HEADER OXIDOREDUCTASE 18-MAR-09 3GNT TITLE CRYSTAL STRUCTURE OF THE STAPHYLOCOCCUS AUREUS ENOYL-ACYL CARRIER TITLE 2 PROTEIN REDUCTASE (FABI) IN APO FORM (TWO MOLECULES IN AU) COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENOYL-[ACYL-CARRIER-PROTEIN] REDUCTASE [NADH]; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.3.1.9; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 1280; SOURCE 4 STRAIN: MRSA252; SOURCE 5 GENE: FABI; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS ENOYL REDUCTASE, ROSSMANN FOLD, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR A.PRIYADARSHI,K.Y.HWANG REVDAT 3 01-NOV-23 3GNT 1 REMARK REVDAT 2 12-FEB-14 3GNT 1 JRNL VERSN REVDAT 1 20-OCT-09 3GNT 0 JRNL AUTH A.PRIYADARSHI,E.E.KIM,K.Y.HWANG JRNL TITL STRUCTURAL INSIGHTS INTO STAPHYLOCOCCUS AUREUS ENOYL-ACP JRNL TITL 2 REDUCTASE (FABI), IN COMPLEX WITH NADP AND TRICLOSAN. JRNL REF PROTEINS V. 78 480 2010 JRNL REFN ISSN 0887-3585 JRNL PMID 19768684 JRNL DOI 10.1002/PROT.22581 REMARK 2 REMARK 2 RESOLUTION. 2.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.96 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 84.0 REMARK 3 NUMBER OF REFLECTIONS : 10886 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.243 REMARK 3 R VALUE (WORKING SET) : 0.242 REMARK 3 FREE R VALUE : 0.278 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 548 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.82 REMARK 3 REFLECTION IN BIN (WORKING SET) : 434 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 45.21 REMARK 3 BIN R VALUE (WORKING SET) : 0.3080 REMARK 3 BIN FREE R VALUE SET COUNT : 14 REMARK 3 BIN FREE R VALUE : 0.4030 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3157 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 36.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.97 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.12000 REMARK 3 B22 (A**2) : -0.14000 REMARK 3 B33 (A**2) : 0.05000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.03000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.444 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.278 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.349 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.879 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.869 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3194 ; 0.046 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4302 ; 4.260 ; 1.976 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 399 ;22.748 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 142 ;45.602 ;25.282 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 594 ;29.959 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;27.305 