data_3GNY # _entry.id 3GNY # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.378 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3GNY pdb_00003gny 10.2210/pdb3gny/pdb RCSB RCSB052097 ? ? WWPDB D_1000052097 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1DFN 'Crystal structure of human alpha-defensin 3 (HNP3)' unspecified PDB 2PM1 'Derivative of human alpha-defensin 1' unspecified PDB 2PM4 'Human alpha-defensin 1 (multiple Arg to Lys mutant)' unspecified PDB 2PM5 'Human alpha-defensin 1 derivative' unspecified PDB 3GO0 'Crystal structure of D-enantiomer of human alpha-defensin 1 (D-HNP1)' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3GNY _pdbx_database_status.recvd_initial_deposition_date 2009-03-18 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Pazgier, M.' 1 'Lu, W.-Y.' 2 # _citation.id primary _citation.title 'Through the looking glass, mechanistic insights from enantiomeric human defensins.' _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 284 _citation.page_first 29180 _citation.page_last 29192 _citation.year 2009 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 19640840 _citation.pdbx_database_id_DOI 10.1074/jbc.M109.018085 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Wei, G.' 1 ? primary 'de Leeuw, E.' 2 ? primary 'Pazgier, M.' 3 ? primary 'Yuan, W.' 4 ? primary 'Zou, G.' 5 ? primary 'Wang, J.' 6 ? primary 'Ericksen, B.' 7 ? primary 'Lu, W.Y.' 8 ? primary 'Lehrer, R.I.' 9 ? primary 'Lu, W.' 10 ? # _cell.entry_id 3GNY _cell.length_a 45.466 _cell.length_b 31.339 _cell.length_c 40.205 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3GNY _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'Neutrophil defensin 1' 3452.111 2 ? ? ? ? 2 non-polymer syn 'CHLORIDE ION' 35.453 1 ? ? ? ? 3 non-polymer syn GLYCEROL 92.094 2 ? ? ? ? 4 water nat water 18.015 60 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'HNP-1, HP-1, HP1, Defensin, alpha 1, HP 1-56, Neutrophil defensin 2, HNP-2, HP-2, HP2' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ACYCRIPACIAGERRYGTCIYQGRLWAFCC _entity_poly.pdbx_seq_one_letter_code_can ACYCRIPACIAGERRYGTCIYQGRLWAFCC _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 CYS n 1 3 TYR n 1 4 CYS n 1 5 ARG n 1 6 ILE n 1 7 PRO n 1 8 ALA n 1 9 CYS n 1 10 ILE n 1 11 ALA n 1 12 GLY n 1 13 GLU n 1 14 ARG n 1 15 ARG n 1 16 TYR n 1 17 GLY n 1 18 THR n 1 19 CYS n 1 20 ILE n 1 21 TYR n 1 22 GLN n 1 23 GLY n 1 24 ARG n 1 25 LEU n 1 26 TRP n 1 27 ALA n 1 28 PHE n 1 29 CYS n 1 30 CYS n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name Human _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code DEF1_HUMAN _struct_ref.pdbx_db_accession P59665 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ACYCRIPACIAGERRYGTCIYQGRLWAFCC _struct_ref.pdbx_align_begin 65 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3GNY A 1 ? 30 ? P59665 65 ? 94 ? 1 30 2 1 3GNY B 1 ? 30 ? P59665 65 ? 94 ? 