data_3GQU # _entry.id 3GQU # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3GQU pdb_00003gqu 10.2210/pdb3gqu/pdb RCSB RCSB052199 ? ? WWPDB D_1000052199 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-04-21 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-07-26 4 'Structure model' 1 3 2024-02-21 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Refinement description' 4 3 'Structure model' 'Source and taxonomy' 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Database references' 7 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' diffrn_detector 2 3 'Structure model' entity_src_gen 3 3 'Structure model' software 4 4 'Structure model' chem_comp_atom 5 4 'Structure model' chem_comp_bond 6 4 'Structure model' database_2 7 4 'Structure model' struct_ref_seq_dif 8 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_diffrn_detector.detector' 2 4 'Structure model' '_database_2.pdbx_DOI' 3 4 'Structure model' '_database_2.pdbx_database_accession' 4 4 'Structure model' '_struct_ref_seq_dif.details' 5 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 6 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 7 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.entry_id 3GQU _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2009-03-24 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 3GQX _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Reyes, F.E.' 1 'Hardin, J.W.' 2 'Batey, R.T.' 3 # _citation.id primary _citation.title 'Analysis of a Critical Interaction within the Archaeal Box C/D Small Ribonucleoprotein Complex' _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 284 _citation.page_first 15317 _citation.page_last 15324 _citation.year 2009 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 19336398 _citation.pdbx_database_id_DOI 10.1074/jbc.M901368200 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Hardin, J.W.' 1 ? primary 'Reyes, F.E.' 2 ? primary 'Batey, R.T.' 3 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'NOP5P PROTEIN' 18981.275 1 ? ? 'RNA BINDING DOMAIN' ? 2 non-polymer syn 'IODIDE ION' 126.904 12 ? ? ? ? 3 water nat water 18.015 58 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GRMRIQEQSGARDKMVIGAGGLEDYIDKAMDDVAPNLKALVGAKLGARLISLAGGLKELAMLPSSTIQVLGAEKALFRHL RTGAKPPKHGVIYQYPAINRSPWWQRGKIARALAGKLAIAARVDYFSGEYIAEELKKELEARIKEIKEKYPRPPKRRKEE RKGRKPWKE ; _entity_poly.pdbx_seq_one_letter_code_can ;GRMRIQEQSGARDKMVIGAGGLEDYIDKAMDDVAPNLKALVGAKLGARLISLAGGLKELAMLPSSTIQVLGAEKALFRHL RTGAKPPKHGVIYQYPAINRSPWWQRGKIARALAGKLAIAARVDYFSGEYIAEELKKELEARIKEIKEKYPRPPKRRKEE RKGRKPWKE ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'IODIDE ION' IOD 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 ARG n 1 3 MET n 1 4 ARG n 1 5 ILE n 1 6 GLN n 1 7 GLU n 1 8 GLN n 1 9 SER n 1 10 GLY n 1 11 ALA n 1 12 ARG n 1 13 ASP n 1 14 LYS n 1 15 MET n 1 16 VAL n 1 17 ILE n 1 18 GLY n 1 19 ALA n 1 20 GLY n 1 21 GLY n 1 22 LEU n 1 23 GLU n 1 24 ASP n 1 25 TYR n 1 26 ILE n 1 27 ASP n 1 28 LYS n 1 29 ALA n 1 30 MET n 1 31 ASP n 1 32 ASP n 1 33 VAL n 1 34 ALA n 1 35 PRO n 1 36 ASN n 1 37 LEU n 1 38 LYS n 1 39 ALA n 1 40 LEU n 1 41 VAL n 1 42 GLY n 1 43 ALA n 1 44 LYS n 1 45 LEU n 1 46 GLY n 1 47 ALA n 1 48 ARG n 1 49 LEU n 1 50 ILE n 1 51 SER n 1 52 LEU n 1 53 ALA n 1 54 GLY n 1 55 GLY n 1 56 LEU n 1 57 LYS n 1 58 GLU n 1 59 LEU n 1 60 ALA n 1 61 MET n 1 62 LEU n 1 63 PRO n 1 64 SER n 1 65 SER n 1 66 THR n 1 67 ILE n 1 68 GLN n 1 69 VAL n 1 70 LEU n 1 71 GLY n 1 72 ALA n 1 73 GLU n 1 74 LYS n 1 75 ALA n 1 76 LEU n 1 77 PHE n 1 78 ARG n 1 79 HIS n 1 80 LEU n 1 81 ARG n 1 82 THR n 1 83 GLY n 1 84 ALA n 1 85 LYS n 1 86 PRO n 1 87 PRO n 1 88 LYS n 1 89 HIS n 1 90 GLY n 1 91 VAL n 1 92 ILE n 1 93 TYR n 1 94 GLN n 1 95 TYR n 1 96 PRO n 1 97 ALA n 1 98 ILE n 1 99 ASN n 1 100 ARG n 1 101 SER n 1 102 PRO n 1 103 TRP n 1 104 TRP n 1 105 GLN n 1 106 ARG n 1 107 GLY n 1 108 LYS n 1 109 ILE n 1 110 ALA n 1 111 ARG n 1 112 ALA n 1 113 LEU n 1 114 ALA n 1 115 GLY n 1 116 LYS n 1 117 LEU n 1 118 ALA n 1 119 ILE n 1 120 ALA n 1 121 ALA n 1 122 ARG n 1 123 VAL n 1 124 ASP n 1 125 TYR n 1 126 PHE n 1 127 SER n 1 128 GLY n 1 129 GLU n 1 130 TYR n 1 131 ILE n 1 132 ALA n 1 133 GLU n 1 134 GLU n 1 135 LEU n 1 136 LYS n 1 137 LYS n 1 138 GLU n 1 139 LEU n 1 140 GLU n 1 141 ALA n 1 142 ARG n 1 143 ILE n 1 144 LYS n 1 145 GLU n 1 146 ILE n 1 147 LYS n 1 148 GLU n 1 149 LYS n 1 150 TYR n 1 151 PRO n 1 152 ARG n 1 153 PRO n 1 154 PRO n 1 155 LYS n 1 156 ARG n 1 157 ARG n 1 158 LYS n 1 159 GLU n 1 160 GLU n 1 161 ARG n 1 162 LYS n 1 163 GLY n 1 164 ARG n 1 165 LYS n 1 166 PRO n 1 167 TRP n 1 168 LYS n 1 169 GLU n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample ? 2 17 ? ? 'NOP5P, PH0053' ? ? ? ? ? ? 'Pyrococcus horikoshii' 53953 ? ? ? ? ? ? ? ? 'ESCHERICHIA COLI' 562 ? ? ? ? ? ? 'ROSETTA BL21 (DE3) PLYSS' ? ? ? ? ? ? ? PLASMID ? ? ? PET41B ? ? 1 2 sample ? 22 156 ? ? 'NOP5P, PH0053' ? ? ? ? ? ? 'Pyrococcus horikoshii' 53953 ? ? ? ? ? ? ? ? 'ESCHERICHIA COLI' 562 ? ? ? ? ? ? 'ROSETTA BL21 (DE3) PLYSS' ? ? ? ? ? ? ? PLASMID ? ? ? PET41B ? ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 IOD non-polymer . 'IODIDE ION' ? 