HEADER FLAVOPROTEIN 24-MAR-09 3GR3 TITLE CRYSTAL STRUCTURE OF A NITROREDUCTASE-LIKE FAMILY PROTEIN (PNBA, TITLE 2 BH06130) FROM BARTONELLA HENSELAE STR. HOUSTON-1 AT 1.45 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: NITROREDUCTASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BARTONELLA HENSELAE STR. HOUSTON-1; SOURCE 3 ORGANISM_COMMON: ROCHALIMAEA HENSELAE; SOURCE 4 ORGANISM_TAXID: 283166; SOURCE 5 GENE: BH06130, PNBA, YP_033442.1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, PSI-2, FLAVOPROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 6 01-FEB-23 3GR3 1 REMARK SEQADV REVDAT 5 24-JUL-19 3GR3 1 REMARK LINK REVDAT 4 25-OCT-17 3GR3 1 REMARK REVDAT 3 13-JUL-11 3GR3 1 VERSN REVDAT 2 23-MAR-11 3GR3 1 HEADER TITLE KEYWDS REVDAT 1 07-APR-09 3GR3 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF NITROREDUCTASE-LIKE FAMILY PROTEIN JRNL TITL 2 (YP_033442.1) FROM BARTONELLA HENSELAE HOUSTON-1 AT 1.45 A JRNL TITL 3 RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0053 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.09 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 82611 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.147 REMARK 3 R VALUE (WORKING SET) : 0.146 REMARK 3 FREE R VALUE : 0.170 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4131 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.45 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.49 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5673 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.04 REMARK 3 BIN R VALUE (WORKING SET) : 0.2570 REMARK 3 BIN FREE R VALUE SET COUNT : 277 REMARK 3 BIN FREE R VALUE : 0.2710 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3605 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 122 REMARK 3 SOLVENT ATOMS : 532 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 12.71 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 9.34 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.19000 REMARK 3 B22 (A**2) : 0.17000 REMARK 3 B33 (A**2) : -0.36000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.059 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.061 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.038 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.068 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.973 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.958 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4097 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2898 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5595 ; 1.658 ; 1.988 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7074 ; 0.967 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 539 ; 5.649 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 186 ;34.143 ;23.118 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 736 ;12.111 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 34 ;18.314 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 599 ; 0.109 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4585 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 859 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2426 ; 1.642 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 969 ; 0.463 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3957 ; 2.738 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1671 ; 4.127 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1599 ; 5.954 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 24 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 16 REMARK 3 ORIGIN FOR THE GROUP (A): 12.3160 47.0910 21.9600 REMARK 3 T TENSOR REMARK 3 T11: 0.0970 T22: 0.0313 REMARK 3 T33: 0.0417 T12: 0.0067 REMARK 3 T13: 0.0049 T23: 0.0069 REMARK 3 L TENSOR REMARK 3 L11: 1.3848 L22: 3.3102 REMARK 3 L33: 1.9329 L12: -0.4510 REMARK 3 L13: -0.3487 L23: -0.8023 REMARK 3 S TENSOR REMARK 3 S11: 0.0131 S12: 0.0973 S13: -0.0898 REMARK 3 S21: -0.2195 S22: -0.0951 S23: -0.0879 REMARK 3 S31: 0.2244 S32: 0.0766 S33: 0.0820 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 17 A 33 REMARK 3 ORIGIN FOR THE GROUP (A): -0.4460 56.0810 15.9290 REMARK 3 T TENSOR REMARK 3 T11: 0.0859 T22: 0.0497 REMARK 3 T33: 0.0648 T12: 0.0119 REMARK 3 T13: -0.0037 T23: 0.0019 REMARK 3 L TENSOR REMARK 3 L11: 1.0636 L22: 1.0518 REMARK 3 L33: 2.4098 L12: 0.2096 REMARK 3 L13: -0.0686 L23: -0.8635 REMARK 3 S TENSOR REMARK 3 S11: -0.0593 S12: 0.0947 S13: -0.0375 REMARK 3 S21: -0.1838 S22: 0.0792 S23: 