data_3GLP # _entry.id 3GLP # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.389 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3GLP pdb_00003glp 10.2210/pdb3glp/pdb NDB AR0103 ? ? RCSB RCSB052017 ? ? WWPDB D_1000052017 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-05-26 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-11-01 4 'Structure model' 1 3 2019-12-11 5 'Structure model' 1 4 2024-02-21 6 'Structure model' 1 5 2024-04-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Non-polymer description' 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Refinement description' 4 4 'Structure model' Advisory 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Derived calculations' 7 5 'Structure model' 'Data collection' 8 5 'Structure model' 'Database references' 9 5 'Structure model' 'Derived calculations' 10 6 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' diffrn_source 3 4 'Structure model' ndb_struct_conf_na 4 4 'Structure model' ndb_struct_na_base_pair 5 4 'Structure model' ndb_struct_na_base_pair_step 6 4 'Structure model' pdbx_distant_solvent_atoms 7 4 'Structure model' pdbx_struct_assembly 8 4 'Structure model' pdbx_struct_assembly_gen 9 4 'Structure model' pdbx_struct_assembly_prop 10 4 'Structure model' struct_conn 11 5 'Structure model' chem_comp_atom 12 5 'Structure model' chem_comp_bond 13 5 'Structure model' database_2 14 5 'Structure model' struct_site 15 6 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.name' 2 4 'Structure model' '_diffrn_source.pdbx_synchrotron_site' 3 4 'Structure model' '_ndb_struct_na_base_pair.propeller' 4 4 'Structure model' '_ndb_struct_na_base_pair_step.helical_twist' 5 4 'Structure model' '_ndb_struct_na_base_pair_step.tilt' 6 4 'Structure model' '_pdbx_struct_assembly.oligomeric_count' 7 4 'Structure model' '_pdbx_struct_assembly.oligomeric_details' 8 4 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list' 9 4 'Structure model' '_pdbx_struct_assembly_prop.value' 10 5 'Structure model' '_database_2.pdbx_DOI' 11 5 'Structure model' '_database_2.pdbx_database_accession' 12 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 13 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 14 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.entry_id 3GLP _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2009-03-12 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 3GM7 _pdbx_database_related.details '1.58 A resolution X-ray structure of (CUG)6' _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kiliszek, A.' 1 'Kierzek, R.' 2 'Krzyzosiak, W.J.' 3 'Rypniewski, W.' 4 # _citation.id primary _citation.title ;Structural insights into CUG repeats containing the 'stretched U-U wobble': implications for myotonic dystrophy. ; _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_volume 37 _citation.page_first 4149 _citation.page_last 4156 _citation.year 2009 _citation.journal_id_ASTM NARHAD _citation.country UK _citation.journal_id_ISSN 0305-1048 _citation.journal_id_CSD 0389 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 19433512 _citation.pdbx_database_id_DOI 10.1093/nar/gkp350 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kiliszek, A.' 1 ? primary 'Kierzek, R.' 2 ? primary 'Krzyzosiak, W.J.' 3 ? primary 'Rypniewski, W.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-R(*GP*CP*UP*GP*CP*UP*GP*C)-3'" 2518.537 5 ? ? ? '(GCUGCUGC)2 RNA duplex' 2 non-polymer syn 'SULFATE ION' 96.063 2 ? ? ? ? 3 non-polymer syn GLYCEROL 92.094 1 ? ? ? ? 4 water nat water 18.015 194 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GCUGCUGC _entity_poly.pdbx_seq_one_letter_code_can GCUGCUGC _entity_poly.pdbx_strand_id A,B,C,D,E _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 GLYCEROL GOL 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 C n 1 3 U n 1 4 G n 1 5 C n 1 6 U n 1 7 G n 1 8 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'Synthetic mRNA with the sequence of the part of human mRNA' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HOH non-polymer . WATER ? 'H2 O' 18.015 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 C 2 2 2 C C A . n A 1 3 U 3 3 3 U U A . n A 1 4 G 4 4 4 G G A . n A 1 5 C 5 5 5 C C A . n A 1 6 U 6 6 6 U U A . n A 1 7 G 7 7 7 G G A . n A 1 8 C 8 8 8 C C A . n B 1 1 G 1 1 1 G G B . n B 1 2 C 2 2 2 C C B . n B 1 3 U 3 3 3 U U B . n B 1 4 G 4 4 4 G G B . n B 1 5 C 5 5 5 C C B . n B 1 6 U 6 6 6 U U B . n B 1 7 G 7 7 7 G G B . n B 1 8 C 8 8 8 C C B . n C 1 1 G 1 1 1 G G C . n C 1 2 C 2 2 2 C C C . n C 1 3 U 3 3 3 U U C . n C 1 4 G 4 4 4 G G C . n C 1 5 C 5 5 5 C C C . n C 1 6 U 6 6 6 U U C . n C 1 7 G 7 7 7 G G C . n C 1 8 C 8 8 8 C C C . n D 1 1 G 1 1 1 G G D . n D 1 2 C 2 2 2 C C D . n D 1 3 U 3 3 3 U U D . n D 1 4 G 4 4 4 G G D . n D 1 5 C 5 5 5 C C D . n D 1 6 U 6 6 6 U U D . n D 1 7 G 7 7 7 G G D . n D 1 8 C 8 8 8 C C D . n E 1 1 G 1 1 1 G G E . n E 1 2 C 2 2 2 C C E . n E 1 3 U 3 3 3 U U E . n E 1 4 G 4 4 4 G G E . n E 1 5 C 5 5 5 C C E . n E 1 6 U 6 6 6 U U E . n E 1 7 G 7 7 7 G G E . n E 1 8 C 8 8 8 C C E . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 SO4 1 9 2 SO4 SO4 A . G 3 GOL 1 10 1 GOL GOL A . H 2 SO4 1 9 1 SO4 SO4 D . I 4 HOH 1 89 89 HOH HOH A . I 4 HOH 2 90 90 HOH HOH A . I 4 HOH 3 95 95 HOH HOH A . I 4 HOH 4 96 96 HOH HOH A . I 4 HOH 5 97 97 HOH HOH A . I 4 HOH 6 98 98 HOH HOH A . I 4 HOH 7 99 99 HOH HOH A . I 4 HOH 8 100 100 HOH HOH A . I 4 HOH 9 101 101 HOH HOH A . I 4 HOH 10 103 103 HOH HOH A . I 4 HOH 11 108 108 HOH HOH A . I 4 HOH 12 110 110 HOH HOH A . I 4 HOH 13 111 111 HOH HOH A . I 4 HOH 14 112 112 HOH HOH A . I 4 HOH 15 114 114 HOH HOH A . I 4 HOH 16 116 116 HOH HOH A . I 4 HOH 17 117 117 HOH HOH A . I 4 HOH 18 119 119 HOH HOH A . I 4 HOH 19 120 120 HOH HOH A . I 4 HOH 20 124 124 HOH HOH A . I 4 HOH 21 125 125 HOH HOH A . I 4 HOH 22 126 126 HOH HOH A . I 4 HOH 23 127 127 HOH HOH A . I 4 HOH 24 128 128 HOH HOH A . I 4 HOH 25 129 129 HOH HOH A . I 4 HOH 26 131 131 HOH HOH A . I 4 HOH 27 132 132 HOH HOH A . I 4 HOH 28 139 139 HOH HOH A . I 4 HOH 29 141 141 HOH HOH A . I 4 HOH 30 143 143 HOH HOH A . I 4 HOH 31 144 144 HOH HOH A . I 4 HOH 32 145 145 HOH HOH A . I 4 HOH 33 146 146 HOH HOH A . I 4 HOH 34 149 149 HOH HOH A . I 4 HOH 35 150 150 HOH HOH A . I 4 HOH 36 152 152 HOH HOH A . I 4 HOH 37 153 153 HOH HOH A . I 4 HOH 38 154 154 HOH HOH A . I 4 HOH 39 156 156 HOH HOH A . I 4 HOH 40 159 159 HOH HOH A . I 4 HOH 41 163 163 HOH HOH A . I 4 HOH 42 166 166 HOH HOH A . I 4 HOH 43 168 168 HOH HOH A . I 4 HOH 44 173 173 HOH HOH A . I 4 HOH 45 176 176 HOH HOH A . I 4 HOH 46 178 178 HOH HOH A . I 4 HOH 47 187 187 HOH HOH A . I 4 HOH 48 191 191 HOH HOH A . I 4 HOH 49 193 193 HOH HOH A . I 4 HOH 50 194 194 HOH HOH A . J 4 HOH 1 24 24 HOH HOH B . J 4 HOH 2 91 91 HOH HOH B . J 4 HOH 3 92 92 HOH HOH B . J 4 HOH 4 93 93 HOH HOH B . J 4 HOH 5 94 94 HOH HOH B . J 4 HOH 6 102 102 HOH HOH B . J 4 HOH 7 104 104 HOH HOH B . J 4 HOH 8 107 107 HOH HOH B . J 4 HOH 9 109 109 HOH HOH B . J 4 HOH 10 115 115 HOH HOH B . J 4 HOH 11 121 121 HOH HOH B . J 4 HOH 12 122 122 HOH HOH B . J 4 HOH 13 123 123 HOH HOH B . J 4 HOH 14 130 130 HOH HOH B . J 4 HOH 15 134 134 HOH HOH B . J 4 HOH 16 135 135 HOH HOH B . J 4 HOH 17 136 136 HOH HOH B . J 4 HOH 18 137 137 HOH HOH B . J 4 HOH 19 138 138 HOH HOH B . J 4 HOH 20 140 140 HOH HOH B . J 4 HOH 21 142 142 HOH HOH B . J 4 HOH 22 147 147 HOH HOH B . J 4 HOH 23 148 148 HOH HOH B . J 4 HOH 24 151 151 HOH HOH B . J 4 HOH 25 158 158 HOH HOH B . J 4 HOH 26 160 160 HOH HOH B . J 4 HOH 27 162 162 HOH HOH B . J 4 HOH 28 164 164 HOH HOH B . J 4 HOH 29 167 167 HOH HOH B . J 4 HOH 30 169 169 HOH HOH B . J 4 HOH 31 171 171 HOH HOH B . J 4 HOH 32 172 172 HOH HOH B . J 4 HOH 33 181 181 HOH HOH B . J 4 HOH 34 182 182 HOH HOH B . J 4 HOH 35 183 183 HOH HOH B . J 4 HOH 36 184 184 HOH HOH B . J 4 HOH 37 185 185 HOH HOH B . J 4 HOH 38 186 186 HOH HOH B . J 4 HOH 39 190 190 HOH HOH B . K 4 HOH 1 9 5 HOH HOH C . K 4 HOH 2 11 11 HOH HOH C . K 4 HOH 3 12 12 HOH HOH C . K 4 HOH 4 17 17 HOH HOH C . K 4 HOH 5 20 20 HOH HOH C . K 4 HOH 6 21 21 HOH HOH C . K 4 HOH 7 25 25 HOH HOH C . K 4 HOH 8 26 26 HOH HOH C . K 4 HOH 9 28 28 HOH HOH C . K 4 HOH 10 29 29 HOH HOH C . K 4 HOH 11 31 31 HOH HOH C . K 4 HOH 12 35 35 HOH HOH C . K 4 HOH 13 37 37 HOH HOH C . K 4 HOH 14 38 38 HOH HOH C . K 4 HOH 15 41 41 HOH HOH C . K 4 HOH 16 42 42 HOH HOH C . K 4 HOH 17 43 43 HOH HOH C . K 4 HOH 18 45 45 HOH HOH C . K 4 HOH 19 46 46 HOH HOH C . K 4 HOH 20 47 47 HOH HOH C . K 4 HOH 21 51 51 HOH HOH C . K 4 HOH 22 52 52 HOH HOH C . K 4 HOH 23 53 53 HOH HOH C . K 4 HOH 24 55 55 HOH HOH C . K 4 HOH 25 56 56 HOH HOH C . K 4 HOH 26 57 57 HOH HOH C . K 4 HOH 27 58 58 HOH HOH C . K 4 HOH 28 59 59 HOH HOH C . K 4 HOH 29 64 64 HOH HOH C . K 4 HOH 30 65 65 HOH HOH C . K 4 HOH 31 71 71 HOH HOH C . K 4 HOH 32 72 72 HOH HOH C . K 4 HOH 33 73 73 HOH HOH C . K 4 HOH 34 75 75 HOH HOH C . K 4 HOH 35 76 76 HOH HOH C . K 4 HOH 36 77 77 HOH HOH C . K 4 HOH 37 78 78 HOH HOH C . K 4 HOH 38 79 79 HOH HOH C . K 4 HOH 39 80 80 HOH HOH C . K 4 HOH 40 83 83 HOH HOH C . K 4 HOH 41 84 84 HOH HOH C . K 4 HOH 42 85 85 HOH HOH C . K 4 HOH 43 87 87 HOH HOH C . K 4 HOH 44 88 88 HOH HOH C . K 4 HOH 45 133 133 HOH HOH C . K 4 HOH 46 155 155 HOH HOH C . K 4 HOH 47 161 161 HOH HOH C . K 4 HOH 48 174 174 HOH HOH C . K 4 HOH 49 177 177 HOH HOH C . L 4 HOH 1 10 10 HOH HOH D . L 4 HOH 2 11 1 HOH HOH D . L 4 HOH 3 12 2 HOH HOH D . L 4 HOH 4 13 13 HOH HOH D . L 4 HOH 5 14 14 HOH HOH D . L 4 HOH 6 15 15 HOH HOH D . L 4 HOH 7 16 16 HOH HOH D . L 4 HOH 8 18 18 HOH HOH D . L 4 HOH 9 19 19 HOH HOH D . L 4 HOH 10 20 4 HOH HOH D . L 4 HOH 11 21 6 HOH HOH D . L 4 HOH 12 22 22 HOH HOH D . L 4 HOH 13 23 23 HOH HOH D . L 4 HOH 14 24 7 HOH HOH D . L 4 HOH 15 25 8 HOH HOH D . L 4 HOH 16 26 9 HOH HOH D . L 4 HOH 17 27 27 HOH HOH D . L 4 HOH 18 30 30 HOH HOH D . L 4 HOH 19 32 32 HOH HOH D . L 4 HOH 20 33 33 HOH HOH D . L 4 HOH 21 34 34 HOH HOH D . L 4 HOH 22 36 36 HOH HOH D . L 4 HOH 23 39 39 HOH HOH D . L 4 HOH 24 40 40 HOH HOH D . L 4 HOH 25 48 48 HOH HOH D . L 4 HOH 26 54 54 HOH HOH D . L 4 HOH 27 60 60 HOH HOH D . L 4 HOH 28 61 61 HOH HOH D . L 4 HOH 29 62 62 HOH HOH D . L 4 HOH 30 63 63 HOH HOH D . L 4 HOH 31 66 66 HOH HOH D . L 4 HOH 32 67 67 HOH HOH D . L 4 HOH 33 68 68 