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 503 ; 0.736 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2335 ; 0.016 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2217 ; 0.435 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2228 ; 0.398 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 194 ; 0.297 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 23 ; 0.464 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2075 ; 2.224 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3224 ; 3.073 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1272 ; 5.057 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1078 ; 7.129 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3GNT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-MAR-09. REMARK 100 THE DEPOSITION ID IS D_1000052092. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-MAY-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 6C1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10886 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.750 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : 0.17000 REMARK 200 FOR THE DATA SET : 12.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 47.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.10 REMARK 200 R MERGE FOR SHELL (I) : 0.18000 REMARK 200 R SYM FOR SHELL (I) : 0.17000 REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2PD3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG 400, 0.1M TRIS PH 8.0, 4% REMARK 280 GLYCEROL, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 57.54950 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.23100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 57.54950 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 37.23100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -80.49047 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -61.54576 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18760 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 95 REMARK 465 PHE A 96 REMARK 465 ALA A 97 REMARK 465 ASN A 98 REMARK 465 MET A 99 REMARK 465 GLU A 100 REMARK 465 ASP A 101 REMARK 465 LEU A 102 REMARK 465 ARG A 103 REMARK 465 GLY A 104 REMARK 465 ARG A 105 REMARK 465 PHE A 106 REMARK 465 SER A 107 REMARK 465 GLU A 108 REMARK 465 THR A 109 REMARK 465 SER A 110 REMARK 465 ARG A 111 REMARK 465 GLU A 112 REMARK 465 GLY A 113 REMARK 465 PHE A 114 REMARK 465 LEU A 115 REMARK 465 LEU A 116 REMARK 465 ALA A 117 REMARK 465 GLN A 118 REMARK 465 ASP A 119 REMARK 465 LEU A 148 REMARK 465 GLY A 149 REMARK 465 GLY A 150 REMARK 465 GLU A 151 REMARK 465 PHE A 152 REMARK 465 ALA A 153 REMARK 465 VAL A 154 REMARK 465 GLN A 155 REMARK 465 ASN A 156 