1 30 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 # _exptl.entry_id 3GNY _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.07 _exptl_crystal.density_percent_sol 40.70 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_details '0.1 M imidazole, pH 6.5, 1.0 M sodium acetate trihydrate, VAPOR DIFFUSION, HANGING DROP, temperature 298K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IV' _diffrn_detector.pdbx_collection_date 2008-10-14 _diffrn_detector.details confocal # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.54 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU MICROMAX-007' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.54 # _reflns.entry_id 3GNY _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 45.466 _reflns.d_resolution_high 1.56 _reflns.number_obs 8119 _reflns.number_all 8584 _reflns.percent_possible_obs 94.2 _reflns.pdbx_Rmerge_I_obs 0.070 _reflns.pdbx_Rsym_value 0.108 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 7.0 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_netI_over_sigmaI ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.56 _reflns_shell.d_res_low 1.59 _reflns_shell.percent_possible_all 85.9 _reflns_shell.Rmerge_I_obs 0.152 _reflns_shell.pdbx_Rsym_value 0.152 _reflns_shell.meanI_over_sigI_obs 13.9 _reflns_shell.pdbx_redundancy 6.9 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 719 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3GNY _refine.ls_number_reflns_obs 7748 _refine.ls_number_reflns_all 8146 _refine.pdbx_ls_sigma_I 1 _refine.pdbx_ls_sigma_F 2 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20.00 _refine.ls_d_res_high 1.56 _refine.ls_percent_reflns_obs 94.83 _refine.ls_R_factor_obs 0.17246 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.17133 _refine.ls_R_factor_R_free 0.19498 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.7 _refine.ls_number_reflns_R_free 379 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.970 _refine.correlation_coeff_Fo_to_Fc_free 0.953 _refine.B_iso_mean 13.406 _refine.aniso_B[1][1] 0.59 _refine.aniso_B[2][2] 0.38 _refine.aniso_B[3][3] -0.98 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 'PDB entry 1DFN' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.087 _refine.pdbx_overall_ESU_R_Free 0.084 _refine.overall_SU_ML 0.047 _refine.overall_SU_B 2.816 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 476 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 13 _refine_hist.number_atoms_solvent 60 _refine_hist.number_atoms_total 549 _refine_hist.d_res_high 1.56 _refine_hist.d_res_low 20.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.011 0.022 ? 504 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.423 1.951 ? 680 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 7.717 5.000 ? 58 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 22.375 18.182 ? 22 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 10.824 15.000 ? 72 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 18.063 15.000 ? 8 'X-RAY DIFFRACTION' ? r_chiral_restr 0.091 0.200 ? 64 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.006 0.021 ? 386 'X-RAY DIFFRACTION' ? r_mcbond_it 0.688 1.500 ? 296 'X-RAY DIFFRACTION' ? r_mcangle_it 1.102 2.000 ? 466 'X-RAY DIFFRACTION' ? r_scbond_it 1.733 3.000 ? 208 'X-RAY DIFFRACTION' ? r_scangle_it 2.646 4.500 ? 