HEADER STRUCTURAL PROTEIN 17-MAR-09 3GNG TITLE P21B CRYSTAL STRUCTURE OF R1-R7 OF MURINE MVP COMPND MOL_ID: 1; COMPND 2 MOLECULE: MAJOR VAULT PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: R1-R7 DOMAIN, UNP RESIDUES 1-383; COMPND 5 SYNONYM: MVP; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: MVP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX-6P1 KEYWDS BETA SHEETS, PHOSPHOPROTEIN, RIBONUCLEOPROTEIN, STRUCTURAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.QUEROL-AUDI,A.CASANAS,I.USON,J.R.CASTON,I.FITA,N.VERDAGUER REVDAT 4 01-NOV-23 3GNG 1 SEQADV REVDAT 3 13-JUL-11 3GNG 1 VERSN REVDAT 2 22-DEC-10 3GNG 1 JRNL REVDAT 1 10-NOV-09 3GNG 0 JRNL AUTH J.QUEROL-AUDI,A.CASANAS,I.USON,D.LUQUE,J.R.CASTON,I.FITA, JRNL AUTH 2 N.VERDAGUER JRNL TITL THE MECHANISM OF VAULT OPENING FROM THE HIGH RESOLUTION JRNL TITL 2 STRUCTURE OF THE N-TERMINAL REPEATS OF MVP JRNL REF EMBO J. V. 28 3450 2009 JRNL REFN ISSN 0261-4189 JRNL PMID 19779459 JRNL DOI 10.1038/EMBOJ.2009.274 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.70 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 3 NUMBER OF REFLECTIONS : 8896 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.258 REMARK 3 R VALUE (WORKING SET) : 0.257 REMARK 3 FREE R VALUE : 0.287 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 454 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.08 REMARK 3 REFLECTION IN BIN (WORKING SET) : 621 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.50 REMARK 3 BIN R VALUE (WORKING SET) : 0.3690 REMARK 3 BIN FREE R VALUE SET COUNT : 37 REMARK 3 BIN FREE R VALUE : 0.3480 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2959 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.74000 REMARK 3 B22 (A**2) : 0.31000 REMARK 3 B33 (A**2) : 0.53000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.48000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.510 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.435 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 52.192 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.885 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.849 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3014 ; 0.005 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4101 ; 0.768 ; 1.972 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 370 ; 3.341 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 146 ;32.407 ;24.178 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 516 ;13.490 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ; 7.119 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 468 ; 0.043 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2303 ; 0.001 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1055 ; 0.138 