'I -1' 126.904 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 222 ? ? ? A . n A 1 2 ARG 2 223 ? ? ? A . n A 1 3 MET 3 224 ? ? ? A . n A 1 4 ARG 4 225 ? ? ? A . n A 1 5 ILE 5 226 ? ? ? A . n A 1 6 GLN 6 227 ? ? ? A . n A 1 7 GLU 7 228 ? ? ? A . n A 1 8 GLN 8 229 ? ? ? A . n A 1 9 SER 9 230 ? ? ? A . n A 1 10 GLY 10 231 ? ? ? A . n A 1 11 ALA 11 232 ? ? ? A . n A 1 12 ARG 12 233 ? ? ? A . n A 1 13 ASP 13 234 ? ? ? A . n A 1 14 LYS 14 235 ? ? ? A . n A 1 15 MET 15 236 ? ? ? A . n A 1 16 VAL 16 237 ? ? ? A . n A 1 17 ILE 17 238 ? ? ? A . n A 1 18 GLY 18 239 ? ? ? A . n A 1 19 ALA 19 240 ? ? ? A . n A 1 20 GLY 20 241 241 GLY GLY A . n A 1 21 GLY 21 242 242 GLY GLY A . n A 1 22 LEU 22 243 243 LEU LEU A . n A 1 23 GLU 23 244 244 GLU GLU A . n A 1 24 ASP 24 245 245 ASP ASP A . n A 1 25 TYR 25 246 246 TYR TYR A . n A 1 26 ILE 26 247 247 ILE ILE A . n A 1 27 ASP 27 248 248 ASP ASP A . n A 1 28 LYS 28 249 249 LYS LYS A . n A 1 29 ALA 29 250 250 ALA ALA A . n A 1 30 MET 30 251 251 MET MET A . n A 1 31 ASP 31 252 252 ASP ASP A . n A 1 32 ASP 32 253 253 ASP ASP A . n A 1 33 VAL 33 254 254 VAL VAL A . n A 1 34 ALA 34 255 255 ALA ALA A . n A 1 35 PRO 35 256 256 PRO PRO A . n A 1 36 ASN 36 257 257 ASN ASN A . n A 1 37 LEU 37 258 258 LEU LEU A . n A 1 38 LYS 38 259 259 LYS LYS A . n A 1 39 ALA 39 260 260 ALA ALA A . n A 1 40 LEU 40 261 261 LEU LEU A . n A 1 41 VAL 41 262 262 VAL VAL A . n A 1 42 GLY 42 263 263 GLY GLY A . n A 1 43 ALA 43 264 264 ALA ALA A . n A 1 44 LYS 44 265 265 LYS LYS A . n A 1 45 LEU 45 266 266 LEU LEU A . n A 1 46 GLY 46 267 267 GLY GLY A . n A 1 47 ALA 47 268 268 ALA ALA A . n A 1 48 ARG 48 269 269 ARG ARG A . n A 1 49 LEU 49 270 270 LEU LEU A . n A 1 50 ILE 50 271 271 ILE ILE A . n A 1 51 SER 51 272 272 SER SER A . n A 1 52 LEU 52 273 273 LEU LEU A . n A 1 53 ALA 53 274 274 ALA ALA A . n A 1 54 GLY 54 275 275 GLY GLY A . n A 1 55 GLY 55 276 276 GLY GLY A . n A 1 56 LEU 56 277 277 LEU LEU A . n A 1 57 LYS 57 278 278 LYS LYS A . n A 1 58 GLU 58 279 279 GLU GLU A . n A 1 59 LEU 59 280 280 LEU LEU A . n A 1 60 ALA 60 281 281 ALA ALA A . n A 1 61 MET 61 282 282 MET MET A . n A 1 62 LEU 62 283 283 LEU LEU A . n A 1 63 PRO 63 284 284 PRO PRO A . n A 1 64 SER 64 285 285 SER SER A . n A 1 65 SER 65 286 286 SER SER A . n A 1 66 THR 66 287 287 THR THR A . n A 1 67 ILE 67 288 288 ILE ILE A . n A 1 68 GLN 68 289 289 GLN GLN A . n A 1 69 VAL 69 290 290 VAL VAL A . n A 1 70 LEU 70 291 291 LEU LEU A . n A 1 71 GLY 71 292 292 GLY GLY A . n A 1 72 ALA 72 293 293 ALA ALA A . n A 1 73 GLU 73 294 ? ? ? A . n A 1 74 LYS 74 295 ? ? ? A . n A 1 75 ALA 75 296 ? ? ? A . n A 1 76 LEU 76 297 ? ? ? A . n A 1 77 PHE 77 298 ? ? ? A . n A 1 78 ARG 78 299 ? ? ? A . n A 1 79 HIS 79 300 ? ? ? A . n A 1 80 LEU 80 301 ? ? ? A . n A 1 81 ARG 81 302 ? ? ? A . n A 1 82 THR 82 303 ? ? ? A . n A 1 83 GLY 83 304 ? ? ? A . n A 1 84 ALA 84 305 ? ? ? A . n A 1 85 LYS 85 306 ? ? ? A . n A 1 86 PRO 86 307 ? ? ? A . n A 1 87 PRO 87 308 ? ? ? A . n A 1 88 LYS 88 309 ? ? ? A . n A 1 89 HIS 89 310 310 HIS HIS A . n A 1 90 GLY 90 311 311 GLY GLY A . n A 1 91 VAL 91 312 312 VAL VAL A . n A 1 92 ILE 92 313 313 ILE ILE A . n A 1 93 TYR 93 314 314 TYR TYR A . n A 1 94 GLN 94 315 315 GLN GLN A . n A 1 95 TYR 95 316 316 TYR TYR A . n A 1 96 PRO 96 317 317 PRO PRO A . n A 1 97 ALA 97 318 318 ALA ALA A . n A 1 98 ILE 98 319 319 ILE ILE A . n A 1 99 ASN 99 320 320 ASN ASN A . n A 1 100 ARG 100 321 321 ARG ARG A . n A 1 101 SER 101 322 322 SER SER A . n A 1 102 PRO 102 323 323 PRO PRO A . n A 1 103 TRP 103 324 324 TRP TRP A . n A 1 104 TRP 104 325 325 TRP TRP A . n A 1 105 GLN 105 326 326 GLN GLN A . n A 1 106 ARG 106 327 327 ARG ARG A . n A 1 107 GLY 107 328 328 GLY GLY A . n A 1 108 LYS 108 329 329 LYS LYS A . n A 1 109 ILE 109 330 330 ILE ILE A . n A 1 110 ALA 110 331 331 ALA ALA A . n A 1 111 ARG 111 332 332 ARG ARG A . n A 1 112 ALA 112 333 333 ALA ALA A . n A 1 113 LEU 113 334 334 LEU LEU A . n A 1 114 ALA 114 335 335 ALA ALA A . n A 1 115 GLY 115 336 336 GLY GLY A . n A 1 116 LYS 116 337 337 LYS LYS A . n A 1 117 LEU 117 338 338 LEU LEU A . n A 1 118 ALA 118 339 339 ALA ALA A . n A 1 119 ILE 119 340 340 ILE ILE A . n A 1 120 ALA 120 341 341 ALA ALA A . n A 1 121 ALA 121 342 342 ALA ALA A . n A 1 122 ARG 122 343 343 ARG ARG A . n A 1 123 VAL 123 344 344 VAL VAL A . n A 1 124 ASP 124 345 345 ASP ASP A . n A 1 125 TYR 125 346 346 TYR TYR A . n A 1 126 PHE 126 347 347 PHE PHE A . n A 1 127 SER 127 348 348 SER SER A . n A 1 128 GLY 128 349 349 GLY GLY A . n A 1 129 GLU 129 350 350 GLU GLU A . n A 1 130 TYR 130 351 351 TYR TYR A . n A 1 131 ILE 131 352 352 ILE ILE A . n A 1 132 ALA 132 353 353 ALA ALA A . n A 1 133 GLU 133 354 354 GLU GLU A . n A 1 134 GLU 134 355 355 GLU GLU A . n A 1 135 LEU 135 356 356 LEU LEU A . n A 1 136 LYS 136 357 357 LYS LYS A . n A 1 137 LYS 137 358 358 LYS LYS A . n A 1 138 GLU 138 359 359 GLU GLU A . n A 1 139 LEU 139 360 360 LEU LEU A . n A 1 140 GLU 140 361 361 GLU GLU A . n A 1 141 ALA 141 362 362 ALA ALA A . n A 1 142 ARG 142 363 363 ARG ARG A . n A 1 143 ILE 143 364 364 ILE ILE A . n A 1 144 LYS 144 365 365 LYS LYS A . n A 1 145 GLU 145 366 366 GLU GLU A . n A 1 146 ILE 146 367 367 ILE ILE A . n A 1 147 LYS 147 368 368 