REMARK 465 TYR A 157 REMARK 465 ASN A 158 REMARK 465 VAL A 159 REMARK 465 MET A 160 REMARK 465 GLY A 161 REMARK 465 VAL A 162 REMARK 465 ALA A 163 REMARK 465 LEU A 196 REMARK 465 SER A 197 REMARK 465 ALA A 198 REMARK 465 LYS A 199 REMARK 465 GLY A 200 REMARK 465 VAL A 201 REMARK 465 GLY A 202 REMARK 465 GLY A 203 REMARK 465 ILE B 94 REMARK 465 ALA B 95 REMARK 465 PHE B 96 REMARK 465 ALA B 97 REMARK 465 ASN B 98 REMARK 465 MET B 99 REMARK 465 GLU B 100 REMARK 465 ASP B 101 REMARK 465 LEU B 102 REMARK 465 ARG B 103 REMARK 465 GLY B 104 REMARK 465 ARG B 105 REMARK 465 PHE B 106 REMARK 465 SER B 107 REMARK 465 GLU B 108 REMARK 465 THR B 109 REMARK 465 SER B 110 REMARK 465 ARG B 111 REMARK 465 GLU B 112 REMARK 465 GLY B 113 REMARK 465 PHE B 114 REMARK 465 LEU B 115 REMARK 465 LEU B 116 REMARK 465 ALA B 117 REMARK 465 GLN B 118 REMARK 465 ASP B 119 REMARK 465 LEU B 148 REMARK 465 GLY B 149 REMARK 465 GLY B 150 REMARK 465 GLU B 151 REMARK 465 PHE B 152 REMARK 465 ALA B 153 REMARK 465 VAL B 154 REMARK 465 GLN B 155 REMARK 465 ASN B 156 REMARK 465 TYR B 157 REMARK 465 ASN B 158 REMARK 465 VAL B 159 REMARK 465 MET B 160 REMARK 465 GLY B 161 REMARK 465 VAL B 162 REMARK 465 ALA B 163 REMARK 465 THR B 195 REMARK 465 LEU B 196 REMARK 465 SER B 197 REMARK 465 ALA B 198 REMARK 465 LYS B 199 REMARK 465 GLY B 200 REMARK 465 VAL B 201 REMARK 465 GLY B 202 REMARK 465 GLY B 203 REMARK 465 PHE B 204 REMARK 465 ASN B 205 REMARK 465 THR B 206 REMARK 465 ILE B 207 REMARK 465 LYS B 256 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 MET A 1 CG MET A 1 SD 0.176 REMARK 500 VAL A 10 CB VAL A 10 CG2 -0.135 REMARK 500 ILE A 11 CA ILE A 11 CB -0.201 REMARK 500 ILE A 20 CB ILE A 20 CG2 -0.203 REMARK 500 PHE A 37 CE1 PHE A 37 CZ 0.125 REMARK 500 GLU A 72 CG GLU A 72 CD 0.105 REMARK 500 GLU A 78 CG GLU A 78 CD 0.117 REMARK 500 GLU A 138 CG GLU A 138 CD -0.110 REMARK 500 TYR A 147 CG TYR A 147 CD1 0.090 REMARK 500 TYR A 147 CE1 TYR A 147 CZ 0.091 REMARK 500 TYR A 173 CB TYR A 173 CG -0.104 REMARK 500 SER A 235 CA SER A 235 CB 0.092 REMARK 500 SER B 19 C SER B 19 O 0.121 REMARK 500 LEU B 35 N LEU B 35 CA -0.121 REMARK 500 TYR B 39 CD1 TYR B 39 CE1 0.111 REMARK 500 TYR B 39 CE2 TYR B 39 CD2 0.105 REMARK 500 GLU B 131 CG GLU B 131 CD 0.105 REMARK 500 TYR B 147 CG TYR B 147 CD1 0.088 REMARK 500 TYR B 147 CZ TYR B 147 CE2 0.099 REMARK 500 LYS B 164 CE LYS B 164 NZ 0.168 REMARK 500 PRO B 180 N PRO B 180 CA -0.119 REMARK 500 ASP B 222 CB ASP B 222 CG -0.202 REMARK 500 ALA B 230 CA ALA B 230 CB -0.143 REMARK 500 TYR B 232 CZ TYR B 232 CE2 -0.081 REMARK 500 VAL B 241 CA VAL B 241 CB -0.145 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 1 CA - CB - CG ANGL. DEV. = -14.2 DEGREES