 REMARK 3 L TENSOR REMARK 3 L11: 1.7869 L22: 0.8478 REMARK 3 L33: 0.5269 L12: -0.1093 REMARK 3 L13: -0.4735 L23: 0.3271 REMARK 3 S TENSOR REMARK 3 S11: 0.0392 S12: 0.1017 S13: -0.0693 REMARK 3 S21: -0.0194 S22: -0.0512 S23: 0.1001 REMARK 3 S31: -0.0337 S32: 0.0150 S33: 0.0120 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 121 L 207 REMARK 3 ORIGIN FOR THE GROUP (A): -18.8267 -7.2468 -10.8242 REMARK 3 T TENSOR REMARK 3 T11: 0.0648 T22: 0.1915 REMARK 3 T33: 0.3562 T12: -0.0425 REMARK 3 T13: 0.0983 T23: -0.2351 REMARK 3 L TENSOR REMARK 3 L11: 0.3825 L22: 4.5756 REMARK 3 L33: 0.9694 L12: 0.9584 REMARK 3 L13: 0.4979 L23: 0.9981 REMARK 3 S TENSOR REMARK 3 S11: -0.0229 S12: -0.0003 S13: 0.0919 REMARK 3 S21: 0.1059 S22: -0.3122 S23: 0.6223 REMARK 3 S31: 0.0680 S32: -0.1304 S33: 0.3351 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3GKW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-MAR-09. REMARK 100 THE DEPOSITION ID IS D_1000051988. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-NOV-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.75 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MAX II REMARK 200 BEAMLINE : I711 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97 REMARK 200 MONOCHROMATOR : CUT SINGLE SI(111) CRYSTAL REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17486 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.12500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.56 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.80 REMARK 200 R MERGE FOR SHELL (I) : 0.48900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1UYW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES, 25% PEG 1000, PH 6.75, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 69.26750 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 42.11150 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 42.11150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 103.90125 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 42.11150 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 42.11150 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 34.63375 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 42.11150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 42.11150 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 103.90125 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 42.11150 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 42.11150 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 34.63375 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 69.26750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4200 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18090 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH L 244 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN H 1 REMARK 465 VAL H 2 REMARK 465 GLN H 3 REMARK 465 LEU H 4 REMARK 465 GLN H 5 REMARK 465 SER H 127 REMARK 465 SER H 128 REMARK 465 LYS H 129 REMARK 465 SER H 130 REMARK 465 THR H 131 REMARK 465 SER H 132 REMARK 465 GLY H 133 REMARK 465 GLY H 134 REMARK 465 THR H 135 REMARK 465 SER H 186 REMARK 465 SER H 187 REMARK 465 SER H 188 REMARK 465 LEU H 189 REMARK 465 GLY H 190 REMARK 465 THR H 191 REMARK 465 LYS L 149 REMARK 465 VAL L 150 REMARK 465 ASP L 151 REMARK 465 ASN L 152 REMARK 465 ALA L 153 REMARK 465 LEU L 154 REMARK 465 GLU L 187 REMARK 465 LYS L 188 REMARK 465 HIS L 189 REMARK 465 LYS L 190 REMARK 465 VAL L 191 REMARK 465 TYR L 192 REMARK 465 ALA L 193 REMARK 465 SER L 208 REMARK 465 PHE L 209 REMARK 