HOH HOH D . L 4 HOH 34 69 69 HOH HOH D . L 4 HOH 35 70 70 HOH HOH D . L 4 HOH 36 74 74 HOH HOH D . L 4 HOH 37 81 81 HOH HOH D . L 4 HOH 38 86 86 HOH HOH D . L 4 HOH 39 87 3 HOH HOH D . L 4 HOH 40 105 105 HOH HOH D . L 4 HOH 41 106 106 HOH HOH D . L 4 HOH 42 113 113 HOH HOH D . L 4 HOH 43 118 118 HOH HOH D . L 4 HOH 44 157 157 HOH HOH D . L 4 HOH 45 165 165 HOH HOH D . L 4 HOH 46 192 192 HOH HOH D . M 4 HOH 1 44 44 HOH HOH E . M 4 HOH 2 49 49 HOH HOH E . M 4 HOH 3 50 50 HOH HOH E . M 4 HOH 4 82 82 HOH HOH E . M 4 HOH 5 170 170 HOH HOH E . M 4 HOH 6 175 175 HOH HOH E . M 4 HOH 7 179 179 HOH HOH E . M 4 HOH 8 180 180 HOH HOH E . M 4 HOH 9 188 188 HOH HOH E . M 4 HOH 10 189 189 HOH HOH E . # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal PHASER . ? program 'Randy J. Read' cimr-phaser@lists.cam.ac.uk phasing http://www-structmed.cimr.cam.ac.uk/phaser/ ? ? 1 REFMAC . ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 2 PDB_EXTRACT 3.006 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 3 MAR345 CCD ? ? ? ? 'data collection' ? ? ? 4 DENZO . ? ? ? ? 'data reduction' ? ? ? 5 SCALEPACK . ? ? ? ? 'data scaling' ? ? ? 6 # _cell.length_a 36.96 _cell.length_b 38.85 _cell.length_c 77.72 _cell.angle_alpha 90.00 _cell.angle_beta 89.98 _cell.angle_gamma 90.00 _cell.entry_id 3GLP _cell.pdbx_unique_axis ? _cell.Z_PDB 20 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.entry_id 3GLP _symmetry.Int_Tables_number 5 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # _exptl.crystals_number 1 _exptl.entry_id 3GLP _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.22 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 44.48 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 5.5 _exptl_crystal_grow.temp 292 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details 'MgCl2, Li2SO4, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 292K' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.details 1 1 1 'Magnesium chloride' ? ? ? 1 2 1 'Lithium sulfate' ? ? ? 1 3 2 'Magnesium chloride' ? ? ? 1 4 2 'Lithium sulfate' ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MAR CCD 165 mm' _diffrn_detector.pdbx_collection_date 2007-12-14 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'Si(111)' _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.808 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'EMBL/DESY, HAMBURG BEAMLINE X13' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.808 _diffrn_source.pdbx_synchrotron_site 'EMBL/DESY, HAMBURG' _diffrn_source.pdbx_synchrotron_beamline X13 # _reflns.entry_id 3GLP _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I 0 _reflns.d_resolution_high 1.23 _reflns.d_resolution_low 20.0 _reflns.number_all 32055 _reflns.number_obs 32055 _reflns.percent_possible_obs 99.1 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.058 _reflns.pdbx_netI_over_sigmaI 21.3 _reflns.B_iso_Wilson_estimate 14.2 _reflns.pdbx_redundancy 7.1 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.23 _reflns_shell.d_res_low 1.25 _reflns_shell.percent_possible_obs ? _reflns_shell.percent_possible_all 98.1 _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_obs 5.7 _reflns_shell.pdbx_Rsym_value 0.30 _reflns_shell.pdbx_redundancy 6.2 _reflns_shell.number_unique_all 1502 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3GLP _refine.ls_d_res_high 1.23 _refine.ls_d_res_low 17.98 _refine.pdbx_ls_sigma_F ? _refine.ls_percent_reflns_obs 98.770 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details random _refine.ls_R_factor_obs 0.148 _refine.ls_R_factor_R_work 0.147 _refine.B_iso_mean 22.8 _refine.aniso_B[1][1] 0.090 _refine.aniso_B[2][2] 0.100 _refine.aniso_B[3][3] -0.190 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] -0.300 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.974 _refine.pdbx_overall_ESU_R 0.042 _refine.overall_SU_ML 0.021 _refine.overall_SU_B 1.049 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.overall_FOM_work_R_set 0.920 _refine.B_iso_max 54.46 _refine.B_iso_min 9.64 _refine.occupancy_max 1.00 _refine.occupancy_min 0.50 _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all 31664 _refine.ls_number_reflns_obs 30062 _refine.ls_number_reflns_R_free 1602 _refine.ls_R_factor_all 0.184 _refine.ls_R_factor_R_free 0.184 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model 'A-RNA model' _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model anisotropic _refine.details ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 3GLP _refine_analyze.Luzzati_coordinate_error_obs 0.042 _refine_analyze.Luzzati_sigma_a_obs 0.021 _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free 0.045 _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 830 _refine_hist.pdbx_number_atoms_ligand 16 _refine_hist.number_atoms_solvent 194 _refine_hist.number_atoms_total 1040 _refine_hist.d_res_high 1.23 _refine_hist.d_res_low 17.98 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1053 0.018 0.021 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1641 2.749 3.