HEADER PROTEIN BINDING 15-MAR-09 3GMY TITLE CRYSTAL STRUCTURE OF BETA-LACTAMSE INHIBITORY PROTEIN-LIKE PROTEIN TITLE 2 (BLP), SELENOMETHIONINE DERIVATIVE COMPND MOL_ID: 1; COMPND 2 MOLECULE: BLP; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES CLAVULIGERUS; SOURCE 3 ORGANISM_TAXID: 1901; SOURCE 4 STRAIN: ATCC 27064; SOURCE 5 GENE: BLP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET26B KEYWDS 2-LAYER ALPHA/BETA SANDWICH, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR M.GRETES,N.C.J.STRYNADKA REVDAT 4 01-NOV-17 3GMY 1 REMARK REVDAT 3 02-JUN-09 3GMY 1 JRNL REVDAT 2 14-APR-09 3GMY 1 JRNL REVDAT 1 31-MAR-09 3GMY 0 JRNL AUTH M.GRETES,D.C.LIM,L.DE CASTRO,S.E.JENSEN,S.G.KANG,K.J.LEE, JRNL AUTH 2 N.C.STRYNADKA JRNL TITL INSIGHTS INTO POSITIVE AND NEGATIVE REQUIREMENTS FOR JRNL TITL 2 PROTEIN-PROTEIN INTERACTIONS BY CRYSTALLOGRAPHIC ANALYSIS OF JRNL TITL 3 THE BETA-LACTAMASE INHIBITORY PROTEINS BLIP, BLIP-I, AND JRNL TITL 4 BLP. JRNL REF J.MOL.BIOL. V. 389 289 2009 JRNL REFN ISSN 0022-2836 JRNL PMID 19332077 JRNL DOI 10.1016/J.JMB.2009.03.058 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 55.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 30103 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.273 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1598 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2171 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.1740 REMARK 3 BIN FREE R VALUE SET COUNT : 127 REMARK 3 BIN FREE R VALUE : 0.2540 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2472 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 479 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 11.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.21000 REMARK 3 B22 (A**2) : 0.33000 REMARK 3 B33 (A**2) : -0.55000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.321 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.149 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.091 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.930 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.906 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.840 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2569 ; 0.027 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3503 ; 2.090 ; 1.934 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 312 ; 6.946 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 131 ;42.189 ;23.893 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 394 ;13.558 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;18.831 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 357 ; 0.141 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2052 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1344 ; 0.249 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1777 ; 0.315 ; 0.500 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 602 ; 0.183 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 66 ; 0.286 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 60 ; 0.277 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1557 ; 2.267 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2518 ; 3.055 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1012 ; 2.696 ; 2.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 982 ; 3.478 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 2569 ; 2.111 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 479 ; 8.397 ; 3.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 2486 ; 3.783 ; 3.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3GMY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-MAR-09. REMARK 100 THE DEPOSITION ID IS D_1000052061. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-FEB-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SILICON (111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM Q315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30474 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 55.990 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 200 DATA REDUNDANCY : 7.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08400 REMARK 200 FOR THE DATA SET : 34.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.2 REMARK 200 DATA REDUNDANCY IN SHELL : 7.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.23000 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX, SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.68 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 11 MG/ML PROTEIN IN 30 MM TRIS, 150 MM REMARK 280 NACL MIXED 1:1 WITH WELL SOLUTION 30% PEG 4000, 0.2 M SODIUM REMARK 280 ACETATE TRIHYDRATE, PH 8.5, HANGING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 50.58350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 20.60400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.59750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 20.60400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 50.58350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.59750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CE MSE B 67 O HOH B 259 2.05 REMARK 500 O HOH B 313 O HOH B 327 2.05 REMARK 500 O HOH A 280 O HOH A 361 2.12 REMARK 500 CD GLN B 29 O HOH B 250 2.18 REMARK 500 O HOH A 335 O HOH A 451 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH2 ARG A 131 OH TYR B 47 1556 1.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 7 CD GLU A 7 OE1 0.067 REMARK 500 GLU A 68 CG GLU A 68 CD -0.150 REMARK 500 GLU A 108 CD GLU A 108 OE2 -0.077 REMARK 500 GLU B 68 CG GLU B 68 CD 0.102 REMARK 500 TYR B 82 CD1 TYR B 82 CE1 -0.095 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PHE A 54 CB - CG - CD1 ANGL. DEV. = 4.2 DEGREES REMARK 500 GLU A 68 OE1 - CD - OE2 ANGL. DEV. = 7.7 DEGREES REMARK 500 LYS A 128 CD - CE - NZ ANGL. DEV. = -14.2 DEGREES REMARK 500 ARG B 18 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 MSE B 77 CG - SE - CE ANGL. DEV. = -18.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 27 -138.93 61.56 REMARK 500 VAL A 35 -63.44 81.11 REMARK 500 THR A 76 10.81 -144.11 REMARK 500 ALA B 27 -138.13 51.56 REMARK 500 VAL B 35 -57.34 73.52 REMARK 500 THR B 76 16.99 -145.52 REMARK 500 PHE B 132 40.01 -96.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU A 153 PRO A 154 42.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3GMX RELATED DB: PDB REMARK 900 BLP NATIVE STRUCTURE AT 1.05 ANGSTROM RESOLUTION REMARK 900 RELATED ID: 3GMV RELATED DB: PDB REMARK 900 BETA-LACTAMASE INHIBITORY PROTEIN-I (BLIP-I) FROM STREPTOMYCES REMARK 900 EXFOLIATUS REMARK 900 RELATED ID: 3GMW RELATED DB: PDB REMARK 900 BETA-LACTAMASE INHIBITORY PROTEIN-I (BLIP-I) FROM STREPTOMYCES REMARK 900 EXFOLIATUS IN COMPLEX WITH TEM-1 BETA-LACTAMASE REMARK 900 RELATED ID: 3GMU RELATED DB: PDB REMARK 900 BETA-LACTAMASE INHIBITORY PROTEIN (BLIP) FROM STREPTOMYCES REMARK 900 CLAVULIGERUS DBREF 3GMY A 1 154 UNP P97062 P97062_STRCL 29 182 DBREF 3GMY B 1 154 UNP P97062 P97062_STRCL 29 182 SEQRES 1 A 154 TYR THR GLY PHE THR PRO GLU ARG TYR ASN LYS ILE GLN SEQRES 2 A 154 PHE GLY MSE ASP ARG THR LEU VAL TRP GLN LEU ALA GLY SEQRES 3 A 154 ALA ASP GLN SER CYS SER ASP GLN VAL GLU ARG ILE ILE SEQRES 4 A 154 CYS TYR ASN ASN PRO ASP HIS TYR GLY PRO GLN GLY HIS SEQRES 5 A 154 PHE PHE PHE ASN ALA ALA ASP LYS LEU ILE HIS LYS ARG SEQRES 6 A 154 GLN MSE GLU LEU PHE PRO ALA PRO LYS PRO THR MSE ARG SEQRES 7 A 154 LEU ALA THR TYR ASN LYS THR GLN THR GLY MSE THR GLU SEQRES 8 A 154 ALA GLN PHE TRP ALA ALA VAL PRO SER ASP THR CYS SER SEQRES 9 A 154 ALA LEU ALA GLU GLN TYR PRO ASN TRP PRO ALA THR ASN SEQRES 10 A 154 GLY ASN LEU ARG GLU TYR VAL CYS PRO SER LYS ALA GLU SEQRES 11 A 154 ARG PHE ALA PRO