REMARK 500 MET A 1 CG - SD - CE ANGL. DEV. = 13.8 DEGREES REMARK 500 LEU A 2 CA - CB - CG ANGL. DEV. = -19.7 DEGREES REMARK 500 LEU A 2 CB - CG - CD1 ANGL. DEV. = -14.2 DEGREES REMARK 500 LEU A 2 CB - CG - CD2 ANGL. DEV. = 12.1 DEGREES REMARK 500 ASN A 6 CB - CA - C ANGL. DEV. = -12.1 DEGREES REMARK 500 ILE A 11 CB - CA - C ANGL. DEV. = -19.3 DEGREES REMARK 500 MET A 12 CA - CB - CG ANGL. DEV. = 10.7 DEGREES REMARK 500 MET A 12 CB - CG - SD ANGL. DEV. = -20.0 DEGREES REMARK 500 ARG A 18 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 18 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 SER A 19 N - CA - C ANGL. DEV. = -16.9 DEGREES REMARK 500 LEU A 28 CA - CB - CG ANGL. DEV. = -22.5 DEGREES REMARK 500 THR A 38 CB - CA - C ANGL. DEV. = -16.6 DEGREES REMARK 500 THR A 38 CA - CB - OG1 ANGL. DEV. = 13.8 DEGREES REMARK 500 TYR A 39 CB - CG - CD2 ANGL. DEV. = -3.9 DEGREES REMARK 500 ARG A 45 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 ARG A 45 NE - CZ - NH2 ANGL. DEV. = -6.2 DEGREES REMARK 500 GLU A 49 CB - CA - C ANGL. DEV. = -26.1 DEGREES REMARK 500 LEU A 51 N - CA - C ANGL. DEV. = -17.2 DEGREES REMARK 500 PRO A 58 C - N - CA ANGL. DEV. = -16.7 DEGREES REMARK 500 PRO A 58 C - N - CD ANGL. DEV. = 16.1 DEGREES REMARK 500 LEU A 62 CB - CG - CD1 ANGL. DEV. = 12.9 DEGREES REMARK 500 ASP A 83 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASN A 86 N - CA - C ANGL. DEV. = 16.4 DEGREES REMARK 500 ASP A 88 CB - CG - OD1 ANGL. DEV. = -7.5 DEGREES REMARK 500 ASP A 88 CB - CG - OD2 ANGL. DEV. = 10.0 DEGREES REMARK 500 MET A 136 CG - SD - CE ANGL. DEV. = -13.1 DEGREES REMARK 500 VAL A 143 CB - CA - C ANGL. DEV. = -12.2 DEGREES REMARK 500 ASN A 170 C - N - CA ANGL. DEV. = -17.2 DEGREES REMARK 500 LEU A 174 CA - CB - CG ANGL. DEV. = 19.1 DEGREES REMARK 500 ILE A 188 CB - CA - C ANGL. DEV. = -12.5 DEGREES REMARK 500 ARG A 194 NE - CZ - NH1 ANGL. DEV. = -3.8 DEGREES REMARK 500 ASP A 222 CB - CG - OD1 ANGL. DEV. = 7.2 DEGREES REMARK 500 LEU A 233 CB - CG - CD1 ANGL. DEV. = 11.9 DEGREES REMARK 500 GLU A 244 OE1 - CD - OE2 ANGL. DEV. = -8.8 DEGREES REMARK 500 MET B 1 CB - CA - C ANGL. DEV. = 14.1 DEGREES REMARK 500 LEU B 4 CB - CA - C ANGL. DEV. = -18.2 DEGREES REMARK 500 LEU B 4 N - CA - C ANGL. DEV. = 29.8 DEGREES REMARK 500 MET B 12 CA - CB - CG ANGL. DEV. = 10.5 DEGREES REMARK 500 MET B 12 CB - CG - SD ANGL. DEV. = -30.3 DEGREES REMARK 500 ASP B 29 CB - CG - OD2 ANGL. DEV. = 7.1 DEGREES REMARK 500 ASN B 56 N - CA - C ANGL. DEV. = -23.6 DEGREES REMARK 500 TYR B 63 N - CA - C ANGL. DEV. = -18.6 DEGREES REMARK 500 GLN B 64 CB - CA - C ANGL. DEV. = -12.8 DEGREES REMARK 500 ASP B 66 CB - CA - C ANGL. DEV. = -15.4 DEGREES REMARK 500 VAL B 