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 230 0.149 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 441 0.021 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 401 0.206 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 675 0.296 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 132 0.203 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 64 0.127 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 39 0.270 0.200 ? 'X-RAY DIFFRACTION' ? r_scbond_it 1453 3.418 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 1639 4.008 4.500 ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr 1453 2.661 3.000 ? 'X-RAY DIFFRACTION' ? r_sphericity_free 204 12.127 3.000 ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded 950 9.170 3.000 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 1.23 _refine_ls_shell.d_res_low 1.26 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 97.990 _refine_ls_shell.number_reflns_R_work 2293 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.186 _refine_ls_shell.R_factor_R_free 0.245 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 107 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs 2187 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3GLP _struct.title '1.23 A resolution X-ray structure of (GCUGCUGC)2' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag N _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3GLP _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'stretched U-U wobble, RNA, myotonic dystrophy, CUG repeats' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 1 ? F N N 2 ? G N N 3 ? H N N 2 ? I N N 4 ? J N N 4 ? K N N 4 ? L N N 4 ? M N N 4 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 3GLP _struct_ref.pdbx_db_accession 3GLP _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code GCUGCUGC _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3GLP A 1 ? 8 ? 3GLP 1 ? 8 ? 1 8 2 1 3GLP B 1 ? 8 ? 3GLP 1 ? 8 ? 1 8 3 1 3GLP C 1 ? 8 ? 3GLP 1 ? 8 ? 1 8 4 1 3GLP D 1 ? 8 ? 3GLP 1 ? 8 ? 1 8 5 1 3GLP E 1 ? 8 ? 3GLP 1 ? 8 ? 1 8 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA dimeric 2 2 author_and_software_defined_assembly PISA dimeric 2 3 author_and_software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1160 ? 1 MORE -18 ? 1 'SSA (A^2)' 3130 ? 2 'ABSA (A^2)' 900 ? 2 MORE -18 ? 2 'SSA (A^2)' 3150 ? 3 'ABSA (A^2)' 780 ? 3 MORE -9 ? 3 'SSA (A^2)' 3120 ? # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,F,G,I,J 2 1 C,D,H,K,L 3 1,2 E,M # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_555 -x,y,-z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 B C 8 N3 ? ? A G 1 B C 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 B C 8 O2 ? ? A G 1 B C 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 B C 8 N4 ? ? A G 1 B C 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A C 2 N3 ? ? ? 1_555 B G 7 N1 ? ? A C 2 B G 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A C 2 N4 ? ? ? 1_555 B G 7 O6 ? ? A C 2 B G 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 2 O2 ? ? ? 1_555 B G 7 N2 ? ? A C 2 B G 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A U 3 O4 ? ? ? 1_555 B U 6 N3 ? ? A U 3 B U 6 1_555 ? ? ? ? ? ? 'U-U MISPAIR' ? ? ? hydrog8 hydrog ? ? A G 4 N1 ? ? ? 1_555 B C 5 N3 A ? A G 4 B C 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 4 N1 ? ? ? 1_555 B C 5 N3 B ? A G 4 B C 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A G 4 N2 ? ? ? 1_555 B C 5 O2 A ? A G 4 B C 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A G 4 N2 ? ? ? 1_555 B C 5 O2 B ? A G 4 B C 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A G 4 O6 ? ? ? 1_555 B C 5 N4 A ? A G 4 B C 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A G 4 O6 ? ? ? 1_555 B C 5 N4 B ? A G 4 B C 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A C 5 N3 ? ? ? 1_555 B G 4 N1 ? ? A C 5 B G 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A C 5 N4 ? ? ? 1_555 B G 4 O6 ? ? A C 5 B G 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A C 5 O2 ? ? ? 1_555 B G 4 N2 ? ? A C 5 B G 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A U 6 O4 ? ? ? 1_555 B U 3 N3 A ? A U 6 B U 3 1_555 ? ? ? ? ? ? 'U-U MISPAIR' ? ? ? hydrog18 hydrog ? ? A U 6 O4 ? ? ? 1_555 B U 3 N3 B ? A U 6 B U 3 1_555 ? ? ? ? ? ? 'U-U MISPAIR' ? ? ? hydrog19 hydrog ? ? A G 7 N1 ? ? ? 1_555 B C 2 N3 B ? A G 7 B C 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A G 7 N1 ? ? ? 1_555 B C 2 N3 A ? A G 7 B C 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A G 7 N2 ? ? ? 1_555 B C 2 O2 B ? A G 7 B C 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A G 7 N2 ? ? ? 1_555 B C 2 O2 A ? A G 7 B C 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A G 7 O6 ? ? ? 1_555 B C 2 N4 B ? A G 7 B C 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A G 7 O6 ? ? ? 1_555 B C 2 N4 A ? A G 7 B C 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A C 8 N3 ? ? ? 1_555 B G 1 N1 ? ? A C 8 B G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A C 8 N4 ? ? ? 1_555 B G 1 O6 ? ? A C 8 B G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A C 8 O2 ? ? ? 1_555 B G 1 N2 ? ? A C 8 B G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? C G 1 N1 ? ? ? 