465 ASN L 210 REMARK 465 ARG L 211 REMARK 465 GLY L 212 REMARK 465 GLU L 213 REMARK 465 CYS L 214 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU L 165 O HOH L 240 2.10 REMARK 500 OD2 ASP H 72 OG SER H 75 2.15 REMARK 500 N THR L 69 O HOH L 287 2.18 REMARK 500 O SER L 121 CD2 LEU L 125 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS H 196 CB CYS H 196 SG -0.115 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP L 185 CB - CA - C ANGL. DEV. = -14.5 DEGREES REMARK 500 ASP L 185 N - CA - C ANGL. DEV. = 28.4 DEGREES REMARK 500 TYR L 186 N - CA - CB ANGL. DEV. = -20.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN H 43 -158.14 -95.77 REMARK 500 THR H 76 62.03 36.02 REMARK 500 THR H 87 108.93 -49.84 REMARK 500 ASP H 144 44.03 81.07 REMARK 500 THR H 160 -50.70 -156.94 REMARK 500 VAL L 51 -58.55 81.78 REMARK 500 ALA L 84 176.24 179.78 REMARK 500 ASN L 138 68.79 34.43 REMARK 500 SER L 156 137.82 -173.23 REMARK 500 ASN L 158 30.60 -140.48 REMARK 500 SER L 171 19.45 59.21 REMARK 500 ALA L 184 153.52 168.44 REMARK 500 ASP L 185 -56.56 73.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG H 5072 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1PE L 5072 DBREF 3GKW H 1 212 PDB 3GKW 3GKW 1 212 DBREF 3GKW L 1 214 PDB 3GKW 3GKW 1 214 SEQRES 1 H 222 GLN VAL GLN LEU GLN GLN SER GLY ALA GLU VAL LYS LYS SEQRES 2 H 222 PRO GLY SER SER VAL LYS VAL SER CYS LYS ALA SER GLY SEQRES 3 H 222 TYR THR PHE THR ASN TYR TYR ILE TYR TRP VAL ARG GLN SEQRES 4 H 222 ALA PRO GLY GLN GLY LEU GLU TRP ILE GLY GLY ILE ASN SEQRES 5 H 222 PRO THR SER GLY GLY SER ASN PHE ASN GLU LYS PHE LYS SEQRES 6 H 222 THR ARG VAL THR ILE THR ALA ASP GLU SER SER THR THR SEQRES 7 H 222 ALA TYR MET GLU LEU SER SER LEU ARG SER GLU ASP THR SEQRES 8 H 222 ALA PHE TYR PHE CYS THR ARG GLN GLY LEU TRP PHE ASP SEQRES 9 H 222 SER ASP GLY ARG GLY PHE ASP PHE TRP GLY GLN GLY THR SEQRES 10 H 222 THR VAL THR VAL SER SER ALA SER THR LYS GLY PRO SER SEQRES 11 H 222 VAL PHE PRO LEU ALA PRO SER SER LYS SER THR SER GLY SEQRES 12 H 222 GLY THR ALA ALA LEU GLY CYS LEU VAL LYS ASP TYR PHE SEQRES 13 H 222 PRO GLU PRO VAL THR VAL SER TRP ASN SER GLY ALA LEU SEQRES 14 H 222 THR SER GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SER SEQRES 15 H 222 SER GLY LEU TYR SER LEU SER SER VAL VAL THR VAL PRO SEQRES 16 H 222 SER SER SER LEU GLY THR GLN THR TYR ILE CYS ASN VAL SEQRES 17 H 222 ASN HIS LYS PRO SER ASN THR LYS VAL ASP LYS LYS VAL SEQRES 18 H 222 PRO SEQRES 1 L 219 ASP ILE GLN MET THR GLN SER PRO SER SER LEU SER ALA SEQRES 2 L 219 SER VAL GLY ASP ARG VAL THR ILE THR CYS ARG SER SER SEQRES 3 L 219 GLN ASN ILE VAL HIS SER ASN GLY ASN THR TYR LEU ASP SEQRES 4 L 219 TRP TYR GLN GLN THR PRO GLY LYS ALA PRO LYS LEU LEU SEQRES 5 L 219 ILE TYR LYS VAL SER ASN ARG PHE SER GLY VAL PRO SER SEQRES 6 L 219 ARG PHE SER GLY SER GLY SER GLY THR ASP PHE THR PHE SEQRES 7 L 219 THR ILE SER SER LEU GLN PRO GLU ASP ILE ALA THR TYR SEQRES 8 L 219 TYR CYS PHE GLN TYR SER HIS VAL PRO TRP THR PHE GLY SEQRES 9 L 219 GLN GLY THR LYS LEU GLN ILE THR ARG GLU VAL ALA ALA SEQRES 10 L 219 PRO SER VAL PHE ILE PHE PRO PRO SER ASP GLU GLN LEU SEQRES 11 L 219 LYS SER GLY THR ALA SER VAL VAL CYS LEU LEU ASN ASN SEQRES 12 L 219 PHE TYR PRO ARG GLU ALA LYS VAL GLN TRP LYS VAL ASP SEQRES 13 L 219 ASN ALA LEU GLN SER GLY ASN SER GLN GLU SER VAL THR SEQRES 14 L 219 GLU GLN ASP SER LYS ASP SER THR TYR SER LEU SER SER SEQRES 15 L 219 THR LEU THR LEU SER LYS ALA ASP TYR GLU LYS HIS LYS SEQRES 16 L 219 VAL TYR ALA CYS GLU VAL THR HIS GLN