LYS LYS A . n A 1 148 GLU 148 369 369 GLU GLU A . n A 1 149 LYS 149 370 370 LYS LYS A . n A 1 150 TYR 150 371 371 TYR TYR A . n A 1 151 PRO 151 372 372 PRO PRO A . n A 1 152 ARG 152 373 373 ARG ARG A . n A 1 153 PRO 153 374 ? ? ? A . n A 1 154 PRO 154 375 ? ? ? A . n A 1 155 LYS 155 376 ? ? ? A . n A 1 156 ARG 156 377 ? ? ? A . n A 1 157 ARG 157 378 ? ? ? A . n A 1 158 LYS 158 379 ? ? ? A . n A 1 159 GLU 159 380 ? ? ? A . n A 1 160 GLU 160 381 ? ? ? A . n A 1 161 ARG 161 382 ? ? ? A . n A 1 162 LYS 162 383 ? ? ? A . n A 1 163 GLY 163 384 ? ? ? A . n A 1 164 ARG 164 385 ? ? ? A . n A 1 165 LYS 165 386 ? ? ? A . n A 1 166 PRO 166 387 ? ? ? A . n A 1 167 TRP 167 388 ? ? ? A . n A 1 168 LYS 168 389 ? ? ? A . n A 1 169 GLU 169 390 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IOD 1 1 1 IOD IOD A . C 2 IOD 1 2 2 IOD IOD A . D 2 IOD 1 3 3 IOD IOD A . E 2 IOD 1 4 4 IOD IOD A . F 2 IOD 1 5 5 IOD IOD A . G 2 IOD 1 6 6 IOD IOD A . H 2 IOD 1 7 7 IOD IOD A . I 2 IOD 1 8 8 IOD IOD A . J 2 IOD 1 9 9 IOD IOD A . K 2 IOD 1 10 10 IOD IOD A . L 2 IOD 1 11 11 IOD IOD A . M 2 IOD 1 12 12 IOD IOD A . N 3 HOH 1 13 13 HOH HOH A . N 3 HOH 2 14 14 HOH HOH A . N 3 HOH 3 15 15 HOH HOH A . N 3 HOH 4 16 16 HOH HOH A . N 3 HOH 5 17 17 HOH HOH A . N 3 HOH 6 18 18 HOH HOH A . N 3 HOH 7 19 19 HOH HOH A . N 3 HOH 8 20 20 HOH HOH A . N 3 HOH 9 21 21 HOH HOH A . N 3 HOH 10 22 22 HOH HOH A . N 3 HOH 11 23 23 HOH HOH A . N 3 HOH 12 24 24 HOH HOH A . N 3 HOH 13 25 25 HOH HOH A . N 3 HOH 14 26 26 HOH HOH A . N 3 HOH 15 27 27 HOH HOH A . N 3 HOH 16 28 28 HOH HOH A . N 3 HOH 17 29 29 HOH HOH A . N 3 HOH 18 30 30 HOH HOH A . N 3 HOH 19 31 31 HOH HOH A . N 3 HOH 20 32 32 HOH HOH A . N 3 HOH 21 33 33 HOH HOH A . N 3 HOH 22 34 34 HOH HOH A . N 3 HOH 23 35 35 HOH HOH A . N 3 HOH 24 36 36 HOH HOH A . N 3 HOH 25 37 37 HOH HOH A . N 3 HOH 26 38 38 HOH HOH A . N 3 HOH 27 39 39 HOH HOH A . N 3 HOH 28 40 40 HOH HOH A . N 3 HOH 29 41 41 HOH HOH A . N 3 HOH 30 42 42 HOH HOH A . N 3 HOH 31 43 43 HOH HOH A . N 3 HOH 32 44 44 HOH HOH A . N 3 HOH 33 45 45 HOH HOH A . N 3 HOH 34 46 46 HOH HOH A . N 3 HOH 35 47 47 HOH HOH A . N 3 HOH 36 48 48 HOH HOH A . N 3 HOH 37 49 49 HOH HOH A . N 3 HOH 38 50 50 HOH HOH A . N 3 HOH 39 51 51 HOH HOH A . N 3 HOH 40 52 52 HOH HOH A . N 3 HOH 41 53 53 HOH HOH A . N 3 HOH 42 54 54 HOH HOH A . N 3 HOH 43 55 55 HOH HOH A . N 3 HOH 44 56 56 HOH HOH A . N 3 HOH 45 57 57 HOH HOH A . N 3 HOH 46 58 58 HOH HOH A . N 3 HOH 47 391 391 HOH HOH A . N 3 HOH 48 392 392 HOH HOH A . N 3 HOH 49 393 393 HOH HOH A . N 3 HOH 50 394 394 HOH HOH A . N 3 HOH 51 395 395 HOH HOH A . N 3 HOH 52 396 396 HOH HOH A . N 3 HOH 53 397 397 HOH HOH A . N 3 HOH 54 398 398 HOH HOH A . N 3 HOH 55 399 399 HOH HOH A . N 3 HOH 56 400 400 HOH HOH A . N 3 HOH 57 401 401 HOH HOH A . N 3 HOH 58 402 402 HOH HOH A . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ASP 245 ? CG ? A ASP 24 CG 2 1 Y 1 A ASP 245 ? OD1 ? A ASP 24 OD1 3 1 Y 1 A ASP 245 ? OD2 ? A ASP 24 OD2 4 1 Y 1 A LYS 249 ? CG ? A LYS 28 CG 5 1 Y 1 A LYS 249 ? CD ? A LYS 28 CD 6 1 Y 1 A LYS 249 ? CE ? A LYS 28 CE 7 1 Y 1 A LYS 249 ? NZ ? A LYS 28 NZ 8 1 Y 1 A LYS 265 ? CG ? A LYS 44 CG 9 1 Y 1 A LYS 265 ? CD ? A LYS 44 CD 10 1 Y 1 A LYS 265 ? CE ? A LYS 44 CE 11 1 Y 1 A LYS 265 ? NZ ? A LYS 44 NZ 12 1 Y 1 A LYS 278 ? CG ? A LYS 57 CG 13 1 Y 1 A LYS 278 ? CD ? A LYS 57 CD 14 1 Y 1 A LYS 278 ? CE ? A LYS 57 CE 15 1 Y 1 A LYS 278 ? NZ ? A LYS 57 NZ 16 1 Y 1 A ARG 321 ? CG ? A ARG 100 CG 17 1 Y 1 A ARG 321 ? CD ? A ARG 100 CD 18 1 Y 1 A ARG 321 ? NE ? A ARG 100 NE 19 1 Y 1 A ARG 321 ? CZ ? A ARG 100 CZ 20 1 Y 1 A ARG 321 ? NH1 ? A ARG 100 NH1 21 1 Y 1 A ARG 321 ? NH2 ? A ARG 100 NH2 22 1 Y 1 A LYS 329 ? CG ? A LYS 108 CG 23 1 Y 1 A LYS 329 ? CD ? A LYS 108 CD 24 1 Y 1 A LYS 329 ? CE ? A LYS 108 CE 25 1 Y 1 A LYS 329 ? NZ ? A LYS 108 NZ 26 1 Y 1 A ARG 332 ? CG ? A ARG 111 CG 27 1 Y 1 A ARG 332 ? CD ? A ARG 111 CD 28 1 Y 1 A ARG 332 ? NE ? A ARG 111 NE 29 1 Y 1 A ARG 332 ? CZ ? A ARG 111 CZ 30 1 Y 1 A ARG 332 ? NH1 ? A ARG 111 NH1 31 1 Y 1 A ARG 332 ? NH2 ? A ARG 111 NH2 32 1 Y 1 A GLU 354 ? CG ? A GLU 133 CG 33 1 Y 1 A GLU 354 ? CD ? A GLU 133 CD 34 1 Y 1 A GLU 354 ? OE1 ? A GLU 133 OE1 35 1 Y 1 A GLU 354 ? OE2 ? A GLU 133 OE2 36 1 Y 1 A LEU 356 ? CG ? A LEU 135 CG 37 1 Y 1 A LEU 356 ? CD1 ? A LEU 135 CD1 38 1 Y 1 A LEU 356 ? CD2 ? A LEU 135 CD2 39 1 Y 1 A LYS 357 ? CG ? A LYS 136 CG 40 1 Y 1 A LYS 357 ? CD ? A LYS 136 CD 41 1 Y 1 A LYS 357 ? CE ? A LYS 136 CE 42 1 Y 1 A LYS 357 ? NZ ? A LYS 136 NZ 43 1 Y 1 A LEU 360 ? CG ? A LEU 139 CG 44 1 Y 1 A LEU 360 ? CD1 ? A LEU 139 CD1 45 1 Y 1 A LEU 360 ? CD2 ? A LEU 139 CD2 46 1 Y 1 A GLU 361 ? CG ? A GLU 140 CG 47 1 Y 1 A GLU 361 ? CD ? A GLU 140 CD 48 1 Y 1 A GLU 361 ? OE1 ? A GLU 140 OE1 49 1 Y 1 A GLU 361 ? OE2 ? A GLU 140 OE2 50 1 Y 1 A ARG 363 ? CG ? A ARG 142 CG 51 1 Y 1 A ARG 363 ? CD ? A ARG 142 CD 52 1 Y 1 A ARG 363 ? NE ? A ARG 142 NE 53 1 Y 1 A ARG 363 ? CZ ? A ARG 142 CZ 54 1 Y 1 A ARG 363 ? NH1 ? A ARG 142 NH1 55 1 Y 1 A ARG 363 ? NH2 ? A ARG 142 NH2 56 1 Y 1 A ILE 364 ? CG1 ? A ILE 143 CG1 57 1 Y 1 A ILE 364 ? CG2 ? A ILE 143 CG2 58 1 Y 1 A ILE 364 ? CD1 ? A ILE 143 CD1 59 1 Y 1 A LYS 365 ? CG ? A LYS 144 CG 60 1 Y 1 A LYS 