214 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_restr_ncs.dom_id _refine_ls_restr_ncs.pdbx_auth_asym_id _refine_ls_restr_ncs.pdbx_number _refine_ls_restr_ncs.rms_dev_position _refine_ls_restr_ncs.weight_position _refine_ls_restr_ncs.pdbx_type _refine_ls_restr_ncs.pdbx_ens_id _refine_ls_restr_ncs.pdbx_ordinal _refine_ls_restr_ncs.pdbx_refine_id _refine_ls_restr_ncs.ncs_model_details _refine_ls_restr_ncs.rms_dev_B_iso _refine_ls_restr_ncs.weight_B_iso _refine_ls_restr_ncs.pdbx_asym_id _refine_ls_restr_ncs.pdbx_rms _refine_ls_restr_ncs.pdbx_weight 1 A 238 0.59 5.00 'loose positional' 1 1 'X-RAY DIFFRACTION' ? ? ? ? ? ? 1 A 238 1.95 10.00 'loose thermal' 1 2 'X-RAY DIFFRACTION' ? ? ? ? ? ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.56 _refine_ls_shell.d_res_low 1.604 _refine_ls_shell.number_reflns_R_work 542 _refine_ls_shell.R_factor_R_work 0.194 _refine_ls_shell.percent_reflns_obs 91.63 _refine_ls_shell.R_factor_R_free 0.266 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 27 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _struct_ncs_dom.id _struct_ncs_dom.details _struct_ncs_dom.pdbx_ens_id 1 A 1 2 B 1 # _struct_ncs_ens.id 1 _struct_ncs_ens.details ? # _struct.entry_id 3GNY _struct.title 'Crystal structure of human alpha-defensin 1 (HNP1)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3GNY _struct_keywords.pdbx_keywords 'ANTIMICROBIAL PROTEIN' _struct_keywords.text ;antimicrobial peptide, human alpha defensin 1, human neutrophil peptide 1, HNP1, Antibiotic, Antimicrobial, Antiviral defense, Defensin, Disulfide bond, Fungicide, Phosphoprotein, Secreted, ANTIMICROBIAL PROTEIN ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 3 ? F N N 4 ? G N N 4 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 2 SG ? ? ? 1_555 A CYS 30 SG ? ? A CYS 2 A CYS 30 1_555 ? ? ? ? ? ? ? 2.048 ? ? disulf2 disulf ? ? A CYS 4 SG ? ? ? 1_555 A CYS 19 SG ? ? A CYS 4 A CYS 19 1_555 ? ? ? ? ? ? ? 2.014 ? ? disulf3 disulf ? ? A CYS 9 SG ? ? ? 1_555 A CYS 29 SG ? ? A CYS 9 A CYS 29 1_555 ? ? ? ? ? ? ? 2.041 ? ? disulf4 disulf ? ? B CYS 2 SG ? ? ? 1_555 B CYS 30 SG ? ? B CYS 2 B CYS 30 1_555 ? ? ? ? ? ? ? 2.049 ? ? disulf5 disulf ? ? B CYS 4 SG ? ? ? 1_555 B CYS 19 SG ? ? B CYS 4 B CYS 19 1_555 ? ? ? ? ? ? ? 2.027 ? ? disulf6 disulf ? ? B CYS 9 SG ? ? ? 1_555 B CYS 29 SG ? ? B CYS 9 B CYS 29 1_555 ? ? ? ? ? ? ? 2.016 ? ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 ILE 6 A . ? ILE 6 A PRO 7 A ? PRO 7 A 1 7.39 2 ILE 6 B . ? ILE 6 B PRO 7 B ? PRO 7 B 1 1.47 # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 6 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TYR A 3 ? ARG A 5 ? TYR A 3 ARG A 5 A 2 ARG A 24 ? CYS A 30 ? ARG A 24 CYS A 30 A 3 ARG A 14 ? TYR A 21 ? ARG A 14 TYR A 21 A 4 ARG B 14 ? TYR B 21 ? ARG B 14 TYR B 21 A 5 ARG B 24 ? CYS B 30 ? ARG B 24 CYS B 30 A 6 TYR B 3 ? ARG B 5 ? TYR B 3 ARG B 5 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N TYR A 3 ? N TYR A 3 O CYS A 29 ? O CYS A 29 A 2 3 O PHE A 28 ? O PHE A 28 N TYR A 16 ? N TYR A 16 A 3 4 N THR A 18 ? N THR A 18 O ILE B 20 ? O ILE B 20 A 4 5 N TYR B 16 ? N TYR B 16 O PHE B 28 ? O PHE B 28 A 5 6 O CYS B 29 ? O CYS B 29 N TYR B 3 ? N TYR B 3 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A CL 31 ? 2 'BINDING SITE FOR RESIDUE CL A 31' AC2 Software A GOL 32 ? 4 'BINDING SITE FOR RESIDUE GOL A 32' AC3 Software B GOL 31 ? 6 'BINDING SITE FOR RESIDUE GOL B 31' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 2 ARG B 14 ? ARG B 14 . ? 3_545 ? 2 AC1 2 HOH G . ? HOH B 51 . ? 3_545 ? 3 AC2 4 PRO A 7 ? PRO A 7 . ? 1_555 ? 