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1997 ; 0.290 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 57 ; 0.073 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 38 ; 0.099 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 3 ; 0.109 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1944 ; 0.023 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3022 ; 0.041 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1226 ; 0.059 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1079 ; 0.104 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 53 REMARK 3 ORIGIN FOR THE GROUP (A): -40.5070 1.2801 38.8364 REMARK 3 T TENSOR REMARK 3 T11: -0.1078 T22: -0.1393 REMARK 3 T33: -0.1240 T12: -0.0406 REMARK 3 T13: -0.1281 T23: -0.0155 REMARK 3 L TENSOR REMARK 3 L11: 13.2097 L22: 1.7588 REMARK 3 L33: 6.2801 L12: -0.0311 REMARK 3 L13: -6.9803 L23: 1.8393 REMARK 3 S TENSOR REMARK 3 S11: 0.0325 S12: -0.7088 S13: 0.0354 REMARK 3 S21: -0.1322 S22: -0.1417 S23: 0.2609 REMARK 3 S31: -0.2691 S32: -0.2838 S33: 0.1092 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 56 A 115 REMARK 3 ORIGIN FOR THE GROUP (A): -21.9633 4.6684 35.4281 REMARK 3 T TENSOR REMARK 3 T11: 0.0568 T22: -0.0364 REMARK 3 T33: 0.0609 T12: -0.0786 REMARK 3 T13: -0.0880 T23: -0.0788 REMARK 3 L TENSOR REMARK 3 L11: 11.4547 L22: 3.9600 REMARK 3 L33: 3.8161 L12: -4.1583 REMARK 3 L13: -5.3497 L23: 2.5817 REMARK 3 S TENSOR REMARK 3 S11: 0.0896 S12: -0.9757 S13: 0.8510 REMARK 3 S21: 0.2112 S22: 0.1559 S23: -0.2437 REMARK 3 S31: -0.2822 S32: 0.4188 S33: -0.2455 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 118 A 163 REMARK 3 ORIGIN FOR THE GROUP (A): -0.8707 4.2308 29.2276 REMARK 3 T TENSOR REMARK 3 T11: -0.1689 T22: -0.1445 REMARK 3 T33: 0.0029 T12: -0.0272 REMARK 3 T13: -0.0241 T23: -0.0629 REMARK 3 L TENSOR REMARK 3 L11: 5.0846 L22: 5.6782 REMARK 3 L33: 9.2429 L12: -1.3751 REMARK 3 L13: -1.6347 L23: 2.9844 REMARK 3 S TENSOR REMARK 3 S11: 0.1412 S12: -0.2585 S13: 0.2271 REMARK 3 S21: 0.0932 S22: -0.0340 S23: -0.4859 REMARK 3 S31: -0.0774 S32: 0.1690 S33: -0.1072 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 164 A 221 REMARK 3 ORIGIN FOR THE GROUP (A): 17.8529 -0.5492 16.9127 REMARK 3 T TENSOR REMARK 3 T11: 0.0136 T22: -0.0233 REMARK 3 T33: -0.0065 T12: -0.0390 REMARK 3 T13: 0.0569 T23: 0.0147 REMARK 3 L TENSOR REMARK 3 L11: 6.4803 L22: 6.8797 REMARK 3 L33: 5.1512 L12: -1.4407 REMARK 3 L13: -4.2455 L23: 2.1237 REMARK 3 S TENSOR REMARK 3 S11: 0.0330 S12: 0.3875 S13: 0.0129 REMARK 3 S21: -0.2384 S22: -0.1682 S23: 0.2362 REMARK 3 S31: 0.0814 S32: 0.0510 S33: 0.1352 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 222 A 276 REMARK 3 ORIGIN FOR THE GROUP (A): 35.2752 -1.1185 6.2661 REMARK 3 T TENSOR REMARK 