365 ? CD ? A LYS 144 CD 61 1 Y 1 A LYS 365 ? CE ? A LYS 144 CE 62 1 Y 1 A LYS 365 ? NZ ? A LYS 144 NZ 63 1 Y 1 A GLU 366 ? CG ? A GLU 145 CG 64 1 Y 1 A GLU 366 ? CD ? A GLU 145 CD 65 1 Y 1 A GLU 366 ? OE1 ? A GLU 145 OE1 66 1 Y 1 A GLU 366 ? OE2 ? A GLU 145 OE2 67 1 Y 1 A ILE 367 ? CG1 ? A ILE 146 CG1 68 1 Y 1 A ILE 367 ? CG2 ? A ILE 146 CG2 69 1 Y 1 A ILE 367 ? CD1 ? A ILE 146 CD1 70 1 Y 1 A LYS 368 ? CG ? A LYS 147 CG 71 1 Y 1 A LYS 368 ? CD ? A LYS 147 CD 72 1 Y 1 A LYS 368 ? CE ? A LYS 147 CE 73 1 Y 1 A LYS 368 ? NZ ? A LYS 147 NZ 74 1 Y 1 A GLU 369 ? CG ? A GLU 148 CG 75 1 Y 1 A GLU 369 ? CD ? A GLU 148 CD 76 1 Y 1 A GLU 369 ? OE1 ? A GLU 148 OE1 77 1 Y 1 A GLU 369 ? OE2 ? A GLU 148 OE2 78 1 Y 1 A LYS 370 ? CG ? A LYS 149 CG 79 1 Y 1 A LYS 370 ? CD ? A LYS 149 CD 80 1 Y 1 A LYS 370 ? CE ? A LYS 149 CE 81 1 Y 1 A LYS 370 ? NZ ? A LYS 149 NZ 82 1 Y 1 A TYR 371 ? CG ? A TYR 150 CG 83 1 Y 1 A TYR 371 ? CD1 ? A TYR 150 CD1 84 1 Y 1 A TYR 371 ? CD2 ? A TYR 150 CD2 85 1 Y 1 A TYR 371 ? CE1 ? A TYR 150 CE1 86 1 Y 1 A TYR 371 ? CE2 ? A TYR 150 CE2 87 1 Y 1 A TYR 371 ? CZ ? A TYR 150 CZ 88 1 Y 1 A TYR 371 ? OH ? A TYR 150 OH 89 1 Y 1 A ARG 373 ? CG ? A ARG 152 CG 90 1 Y 1 A ARG 373 ? CD ? A ARG 152 CD 91 1 Y 1 A ARG 373 ? NE ? A ARG 152 NE 92 1 Y 1 A ARG 373 ? CZ ? A ARG 152 CZ 93 1 Y 1 A ARG 373 ? NH1 ? A ARG 152 NH1 94 1 Y 1 A ARG 373 ? NH2 ? A ARG 152 NH2 # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal MOSFLM . ? package 'Andrew G.W. Leslie' andrew@mrc-lmb.cam.ac.uk 'data reduction' http://www.mrc-lmb.cam.ac.uk/harry/mosflm/ ? ? 1 SCALA 3.3.6 2008/04/29 other 'Phil R. Evans' pre@mrc-lmb.cam.ac.uk 'data scaling' http://www.ccp4.ac.uk/dist/html/scala.html Fortran_77 ? 2 PHASER . ? program 'Randy J. Read' cimr-phaser@lists.cam.ac.uk phasing http://www-structmed.cimr.cam.ac.uk/phaser/ ? ? 3 RESOLVE 2.13 1-Jun-2008 program 'Thomas C. Terwilliger' terwilliger@lanl.gov phasing http://www.solve.lanl.gov/ ? ? 4 PHENIX . ? package 'Paul D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 5 PDB_EXTRACT 3.006 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 6 # _cell.entry_id 3GQU _cell.length_a 73.604 _cell.length_b 73.604 _cell.length_c 114.279 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3GQU _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? # _exptl.crystals_number 1 _exptl.entry_id 3GQU _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_percent_sol 69.87 _exptl_crystal.density_Matthews 4.55 _exptl_crystal.density_meas ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 6.8 _exptl_crystal_grow.temp 290 _exptl_crystal_grow.pdbx_details '500MM POTASSIUM IODIDE, 2% PEG 3350, pH 6.8, VAPOR DIFFUSION, HANGING DROP, temperature 290K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 93.15 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IV' _diffrn_detector.pdbx_collection_date 2006-11-08 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'Ni FILTER' _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.502 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type RIGAKU _diffrn_source.pdbx_wavelength_list 1.502 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? # _reflns.entry_id 3GQU _reflns.d_resolution_high 1.957 _reflns.d_resolution_low 23.682 _reflns.number_all ? _reflns.number_obs 13956 _reflns.pdbx_netI_over_sigmaI 4.944 _reflns.pdbx_Rsym_value 0.149 _reflns.pdbx_redundancy 21.800 _reflns.percent_possible_obs 84.700 _reflns.observed_criterion_sigma_F 2 _reflns.observed_criterion_sigma_I 2 _reflns.pdbx_Rmerge_I_obs ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.95 _reflns_shell.d_res_low 2.06 _reflns_shell.number_measured_obs ? _reflns_shell.number_measured_all 5530 _reflns_shell.number_unique_obs ? _reflns_shell.Rmerge_I_obs 0.040 _reflns_shell.meanI_over_sigI_obs 0.2 _reflns_shell.pdbx_Rsym_value 0.03971 _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_redundancy 6.20 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 888 _reflns_shell.percent_possible_all 27.00 _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3GQU _refine.ls_d_res_high 2.500 _refine.ls_d_res_low 23.683 _refine.pdbx_ls_sigma_F 1.58 _refine.ls_percent_reflns_obs 100.000 _refine.ls_number_reflns_obs 11411 _refine.ls_R_factor_obs 0.302 _refine.ls_R_factor_R_work 0.299 _refine.ls_R_factor_R_free 0.334 _refine.ls_percent_reflns_R_free 10.010 _refine.ls_number_reflns_R_free 1142 _refine.B_iso_mean 50.012 _refine.solvent_model_param_bsol 92.238 _refine.solvent_model_param_ksol 0.363 _refine.aniso_B[1][1] -5.998 _refine.aniso_B[2][2] -5.998 _refine.aniso_B[3][3] 11.996 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.overall_SU_ML 0.550 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.pdbx_solvent_vdw_probe_radii 1.110 _refine.pdbx_solvent_shrinkage_radii 0.900 _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_stereochemistry_target_values MLHL _refine.B_iso_max 169.84 _refine.B_iso_min 25.12 _refine.occupancy_max 1.00 _refine.occupancy_min 1.00 _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all 11411 _refine.ls_R_factor_all ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_isotropic_thermal_model ? _refine.details ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_ion_probe_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_B ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_overall_ESU_R ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 811 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 12 _refine_hist.number_atoms_solvent 58 _refine_hist.number_atoms_total 881 _refine_hist.d_res_high 2.500 _refine_hist.d_res_low 23.683 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 825 0.011 ? ? 