4 AC2 4 ARG A 15 ? ARG A 15 . ? 1_555 ? 5 AC2 4 LEU A 25 ? LEU A 25 . ? 1_555 ? 6 AC2 4 HOH F . ? HOH A 57 . ? 1_555 ? 7 AC3 6 PRO B 7 ? PRO B 7 . ? 1_555 ? 8 AC3 6 ARG B 15 ? ARG B 15 . ? 1_555 ? 9 AC3 6 LEU B 25 ? LEU B 25 . ? 1_555 ? 10 AC3 6 TRP B 26 ? TRP B 26 . ? 1_555 ? 11 AC3 6 ALA B 27 ? ALA B 27 . ? 1_555 ? 12 AC3 6 HOH G . ? HOH B 63 . ? 1_555 ? # _database_PDB_matrix.entry_id 3GNY _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3GNY _atom_sites.fract_transf_matrix[1][1] 0.021994 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.031909 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.024873 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 1 1 ALA ALA A . n A 1 2 CYS 2 2 2 CYS CYS A . n A 1 3 TYR 3 3 3 TYR TYR A . n A 1 4 CYS 4 4 4 CYS CYS A . n A 1 5 ARG 5 5 5 ARG ARG A . n A 1 6 ILE 6 6 6 ILE ILE A . n A 1 7 PRO 7 7 7 PRO PRO A . n A 1 8 ALA 8 8 8 ALA ALA A . n A 1 9 CYS 9 9 9 CYS CYS A . n A 1 10 ILE 10 10 10 ILE ILE A . n A 1 11 ALA 11 11 11 ALA ALA A . n A 1 12 GLY 12 12 12 GLY GLY A . n A 1 13 GLU 13 13 13 GLU GLU A . n A 1 14 ARG 14 14 14 ARG ARG A . n A 1 15 ARG 15 15 15 ARG ARG A . n A 1 16 TYR 16 16 16 TYR TYR A . n A 1 17 GLY 17 17 17 GLY GLY A . n A 1 18 THR 18 18 18 THR THR A . n A 1 19 CYS 19 19 19 CYS CYS A . n A 1 20 ILE 20 20 20 ILE ILE A . n A 1 21 TYR 21 21 21 TYR TYR A . n A 1 22 GLN 22 22 22 GLN GLN A . n A 1 23 GLY 23 23 23 GLY GLY A . n A 1 24 ARG 24 24 24 ARG ARG A . n A 1 25 LEU 25 25 25 LEU LEU A . n A 1 26 TRP 26 26 26 TRP TRP A . n A 1 27 ALA 27 27 27 ALA ALA A . n A 1 28 PHE 28 28 28 PHE PHE A . n A 1 29 CYS 29 29 29 CYS CYS A . n A 1 30 CYS 30 30 30 CYS CYS A . n B 1 1 ALA 1 1 1 ALA ALA B . n B 1 2 CYS 2 2 2 CYS CYS B . n B 1 3 TYR 3 3 3 TYR TYR B . n B 1 4 CYS 4 4 4 CYS CYS B . n B 1 5 ARG 5 5 5 ARG ARG B . n B 1 6 ILE 6 6 6 ILE ILE B . n B 1 7 PRO 7 7 7 PRO PRO B . n B 1 8 ALA 8 8 8 ALA ALA B . n B 1 9 CYS 9 9 9 CYS CYS B . n B 1 10 ILE 10 10 10 ILE ILE B . n B 1 11 ALA 11 11 11 ALA ALA B . n B 1 12 GLY 12 12 12 GLY GLY B . n B 1 13 GLU 13 13 13 GLU GLU B . n B 1 14 ARG 14 14 14 ARG ARG B . n B 1 15 ARG 15 15 15 ARG ARG B . n B 1 16 TYR 16 16 16 TYR TYR B . n B 1 17 GLY 17 17 17 GLY GLY B . n B 1 18 THR 18 18 18 THR THR B . n B 1 19 CYS 19 19 19 CYS CYS B . n B 1 20 ILE 20 20 20 ILE ILE B . n B 1 21 TYR 21 21 21 TYR TYR B . n B 1 22 GLN 22 22 22 GLN GLN B . n B 1 23 GLY 23 23 23 GLY GLY B . n B 1 24 ARG 24 24 24 ARG ARG B . n B 1 25 LEU 25 25 25 LEU LEU B . n B 1 26 TRP 26 26 26 TRP TRP B . n B 1 27 ALA 27 27 27 ALA ALA B . n B 1 28 PHE 28 28 28 PHE PHE B . n B 1 29 CYS 29 29 29 CYS CYS B . n B 1 30 CYS 30 30 30 CYS CYS B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CL 1 31 1 CL CL A . D 3 GOL 1 32 1 GOL GOL A . E 3 GOL 1 31 2 GOL GOL B . F 4 HOH 1 33 2 HOH HOH A . F 4 HOH 2 34 5 HOH HOH A . F 4 HOH 3 35 35 HOH HOH A . F 4 HOH 4 36 6 HOH HOH A . F 4 HOH 5 37 7 HOH HOH A . F 4 HOH 6 38 8 HOH HOH A . F 4 HOH 7 39 11 HOH HOH A . F 4 HOH 8 40 12 HOH HOH A . F 4 HOH 9 41 41 HOH HOH A . F 4 HOH 10 42 15 HOH HOH A . F 4 HOH 11 43 16 HOH HOH A . F 4 HOH 12 44 44 HOH HOH A . F 4 HOH 13 45 20 HOH HOH A . F 4 HOH 14 46 46 HOH HOH A . F 4 HOH 15 47 21 HOH HOH A . F 4 HOH 16 48 24 HOH HOH A . F 4 HOH 17 49 49 HOH HOH A . F 4 HOH 18 50 50 HOH HOH A . F 4 HOH 19 51 51 HOH