1_555 D C 8 N3 ? ? C G 1 D C 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? C G 1 N2 ? ? ? 1_555 D C 8 O2 ? ? C G 1 D C 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? C G 1 O6 ? ? ? 1_555 D C 8 N4 ? ? C G 1 D C 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? C C 2 N3 ? ? ? 1_555 D G 7 N1 ? ? C C 2 D G 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? C C 2 N4 ? ? ? 1_555 D G 7 O6 ? ? C C 2 D G 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? C C 2 O2 ? ? ? 1_555 D G 7 N2 ? ? C C 2 D G 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? C U 3 N3 ? ? ? 1_555 D U 6 O4 ? ? C U 3 D U 6 1_555 ? ? ? ? ? ? 'U-U MISPAIR' ? ? ? hydrog35 hydrog ? ? C G 4 N1 ? ? ? 1_555 D C 5 N3 ? ? C G 4 D C 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? C G 4 N2 ? ? ? 1_555 D C 5 O2 ? ? C G 4 D C 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? C G 4 O6 ? ? ? 1_555 D C 5 N4 ? ? C G 4 D C 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? C C 5 N3 ? ? ? 1_555 D G 4 N1 ? ? C C 5 D G 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? C C 5 N4 ? ? ? 1_555 D G 4 O6 ? ? C C 5 D G 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? C C 5 O2 ? ? ? 1_555 D G 4 N2 ? ? C C 5 D G 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? C U 6 N3 A ? ? 1_555 D U 3 O4 ? ? C U 6 D U 3 1_555 ? ? ? ? ? ? 'U-U MISPAIR' ? ? ? hydrog42 hydrog ? ? C U 6 N3 B ? ? 1_555 D U 3 O4 ? ? C U 6 D U 3 1_555 ? ? ? ? ? ? 'U-U MISPAIR' ? ? ? hydrog43 hydrog ? ? C G 7 N1 ? ? ? 1_555 D C 2 N3 ? ? C G 7 D C 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? C G 7 N2 ? ? ? 1_555 D C 2 O2 ? ? C G 7 D C 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? C G 7 O6 ? ? ? 1_555 D C 2 N4 ? ? C G 7 D C 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? C C 8 N3 ? ? ? 1_555 D G 1 N1 ? ? C C 8 D G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? C C 8 N4 ? ? ? 1_555 D G 1 O6 ? ? C C 8 D G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? C C 8 O2 ? ? ? 1_555 D G 1 N2 ? ? C C 8 D G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A SO4 9 ? 11 'BINDING SITE FOR RESIDUE SO4 A 9' AC2 Software A GOL 10 ? 8 'BINDING SITE FOR RESIDUE GOL A 10' AC3 Software D SO4 9 ? 6 'BINDING SITE FOR RESIDUE SO4 D 9' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 11 G A 1 ? G A 1 . ? 1_555 ? 2 AC1 11 C A 2 ? C A 2 . ? 1_555 ? 3 AC1 11 HOH I . ? HOH A 100 . ? 1_555 ? 4 AC1 11 HOH I . ? HOH A 120 . ? 1_555 ? 5 AC1 11 HOH I . ? HOH A 124 . ? 1_555 ? 6 AC1 11 HOH I . ? HOH A 127 . ? 3_445 ? 7 AC1 11 HOH I . ? HOH A 143 . ? 3_445 ? 8 AC1 11 HOH I . ? HOH A 166 . ? 3_445 ? 9 AC1 11 HOH I . ? HOH A 194 . ? 1_555 ? 10 AC1 11 U B 3 ? U B 3 . ? 3_445 ? 11 AC1 11 HOH J . ? HOH B 147 . ? 1_555 ? 12 AC2 8 G A 1 ? G A 1 . ? 1_555 ? 13 AC2 8 C A 2 ? C A 2 . ? 1_555 ? 14 AC2 8 HOH I . ? HOH A 99 . ? 1_555 ? 15 AC2 8 HOH I . ? HOH A 126 . ? 1_555 ? 16 AC2 8 HOH I . ? HOH A 168 . ? 1_555 ? 17 AC2 8 C B 5 ? C B 5 . ? 1_555 ? 18 AC2 8 HOH J . ? HOH B 94 . ? 1_555 ? 19 AC2 8 HOH J . ? HOH B 160 . ? 1_555 ? 20 AC3 6 HOH K . ? HOH C 79 . ? 1_555 ? 21 AC3 6 C D 2 ? C D 2 . ? 1_555 ? 22 AC3 6 HOH L . ? HOH D 33 . ? 1_555 ? 23 AC3 6 HOH L . ? HOH D 61 . ? 1_555 ? 24 AC3 6 HOH L . ? HOH D 67 . ? 1_555 ? 25 AC3 6 HOH L . ? HOH D 70 . ? 1_555 ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 153 ? ? O A HOH 193 ? ? 2.11 2 1 O A HOH 125 ? ? O A HOH 193 ? ? 2.19 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 C5 A G 4 ? ? N7 A G 4 ? ? 1.347 1.388 -0.041 0.006 N 2 1 "O3'" B G 4 ? A "C3'" B G 4 ? ? 1.513 1.427 0.086 0.012 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 C6 A G 1 ? ? N1 A G 1 ? ? C2 A G 1 ? ? 121.39 125.10 -3.71 0.60 N 2 1 C4 A G 4 ? ? C5 A G 4 ? ? N7 A G 4 ? ? 113.41 110.80 2.61 0.40 N 3 1 C6 A U 6 ? ? N1 A U 6 ? ? C2 A U 6 ? ? 125.20 121.00 4.20 0.60 N 4 1 C5 A U 6 ? ? C6 A U 6 ? ? N1 A U 6 ? ? 119.28 122.70 -3.42 0.50 N 5 1 "C5'" B G 1 ? ? "C4'" B G 1 ? ? "C3'" B G 1 ? B 106.79 115.20 -8.41 1.40 N 6 1 "C4'" B G 1 ? ? "C3'" B G 1 ? B "O3'" B G 1 ? B 93.76 109.40 -15.64 2.10 N 7 1 "C2'" B G 1 ? ? "C3'" B G 1 ? B "O3'" B G 1 ? B 130.92 113.70 17.22 1.60 N 8 1 "C3'" B G 1 ? A "C2'" B G 1 ? ? "C1'" B G 1 ? ? 109.05 101.50 7.55 0.80 N 9 1 "C3'" B G 1 ? B "C2'" B G 1 ? ? "C1'" B G 1 ? ? 95.86 101.30 -5.44 0.70 N 10 1 "O4'" B G 1 ? ? "C1'" B G 1 ? ? "C2'" B G 1 ? ? 99.73 105.80 -6.07 1.00 N 11 1 C2 B G 1 ? ? N3 B G 1 ? ? C4 B G 1 ? ? 108.66 111.90 -3.24 0.50 N 12 1 N3 B G 1 ? ? C4 B G 1 ? ? C5 B G 1 ? ? 135.01 128.60 6.41 0.50 N 13 1 C4 B G 1 ? ? C5 B G 1 ? ? N7 B G 1 ? ? 114.23 110.80 3.43 0.40 N 14 1 C5 B G 1 ? ? N7 B G 1 ? ? C8 B G 1 ? ? 99.89 104.30 -4.41 0.50 N 15 1 N7 B G 1 ? ? C8 B G 1 ? ? N9 B G 1 ? ? 117.55 113.10 4.45 0.50 N 16 1 C8 B G 1 ? ? N9 B G 1 ? ? C4 B G 1 ? ? 102.25 106.40 -4.15 0.40 N 17 1 N3 B G 1 ? ? C4 B G 1 ? ? N9 B G 1 ? ? 118.93 126.00 -7.07 0.60 N 18 1 N1 B U 3 ? A C2 B U 3 ? A N3 B U 3 ? A 119.56 114.90 4.66 0.60 N 19 1 C2 B U 3 ? A N3 B U 3 ? A C4 B U 3 ? A 121.03 127.00 -5.97 0.60 N 20 1 N1 B U 3 ? A C2 B U 3 ? A O2 B U 3 ? A 114.53 122.80 -8.27 0.70 N 21 1 "C5'" B C 5 ? B "C4'" B C 5 ? B "C3'" B C 5 ? B 106.24 115.20 -8.96 1.40 N 22 1 C6 B C 5 ? B N1 B C 5 ? B C2 B C 5 ? B 116.11 120.30 -4.19 0.40 N 23 1 C2 B C 5 ? A N3 B C 5 ? A C4 B C 5 ? A 116.56 119.90 -3.34 0.50 N 24 1 "O5'" B U 6 ? B "C5'" B U 6 ? B "C4'" B U 6 ? ? 