'X-RAY DIFFRACTION' ? f_angle_d 1126 1.597 ? ? 'X-RAY DIFFRACTION' ? f_chiral_restr 132 0.102 ? ? 'X-RAY DIFFRACTION' ? f_plane_restr 146 0.005 ? ? 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 268 19.647 ? ? 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.percent_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_R_work _refine_ls_shell.R_factor_R_free _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id 2.500 2.614 8 100.000 1258 . 0.301 0.393 . 140 . 1398 . . 'X-RAY DIFFRACTION' 2.614 2.751 8 100.000 1244 . 0.291 0.356 . 139 . 1383 . . 'X-RAY DIFFRACTION' 2.751 2.923 8 100.000 1258 . 0.283 0.353 . 140 . 1398 . . 'X-RAY DIFFRACTION' 2.923 3.149 8 100.000 1259 . 0.281 0.370 . 140 . 1399 . . 'X-RAY DIFFRACTION' 3.149 3.465 8 100.000 1273 . 0.277 0.358 . 141 . 1414 . . 'X-RAY DIFFRACTION' 3.465 3.964 8 100.000 1280 . 0.247 0.269 . 142 . 1422 . . 'X-RAY DIFFRACTION' 3.964 4.986 8 100.000 1312 . 0.236 0.252 . 146 . 1458 . . 'X-RAY DIFFRACTION' 4.986 23.684 8 100.000 1385 . 0.313 0.339 . 154 . 1539 . . 'X-RAY DIFFRACTION' # _struct.entry_id 3GQU _struct.title 'Pyrococcus Horikoshii NOP5 RNA Binding Domain' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3GQU _struct_keywords.text 'RNA BINDING DOMAIN, RNA BINDING PROTEIN' _struct_keywords.pdbx_keywords 'RNA BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? I N N 2 ? J N N 2 ? K N N 2 ? L N N 2 ? M N N 2 ? N N N 3 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP O57810_PYRHO O57810 1 RMRIQEQSGARDKMVI 120 ? 2 UNP O57810_PYRHO O57810 1 ;LEDYIDKAMDDVAPNLKALVGAKLGARLISLAGGLKELAMLPSSTIQVLGAEKALFRHLRTGAKPPKHGVIYQYPAINRS PWWQRGKIARALAGKLAIAARVDYFSGEYIAEELKKELEARIKEIKEKYPRPPKRRKEERKGRKPWKE ; 244 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3GQU A 2 ? 17 ? O57810 120 ? 135 ? 223 238 2 2 3GQU A 22 ? 156 ? O57810 244 ? 378 ? 243 377 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3GQU GLY A 1 ? UNP O57810 ? ? 'expression tag' 222 1 1 3GQU GLY A 18 ? UNP O57810 ? ? linker 239 2 1 3GQU ALA A 19 ? UNP O57810 ? ? linker 240 3 1 3GQU GLY A 20 ? UNP O57810 ? ? linker 241 4 1 3GQU GLY A 21 ? UNP O57810 ? ? linker 242 5 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 21 ? ALA A 34 ? GLY A 242 ALA A 255 1 ? 14 HELX_P HELX_P2 2 ALA A 34 ? GLY A 42 ? ALA A 255 GLY A 263 1 ? 9 HELX_P HELX_P3 3 GLY A 42 ? GLY A 54 ? GLY A 263 GLY A 275 1 ? 13 HELX_P HELX_P4 4 GLY A 55 ? MET A 61 ? GLY A 276 MET A 282 1 ? 7 HELX_P HELX_P5 5 SER A 64 ? VAL A 69 ? SER A 285 VAL A 290 1 ? 6 HELX_P HELX_P6 6 GLY A 90 ? GLN A 94 ? GLY A 311 GLN A 315 5 ? 5 HELX_P HELX_P7 7 TYR A 95 ? ARG A 100 ? TYR A 316 ARG A 321 1 ? 6 HELX_P HELX_P8 8 GLN A 105 ? SER A 127 ? GLN A 326 SER A 348 1 ? 23 HELX_P HELX_P9 9 GLU A 134 ? ILE A 146 ? GLU A 355 ILE A 367 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A IOD 1 ? 2 'BINDING SITE FOR RESIDUE IOD A 1' AC2 Software A IOD 2 ? 2 'BINDING SITE FOR RESIDUE IOD A 2' AC3 Software A IOD 3 ? 1 'BINDING SITE FOR RESIDUE IOD A 3' AC4 Software A IOD 4 ? 1 'BINDING SITE FOR RESIDUE IOD A 4' AC5 Software A IOD 5 ? 1 'BINDING SITE FOR RESIDUE IOD A 5' AC6 Software A IOD 6 ? 3 'BINDING SITE FOR RESIDUE IOD A 6' AC7 Software A IOD 7 ? 1 'BINDING SITE FOR RESIDUE IOD A 7' AC8 Software A IOD 9 ? 1 'BINDING SITE FOR RESIDUE IOD A 9' AC9 Software A IOD 11 ? 1 'BINDING SITE FOR RESIDUE IOD A 11' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 2 IOD C . ? IOD A 2 . ? 1_555 ? 2 AC1 2 HOH N . ? HOH A 36 . ? 1_555 ? 3 AC2 2 IOD B . ? IOD A 1 . ? 1_555 ? 4 AC2 2 GLN A 94 ? GLN A 315 . ? 1_555 ? 5 AC3 1 HOH N . ? HOH A 27 . ? 1_555 ? 6 AC4 1 HOH N . ? HOH A 26 . ? 1_555 ? 7 AC5 1 ASN A 99 ? ASN A 320 . ? 1_555 ? 8 AC6 3 IOD H . ? IOD A 7 . ? 1_555 ? 9 AC6 3 LEU A 22 ? LEU A 243 . ? 7_555 ? 10 AC6 3 LEU A 56 ? LEU A 277 . ? 1_555 ? 11 AC7 1 IOD G . ? IOD A 6 . ? 1_555 ? 12 AC8 1 LYS A 116 ? LYS A 337 . ? 1_555 ? 13 AC9 1 ALA A 97 ? ALA A 318 . ? 1_555 ? # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 CB _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 ILE _pdbx_validate_rmsd_angle.auth_seq_id_1 352 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CA _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 ILE _pdbx_validate_rmsd_angle.auth_seq_id_2 352 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 C _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 ILE _pdbx_validate_rmsd_angle.auth_seq_id_3 352 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 98.30 _pdbx_validate_rmsd_angle.angle_target_value 111.60 _pdbx_validate_rmsd_angle.angle_deviation -13.30 _pdbx_validate_rmsd_angle.angle_standard_deviation 2.00 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ALA A 255 ? ? -171.76 63.84 2 1 SER A 285 ? ? 