HOH A . F 4 HOH 20 52 52 HOH HOH A . F 4 HOH 21 53 25 HOH HOH A . F 4 HOH 22 54 54 HOH HOH A . F 4 HOH 23 55 26 HOH HOH A . F 4 HOH 24 56 28 HOH HOH A . F 4 HOH 25 57 29 HOH HOH A . F 4 HOH 26 58 58 HOH HOH A . F 4 HOH 27 59 59 HOH HOH A . G 4 HOH 1 32 32 HOH HOH B . G 4 HOH 2 33 33 HOH HOH B . G 4 HOH 3 34 1 HOH HOH B . G 4 HOH 4 35 3 HOH HOH B . G 4 HOH 5 36 36 HOH HOH B . G 4 HOH 6 37 37 HOH HOH B . G 4 HOH 7 38 38 HOH HOH B . G 4 HOH 8 39 39 HOH HOH B . G 4 HOH 9 40 40 HOH HOH B . G 4 HOH 10 41 4 HOH HOH B . G 4 HOH 11 42 42 HOH HOH B . G 4 HOH 12 43 43 HOH HOH B . G 4 HOH 13 44 9 HOH HOH B . G 4 HOH 14 45 45 HOH HOH B . G 4 HOH 15 46 10 HOH HOH B . G 4 HOH 16 47 47 HOH HOH B . G 4 HOH 17 48 48 HOH HOH B . G 4 HOH 18 49 13 HOH HOH B . G 4 HOH 19 50 14 HOH HOH B . G 4 HOH 20 51 17 HOH HOH B . G 4 HOH 21 52 18 HOH HOH B . G 4 HOH 22 53 53 HOH HOH B . G 4 HOH 23 54 19 HOH HOH B . G 4 HOH 24 55 55 HOH HOH B . G 4 HOH 25 56 56 HOH HOH B . G 4 HOH 26 57 57 HOH HOH B . G 4 HOH 27 58 22 HOH HOH B . G 4 HOH 28 59 23 HOH HOH B . G 4 HOH 29 60 60 HOH HOH B . G 4 HOH 30 61 61 HOH HOH B . G 4 HOH 31 62 27 HOH HOH B . G 4 HOH 32 63 30 HOH HOH B . G 4 HOH 33 64 31 HOH HOH B . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA tetrameric 4 2 author_and_software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1,2 A,B,C,D,E,F,G 2 1 A,B,C,D,E,F,G # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3400 ? 1 MORE -37 ? 1 'SSA (A^2)' 7580 ? 2 'ABSA (A^2)' 1310 ? 2 MORE -13 ? 2 'SSA (A^2)' 4180 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_565 -x,-y+1,z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 31.3390000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-07-28 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2018-01-24 4 'Structure model' 1 3 2018-02-07 5 'Structure model' 1 4 2023-09-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Structure summary' 4 4 'Structure model' 'Source and taxonomy' 5 5 'Structure model' 'Data collection' 6 5 'Structure model' 'Database references' 7 5 'Structure model' 'Derived calculations' 8 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' audit_author 2 4 'Structure model' pdbx_entity_src_syn 3 5 'Structure model' chem_comp_atom 4 5 'Structure model' chem_comp_bond 5 5 'Structure model' database_2 6 5 'Structure model' pdbx_initial_refinement_model 7 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_audit_author.name' 2 4 'Structure model' '_pdbx_entity_src_syn.details' 3 4 'Structure model' '_pdbx_entity_src_syn.ncbi_taxonomy_id' 4 4 'Structure model' '_pdbx_entity_src_syn.organism_common_name' 5 4 'Structure model' '_pdbx_entity_src_syn.organism_scientific' 6 5 'Structure model' '_database_2.pdbx_DOI' 7 5 'Structure model' '_database_2.pdbx_database_accession' 8 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 9 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 10 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 8.0836 7.4056 6.0291 0.0844 0.0795 0.0781 0.0065 0.0006 -0.0007 1.3005 4.6970 2.0005 -1.0119 -0.3125 0.2226 -0.1011 0.0667 0.0344 -0.0412 -0.0416 -0.0161 0.0810 0.1639 0.0559 'X-RAY DIFFRACTION' 2 ? refined 11.6306 17.0670 14.1975 0.0639 0.1058 0.0815 0.0169 -0.0045 -0.0091 3.6305 3.5465 2.8542 2.6039 0.5567 -0.0811 -0.0091 0.0551 -0.0460 -0.0177 -0.1505 -0.2080 0.1158 -0.0111 0.2582 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 1 A 30 ? . . . . ? 