3 T11: 0.1158 T22: 0.2008 REMARK 3 T33: 0.0477 T12: 0.0588 REMARK 3 T13: 0.0658 T23: 0.1265 REMARK 3 L TENSOR REMARK 3 L11: 6.4898 L22: 7.8439 REMARK 3 L33: 4.9943 L12: -1.4406 REMARK 3 L13: -3.4802 L23: 2.7114 REMARK 3 S TENSOR REMARK 3 S11: -0.0364 S12: 0.0626 S13: -0.1334 REMARK 3 S21: 0.1143 S22: -0.2415 S23: -0.3390 REMARK 3 S31: -0.0425 S32: -0.0452 S33: 0.2779 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 279 A 326 REMARK 3 ORIGIN FOR THE GROUP (A): 52.0077 -2.5193 -6.1629 REMARK 3 T TENSOR REMARK 3 T11: 0.1818 T22: 0.2048 REMARK 3 T33: 0.0782 T12: 0.0055 REMARK 3 T13: 0.0616 T23: 0.0662 REMARK 3 L TENSOR REMARK 3 L11: 9.6357 L22: 7.8056 REMARK 3 L33: 5.8335 L12: -4.6422 REMARK 3 L13: -7.1457 L23: 2.3887 REMARK 3 S TENSOR REMARK 3 S11: -0.3028 S12: -0.6447 S13: 0.2732 REMARK 3 S21: 0.4623 S22: 0.5932 S23: -0.0318 REMARK 3 S31: -0.1942 S32: 0.4588 S33: -0.2904 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 328 A 380 REMARK 3 ORIGIN FOR THE GROUP (A): 69.1744 -3.7397 -16.4304 REMARK 3 T TENSOR REMARK 3 T11: 0.0128 T22: 0.1787 REMARK 3 T33: -0.0114 T12: -0.0623 REMARK 3 T13: 0.0382 T23: -0.0880 REMARK 3 L TENSOR REMARK 3 L11: 7.7079 L22: 12.8703 REMARK 3 L33: 8.4750 L12: 1.4280 REMARK 3 L13: -1.7775 L23: 0.5779 REMARK 3 S TENSOR REMARK 3 S11: 0.1088 S12: -0.5390 S13: 0.1699 REMARK 3 S21: 0.7365 S22: 0.2033 S23: -0.2645 REMARK 3 S31: -0.2081 S32: 0.4314 S33: -0.3121 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3GNG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-APR-09. REMARK 100 THE DEPOSITION ID IS D_1000052079. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-APR-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8896 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.08 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 3GF5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.76 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 5000, 0.1M SODIUM CITRATE, PH REMARK 280 5.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 30.04350 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 PRO A -2 REMARK 465 LEU A -1 REMARK 465 GLY A 0 REMARK 465 MET A 1 REMARK 465 GLU A 342 REMARK 465 GLY A 343 REMARK 465 GLU A 344 REMARK 465 GLY A 345 REMARK 465 GLU A 346 REMARK 465 GLU A 347 REMARK 465 PRO A 381 REMARK 465 LEU A 382 REMARK 465 ASP A 383 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 3 OG1 CG2 REMARK 470 GLU A 4 CG CD OE1 OE2 REMARK 470 PRO A 278 CG CD REMARK 470 ARG A 279 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 341 CG CD OE1 OE2 REMARK 470 ARG A 348 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 N ALA A 2 CD LYS A 132 1455 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 3 -101.34 -56.72 REMARK 500 SER