136.44 -43.26 3 1 TRP A 325 ? ? 79.18 -30.08 4 1 ALA A 353 ? ? -4.73 -46.13 5 1 GLU A 354 ? ? -54.26 36.84 6 1 ILE A 367 ? ? -67.95 26.78 7 1 LYS A 370 ? ? -150.35 -7.14 8 1 TYR A 371 ? ? 117.96 111.27 # _pdbx_phasing_dm.entry_id 3GQU _pdbx_phasing_dm.fom_acentric 0.470 _pdbx_phasing_dm.fom_centric 0.510 _pdbx_phasing_dm.fom 0.480 _pdbx_phasing_dm.reflns_acentric 16781 _pdbx_phasing_dm.reflns_centric 2923 _pdbx_phasing_dm.reflns 19704 # loop_ _pdbx_phasing_dm_shell.d_res_high _pdbx_phasing_dm_shell.d_res_low _pdbx_phasing_dm_shell.delta_phi_final _pdbx_phasing_dm_shell.delta_phi_initial _pdbx_phasing_dm_shell.fom_acentric _pdbx_phasing_dm_shell.fom_centric _pdbx_phasing_dm_shell.fom _pdbx_phasing_dm_shell.reflns_acentric _pdbx_phasing_dm_shell.reflns_centric _pdbx_phasing_dm_shell.reflns 5.600 23.683 ? ? 0.940 0.890 0.920 719 390 1109 3.500 5.600 ? ? 0.920 0.800 0.900 2526 645 3171 2.800 3.500 ? ? 0.640 0.520 0.620 3312 614 3926 2.500 2.800 ? ? 0.360 0.280 0.350 3361 516 3877 2.100 2.500 ? ? 0.250 0.230 0.250 5496 658 6154 2.000 2.100 ? ? 0.130 0.100 0.130 1367 100 1467 # _phasing.method SAD # _phasing_MAD.entry_id 3GQU _phasing_MAD.pdbx_d_res_high 1.96 _phasing_MAD.pdbx_d_res_low 23.68 _phasing_MAD.pdbx_reflns_acentric 16159 _phasing_MAD.pdbx_fom_acentric 0.307 _phasing_MAD.pdbx_reflns_centric 2922 _phasing_MAD.pdbx_fom_centric 0.179 _phasing_MAD.pdbx_reflns 19657 _phasing_MAD.pdbx_fom 0.284 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 222 ? A GLY 1 2 1 Y 1 A ARG 223 ? A ARG 2 3 1 Y 1 A MET 224 ? A MET 3 4 1 Y 1 A ARG 225 ? A ARG 4 5 1 Y 1 A ILE 226 ? A ILE 5 6 1 Y 1 A GLN 227 ? A GLN 6 7 1 Y 1 A GLU 228 ? A GLU 7 8 1 Y 1 A GLN 229 ? A GLN 8 9 1 Y 1 A SER 230 ? A SER 9 10 1 Y 1 A GLY 231 ? A GLY 10 11 1 Y 1 A ALA 232 ? A ALA 11 12 1 Y 1 A ARG 233 ? A ARG 12 13 1 Y 1 A ASP 234 ? A ASP 13 14 1 Y 1 A LYS 235 ? A LYS 14 15 1 Y 1 A MET 236 ? A MET 15 16 1 Y 1 A VAL 237 ? A VAL 16 17 1 Y 1 A ILE 238 ? A ILE 17 18 1 Y 1 A GLY 239 ? A GLY 18 19 1 Y 1 A ALA 240 ? A ALA 19 20 1 Y 1 A GLU 294 ? A GLU 73 21 1 Y 1 A LYS 295 ? A LYS 74 22 1 Y 1 A ALA 296 ? A ALA 75 23 1 Y 1 A LEU 297 ? A LEU 76 24 1 Y 1 A PHE 298 ? A PHE 77 25 1 Y 1 A ARG 299 ? A ARG 78 26 1 Y 1 A HIS 300 ? A HIS 79 27 1 Y 1 A LEU 301 ? A LEU 80 28 1 Y 1 A ARG 302 ? A ARG 81 29 1 Y 1 A THR 303 ? A THR 82 30 1 Y 1 A GLY 304 ? A GLY 83 31 1 Y 1 A ALA 305 ? A ALA 84 32 1 Y 1 A LYS 306 ? A LYS 85 33 1 Y 1 A PRO 307 ? A PRO 86 34 1 Y 1 A PRO 308 ? A PRO 87 35 1 Y 1 A LYS 309 ? A LYS 88 36 1 Y 1 A PRO 374 ? A PRO 153 37 1 Y 1 A PRO 375 ? A PRO 154 38 1 Y 1 A LYS 376 ? A LYS 155 39 1 Y 1 A ARG 377 ? A ARG 156 40 1 Y 1 A ARG 378 ? A ARG 157 41 1 Y 1 A LYS 379 ? A LYS 158 42 1 Y 1 A GLU 380 ? A GLU 159 43 1 Y 1 A GLU 381 ? A GLU 160 44 1 Y 1 A ARG 382 ? A ARG 161 45 1 Y 1 A LYS 383 ? A LYS 162 46 1 Y 1 A GLY 384 ? A GLY 163 47 1 Y 1 A ARG 385 ? A ARG 164 48 1 Y 1 A LYS 386 ? A LYS 165 49 1 Y 1 A PRO 387 ? A PRO 166 50 1 Y 1 A TRP 388 ? A TRP 167 51 1 Y 1 A LYS 389 ? A LYS 168 52 1 Y 1 A GLU 390 ? A GLU 169 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 GLN N N N N 74 GLN CA C N S 75 GLN C C N N 76 GLN O O N N 77 GLN CB C N N 78 GLN CG C N N 79 GLN CD C N N 80 GLN OE1 O N N 81 GLN NE2 N N N 82 GLN OXT O N N 83 GLN H H N N 84 GLN H2 H N N 85 GLN HA H N N 86 GLN HB2 H N N 87 GLN HB3 H N N 88 GLN HG2 H N N 89 GLN HG3 H N N 90 GLN HE21 H N N 91 GLN HE22 H N N 92 GLN HXT H N N 93 GLU N N N N 94 GLU CA C N S 95 GLU C C N N 96 GLU O O N N 97 GLU CB C N N 98 GLU CG C N N 99 GLU CD C N N 100 GLU OE1 O N N 101 GLU OE2 O N N 102 GLU OXT O N N 103 GLU H H N N 104 GLU H2 H N N 105 GLU HA H N N 106 GLU HB2 H N N 107 GLU HB3 H N N 108 GLU HG2 H N N 109 GLU HG3 H N N 110 GLU HE2 H N N 111 GLU HXT H N N 112 GLY N N N N 113 GLY CA C N N 114 GLY C C N N 115 GLY O O N N 116 GLY OXT O N N 117 GLY H H N N 118 GLY H2 H N N 119 GLY HA2 H N N 120 GLY HA3 H N N 121 GLY HXT H N N 122 HIS N N N N 123 HIS CA C N S 124 HIS C C N N 125 HIS O O N N 126 HIS CB C N N 127 HIS CG C Y N 128 HIS ND1 N Y N 129 HIS CD2 C Y N 130 HIS CE1 C Y N 131 HIS NE2 N Y N 132 HIS OXT O N N 133 HIS H H N N 134 HIS H2 H N N 135 HIS HA H N N 136 HIS HB2 H N N 137 HIS HB3 H N N 138 HIS HD1 H N N 139 HIS HD2 H N N 140 HIS HE1 H N N 141 HIS HE2 H N N 142 HIS HXT H N N 143 HOH O O N N 144 HOH H1 H N N 145 HOH H2 H N N 146 ILE N N N N 147 ILE CA C N S 148 ILE C C N N 149 ILE O O N N 150 ILE CB C N S 151 ILE CG1 C N N 152 ILE CG2 C N N 153 ILE CD1 C N N 154 ILE OXT O N N 155 ILE H H N N 156 ILE H2 H N N 157 ILE HA H N N 158 ILE HB H N N 159 ILE HG12 H N N 160 ILE HG13 H N N 161 ILE HG21 H N N 162 ILE HG22 H N N 163 ILE HG23 H N N 164 ILE HD11 H N N 165 ILE HD12 H N N 166 ILE HD13 H N N 167 ILE HXT H N N 168 IOD I I N N 169 LEU N N N N 170 LEU CA C N S 171 LEU C C N N 172 LEU O O N N 173 LEU CB C N N 174 LEU CG C N N 175 LEU CD1 C N N 176 LEU CD2 C N N 177 LEU OXT O N N 178 LEU H H N N 179 LEU H2 H N N 180 LEU HA H N N 181 LEU HB2 H N N 182 LEU HB3 H N N 183 LEU HG H N N 184 LEU HD11 H N N 185 LEU HD12 H N N 186 LEU HD13 H N N 187 LEU HD21 H N N 188 LEU HD22 H N N 189 LEU HD23 H N N 190 LEU HXT H N N 191 LYS N N N N 192 LYS CA C N S 193 LYS C C N N 194 LYS O