101.75 109.40 -7.65 0.80 N 25 1 "C5'" B U 6 ? B "C4'" B U 6 ? ? "C3'" B U 6 ? ? 126.72 116.00 10.72 1.60 N 26 1 "C5'" B U 6 ? B "C4'" B U 6 ? ? "O4'" B U 6 ? ? 116.08 109.80 6.28 0.90 N 27 1 N3 B U 6 ? ? C4 B U 6 ? ? C5 B U 6 ? ? 110.95 114.60 -3.65 0.60 N 28 1 C4 B U 6 ? ? C5 B U 6 ? ? C6 B U 6 ? ? 124.69 119.70 4.99 0.60 N 29 1 C5 B U 6 ? ? C6 B U 6 ? ? N1 B U 6 ? ? 119.29 122.70 -3.41 0.50 N 30 1 N9 C G 4 ? ? C4 C G 4 ? ? C5 C G 4 ? ? 107.88 105.40 2.48 0.40 N 31 1 "C5'" C C 5 ? B "C4'" C C 5 ? B "O4'" C C 5 ? B 118.82 109.80 9.02 0.90 N 32 1 "C1'" C C 5 ? ? "O4'" C C 5 ? B "C4'" C C 5 ? B 116.89 109.90 6.99 0.80 N 33 1 "C3'" C C 5 ? A "C2'" C C 5 ? A "C1'" C C 5 ? ? 95.28 101.30 -6.02 0.70 N 34 1 "C3'" C C 5 ? B "C2'" C C 5 ? B "C1'" C C 5 ? ? 108.99 101.50 7.49 0.80 N 35 1 "O4'" C C 5 ? B "C1'" C C 5 ? ? "C2'" C C 5 ? B 98.26 105.80 -7.54 1.00 N 36 1 N3 C C 5 ? ? C2 C C 5 ? ? O2 C C 5 ? ? 117.58 121.90 -4.32 0.70 N 37 1 P C U 6 ? B "O5'" C U 6 ? B "C5'" C U 6 ? B 130.73 120.90 9.83 1.60 N 38 1 C2 C U 6 ? A N3 C U 6 ? A C4 C U 6 ? A 123.04 127.00 -3.96 0.60 N 39 1 N3 C U 6 ? A C4 C U 6 ? A C5 C U 6 ? A 119.53 114.60 4.93 0.60 N 40 1 C2 C G 7 ? ? N3 C G 7 ? ? C4 C G 7 ? ? 108.61 111.90 -3.29 0.50 N 41 1 N3 C G 7 ? ? C4 C G 7 ? ? C5 C G 7 ? ? 133.13 128.60 4.53 0.50 N 42 1 N3 C G 7 ? ? C4 C G 7 ? ? N9 C G 7 ? ? 121.80 126.00 -4.20 0.60 N 43 1 N1 D G 1 ? ? C2 D G 1 ? ? N3 D G 1 ? ? 120.03 123.90 -3.87 0.60 N 44 1 N1 D G 1 ? ? C2 D G 1 ? ? N2 D G 1 ? ? 121.71 116.20 5.51 0.90 N 45 1 C2 D C 2 ? ? N3 D C 2 ? ? C4 D C 2 ? ? 122.91 119.90 3.01 0.50 N 46 1 N3 D C 2 ? ? C2 D C 2 ? ? O2 D C 2 ? ? 126.54 121.90 4.64 0.70 N 47 1 "C4'" D U 3 ? ? "C3'" D U 3 ? ? "C2'" D U 3 ? ? 94.27 102.60 -8.33 1.00 N 48 1 "C3'" D G 4 ? ? "C2'" D G 4 ? ? "C1'" D G 4 ? ? 95.21 101.30 -6.09 0.70 N 49 1 C4 D G 4 ? ? C5 D G 4 ? ? N7 D G 4 ? ? 107.98 110.80 -2.82 0.40 N 50 1 C5 D G 7 ? ? C6 D G 7 ? ? N1 D G 7 ? ? 114.61 111.50 3.11 0.50 N 51 1 "O4'" E C 2 ? ? "C1'" E C 2 ? ? N1 E C 2 ? ? 113.83 108.50 5.33 0.70 N # _diffrn_reflns.diffrn_id 1 _diffrn_reflns.pdbx_d_res_high 1.230 _diffrn_reflns.pdbx_d_res_low 20.000 _diffrn_reflns.pdbx_number_obs 62090 _diffrn_reflns.pdbx_Rmerge_I_obs 0.058 _diffrn_reflns.pdbx_Rsym_value ? _diffrn_reflns.pdbx_chi_squared 1.01 _diffrn_reflns.av_sigmaI_over_netI 19.80 _diffrn_reflns.pdbx_redundancy 3.60 _diffrn_reflns.pdbx_percent_possible_obs 99.00 _diffrn_reflns.number 224476 _diffrn_reflns.pdbx_observed_criterion ? _diffrn_reflns.limit_h_max ? _diffrn_reflns.limit_h_min ? _diffrn_reflns.limit_k_max ? _diffrn_reflns.limit_k_min ? _diffrn_reflns.limit_l_max ? _diffrn_reflns.limit_l_min ? # loop_ _pdbx_diffrn_reflns_shell.diffrn_id _pdbx_diffrn_reflns_shell.d_res_high _pdbx_diffrn_reflns_shell.d_res_low _pdbx_diffrn_reflns_shell.number_obs _pdbx_diffrn_reflns_shell.rejects _pdbx_diffrn_reflns_shell.Rmerge_I_obs _pdbx_diffrn_reflns_shell.Rsym_value _pdbx_diffrn_reflns_shell.chi_squared _pdbx_diffrn_reflns_shell.redundancy _pdbx_diffrn_reflns_shell.percent_possible_obs 1 3.33 20.00 ? ? 0.052 ? 1.007 4.00 95.40 1 2.65 3.33 ? ? 0.054 ? 0.987 4.90 97.60 1 2.31 2.65 ? ? 0.053 ? 1.070 5.10 100.00 1 2.10 2.31 ? ? 0.056 ? 1.037 5.10 100.00 1 1.95 2.10 ? ? 0.058 ? 1.049 4.50 100.00 1 1.84 1.95 ? ? 0.059 ? 1.022 3.30 99.80 1 1.75 1.84 ? ? 0.061 ? 1.013 3.30 99.90 1 1.67 1.75 ? ? 0.061 ? 1.006 3.30 99.70 1 1.60 1.67 ? ? 0.070 ? 0.984 3.30 99.70 1 1.55 1.60 ? ? 0.081 ? 1.018 3.30 99.50 1 1.50 1.55 ? ? 0.098 ? 1.017 3.30 99.60 1 1.46 1.50 ? ? 0.116 ? 0.981 3.20 99.30 1 1.42 1.46 ? ? 0.141 ? 1.004 3.30 99.40 1 1.39 1.42 ? ? 0.164 ? 1.005 3.30 99.20 1 1.35 1.39 ? ? 0.189 ? 1.006 3.30 99.10 1 1.32 1.35 ? ? 0.208 ? 1.023 3.20 99.00 1 1.30 1.32 ? ? 0.228 ? 1.003 3.30 99.00 1 1.27 1.30 ? ? 0.247 ? 0.969 3.20 98.50 1 1.25 1.27 ? ? 0.288 ? 0.962 3.20 98.70 1 1.23 1.25 ? ? 0.298 ? 1.054 3.10 97.60 # _pdbx_phasing_MR.entry_id 3GLP _pdbx_phasing_MR.method_rotation ? _pdbx_phasing_MR.method_translation ? _pdbx_phasing_MR.model_details 'Phaser MODE: MR_AUTO' _pdbx_phasing_MR.R_factor ? _pdbx_phasing_MR.R_rigid_body ? _pdbx_phasing_MR.correlation_coeff_Fo_to_Fc ? _pdbx_phasing_MR.correlation_coeff_Io_to_Ic ? _pdbx_phasing_MR.d_res_high_rotation 2.500 _pdbx_phasing_MR.d_res_low_rotation 18.620 _pdbx_phasing_MR.d_res_high_translation 2.500 _pdbx_phasing_MR.d_res_low_translation 18.620 _pdbx_phasing_MR.packing ? _pdbx_phasing_MR.reflns_percent_rotation ? _pdbx_phasing_MR.reflns_percent_translation ? _pdbx_phasing_MR.sigma_F_rotation ? _pdbx_phasing_MR.sigma_F_translation ? _pdbx_phasing_MR.sigma_I_rotation ? _pdbx_phasing_MR.sigma_I_translation ? # _phasing.method MR # loop_ _pdbx_distant_solvent_atoms.id _pdbx_distant_solvent_atoms.PDB_model_num _pdbx_distant_solvent_atoms.auth_atom_id _pdbx_distant_solvent_atoms.label_alt_id _pdbx_distant_solvent_atoms.auth_asym_id _pdbx_distant_solvent_atoms.auth_comp_id _pdbx_distant_solvent_atoms.auth_seq_id _pdbx_distant_solvent_atoms.PDB_ins_code _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance _pdbx_distant_solvent_atoms.neighbor_ligand_distance 1 1 O ? D HOH 165 ? 