'X-RAY DIFFRACTION' 2 2 B 1 B 30 ? . . . . ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 PHASER phasing . ? 2 REFMAC refinement 5.5.0070 ? 3 DENZO 'data reduction' . ? 4 SCALEPACK 'data scaling' . ? 5 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 CL CL CL N N 41 CYS N N N N 42 CYS CA C N R 43 CYS C C N N 44 CYS O O N N 45 CYS CB C N N 46 CYS SG S N N 47 CYS OXT O N N 48 CYS H H N N 49 CYS H2 H N N 50 CYS HA H N N 51 CYS HB2 H N N 52 CYS HB3 H N N 53 CYS HG H N N 54 CYS HXT H N N 55 GLN N N N N 56 GLN CA C N S 57 GLN C C N N 58 GLN O O N N 59 GLN CB C N N 60 GLN CG C N N 61 GLN CD C N N 62 GLN OE1 O N N 63 GLN NE2 N N N 64 GLN OXT O N N 65 GLN H H N N 66 GLN H2 H N N 67 GLN HA H N N 68 GLN HB2 H N N 69 GLN HB3 H N N 70 GLN HG2 H N N 71 GLN HG3 H N N 72 GLN HE21 H N N 73 GLN HE22 H N N 74 GLN HXT H N N 75 GLU N N N N 76 GLU CA C N S 77 GLU C C N N 78 GLU O O N N 79 GLU CB C N N 80 GLU CG C N N 81 GLU CD C N N 82 GLU OE1 O N N 83 GLU OE2 O N N 84 GLU OXT O N N 85 GLU H H N N 86 GLU H2 H N N 87 GLU HA H N N 88 GLU HB2 H N N 89 GLU HB3 H N N 90 GLU HG2 H N N 91 GLU HG3 H N N 92 GLU HE2 H N N 93 GLU HXT H N N 94 GLY N N N N 95 GLY CA C N N 96 GLY C C N N 97 GLY O O N N 98 GLY OXT O N N 99 GLY H H N N 100 GLY H2 H N N 101 GLY HA2 H N N 102 GLY HA3 H N N 103 GLY HXT H N N 104 GOL C1 C N N 105 GOL O1 O N N 106 GOL C2 C N N 107 GOL O2 O N N 108 GOL C3 C N N 109 GOL O3 O N N 110 GOL H11 H N N 111 GOL H12 H N N 112 GOL HO1 H N N 113 GOL H2 H N N 114 GOL HO2 H N N 115 GOL H31 H N N 116 GOL H32 H N N 117 GOL HO3 H N N 118 HOH O O N N 119 HOH H1 H N N 120 HOH H2 H N N 121 ILE N N N N 122 ILE CA C N S 123 ILE C C N N 124 ILE O O N N 125 ILE CB C N S 126 ILE CG1 C N N 127 ILE CG2 C N N 128 ILE CD1 C N N 129 ILE OXT O N N 130 ILE H H N N 131 ILE H2 H N N 132 ILE HA H N N 133 ILE HB H N N 134 ILE HG12 H N N 135 ILE HG13 H N N 136 ILE HG21 H N N 137 ILE HG22 H N N 138 ILE HG23 H N N 139 ILE HD11 H N N 140 ILE HD12 H N N 141 ILE HD13 H N N 142 ILE HXT H N N 143 LEU N N N N 144 LEU CA C N S 145 LEU C C N N 146 LEU O O N N 147 LEU CB C N N 148 LEU CG C N N 149 LEU CD1 C N N 150 LEU CD2 C N N 151 LEU OXT O N N 152 LEU H H N N 153 LEU H2 H N N 154 LEU HA H N N 155 LEU HB2 H N N 156 LEU HB3 H N N 157 LEU HG H N N 158 LEU HD11 H N N 159 LEU HD12 H N N 160 LEU HD13 H N N 161 LEU HD21 H N N 162 LEU HD22 H N N 163 LEU HD23 H N N 164 LEU HXT H N N 165 PHE N N N N 166 PHE CA C N S 167 PHE C C N N 168 PHE O O N N 169 PHE CB C N N 170 PHE CG C Y N 171 PHE CD1 C Y N 172 PHE CD2 C Y N 173 PHE CE1 C Y N 174 PHE CE2 C Y N 175 PHE CZ C Y N 176 PHE OXT O N N 177 PHE H H N N 178 PHE H2 H N N 179 PHE HA H N N 180 PHE HB2 H N N 181 PHE HB3 H N N 182 PHE HD1 H N N 183 PHE HD2 H N N 184 PHE HE1 H N N 185 PHE HE2 H N N 186 PHE HZ H N N 187 PHE HXT H N N 188 PRO N N N N 189 PRO CA C N S 190 PRO C C N N 191 PRO O O N N 192 PRO CB C N N 193 PRO CG C N N 194 PRO CD C N N 195 PRO OXT O N N 196 PRO H H N N 197 PRO HA H N N 198 PRO HB2 H N N 199 PRO HB3 H N N 200 PRO HG2 H N N 201 PRO HG3 H N N 202 PRO HD2 H N N 203 PRO HD3 H N N 204 PRO HXT H N N 205 THR N N N N 206 THR CA C N S 207 THR C C N N 208 THR O O N N 209 THR CB C N R 210 