GLY LEU SER SER SEQRES 17 L 219 PRO VAL THR LYS SER PHE ASN ARG GLY GLU CYS HET PEG H5072 7 HET 1PE L5072 16 HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM 1PE PENTAETHYLENE GLYCOL HETSYN 1PE PEG400 FORMUL 3 PEG C4 H10 O3 FORMUL 4 1PE C10 H22 O6 FORMUL 5 HOH *183(H2 O) HELIX 1 1 SER H 25 ASN H 31 1 7 HELIX 2 2 GLU H 61 LYS H 64 5 4 HELIX 3 3 ARG H 83 THR H 87 5 5 HELIX 4 4 PHE H 102 GLN H 105 5 4 HELIX 5 5 SER H 156 ALA H 158 5 3 HELIX 6 6 LYS H 201 ASN H 204 5 4 HELIX 7 7 GLN L 79 ILE L 83 5 5 HELIX 8 8 SER L 121 LYS L 126 1 6 SHEET 1 A 6 GLY H 8 LYS H 12 0 SHEET 2 A 6 THR H 107 VAL H 111 1 O THR H 110 N LYS H 12 SHEET 3 A 6 ALA H 88 GLY H 96 -1 N ALA H 88 O VAL H 109 SHEET 4 A 6 TYR H 32 GLN H 39 -1 N TYR H 33 O GLN H 95 SHEET 5 A 6 LEU H 45 ILE H 51 -1 O GLY H 49 N TRP H 36 SHEET 6 A 6 SER H 57 PHE H 59 -1 O ASN H 58 N GLY H 50 SHEET 1 B 3 VAL H 18 LYS H 23 0 SHEET 2 B 3 THR H 77 LEU H 82 -1 O LEU H 82 N VAL H 18 SHEET 3 B 3 VAL H 67 ASP H 72 -1 N ASP H 72 O THR H 77 SHEET 1 C 4 SER H 120 LEU H 124 0 SHEET 2 C 4 ALA H 137 TYR H 145 -1 O LEU H 141 N PHE H 122 SHEET 3 C 4 TYR H 176 THR H 183 -1 O LEU H 178 N VAL H 142 SHEET 4 C 4 VAL H 163 THR H 165 -1 N HIS H 164 O VAL H 181 SHEET 1 D 4 SER H 120 LEU H 124 0 SHEET 2 D 4 ALA H 137 TYR H 145 -1 O LEU H 141 N PHE H 122 SHEET 3 D 4 TYR H 176 THR H 183 -1 O LEU H 178 N VAL H 142 SHEET 4 D 4 VAL H 169 LEU H 170 -1 N VAL H 169 O SER H 177 SHEET 1 E 3 THR H 151 TRP H 154 0 SHEET 2 E 3 TYR H 194 HIS H 200 -1 O ASN H 197 N SER H 153 SHEET 3 E 3 THR H 205 VAL H 211 -1 O LYS H 209 N CYS H 196 SHEET 1 F 4 MET L 4 SER L 7 0 SHEET 2 F 4 VAL L 19 SER L 25 -1 O THR L 22 N SER L 7 SHEET 3 F 4 ASP L 70 ILE L 75 -1 O PHE L 73 N ILE L 21 SHEET 4 F 4 PHE L 62 SER L 67 -1 N SER L 65 O THR L 72 SHEET 1 G 6 SER L 10 SER L 14 0 SHEET 2 G 6 THR L 102 THR L 107 1 O GLN L 105 N LEU L 11 SHEET 3 G 6 THR L 85 GLN L 90 -1 N TYR L 86 O THR L 102 SHEET 4 G 6 LEU L 33 GLN L 38 -1 N TYR L 36 O TYR L 87 SHEET 5 G 6 LYS L 45 TYR L 49 -1 O ILE L 48 N TRP L 35 SHEET 6 G 6 ASN L 53 ARG L 54 -1 O ASN L 53 N TYR L 49 SHEET 1 H 4 SER L 10 SER L 14 0 SHEET 2 H 4 THR L 102 THR L 107 1 O GLN L 105 N LEU L 11 SHEET 3 H 4 THR L 85 GLN L 90 -1 N TYR L 86 O THR L 102 SHEET 4 H 4 THR L 97 PHE L 98 -1 O THR L 97 N GLN L 90 SHEET 1 I 4 SER L 114 PHE L 118 0 SHEET 2 I 4 THR L 129 PHE L 139 -1 O LEU L 135 N PHE L 116 SHEET 3 I 4 TYR L 173 SER L 182 -1 O LEU L 181 N ALA L 130 SHEET 4 I 4 SER L 159 VAL L 163 -1 N GLN L 160 O THR L 178 SHEET 1 J 3 LYS L 145 GLN L 147 0 SHEET 2 J 3 GLU L 195 THR L 197 -1 O THR L 197 N LYS L 145 SHEET 3 J 3 VAL L 205 THR L 206 -1 O VAL L 205 N VAL L 196 SSBOND 1 CYS H 22 CYS H 92 1555 1555 2.04 SSBOND 2 CYS H 140 CYS H 196 1555 1555 2.02 SSBOND 3 CYS L 23 CYS L 88 1555 1555 2.08 SSBOND 4 CYS L 134 CYS L 194 1555 1555 2.06 CISPEP 1 PHE H 146 PRO H 147 0 -3.60 CISPEP 2 GLU H 148 PRO H 149 0 -4.70 CISPEP 3 SER L 7 PRO L 8 0 -5.16 CISPEP 4 PRO L 40 GLY L 41 0 -28.94 CISPEP 5 VAL L 94 PRO L 95 0 -0.14 CISPEP 6 TYR L 140 PRO L 141 0 -4.79 CISPEP 7 LYS L 183 ALA L 184 0 5.03 CISPEP 8 ALA L 184 ASP L 185 0 -0.15 SITE 1 AC1 8 GLN H 39 ALA H 40 PRO H 41 THR H 87 SITE 2 AC1 8 ALA H 88 PHE H 89 THR H 108 HOH H 285 SITE 1 AC2 8 ASN H 58 GLY H 96 HIS L 27D TYR L 32 SITE 2 AC2 8 TYR L 91 TRP L 96 HOH L 216 HOH L 217 CRYST1 84.223 84.223 138.535 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011873 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011873 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007218 0.00000