67 O - C - N ANGL. DEV. = -9.6 DEGREES REMARK 500 ILE B 80 CB - CA - C ANGL. DEV. = -19.4 DEGREES REMARK 500 SER B 122 N - CA - C ANGL. DEV. = 16.5 DEGREES REMARK 500 ILE B 142 CG1 - CB - CG2 ANGL. DEV. = -13.9 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 60 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 2 -132.04 -155.02 REMARK 500 ASN A 3 -112.07 -80.32 REMARK 500 GLU A 5 -179.68 -58.15 REMARK 500 ASN A 6 1.34 100.02 REMARK 500 ASN A 16 -155.79 -139.82 REMARK 500 LYS A 17 3.82 -56.84 REMARK 500 ARG A 18 15.63 -147.89 REMARK 500 LEU A 31 11.69 -68.64 REMARK 500 TYR A 39 134.93 -176.04 REMARK 500 ARG A 40 -60.14 -106.60 REMARK 500 LEU A 52 106.87 47.07 REMARK 500 GLN A 54 -167.59 -78.61 REMARK 500 GLU A 59 -59.47 -141.10 REMARK 500 HIS A 61 63.85 69.36 REMARK 500 ASP A 83 -71.24 -74.83 REMARK 500 ALA A 165 82.07 -69.45 REMARK 500 ARG A 214 10.89 -153.38 REMARK 500 PRO A 216 -60.37 -22.94 REMARK 500 ASP A 249 12.72 -144.96 REMARK 500 HIS A 253 6.75 -64.01 REMARK 500 ALA A 254 48.42 -141.34 REMARK 500 ASN B 3 54.85 95.84 REMARK 500 LEU B 4 -59.82 -138.32 REMARK 500 ASN B 6 -12.20 84.21 REMARK 500 ASN B 16 -159.49 -148.55 REMARK 500 ARG B 43 -26.53 -144.69 REMARK 500 LYS B 50 -19.63 -46.61 REMARK 500 LEU B 52 -155.05 152.82 REMARK 500 GLU B 53 123.96 -19.65 REMARK 500 GLN B 54 19.33 102.06 REMARK 500 LEU B 55 -5.87 72.59 REMARK 500 PRO B 58 -169.36 -129.96 REMARK 500 SER B 69 83.68 -163.19 REMARK 500 SER B 121 55.81 -159.40 REMARK 500 SER B 124 22.27 -141.03 REMARK 500 VAL B 128 -28.74 -33.05 REMARK 500 LYS B 134 28.19 -78.03 REMARK 500 ALA B 165 14.32 -164.57 REMARK 500 LEU B 167 112.65 177.40 REMARK 500 GLU B 168 45.80 102.31 REMARK 500 ALA B 169 -7.01 174.69 REMARK 500 LEU B 176 -33.99 -35.48 REMARK 500 GLU B 212 -31.40 -34.62 REMARK 500 HIS B 253 -9.40 -54.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU A 2 ASN A 3 -128.28 REMARK 500 ASN A 6 LYS A 7 -145.39 REMARK 500 ILE A 11 MET A 12 -145.37 REMARK 500 THR A 38 TYR A 39 -128.06 REMARK 500 GLU A 42 ARG A 43 149.34 REMARK 500 GLU A 49 LYS A 50 130.84 REMARK 500 LYS A 50 LEU A 51 -56.96 REMARK 500 LEU A 51 LEU A 52 -108.89 REMARK 500 GLN A 57 PRO A 58 146.04 REMARK 500 GLU A 59 ALA A 60 54.77 REMARK 500 ALA A 60 HIS A 61 -122.50 REMARK 500 ASN A 86 ILE A 87 -145.14 REMARK 500 ILE A 127 VAL A 128 135.01 REMARK 500 THR A 146 TYR A 147 -140.43 REMARK 500 LYS A 164 ALA A 165 137.69 REMARK 500 ALA A 165 SER A 166 109.28 REMARK 500 SER A 166 LEU A 167 129.12 REMARK 500 VAL A 185 ASN A 186 -149.06 REMARK 500 MET B 1 LEU B 2 -109.27 REMARK 500 LEU B 2 ASN B 3 146.47 REMARK 500 ASN B 3 LEU B 4 -147.25 REMARK 500 VAL B 24 ALA B 25 146.33 REMARK 500 LYS B 34 LEU B 35 -133.75 REMARK 