THR OG1 O N N 211 THR CG2 C N N 212 THR OXT O N N 213 THR H H N N 214 THR H2 H N N 215 THR HA H N N 216 THR HB H N N 217 THR HG1 H N N 218 THR HG21 H N N 219 THR HG22 H N N 220 THR HG23 H N N 221 THR HXT H N N 222 TRP N N N N 223 TRP CA C N S 224 TRP C C N N 225 TRP O O N N 226 TRP CB C N N 227 TRP CG C Y N 228 TRP CD1 C Y N 229 TRP CD2 C Y N 230 TRP NE1 N Y N 231 TRP CE2 C Y N 232 TRP CE3 C Y N 233 TRP CZ2 C Y N 234 TRP CZ3 C Y N 235 TRP CH2 C Y N 236 TRP OXT O N N 237 TRP H H N N 238 TRP H2 H N N 239 TRP HA H N N 240 TRP HB2 H N N 241 TRP HB3 H N N 242 TRP HD1 H N N 243 TRP HE1 H N N 244 TRP HE3 H N N 245 TRP HZ2 H N N 246 TRP HZ3 H N N 247 TRP HH2 H N N 248 TRP HXT H N N 249 TYR N N N N 250 TYR CA C N S 251 TYR C C N N 252 TYR O O N N 253 TYR CB C N N 254 TYR CG C Y N 255 TYR CD1 C Y N 256 TYR CD2 C Y N 257 TYR CE1 C Y N 258 TYR CE2 C Y N 259 TYR CZ C Y N 260 TYR OH O N N 261 TYR OXT O N N 262 TYR H H N N 263 TYR H2 H N N 264 TYR HA H N N 265 TYR HB2 H N N 266 TYR HB3 H N N 267 TYR HD1 H N N 268 TYR HD2 H N N 269 TYR HE1 H N N 270 TYR HE2 H N N 271 TYR HH H N N 272 TYR HXT H N N 273 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 CYS N CA sing N N 39 CYS N H sing N N 40 CYS N H2 sing N N 41 CYS CA C sing N N 42 CYS CA CB sing N N 43 CYS CA HA sing N N 44 CYS C O doub N N 45 CYS C OXT sing N N 46 CYS CB SG sing N N 47 CYS CB HB2 sing N N 48 CYS CB HB3 sing N N 49 CYS SG HG sing N N 50 CYS OXT HXT sing N N 51 GLN N CA sing N N 52 GLN N H sing N N 53 GLN N H2 sing N N 54 GLN CA C sing N N 55 GLN CA CB sing N N 56 GLN CA HA sing N N 57 GLN C O doub N N 58 GLN C OXT sing N N 59 GLN CB CG sing N N 60 GLN CB HB2 sing N N 61 GLN CB HB3 sing N N 62 GLN CG CD sing N N 63 GLN CG HG2 sing N N 64 GLN CG HG3 sing N N 65 GLN CD OE1 doub N N 66 GLN CD NE2 sing N N 67 GLN NE2 HE21 sing N N 68 GLN NE2 HE22 sing N N 69 GLN OXT HXT sing N N 70 GLU N CA sing N N 71 GLU N H sing N N 72 GLU N H2 sing N N 73 GLU CA C sing N N 74 GLU CA CB sing N N 75 GLU CA HA sing N N 76 GLU C O doub N N 77 GLU C OXT sing N N 78 GLU CB CG sing N N 79 GLU CB HB2 sing N N 80 GLU CB HB3 sing N N 81 GLU CG CD sing N N 82 GLU CG HG2 sing N N 83 GLU CG HG3 sing N N 84 GLU CD OE1 doub N N 85 GLU CD OE2 sing N N 86 GLU OE2 HE2 sing N N 87 GLU OXT HXT sing N N 88 GLY N CA sing N N 89 GLY N H sing N N 90 GLY N H2 sing N N 91 GLY CA C sing N N 92 GLY CA HA2 sing N N 93 GLY CA HA3 sing N N 94 GLY C O doub N N 95 GLY C OXT sing N N 96 GLY OXT HXT sing N N 97 GOL C1 O1 sing N N 98 GOL C1 C2 sing N N 99 GOL C1 H11 sing N N 100 GOL C1 H12 sing N N 101 GOL O1 HO1 sing N N 102 GOL C2 O2 sing N N 103 GOL C2 C3 sing N N 104 GOL C2 H2 sing N N 105 GOL O2 HO2 sing N N 106 GOL C3 O3 sing N N 107 GOL C3 H31 sing N N 108 GOL C3 H32 sing N N 109 GOL O3 HO3 sing N N 110 HOH O H1 sing N N 111 HOH O H2 sing N N 112 ILE N CA sing N N 113 ILE N H sing N N 114 ILE N H2 sing N N 115 ILE CA C sing N N 116 ILE CA CB sing N N 117 ILE CA HA sing N N 118 ILE C O doub N N 119 ILE C OXT sing N N 120 ILE CB CG1 sing N N 121 ILE CB CG2 sing N N 122 ILE CB HB sing N N 123 ILE CG1 CD1 sing N N 124 ILE CG1 HG12 sing N N 125 ILE CG1 HG13 sing N N 126 ILE CG2 HG21 sing N N 127 ILE CG2 HG22 sing N N 128 ILE CG2 HG23 sing N N 129 ILE CD1 HD11 sing N N 130 ILE CD1 HD12 sing N N 131 ILE CD1 HD13 sing