A 23 -9.29 -159.40 REMARK 500 ASN A 24 19.86 59.65 REMARK 500 ASP A 68 -159.52 -82.98 REMARK 500 SER A 71 -8.62 64.85 REMARK 500 ALA A 86 -55.97 77.38 REMARK 500 LEU A 92 -163.44 -100.08 REMARK 500 PRO A 101 106.18 -56.69 REMARK 500 LYS A 169 -169.93 -79.26 REMARK 500 ASN A 171 48.60 -98.31 REMARK 500 LEU A 213 -89.41 -106.15 REMARK 500 GLU A 305 84.30 52.13 REMARK 500 TYR A 324 99.17 -61.09 REMARK 500 GLN A 352 -122.69 -84.21 REMARK 500 ALA A 353 -94.31 -74.80 REMARK 500 ALA A 379 88.11 56.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3GF5 RELATED DB: PDB REMARK 900 P21 R1-R7 STRUCTURE REMARK 900 RELATED ID: 3GNF RELATED DB: PDB REMARK 900 P1 R1-R7 STRUCTURE DBREF 3GNG A 1 383 UNP Q9EQK5 MVP_MOUSE 1 383 SEQADV 3GNG GLY A -3 UNP Q9EQK5 EXPRESSION TAG SEQADV 3GNG PRO A -2 UNP Q9EQK5 EXPRESSION TAG SEQADV 3GNG LEU A -1 UNP Q9EQK5 EXPRESSION TAG SEQADV 3GNG GLY A 0 UNP Q9EQK5 EXPRESSION TAG SEQRES 1 A 387 GLY PRO LEU GLY MET ALA THR GLU GLU ALA ILE ILE ARG SEQRES 2 A 387 ILE PRO PRO TYR HIS TYR ILE HIS VAL LEU ASP GLN ASN SEQRES 3 A 387 SER ASN VAL SER ARG VAL GLU VAL GLY PRO LYS THR TYR SEQRES 4 A 387 ILE ARG GLN ASP ASN GLU ARG VAL LEU PHE ALA PRO VAL SEQRES 5 A 387 ARG MET VAL THR VAL PRO PRO ARG HIS TYR CYS ILE VAL SEQRES 6 A 387 ALA ASN PRO VAL SER ARG ASP ALA GLN SER SER VAL LEU SEQRES 7 A 387 PHE ASP VAL THR GLY GLN VAL ARG LEU ARG HIS ALA ASP SEQRES 8 A 387 GLN GLU ILE ARG LEU ALA GLN ASP PRO PHE PRO LEU TYR SEQRES 9 A 387 PRO GLY GLU LEU LEU GLU LYS ASP ILE THR PRO LEU GLN SEQRES 10 A 387 VAL VAL LEU PRO ASN THR ALA LEU HIS LEU LYS ALA LEU SEQRES 11 A 387 LEU ASP PHE GLU ASP LYS ASN GLY ASP LYS VAL MET ALA SEQRES 12 A 387 GLY ASP GLU TRP LEU PHE GLU GLY PRO GLY THR TYR ILE SEQRES 13 A 387 PRO GLN LYS GLU VAL GLU VAL VAL GLU ILE ILE GLN ALA SEQRES 14 A 387 THR VAL ILE LYS GLN ASN GLN ALA LEU ARG LEU ARG ALA SEQRES 15 A 387 ARG LYS GLU CYS PHE ASP ARG ASP GLY LYS GLU ARG VAL SEQRES 16 A 387 THR GLY GLU GLU TRP LEU VAL ARG SER VAL GLY ALA TYR SEQRES 17 A 387 LEU PRO ALA VAL PHE GLU GLU VAL LEU ASP LEU VAL ASP SEQRES 18 A 387 ALA VAL ILE LEU THR GLU LYS THR ALA LEU HIS LEU ARG SEQRES 19 A 387 ALA ARG GLN ASN PHE LYS ASP LEU ARG GLY VAL ALA HIS SEQRES 20 A 387 ARG THR GLY GLU GLU TRP LEU VAL THR VAL GLN ASP THR SEQRES 21 A 387 GLU ALA HIS VAL PRO ASP VAL TYR GLU GLU VAL LEU GLY SEQRES 22 A 387 VAL VAL PRO ILE THR THR LEU GLY PRO ARG HIS TYR CYS SEQRES 23 A 387 VAL ILE LEU ASP PRO MET GLY PRO ASP GLY LYS ASN GLN SEQRES 24 A 387 LEU GLY GLN LYS ARG VAL VAL LYS GLY GLU LYS SER PHE SEQRES 25 A 387 PHE LEU GLN PRO GLY GLU ARG LEU GLU ARG GLY ILE GLN SEQRES 26 A 387 ASP VAL TYR VAL LEU SER GLU GLN GLN GLY LEU LEU LEU SEQRES 27 A 387 LYS ALA LEU GLN PRO LEU GLU GLU GLY GLU GLY GLU GLU SEQRES 