500 THR B 38 TYR B 39 -144.88 REMARK 500 LYS B 41 GLU B 42 -147.12 REMARK 500 GLU B 42 ARG B 43 -122.13 REMARK 500 LEU B 51 LEU B 52 -140.82 REMARK 500 LEU B 52 GLU B 53 -110.93 REMARK 500 GLU B 53 GLN B 54 -81.99 REMARK 500 GLN B 54 LEU B 55 101.27 REMARK 500 VAL B 67 GLN B 68 131.39 REMARK 500 SER B 121 SER B 122 -88.38 REMARK 500 SER B 122 TYR B 123 139.29 REMARK 500 ALA B 165 SER B 166 140.56 REMARK 500 LEU B 167 GLU B 168 39.26 REMARK 500 ALA B 169 ASN B 170 142.30 REMARK 500 LEU B 176 ASP B 177 -138.89 REMARK 500 ILE B 193 ARG B 194 129.74 REMARK 500 LEU B 208 LYS B 209 -149.50 REMARK 500 VAL B 221 ASP B 222 142.48 REMARK 500 ALA B 254 ILE B 255 -138.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLU A 71 -10.31 REMARK 500 VAL B 224 -13.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3GNS RELATED DB: PDB REMARK 900 ANOTHER SPACE GROUP DBREF 3GNT A 1 256 UNP Q6GI75 Q6GI75_STAAR 1 256 DBREF 3GNT B 1 256 UNP Q6GI75 Q6GI75_STAAR 1 256 SEQRES 1 A 256 MET LEU ASN LEU GLU ASN LYS THR TYR VAL ILE MET GLY SEQRES 2 A 256 ILE ALA ASN LYS ARG SER ILE ALA PHE GLY VAL ALA LYS SEQRES 3 A 256 VAL LEU ASP GLN LEU GLY ALA LYS LEU VAL PHE THR TYR SEQRES 4 A 256 ARG LYS GLU ARG SER ARG LYS GLU LEU GLU LYS LEU LEU SEQRES 5 A 256 GLU GLN LEU ASN GLN PRO GLU ALA HIS LEU TYR GLN ILE SEQRES 6 A 256 ASP VAL GLN SER ASP GLU GLU VAL ILE ASN GLY PHE GLU SEQRES 7 A 256 GLN ILE GLY LYS ASP VAL GLY ASN ILE ASP GLY VAL TYR SEQRES 8 A 256 HIS SER ILE ALA PHE ALA ASN MET GLU ASP LEU ARG GLY SEQRES 9 A 256 ARG PHE SER GLU THR SER ARG GLU GLY PHE LEU LEU ALA SEQRES 10 A 256 GLN ASP ILE SER SER TYR SER LEU THR ILE VAL ALA HIS SEQRES 11 A 256 GLU ALA LYS LYS LEU MET PRO GLU GLY GLY SER ILE VAL SEQRES 12 A 256 ALA THR THR TYR LEU GLY GLY GLU PHE ALA VAL GLN ASN SEQRES 13 A 256 TYR ASN VAL MET GLY VAL ALA LYS ALA SER LEU GLU ALA SEQRES 14 A 256 ASN VAL LYS TYR LEU ALA LEU ASP LEU GLY PRO ASP ASN SEQRES 15 A 256 ILE ARG VAL ASN ALA ILE SER ALA GLY PRO ILE ARG THR SEQRES 16 A 256 LEU SER ALA LYS GLY VAL GLY GLY PHE ASN THR ILE LEU SEQRES 17 A 256 LYS GLU ILE GLU GLU ARG ALA PRO LEU LYS ARG ASN VAL SEQRES 18 A 256 ASP GLN VAL GLU VAL GLY LYS THR ALA ALA TYR LEU LEU SEQRES 19 A 256 SER ASP LEU SER SER GLY VAL THR GLY GLU ASN ILE HIS SEQRES 20 A 256 VAL ASP SER GLY PHE HIS ALA ILE LYS SEQRES 1 B 256 MET LEU ASN LEU GLU ASN LYS THR TYR VAL ILE MET GLY SEQRES 2 B 256 ILE ALA ASN LYS ARG SER ILE ALA PHE GLY VAL ALA LYS SEQRES 3 B 256 VAL LEU ASP GLN LEU GLY ALA LYS LEU VAL PHE THR TYR SEQRES 4 B 256 ARG LYS GLU ARG SER ARG LYS GLU LEU GLU LYS LEU LEU SEQRES 5 B 256 GLU GLN LEU ASN GLN PRO GLU ALA HIS LEU TYR GLN ILE SEQRES 6 B 256 ASP VAL GLN SER ASP GLU GLU VAL ILE ASN