O N N 195 LYS CB C N N 196 LYS CG C N N 197 LYS CD C N N 198 LYS CE C N N 199 LYS NZ N N N 200 LYS OXT O N N 201 LYS H H N N 202 LYS H2 H N N 203 LYS HA H N N 204 LYS HB2 H N N 205 LYS HB3 H N N 206 LYS HG2 H N N 207 LYS HG3 H N N 208 LYS HD2 H N N 209 LYS HD3 H N N 210 LYS HE2 H N N 211 LYS HE3 H N N 212 LYS HZ1 H N N 213 LYS HZ2 H N N 214 LYS HZ3 H N N 215 LYS HXT H N N 216 MET N N N N 217 MET CA C N S 218 MET C C N N 219 MET O O N N 220 MET CB C N N 221 MET CG C N N 222 MET SD S N N 223 MET CE C N N 224 MET OXT O N N 225 MET H H N N 226 MET H2 H N N 227 MET HA H N N 228 MET HB2 H N N 229 MET HB3 H N N 230 MET HG2 H N N 231 MET HG3 H N N 232 MET HE1 H N N 233 MET HE2 H N N 234 MET HE3 H N N 235 MET HXT H N N 236 PHE N N N N 237 PHE CA C N S 238 PHE C C N N 239 PHE O O N N 240 PHE CB C N N 241 PHE CG C Y N 242 PHE CD1 C Y N 243 PHE CD2 C Y N 244 PHE CE1 C Y N 245 PHE CE2 C Y N 246 PHE CZ C Y N 247 PHE OXT O N N 248 PHE H H N N 249 PHE H2 H N N 250 PHE HA H N N 251 PHE HB2 H N N 252 PHE HB3 H N N 253 PHE HD1 H N N 254 PHE HD2 H N N 255 PHE HE1 H N N 256 PHE HE2 H N N 257 PHE HZ H N N 258 PHE HXT H N N 259 PRO N N N N 260 PRO CA C N S 261 PRO C C N N 262 PRO O O N N 263 PRO CB C N N 264 PRO CG C N N 265 PRO CD C N N 266 PRO OXT O N N 267 PRO H H N N 268 PRO HA H N N 269 PRO HB2 H N N 270 PRO HB3 H N N 271 PRO HG2 H N N 272 PRO HG3 H N N 273 PRO HD2 H N N 274 PRO HD3 H N N 275 PRO HXT H N N 276 SER N N N N 277 SER CA C N S 278 SER C C N N 279 SER O O N N 280 SER CB C N N 281 SER OG O N N 282 SER OXT O N N 283 SER H H N N 284 SER H2 H N N 285 SER HA H N N 286 SER HB2 H N N 287 SER HB3 H N N 288 SER HG H N N 289 SER HXT H N N 290 THR N N N N 291 THR CA C N S 292 THR C C N N 293 THR O O N N 294 THR CB C N R 295 THR OG1 O N N 296 THR CG2 C N N 297 THR OXT O N N 298 THR H H N N 299 THR H2 H N N 300 THR HA H N N 301 THR HB H N N 302 THR HG1 H N N 303 THR HG21 H N N 304 THR HG22 H N N 305 THR HG23 H N N 306 THR HXT H N N 307 TRP N N N N 308 TRP CA C N S 309 TRP C C N N 310 TRP O O N N 311 TRP CB C N N 312 TRP CG C Y N 313 TRP CD1 C Y N 314 TRP CD2 C Y N 315 TRP NE1 N Y N 316 TRP CE2 C Y N 317 TRP CE3 C Y N 318 TRP CZ2 C Y N 319 TRP CZ3 C Y N 320 TRP CH2 C Y N 321 TRP OXT O N N 322 TRP H H N N 323 TRP H2 H N N 324 TRP HA H N N 325 TRP HB2 H N N 326 TRP HB3 H N N 327 TRP HD1 H N N 328 TRP HE1 H N N 329 TRP HE3 H N N 330 TRP HZ2 H N N 331 TRP HZ3 H N N 332 TRP HH2 H N N 333 TRP HXT H N N 334 TYR N N N N 335 TYR CA C N S 336 TYR C C N N 337 TYR O O N N 338 TYR CB C N N 339 TYR CG C Y N 340 TYR CD1 C Y N 341 TYR CD2 C Y N 342 TYR CE1 C Y N 343 TYR CE2 C Y N 344 TYR CZ C Y N 345 TYR OH O N N 346 TYR OXT O N N 347 TYR H H N N 348 TYR H2 H N N 349 TYR HA H N N 350 TYR HB2 H N N 351 TYR HB3 H N N 352 TYR HD1 H N N 353 TYR HD2 H N N 354 TYR HE1 H N N 355 TYR HE2 H N N 356 TYR HH H N N 357 TYR HXT H N N 358 VAL N N N N 359 VAL CA C N S 360 VAL C C N N 361 VAL O O N N 362 VAL CB C N N 363 VAL CG1 C N N 364 VAL CG2 C N N 365 VAL OXT O N N 366 VAL H H N N 367 VAL H2 H N N 368 VAL HA H N N 369 VAL HB H N N 370 VAL HG11 H N N 371 VAL HG12 H N N 372 VAL HG13 H N N 373 VAL HG21 H N N 374 VAL HG22 H N N 375 VAL HG23 H N N 376 VAL HXT H N N 377 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 GLN N CA sing N N 70 GLN N H sing N N 71 GLN N H2 sing N N 72 GLN CA C sing N N 73 GLN CA CB sing N N 74 GLN CA HA sing N N 75 GLN C O doub N N 76 GLN C OXT sing N N 77 GLN CB CG sing N N 78 GLN CB HB2 sing N N 79 GLN CB HB3 sing N N 80 GLN CG CD sing N N 81 GLN CG HG2 sing N N 82 GLN CG HG3 sing N N 83 GLN CD OE1 doub N N 84 GLN CD NE2 sing N N 85 GLN NE2 HE21 sing N N 86 GLN NE2 HE22 sing N N 87 GLN OXT HXT sing N N 88 GLU N CA sing N N 89 GLU N H sing N N 90 GLU N H2 sing N N 91 GLU CA C sing N N 92 GLU CA CB sing N N 93 GLU CA HA sing N N 94 GLU C O doub N N 95 GLU C OXT sing N N 96 GLU CB CG sing N N 97 GLU CB HB2 sing N N 98 GLU CB HB3 sing N N 99 GLU CG CD sing N N 100 GLU CG HG2 sing N N 101 GLU CG HG3 sing N N 102 GLU CD OE1 doub N N 103 GLU CD OE2 sing N N 104 GLU OE2 HE2 sing N N 105 GLU OXT HXT sing N N 106 GLY N CA sing N N 107 GLY N H sing N N 108 GLY N H2 sing N N 109 GLY CA C sing N N 110 GLY CA HA2 sing N N 111 GLY CA HA3 sing N N 112 GLY C O doub N N 113 GLY C OXT sing N N 114 GLY OXT HXT sing N N 115 HIS N CA sing N N 116 HIS N H sing N N 117 HIS N H2 sing N N 118 HIS CA C sing N N 119 HIS CA CB sing N N 120 HIS CA HA sing N N 121 HIS C O doub N N 122 HIS C OXT sing N N 123 HIS CB CG sing N N 124 HIS CB HB2 sing N N 125 HIS CB HB3 sing N N 126 HIS CG ND1 sing Y N 127 HIS CG CD2 doub Y N 128 HIS ND1 CE1 doub Y N 129 HIS ND1 HD1 sing N N 130 HIS CD2 NE2 sing Y N 131 HIS CD2 HD2 sing N N 132 HIS CE1 NE2 sing Y N 133 HIS CE1 HE1 sing N N 134 HIS NE2 HE2 sing N N 135 HIS OXT HXT sing N N 136 HOH O H1 sing N N 137 HOH O H2 sing N N 138 ILE N CA sing N N 139 ILE N H sing N N 140 ILE N H2 sing N N 141 ILE CA C sing N N 142 ILE CA CB sing N N 143 ILE CA HA sing N N 144 ILE C O doub N N 145 ILE C OXT sing N N 146 ILE CB CG1 sing N N 147 ILE CB CG2 sing N N 148 ILE CB HB sing N N 149 ILE CG1 CD1 sing N N 150 ILE CG1 HG12 sing N N 151 ILE CG1 HG13 sing N N 152 ILE CG2 HG21 sing N N 153 ILE CG2 HG22 sing