6.21 . 2 1 O ? E HOH 44 ? 11.62 . # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal C OP3 O N N 1 C P P N N 2 C OP1 O N N 3 C OP2 O N N 4 C "O5'" O N N 5 C "C5'" C N N 6 C "C4'" C N R 7 C "O4'" O N N 8 C "C3'" C N S 9 C "O3'" O N N 10 C "C2'" C N R 11 C "O2'" O N N 12 C "C1'" C N R 13 C N1 N N N 14 C C2 C N N 15 C O2 O N N 16 C N3 N N N 17 C C4 C N N 18 C N4 N N N 19 C C5 C N N 20 C C6 C N N 21 C HOP3 H N N 22 C HOP2 H N N 23 C "H5'" H N N 24 C "H5''" H N N 25 C "H4'" H N N 26 C "H3'" H N N 27 C "HO3'" H N N 28 C "H2'" H N N 29 C "HO2'" H N N 30 C "H1'" H N N 31 C H41 H N N 32 C H42 H N N 33 C H5 H N N 34 C H6 H N N 35 G OP3 O N N 36 G P P N N 37 G OP1 O N N 38 G OP2 O N N 39 G "O5'" O N N 40 G "C5'" C N N 41 G "C4'" C N R 42 G "O4'" O N N 43 G "C3'" C N S 44 G "O3'" O N N 45 G "C2'" C N R 46 G "O2'" O N N 47 G "C1'" C N R 48 G N9 N Y N 49 G C8 C Y N 50 G N7 N Y N 51 G C5 C Y N 52 G C6 C N N 53 G O6 O N N 54 G N1 N N N 55 G C2 C N N 56 G N2 N N N 57 G N3 N N N 58 G C4 C Y N 59 G HOP3 H N N 60 G HOP2 H N N 61 G "H5'" H N N 62 G "H5''" H N N 63 G "H4'" H N N 64 G "H3'" H N N 65 G "HO3'" H N N 66 G "H2'" H N N 67 G "HO2'" H N N 68 G "H1'" H N N 69 G H8 H N N 70 G H1 H N N 71 G H21 H N N 72 G H22 H N N 73 GOL C1 C N N 74 GOL O1 O N N 75 GOL C2 C N N 76 GOL O2 O N N 77 GOL C3 C N N 78 GOL O3 O N N 79 GOL H11 H N N 80 GOL H12 H N N 81 GOL HO1 H N N 82 GOL H2 H N N 83 GOL HO2 H N N 84 GOL H31 H N N 85 GOL H32 H N N 86 GOL HO3 H N N 87 HOH O O N N 88 HOH H1 H N N 89 HOH H2 H N N 90 SO4 S S N N 91 SO4 O1 O N N 92 SO4 O2 O N N 93 SO4 O3 O N N 94 SO4 O4 O N N 95 U OP3 O N N 96 U P P N N 97 U OP1 O N N 98 U OP2 O N N 99 U "O5'" O N N 100 U "C5'" C N N 101 U "C4'" C N R 102 U "O4'" O N N 103 U "C3'" C N S 104 U "O3'" O N N 105 U "C2'" C N R 106 U "O2'" O N N 107 U "C1'" C N R 108 U N1 N N N 109 U C2 C N N 110 U O2 O N N 111 U N3 N N N 112 U C4 C N N 113 U O4 O N N 114 U C5 C N N 115 U C6 C N N 116 U HOP3 H N N 117 U HOP2 H N N 118 U "H5'" H N N 119 U "H5''" H N N 120 U "H4'" H N N 121 U "H3'" H N N 122 U "HO3'" H N N 123 U "H2'" H N N 124 U "HO2'" H N N 125 U "H1'" H N N 126 U H3 H N N 127 U H5 H N N 128 U H6 H N N 129 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal C OP3 P sing N N 1 C OP3 HOP3 sing N N 2 C P OP1 doub N N 3 C P OP2 sing N N 4 C P "O5'" sing N N 5 C OP2 HOP2 sing N N 6 C "O5'" "C5'" sing N N 7 C "C5'" "C4'" sing N N 8 C "C5'" "H5'" sing N N 9 C "C5'" "H5''" sing N N 10 C "C4'" "O4'" sing N N 11 C "C4'" "C3'" sing N N 12 C "C4'" "H4'" sing N N 13 C "O4'" "C1'" sing N N 14 C "C3'" "O3'" sing N N 15 C "C3'" "C2'" sing N N 16 C "C3'" "H3'" sing N N 17 C "O3'" "HO3'" sing N N 18 C "C2'" "O2'" sing N N 19 C "C2'" "C1'" sing N N 20 C "C2'" "H2'" sing N N 21 C "O2'" "HO2'" sing N N 22 C "C1'" N1 sing N N 23 C "C1'" "H1'" sing N N 24 C N1 C2 sing N N 25 C N1 C6 sing N N 26 C C2 O2 doub N N 27 C C2 N3 sing N N 28 C N3 C4 doub N N 29 C C4 N4 sing N N 30 C C4 C5 sing N N 31 C N4 H41 sing N N 32 C N4 H42 sing N N 33 C C5 C6 doub N N 34 C C5 H5 sing N N 35 C C6 H6 sing N N 36 G OP3 P sing N N 37 G OP3 HOP3 sing N N 38 G P OP1 doub N N 39 G P OP2 sing N N 40 G P "O5'" sing N N 41 G OP2 HOP2 sing N N 42 G "O5'" "C5'" sing N N 43 G "C5'" "C4'" sing N N 44 G "C5'" "H5'" sing N N 45 G "C5'" "H5''" sing N N 46 G "C4'" "O4'" sing N N 47 G "C4'" "C3'" sing N N 48 G "C4'" "H4'" sing N N 49 G "O4'" "C1'" sing N N 50 G "C3'" "O3'" sing N N 51 G "C3'" "C2'" sing N N 52 G "C3'" "H3'" sing N N 53 G "O3'" "HO3'" sing N N 54 G "C2'" "O2'" sing N N 55 G "C2'" "C1'" sing N N 56 G "C2'" "H2'" sing N N 57 G "O2'" "HO2'" sing N N 58 G "C1'" N9 sing N N 59 G "C1'" "H1'" sing N N 60 G N9 C8 sing Y N 61 G N9 C4 sing Y N 62 G C8 N7 doub Y N 63 G C8 H8 sing N N 64 G N7 C5 sing Y N 65 G C5 C6 sing N N 66 G C5 C4 doub Y N 67 G C6 O6 doub N N 68 G C6 N1 sing N N 69 G N1 C2 sing N N 70 G N1 H1 sing N N 71 G C2 N2 sing N N 72 G C2 N3 doub N N 73 G N2 H21 sing N N 74 G N2 H22 sing N N 75 G N3 C4 sing N N 76 GOL C1 O1 sing N N 77 GOL C1 C2 sing N N 78 GOL C1 H11 sing N N 79 GOL C1 H12 sing N N 80 GOL O1 HO1 sing N N 81 GOL C2 O2 sing N N 82 GOL C2 C3 sing N N 83 GOL C2 H2 sing N N 84 GOL O2 HO2 sing N N 85 GOL C3 O3 sing N N 86 GOL C3 H31 sing N N 87 GOL C3 H32 sing N N 88 GOL O3 HO3 sing N N 89 HOH O H1 sing N N 90 HOH O H2 sing N N 91 SO4 S O1 doub N N 92 SO4 S O2 doub N N 93 SO4 S O3 sing N N 94 SO4 S O4 sing N N 95 U OP3 P sing N N 96 U OP3 HOP3 sing N N 97 U P OP1 doub N N 98 U P OP2 sing N N 99 U P "O5'" sing N N 100 U OP2 HOP2 sing N N 101 U "O5'" "C5'" sing N N 102 U "C5'" "C4'" sing N N 103 U "C5'" "H5'" sing N N 104 U "C5'" "H5''" sing N N 105 U "C4'" "O4'" sing N N 106 U "C4'" "C3'" sing N N 107 U "C4'" "H4'" sing N N 108 U "O4'" "C1'" sing N N 109 U "C3'" "O3'" sing N N 110 U "C3'" "C2'" sing N N 111 U "C3'" "H3'" sing N N 112 U "O3'" "HO3'" sing N N 113 U "C2'" "O2'" sing N N 114 U "C2'" "C1'" sing N N 115 U "C2'" "H2'" sing N N 116 U "O2'" "HO2'" sing N N 117 U "C1'" N1 sing N N 118 U "C1'" "H1'" sing N N 119 U N1 C2 sing N N 120 U N1 C6 sing N N 121 U C2 O2 doub N N 122 U C2 N3 sing N N 123 U N3 C4 sing N N 124 U N3 H3 sing N N 125 U C4 O4 doub N N 126 U C4 C5 sing N N 127 U C5 C6 doub N N 128 U C5 H5 sing N N 129 U C6 H6 sing N N 130 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3GLP 'double helix' 3GLP 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B G 1 1_555 A C 8 1_555 -0.278 -0.143 -0.040 -5.570 -2.527 0.552 1 B_G1:C8_A B 1 ? A 8 ? 