28 A 387 ARG VAL ALA HIS GLN ALA GLY ASP ARG TRP LEU ILE ARG SEQRES 29 A 387 GLY PRO LEU GLU TYR VAL PRO SER ALA LYS VAL GLU VAL SEQRES 30 A 387 VAL GLU GLU ARG GLN ALA ILE PRO LEU ASP SHEET 1 A 2 ILE A 7 ILE A 10 0 SHEET 2 A 2 LYS A 33 ILE A 36 -1 O TYR A 35 N ILE A 8 SHEET 1 B 3 SER A 26 VAL A 30 0 SHEET 2 B 3 HIS A 14 ASP A 20 -1 N VAL A 18 O ARG A 27 SHEET 3 B 3 GLU A 41 VAL A 43 -1 O ARG A 42 N LEU A 19 SHEET 1 C 3 SER A 26 VAL A 30 0 SHEET 2 C 3 HIS A 14 ASP A 20 -1 N VAL A 18 O ARG A 27 SHEET 3 C 3 VAL A 48 ARG A 49 -1 O VAL A 48 N TYR A 15 SHEET 1 D 2 VAL A 51 VAL A 53 0 SHEET 2 D 2 GLN A 94 PHE A 97 -1 O PHE A 97 N VAL A 51 SHEET 1 E 3 GLN A 88 ARG A 91 0 SHEET 2 E 3 HIS A 57 ALA A 62 -1 N VAL A 61 O GLU A 89 SHEET 3 E 3 LEU A 104 PRO A 111 -1 O THR A 110 N TYR A 58 SHEET 1 F 2 GLN A 113 VAL A 115 0 SHEET 2 F 2 GLY A 149 TYR A 151 -1 O TYR A 151 N GLN A 113 SHEET 1 G 3 GLU A 142 GLU A 146 0 SHEET 2 G 3 THR A 119 ALA A 125 -1 N LEU A 123 O TRP A 143 SHEET 3 G 3 VAL A 157 GLN A 164 -1 O ILE A 163 N ALA A 120 SHEET 1 H 2 PHE A 129 GLU A 130 0 SHEET 2 H 2 LYS A 136 VAL A 137 -1 O VAL A 137 N PHE A 129 SHEET 1 I 2 THR A 166 ILE A 168 0 SHEET 2 I 2 GLY A 202 TYR A 204 -1 O GLY A 202 N ILE A 168 SHEET 1 J 3 GLU A 195 VAL A 198 0 SHEET 2 J 3 GLN A 172 ALA A 178 -1 N LEU A 176 O TRP A 196 SHEET 3 J 3 GLU A 210 ASP A 217 -1 O VAL A 216 N ALA A 173 SHEET 1 K 2 CYS A 182 PHE A 183 0 SHEET 2 K 2 GLU A 189 ARG A 190 -1 O ARG A 190 N CYS A 182 SHEET 1 L 2 VAL A 219 ILE A 220 0 SHEET 2 L 2 ALA A 258 HIS A 259 -1 O HIS A 259 N VAL A 219 SHEET 1 M 4 GLU A 248 VAL A 251 0 SHEET 2 M 4 THR A 225 ALA A 231 -1 N LEU A 229 O TRP A 249 SHEET 3 M 4 GLU A 265 THR A 275 -1 O VAL A 271 N ALA A 226 SHEET 4 M 4 SER A 307 PHE A 309 -1 O PHE A 308 N THR A 274 SHEET 1 N 2 PHE A 235 LYS A 236 0 SHEET 2 N 2 ALA A 242 HIS A 243 -1 O HIS A 243 N PHE A 235 SHEET 1 O 3 LYS A 299 LYS A 303 0 SHEET 2 O 3 HIS A 280 LEU A 285 -1 N ILE A 284 O ARG A 300 SHEET 3 O 3 ARG A 315 LEU A 316 -1 O ARG A 315 N LEU A 285 SHEET 1 P 3 LYS A 299 LYS A 303 0 SHEET 2 P 3 HIS A 280 LEU A 285 -1 N ILE A 284 O ARG A 300 SHEET 3 P 3 GLN A 321 ASP A 322 -1 O GLN A 321 N TYR A 281 SHEET 1 Q 2 TYR A 324 VAL A 325 0 SHEET 2 Q 2 GLU A 364 TYR A 365 -1 O TYR A 365 N TYR A 324 SHEET 1 R 3 ARG A 356 ARG A 360 0 SHEET 2 R 3 GLY A 331 ALA A 336 -1 N LEU A 332 O ILE A 359 SHEET 3 R 3 VAL A 371 ARG A 377 -1 O GLU A 375 N LEU A 333 CISPEP 1 GLY A 31 PRO A 32 0 -0.10 CISPEP 2 GLY A 147 PRO A 148 0 -0.07 CISPEP 3 GLY A 361 PRO A 362 0 -1.00 CRYST1 58.776 60.087 68.628 90.00 95.34 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017014 0.000000 0.001590 0.00000 SCALE2 0.000000 0.016643 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014635 0.00000