N N 154 ILE CG2 HG23 sing N N 155 ILE CD1 HD11 sing N N 156 ILE CD1 HD12 sing N N 157 ILE CD1 HD13 sing N N 158 ILE OXT HXT sing N N 159 LEU N CA sing N N 160 LEU N H sing N N 161 LEU N H2 sing N N 162 LEU CA C sing N N 163 LEU CA CB sing N N 164 LEU CA HA sing N N 165 LEU C O doub N N 166 LEU C OXT sing N N 167 LEU CB CG sing N N 168 LEU CB HB2 sing N N 169 LEU CB HB3 sing N N 170 LEU CG CD1 sing N N 171 LEU CG CD2 sing N N 172 LEU CG HG sing N N 173 LEU CD1 HD11 sing N N 174 LEU CD1 HD12 sing N N 175 LEU CD1 HD13 sing N N 176 LEU CD2 HD21 sing N N 177 LEU CD2 HD22 sing N N 178 LEU CD2 HD23 sing N N 179 LEU OXT HXT sing N N 180 LYS N CA sing N N 181 LYS N H sing N N 182 LYS N H2 sing N N 183 LYS CA C sing N N 184 LYS CA CB sing N N 185 LYS CA HA sing N N 186 LYS C O doub N N 187 LYS C OXT sing N N 188 LYS CB CG sing N N 189 LYS CB HB2 sing N N 190 LYS CB HB3 sing N N 191 LYS CG CD sing N N 192 LYS CG HG2 sing N N 193 LYS CG HG3 sing N N 194 LYS CD CE sing N N 195 LYS CD HD2 sing N N 196 LYS CD HD3 sing N N 197 LYS CE NZ sing N N 198 LYS CE HE2 sing N N 199 LYS CE HE3 sing N N 200 LYS NZ HZ1 sing N N 201 LYS NZ HZ2 sing N N 202 LYS NZ HZ3 sing N N 203 LYS OXT HXT sing N N 204 MET N CA sing N N 205 MET N H sing N N 206 MET N H2 sing N N 207 MET CA C sing N N 208 MET CA CB sing N N 209 MET CA HA sing N N 210 MET C O doub N N 211 MET C OXT sing N N 212 MET CB CG sing N N 213 MET CB HB2 sing N N 214 MET CB HB3 sing N N 215 MET CG SD sing N N 216 MET CG HG2 sing N N 217 MET CG HG3 sing N N 218 MET SD CE sing N N 219 MET CE HE1 sing N N 220 MET CE HE2 sing N N 221 MET CE HE3 sing N N 222 MET OXT HXT sing N N 223 PHE N CA sing N N 224 PHE N H sing N N 225 PHE N H2 sing N N 226 PHE CA C sing N N 227 PHE CA CB sing N N 228 PHE CA HA sing N N 229 PHE C O doub N N 230 PHE C OXT sing N N 231 PHE CB CG sing N N 232 PHE CB HB2 sing N N 233 PHE CB HB3 sing N N 234 PHE CG CD1 doub Y N 235 PHE CG CD2 sing Y N 236 PHE CD1 CE1 sing Y N 237 PHE CD1 HD1 sing N N 238 PHE CD2 CE2 doub Y N 239 PHE CD2 HD2 sing N N 240 PHE CE1 CZ doub Y N 241 PHE CE1 HE1 sing N N 242 PHE CE2 CZ sing Y N 243 PHE CE2 HE2 sing N N 244 PHE CZ HZ sing N N 245 PHE OXT HXT sing N N 246 PRO N CA sing N N 247 PRO N CD sing N N 248 PRO N H sing N N 249 PRO CA C sing N N 250 PRO CA CB sing N N 251 PRO CA HA sing N N 252 PRO C O doub N N 253 PRO C OXT sing N N 254 PRO CB CG sing N N 255 PRO CB HB2 sing N N 256 PRO CB HB3 sing N N 257 PRO CG CD sing N N 258 PRO CG HG2 sing N N 259 PRO CG HG3 sing N N 260 PRO CD HD2 sing N N 261 PRO CD HD3 sing N N 262 PRO OXT HXT sing N N 263 SER N CA sing N N 264 SER N H sing N N 265 SER N H2 sing N N 266 SER CA C sing N N 267 SER CA CB sing N N 268 SER CA HA sing N N 269 SER C O doub N N 270 SER C OXT sing N N 271 SER CB OG sing N N 272 SER CB HB2 sing N N 273 SER CB HB3 sing N N 274 SER OG HG sing N N 275 SER OXT HXT sing N N 276 THR N CA sing N N 277 THR N H sing N N 278 THR N H2 sing N N 279 THR CA C sing N N 280 THR CA CB sing N N 281 THR CA HA sing N N 282 THR C O doub N N 283 THR C OXT sing N N 284 THR CB OG1 sing N N 285 THR CB CG2 sing N N 286 THR CB HB sing N N 287 THR OG1 HG1 sing N N 288 THR CG2 HG21 sing N N 289 THR CG2 HG22 sing N N 290 THR CG2 HG23 sing N N 291 THR OXT HXT sing N N 292 TRP N CA sing N N 293 TRP N H sing N N 294 TRP N H2 sing N N 295 TRP CA C sing N N 296 TRP CA CB sing N N 297 TRP CA HA sing N N 298 TRP C O doub N N 299 TRP C OXT sing N N 300 TRP CB CG sing N N 301 TRP CB HB2 sing N N 302 TRP CB HB3 sing N N 303 TRP CG CD1 doub Y N 304 TRP CG CD2 sing Y N 305 TRP CD1 NE1 sing Y N 306 TRP CD1 HD1 sing N N 307 TRP CD2 CE2 doub Y N 308 TRP CD2 CE3 sing Y N 309 TRP NE1 CE2 sing Y N 310 TRP NE1 HE1 sing N N 311 TRP CE2 CZ2 sing Y N 312 TRP CE3 CZ3 doub Y N 313 TRP CE3 HE3 sing N N 314 TRP CZ2 CH2 doub Y N 315 TRP CZ2 HZ2 sing N N 316 TRP CZ3 CH2 sing Y N 317 TRP CZ3 HZ3 sing N N 318 TRP CH2 HH2 sing N N 319 TRP OXT HXT sing N N 320 TYR N CA sing N N 321 TYR N H sing N N 322 TYR N H2 sing N N 323 TYR CA C sing N N 324 TYR CA CB sing N N 325 TYR CA HA sing N N 326 TYR C O doub N N 327 TYR C OXT sing N N 328 TYR CB CG sing N N 329 TYR CB HB2 sing N N 330 TYR CB HB3 sing N N 331 TYR CG CD1 doub Y N 332 TYR CG CD2 sing Y N 333 TYR CD1 CE1 sing Y N 334 TYR CD1 HD1 sing N N 335 TYR CD2 CE2 doub Y N 336 TYR CD2 HD2 sing N N 337 TYR CE1 CZ doub Y N 338 TYR CE1 HE1 sing N N 339 TYR CE2 CZ sing Y N 340 TYR CE2 HE2 sing N N 341 TYR CZ OH sing N N 342 TYR OH HH sing N N 343 TYR OXT HXT sing N N 344 VAL N CA sing N N 345 VAL N H sing N N 346 VAL N H2 sing N N 347 VAL CA C sing N N 348 VAL CA CB sing N N 349 VAL CA HA sing N N 350 VAL C O doub N N 351 VAL C OXT sing N N 352 VAL CB CG1 sing N N 353 VAL CB CG2 sing N N 354 VAL CB HB sing N N 355 VAL CG1 HG11 sing N N 356 VAL CG1 HG12 sing N N 357 VAL CG1 HG13 sing N N 358 VAL CG2 HG21 sing N N 359 VAL CG2 HG22 sing N N 360 VAL CG2 HG23 sing N N 361 VAL OXT HXT sing N N 362 # _atom_sites.entry_id 3GQU _atom_sites.fract_transf_matrix[1][1] 0.013586 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013586 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008751 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C I N O S # loop_