19 1 1 B C 2 1_555 A G 7 1_555 0.048 -0.041 -0.265 2.273 -8.552 1.279 2 B_C2:G7_A B 2 ? A 7 ? 19 1 1 B U 3 1_555 A U 6 1_555 3.025 -1.314 -0.135 -14.013 -8.362 -16.368 3 B_U3:U6_A B 3 ? A 6 ? ? ? 1 B G 4 1_555 A C 5 1_555 -0.187 -0.097 -0.122 -10.571 -10.021 0.050 4 B_G4:C5_A B 4 ? A 5 ? 19 1 1 B C 5 1_555 A G 4 1_555 0.479 -0.195 0.053 -1.969 -1.839 -2.077 5 B_C5:G4_A B 5 ? A 4 ? 19 1 1 B U 6 1_555 A U 3 1_555 2.823 -1.188 -0.468 -12.513 -8.174 -31.496 6 B_U6:U3_A B 6 ? A 3 ? ? ? 1 B G 7 1_555 A C 2 1_555 -0.326 -0.118 -0.234 -21.340 -12.130 0.069 7 B_G7:C2_A B 7 ? A 2 ? 19 1 1 B C 8 1_555 A G 1 1_555 0.255 -0.077 0.194 -3.740 -3.772 -1.089 8 B_C8:G1_A B 8 ? A 1 ? 19 1 1 C G 1 1_555 D C 8 1_555 -0.326 -0.108 0.056 2.482 -5.876 2.113 9 C_G1:C8_D C 1 ? D 8 ? 19 1 1 C C 2 1_555 D G 7 1_555 0.183 -0.120 -0.236 4.874 -11.577 -1.213 10 C_C2:G7_D C 2 ? D 7 ? 19 1 1 C U 3 1_555 D U 6 1_555 2.982 -1.216 -0.443 -4.515 -8.688 -34.416 11 C_U3:U6_D C 3 ? D 6 ? ? ? 1 C G 4 1_555 D C 5 1_555 -0.130 -0.190 0.010 -0.672 -8.182 -0.498 12 C_G4:C5_D C 4 ? D 5 ? 19 1 1 C C 5 1_555 D G 4 1_555 0.084 -0.195 0.008 4.318 -8.511 -4.350 13 C_C5:G4_D C 5 ? D 4 ? 19 1 1 C U 6 1_555 D U 3 1_555 2.591 -1.509 -0.280 0.573 -15.807 -21.160 14 C_U6:U3_D C 6 ? D 3 ? ? ? 1 C G 7 1_555 D C 2 1_555 -0.359 -0.157 -0.110 -8.758 -14.872 1.942 15 C_G7:C2_D C 7 ? D 2 ? 19 1 1 C C 8 1_555 D G 1 1_555 0.272 -0.147 0.050 1.184 -6.649 -1.517 16 C_C8:G1_D C 8 ? D 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B G 1 1_555 A C 8 1_555 B C 2 1_555 A G 7 1_555 -0.746 -2.015 3.130 0.692 -1.668 33.130 -3.257 1.420 3.209 -2.923 -1.213 33.178 1 BB_G1C2:G7C8_AA B 1 ? A 8 ? B 2 ? A 7 ? 1 B C 2 1_555 A G 7 1_555 B U 3 1_555 A U 6 1_555 -0.692 -1.738 3.923 0.611 8.618 42.803 -3.290 0.998 3.516 11.667 -0.827 43.626 2 BB_C2U3:U6G7_AA B 2 ? A 7 ? B 3 ? A 6 ? 1 B U 3 1_555 A U 6 1_555 B G 4 1_555 A C 5 1_555 1.697 -1.984 3.082 8.553 10.817 21.664 -7.231 -1.641 2.343 25.698 -20.318 25.636 3 BB_U3G4:C5U6_AA B 3 ? A 6 ? B 4 ? A 5 ? 1 B G 4 1_555 A C 5 1_555 B C 5 1_555 A G 4 1_555 0.771 -2.345 3.161 2.275 1.905 24.607 -6.011 -1.142 3.031 4.449 -5.313 24.782 4 BB_G4C5:G4C5_AA B 4 ? A 5 ? B 5 ? A 4 ? 1 B C 5 1_555 A G 4 1_555 B U 6 1_555 A U 3 1_555 -1.530 -2.016 3.575 6.157 6.410 45.428 -3.126 2.485 3.058 8.208 -7.884 46.245 5 BB_C5U6:U3G4_AA B 5 ? A 4 ? B 6 ? A 3 ? 1 B U 6 1_555 A U 3 1_555 B G 7 1_555 A C 2 1_555 2.468 -1.670 3.424 8.252 13.431 25.895 -6.033 -2.989 2.873 27.019 -16.599 30.245 6 BB_U6G7:C2U3_AA B 6 ? A 3 ? B 7 ? A 2 ? 1 B G 7 1_555 A C 2 1_555 B C 8 1_555 A G 1 1_555 0.228 -0.856 2.965 -0.592 6.357 28.363 -2.931 -0.569 2.707 12.770 1.190 29.058 7 BB_G7C8:G1C2_AA B 7 ? A 2 ? B 8 ? A 1 ? 1 B C 8 1_555 A G 1 1_555 C G 1 1_555 D C 8 1_555 -0.128 -3.212 3.167 0.748 4.914 -20.874 6.477 -0.015 3.815 -13.320 2.028 -21.451 8 BC_C8G1:C8G1_DA B 8 ? A 1 ? C 1 ? D 8 ? 1 C G 1 1_555 D C 8 1_555 C C 2 1_555 D G 7 1_555 -0.595 -1.245 3.190 1.798 4.781 34.563 -2.759 1.249 2.963 7.992 -3.006 34.926 9 CC_G1C2:G7C8_DD C 1 ? D 8 ? C 2 ? D 7 ? 1 C C 2 1_555 D G 7 1_555 C U 3 1_555 D U 6 1_555 -1.545 -1.658 3.632 3.067 9.848 48.493 -2.745 2.083 3.162 11.835 -3.686 49.513 10 CC_C2U3:U6G7_DD C 2 ? D 7 ? C 3 ? D 6 ? 1 C U 3 1_555 D U 6 1_555 C G 4 1_555 D C 5 1_555 1.949 -2.205 3.116 2.326 12.779 16.213 -10.339 -4.646 1.308 38.285 -6.968 20.748 11 CC_U3G4:C5U6_DD C 3 ? D 6 ? C 4 ? D 5 ? 1 C G 4 1_555 D C 5 1_555 C C 5 1_555 D G 4 1_555 -0.166 -1.458 3.301 1.042 9.425 32.764 -3.911 0.441 2.781 16.288 -1.801 34.073 12 CC_G4C5:G4C5_DD C 4 ? D 5 ? C 5 ? D 4 ? 1 C C 5 1_555 D G 4 1_555 C U 6 1_555 D U 3 1_555 -0.535 -1.711 3.475 4.344 6.659 43.100 -2.939 1.138 3.125 8.973 -5.854 43.793 13 CC_C5U6:U3G4_DD C 5 ? D 4 ? C 6 ? D 3 ? 1 C U 6 1_555 D U 3 1_555 C G 7 1_555 D C 2 1_555 1.400 -1.790 3.344 4.652 12.262 23.030 -6.943 -1.907 2.342 27.987 -10.619 26.459 14 CC_U6G7:C2U3_DD C 6 ? D 3 ? C 7 ? D 2 ? 1 C G 7 1_555 D C 2 1_555 C C 8 1_555 D G 1 1_555 -0.377 -1.058 3.053 -1.719 4.166 33.629 -2.426 0.394 2.920 7.161 2.954 33.921 15 CC_G7C8:G1C2_DD C 7 ? D 2 ? C 8 ? D 1 ? # _pdbx_initial_refinement_model.accession_code ? _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'in silico model' _pdbx_initial_refinement_model.source_name Other _pdbx_initial_refinement_model.details 'A-form RNA' # _atom_sites.entry_id 3GLP _atom_sites.fract_transf_matrix[1][1] 0.027055 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] -0.000009 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.025739 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012867 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O P S # loop_