SER ALA TYR PHE THR PHE THR ASP GLY SEQRES 12 A 154 LYS LEU THR SER ARG SER GLN SER GLN LEU PRO SEQRES 1 B 154 TYR THR GLY PHE THR PRO GLU ARG TYR ASN LYS ILE GLN SEQRES 2 B 154 PHE GLY MSE ASP ARG THR LEU VAL TRP GLN LEU ALA GLY SEQRES 3 B 154 ALA ASP GLN SER CYS SER ASP GLN VAL GLU ARG ILE ILE SEQRES 4 B 154 CYS TYR ASN ASN PRO ASP HIS TYR GLY PRO GLN GLY HIS SEQRES 5 B 154 PHE PHE PHE ASN ALA ALA ASP LYS LEU ILE HIS LYS ARG SEQRES 6 B 154 GLN MSE GLU LEU PHE PRO ALA PRO LYS PRO THR MSE ARG SEQRES 7 B 154 LEU ALA THR TYR ASN LYS THR GLN THR GLY MSE THR GLU SEQRES 8 B 154 ALA GLN PHE TRP ALA ALA VAL PRO SER ASP THR CYS SER SEQRES 9 B 154 ALA LEU ALA GLU GLN TYR PRO ASN TRP PRO ALA THR ASN SEQRES 10 B 154 GLY ASN LEU ARG GLU TYR VAL CYS PRO SER LYS ALA GLU SEQRES 11 B 154 ARG PHE ALA PRO SER ALA TYR PHE THR PHE THR ASP GLY SEQRES 12 B 154 LYS LEU THR SER ARG SER GLN SER GLN LEU PRO MODRES 3GMY MSE A 16 MET SELENOMETHIONINE MODRES 3GMY MSE A 67 MET SELENOMETHIONINE MODRES 3GMY MSE A 77 MET SELENOMETHIONINE MODRES 3GMY MSE A 89 MET SELENOMETHIONINE MODRES 3GMY MSE B 16 MET SELENOMETHIONINE MODRES 3GMY MSE B 67 MET SELENOMETHIONINE MODRES 3GMY MSE B 77 MET SELENOMETHIONINE MODRES 3GMY MSE B 89 MET SELENOMETHIONINE HET MSE A 16 8 HET MSE A 67 8 HET MSE A 77 8 HET MSE A 89 8 HET MSE B 16 8 HET MSE B 67 8 HET MSE B 77 8 HET MSE B 89 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 3 HOH *479(H2 O) HELIX 1 1 THR A 5 ILE A 12 1 8 HELIX 2 2 ASP A 17 GLY A 26 1 10 HELIX 3 3 GLY A 26 SER A 30 1 5 HELIX 4 4 ARG A 78 ASN A 83 1 6 HELIX 5 5 THR A 90 VAL A 98 1 9 HELIX 6 6 PRO A 99 CYS A 103 5 5 HELIX 7 7 THR B 5 ILE B 12 1 8 HELIX 8 8 ASP B 17 GLY B 26 1 10 HELIX 9 9 GLY B 26 SER B 30 1 5 HELIX 10 10 ARG B 78 LYS B 84 1 7 HELIX 11 11 THR B 90 VAL B 98 1 9 HELIX 12 12 PRO B 99 CYS B 103 5 5 SHEET 1 A 8 CYS A 31 ASP A 33 0 SHEET 2 A 8 ILE A 38 TYR A 41 -1 O ILE A 39 N SER A 32 SHEET 3 A 8 GLN A 50 PHE A 55 -1 O GLY A 51 N CYS A 40 SHEET 4 A 8 LEU A 61 MSE A 67 -1 O ARG A 65 N HIS A 52 SHEET 5 A 8 SER A 104 GLN A 109 -1 O GLU A 108 N LYS A 64 SHEET 6 A 8 LEU A 120 PRO A 126 -1 O VAL A 124 N SER A 104 SHEET 7 A 8 SER A 135 THR A 141 -1 O ALA A 136 N CYS A 125 SHEET 8 A 8 LYS A 144 GLN A 150 -1 O SER A 149 N TYR A 137 SHEET 1 B 8 CYS B 31 ASP B 33 0 SHEET 2 B 8 ILE B 38 TYR B 41 -1 O ILE B 39 N SER B 32 SHEET 3 B 8 GLN B 50 PHE B 55 -1 O GLY B 51 N CYS B 40 SHEET 4 B 8 LEU B 61 MSE B 67 -1 O ARG B 65 N HIS B 52 SHEET 5 B 8 SER B 104 GLN B 109 -1 O GLU B 108 N LYS B 64 SHEET 6 B 8 LEU B 120 PRO B 126 -1 O VAL B 124 N SER B 104 SHEET 7 B 8 SER B 135 THR B 141 -1 O PHE B 138 N TYR B 123 SHEET 8 B 8 LYS B 144 SER B 151 -1 O LYS B 144 N THR B 141 SSBOND 1 CYS A 31 CYS A 40 1555 1555 2.11 SSBOND 2 CYS A 103 CYS A 125 1555 1555 2.10 SSBOND 3 CYS B 31 CYS B 40 1555 1555 2.10 SSBOND 4 CYS B 103 CYS B 125 1555 1555 2.07 LINK C GLY A 15 N MSE A 16 1555 1555 1.32 LINK C MSE A 16 N ASP A 17 1555 1555 1.32 LINK C GLN A 66 N MSE A 67 1555 1555 1.34 LINK C MSE A 67 N GLU A 68 1555 1555 1.34 LINK C THR A 76 N MSE A 77 1555 1555 1.34 LINK C MSE A 77 N ARG A 78 1555 1555 1.34 LINK C GLY A 88 N MSE A 89 1555 1555 1.33 LINK C MSE A 89 N THR A 90 1555 1555 1.33 LINK C GLY B 15 N MSE B 16 1555 1555 1.33 LINK C MSE B 16 N ASP B 17 1555 1555 1.33 LINK C GLN B 66 N MSE B 67 1555 1555 1.34 LINK C MSE B 67 N GLU B 68 1555 1555 1.34 LINK C THR B 76 N MSE B 77 1555 1555 1.32 LINK C MSE B 77 N ARG B 78 1555 1555 1.32 LINK C GLY B 88 N MSE B 89 1555 1555 1.35 LINK C MSE B 89 N THR B 90 1555 1555 1.35 CISPEP 1 TRP A 113 PRO A 114 0 13.38 CISPEP 2 TRP B 113 PRO B 114 0 12.17 CRYST1 101.167 67.195 41.208 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009885 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014882 0.000000 0.00000 SCALE3 0.000000 0.000000 0.024267 0.00000