GLY PHE GLU SEQRES 7 B 256 GLN ILE GLY LYS ASP VAL GLY ASN ILE ASP GLY VAL TYR SEQRES 8 B 256 HIS SER ILE ALA PHE ALA ASN MET GLU ASP LEU ARG GLY SEQRES 9 B 256 ARG PHE SER GLU THR SER ARG GLU GLY PHE LEU LEU ALA SEQRES 10 B 256 GLN ASP ILE SER SER TYR SER LEU THR ILE VAL ALA HIS SEQRES 11 B 256 GLU ALA LYS LYS LEU MET PRO GLU GLY GLY SER ILE VAL SEQRES 12 B 256 ALA THR THR TYR LEU GLY GLY GLU PHE ALA VAL GLN ASN SEQRES 13 B 256 TYR ASN VAL MET GLY VAL ALA LYS ALA SER LEU GLU ALA SEQRES 14 B 256 ASN VAL LYS TYR LEU ALA LEU ASP LEU GLY PRO ASP ASN SEQRES 15 B 256 ILE ARG VAL ASN ALA ILE SER ALA GLY PRO ILE ARG THR SEQRES 16 B 256 LEU SER ALA LYS GLY VAL GLY GLY PHE ASN THR ILE LEU SEQRES 17 B 256 LYS GLU ILE GLU GLU ARG ALA PRO LEU LYS ARG ASN VAL SEQRES 18 B 256 ASP GLN VAL GLU VAL GLY LYS THR ALA ALA TYR LEU LEU SEQRES 19 B 256 SER ASP LEU SER SER GLY VAL THR GLY GLU ASN ILE HIS SEQRES 20 B 256 VAL ASP SER GLY PHE HIS ALA ILE LYS HELIX 1 1 SER A 19 LEU A 31 1 13 HELIX 2 2 GLU A 42 GLU A 49 1 8 HELIX 3 3 SER A 69 VAL A 84 1 16 HELIX 4 4 SER A 122 LYS A 133 1 12 HELIX 5 5 LYS A 134 MET A 136 5 3 HELIX 6 6 SER A 166 LEU A 178 1 13 HELIX 7 7 GLY A 179 ASP A 181 5 3 HELIX 8 8 ASN A 205 ALA A 215 1 11 HELIX 9 9 ASP A 222 SER A 235 1 14 HELIX 10 10 ASP A 236 SER A 239 5 4 HELIX 11 11 SER B 19 LEU B 31 1 13 HELIX 12 12 ARG B 43 LEU B 51 1 9 HELIX 13 13 SER B 69 GLY B 85 1 17 HELIX 14 14 SER B 124 LYS B 133 1 10 HELIX 15 15 ALA B 169 GLY B 179 1 11 HELIX 16 16 GLU B 210 ALA B 215 1 6 HELIX 17 17 ASP B 222 SER B 235 1 14 HELIX 18 18 ASP B 236 SER B 239 5 4 HELIX 19 19 GLY B 251 ILE B 255 5 5 SHEET 1 A 7 LEU A 62 GLN A 64 0 SHEET 2 A 7 LYS A 34 TYR A 39 1 N PHE A 37 O TYR A 63 SHEET 3 A 7 THR A 8 MET A 12 1 N TYR A 9 O LYS A 34 SHEET 4 A 7 GLY A 89 SER A 93 1 O TYR A 91 N VAL A 10 SHEET 5 A 7 GLY A 140 THR A 146 1 O VAL A 143 N HIS A 92 SHEET 6 A 7 ILE A 183 ALA A 190 1 O ARG A 184 N GLY A 140 SHEET 7 A 7 ASN A 245 VAL A 248 1 O ILE A 246 N SER A 189 SHEET 1 B 6 LYS B 34 PHE B 37 0 SHEET 2 B 6 THR B 8 ILE B 11 1 N TYR B 9 O VAL B 36 SHEET 3 B 6 GLY B 89 HIS B 92 1 N TYR B 91 O VAL B 10 SHEET 4 B 6 GLY B 140 THR B 146 1 O VAL B 143 N HIS B 92 SHEET 5 B 6 ILE B 183 ALA B 190 1 O ARG B 184 N GLY B 140 SHEET 6 B 6 ASN B 245 VAL B 248 1 O ILE B 246 N ALA B 187 CISPEP 1 PRO A 58 GLU A 59 0 -24.33 CISPEP 2 PRO B 58 GLU B 59 0 -24.26 CISPEP 3 GLU B 59 ALA B 60 0 22.68 CISPEP 4 ILE B 120 SER B 121 0 -27.92 CISPEP 5 LYS B 164 ALA B 165 0 -25.84 CRYST1 115.099 74.462 70.609 90.00 119.35 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008688 0.000000 0.004886 0.00000 SCALE2 0.000000 0.013430 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016248 0.00000