N N 132 ILE OXT HXT sing N N 133 LEU N CA sing N N 134 LEU N H sing N N 135 LEU N H2 sing N N 136 LEU CA C sing N N 137 LEU CA CB sing N N 138 LEU CA HA sing N N 139 LEU C O doub N N 140 LEU C OXT sing N N 141 LEU CB CG sing N N 142 LEU CB HB2 sing N N 143 LEU CB HB3 sing N N 144 LEU CG CD1 sing N N 145 LEU CG CD2 sing N N 146 LEU CG HG sing N N 147 LEU CD1 HD11 sing N N 148 LEU CD1 HD12 sing N N 149 LEU CD1 HD13 sing N N 150 LEU CD2 HD21 sing N N 151 LEU CD2 HD22 sing N N 152 LEU CD2 HD23 sing N N 153 LEU OXT HXT sing N N 154 PHE N CA sing N N 155 PHE N H sing N N 156 PHE N H2 sing N N 157 PHE CA C sing N N 158 PHE CA CB sing N N 159 PHE CA HA sing N N 160 PHE C O doub N N 161 PHE C OXT sing N N 162 PHE CB CG sing N N 163 PHE CB HB2 sing N N 164 PHE CB HB3 sing N N 165 PHE CG CD1 doub Y N 166 PHE CG CD2 sing Y N 167 PHE CD1 CE1 sing Y N 168 PHE CD1 HD1 sing N N 169 PHE CD2 CE2 doub Y N 170 PHE CD2 HD2 sing N N 171 PHE CE1 CZ doub Y N 172 PHE CE1 HE1 sing N N 173 PHE CE2 CZ sing Y N 174 PHE CE2 HE2 sing N N 175 PHE CZ HZ sing N N 176 PHE OXT HXT sing N N 177 PRO N CA sing N N 178 PRO N CD sing N N 179 PRO N H sing N N 180 PRO CA C sing N N 181 PRO CA CB sing N N 182 PRO CA HA sing N N 183 PRO C O doub N N 184 PRO C OXT sing N N 185 PRO CB CG sing N N 186 PRO CB HB2 sing N N 187 PRO CB HB3 sing N N 188 PRO CG CD sing N N 189 PRO CG HG2 sing N N 190 PRO CG HG3 sing N N 191 PRO CD HD2 sing N N 192 PRO CD HD3 sing N N 193 PRO OXT HXT sing N N 194 THR N CA sing N N 195 THR N H sing N N 196 THR N H2 sing N N 197 THR CA C sing N N 198 THR CA CB sing N N 199 THR CA HA sing N N 200 THR C O doub N N 201 THR C OXT sing N N 202 THR CB OG1 sing N N 203 THR CB CG2 sing N N 204 THR CB HB sing N N 205 THR OG1 HG1 sing N N 206 THR CG2 HG21 sing N N 207 THR CG2 HG22 sing N N 208 THR CG2 HG23 sing N N 209 THR OXT HXT sing N N 210 TRP N CA sing N N 211 TRP N H sing N N 212 TRP N H2 sing N N 213 TRP CA C sing N N 214 TRP CA CB sing N N 215 TRP CA HA sing N N 216 TRP C O doub N N 217 TRP C OXT sing N N 218 TRP CB CG sing N N 219 TRP CB HB2 sing N N 220 TRP CB HB3 sing N N 221 TRP CG CD1 doub Y N 222 TRP CG CD2 sing Y N 223 TRP CD1 NE1 sing Y N 224 TRP CD1 HD1 sing N N 225 TRP CD2 CE2 doub Y N 226 TRP CD2 CE3 sing Y N 227 TRP NE1 CE2 sing Y N 228 TRP NE1 HE1 sing N N 229 TRP CE2 CZ2 sing Y N 230 TRP CE3 CZ3 doub Y N 231 TRP CE3 HE3 sing N N 232 TRP CZ2 CH2 doub Y N 233 TRP CZ2 HZ2 sing N N 234 TRP CZ3 CH2 sing Y N 235 TRP CZ3 HZ3 sing N N 236 TRP CH2 HH2 sing N N 237 TRP OXT HXT sing N N 238 TYR N CA sing N N 239 TYR N H sing N N 240 TYR N H2 sing N N 241 TYR CA C sing N N 242 TYR CA CB sing N N 243 TYR CA HA sing N N 244 TYR C O doub N N 245 TYR C OXT sing N N 246 TYR CB CG sing N N 247 TYR CB HB2 sing N N 248 TYR CB HB3 sing N N 249 TYR CG CD1 doub Y N 250 TYR CG CD2 sing Y N 251 TYR CD1 CE1 sing Y N 252 TYR CD1 HD1 sing N N 253 TYR CD2 CE2 doub Y N 254 TYR CD2 HD2 sing N N 255 TYR CE1 CZ doub Y N 256 TYR CE1 HE1 sing N N 257 TYR CE2 CZ sing Y N 258 TYR CE2 HE2 sing N N 259 TYR CZ OH sing N N 260 TYR OH HH sing N N 261 TYR OXT HXT sing N N 262 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CHLORIDE ION' CL 3 GLYCEROL GOL 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1DFN _pdbx_initial_refinement_model.details 'PDB entry 1DFN' #