0.1166 REMARK 3 S31: 0.1179 S32: -0.2708 S33: -0.0199 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 34 A 57 REMARK 3 ORIGIN FOR THE GROUP (A): -3.8800 54.3470 32.2460 REMARK 3 T TENSOR REMARK 3 T11: 0.0745 T22: 0.0384 REMARK 3 T33: 0.0612 T12: 0.0007 REMARK 3 T13: 0.0022 T23: 0.0130 REMARK 3 L TENSOR REMARK 3 L11: 0.5544 L22: 0.5564 REMARK 3 L33: 1.1107 L12: -0.1293 REMARK 3 L13: 0.3483 L23: -0.5975 REMARK 3 S TENSOR REMARK 3 S11: -0.0008 S12: -0.0161 S13: 0.0136 REMARK 3 S21: 0.0049 S22: 0.0533 S23: 0.1030 REMARK 3 S31: -0.0123 S32: -0.1011 S33: -0.0525 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 58 A 74 REMARK 3 ORIGIN FOR THE GROUP (A): -3.1270 75.4580 17.5270 REMARK 3 T TENSOR REMARK 3 T11: 0.1402 T22: 0.0570 REMARK 3 T33: 0.1530 T12: 0.0314 REMARK 3 T13: 0.0163 T23: 0.0383 REMARK 3 L TENSOR REMARK 3 L11: 2.4727 L22: 8.3345 REMARK 3 L33: 0.8609 L12: 3.5720 REMARK 3 L13: 1.2876 L23: 1.2325 REMARK 3 S TENSOR REMARK 3 S11: -0.0842 S12: -0.0249 S13: 0.2063 REMARK 3 S21: -0.1069 S22: 0.0937 S23: 0.4464 REMARK 3 S31: -0.0926 S32: -0.0778 S33: -0.0095 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 75 A 82 REMARK 3 ORIGIN FOR THE GROUP (A): 3.4520 77.4300 33.4360 REMARK 3 T TENSOR REMARK 3 T11: 0.2689 T22: 0.0797 REMARK 3 T33: 0.1515 T12: 0.0020 REMARK 3 T13: -0.0099 T23: -0.0108 REMARK 3 L TENSOR REMARK 3 L11: 1.6684 L22: 5.4435 REMARK 3 L33: 4.0699 L12: -2.2218 REMARK 3 L13: 0.6449 L23: -3.9386 REMARK 3 S TENSOR REMARK 3 S11: -0.2660 S12: -0.1437 S13: 0.0356 REMARK 3 S21: 0.4633 S22: -0.0264 S23: -0.2614 REMARK 3 S31: -0.2544 S32: 0.2038 S33: 0.2923 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 83 A 91 REMARK 3 ORIGIN FOR THE GROUP (A): 17.5470 72.4960 36.9360 REMARK 3 T TENSOR REMARK 3 T11: 0.2662 T22: 0.1507 REMARK 3 T33: 0.3017 T12: -0.0874 REMARK 3 T13: -0.0544 T23: -0.0083 REMARK 3 L TENSOR REMARK 3 L11: 10.0303 L22: 0.3917 REMARK 3 L33: 3.9545 L12: -1.8217 REMARK 3 L13: 0.9172 L23: 0.3147 REMARK 3 S TENSOR REMARK 3 S11: -0.2161 S12: -0.4643 S13: 0.9019 REMARK 3 S21: -0.0058 S22: 0.1418 S23: -0.1779 REMARK 3 S31: -0.4501 S32: 0.4322 S33: 0.0743 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 92 A 109 REMARK 3 ORIGIN FOR THE GROUP (A): 21.3080 70.1520 22.7760 REMARK 3 T TENSOR REMARK 3 T11: 0.1493 T22: 0.0934 REMARK 3 T33: 0.1521 T12: -0.0496 REMARK 3 T13: -0.0059 T23: 0.0323 REMARK 3 L TENSOR REMARK 3 L11: 1.2865 L22: 2.0494 REMARK 3 L33: 3.4501 L12: 0.6654 REMARK 3 L13: -1.1865 L23: -1.7576 REMARK 3 S TENSOR REMARK 3 S11: 0.0766 S12: -0.0713 S13: 0.0719 REMARK 3 S21: 0.1399 S22: -0.2796 S23: -0.1499 REMARK 3 S31: -0.2634 S32: 0.4133 S33: 0.2029 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 110 A 123 REMARK 3 ORIGIN FOR THE GROUP (A): 13.2200 78.5640 16.1120 REMARK 3 T TENSOR REMARK 3 T11: 0.0984 T22: 0.0864 REMARK 3 T33: 0.1682 T12: -0.0162 REMARK 3 T13: -0.0178 T23: 0.0320 REMARK 3 L TENSOR REMARK 3 L11: 8.6117 L22: 3.3740 REMARK 3 L33: 3.1001 L12: 3.8776 REMARK 3 L13: -5.0672 L23: -2.7156 REMARK 3 S TENSOR REMARK 3 S11: 0.1137 S12: -0.4159 S13: 0.1728 REMARK 3 S21: 0.0441 S22: -0.0831 S23: -0.1066 REMARK 3 S31: -0.0643 S32: 0.2297 S33: -0.0306 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 124 A 175 REMARK 3 ORIGIN FOR THE GROUP (A): 2.0710 60.9750 28.8580 REMARK 3 T TENSOR REMARK 3 T11: 0.0782 T22: 0.0203 REMARK 3 T33: 0.0467 T12: 0.0069 REMARK 3 T13: 0.0081 T23: 0.0009 REMARK 3 L TENSOR REMARK 3 L11: 1.0046 L22: 0.7607 REMARK 3 L33: 1.3873 L12: 0.0903 REMARK 3 L13: 0.2363 L23: -0.7195 REMARK 3 S TENSOR REMARK 3 S11: 0.0172 S12: -0.0228 S13: 0.0940 REMARK 3 S21: 0.0733 S22: 0.0073 S23: 0.0466 REMARK 3 S31: -0.1222 S32: -0.1231 S33: -0.0245 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 176 A 192 REMARK 3 ORIGIN FOR THE GROUP (A): -7.0900 72.8000 31.1070 REMARK 3 T TENSOR REMARK 3 T11: 0.1769 T22: 0.0800 REMARK 3 T33: 0.1508 T12: 0.0631 REMARK 3 T13: 0.0602 T23: 0.0225 REMARK 3 L TENSOR REMARK 3 L11: 1.6441 L22: 2.2720 REMARK 3 L33: 4.7128 L12: 0.8860 REMARK 3 L13: -1.6804 L23: -1.5189 REMARK 3 S TENSOR REMARK 3 S11: 0.0640 S12: -0.0231 S13: 0.1134 REMARK 3 S21: 0.1982 S22: 0.1527 S23: 0.2022 REMARK 3 S31: -0.3575 S32: -0.3807 S33: -0.2168 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 193 A 210 REMARK 3 ORIGIN FOR THE GROUP (A): 8.0820 61.1630 16.2470 REMARK 3 T TENSOR REMARK 3 T11: 0.0890 T22: 0.0187 REMARK 3 T33: 0.0637 T12: 0.0081 REMARK 3 T13: 0.0104 T23: 0.0088 REMARK 3 L TENSOR REMARK 3 L11: 1.8879 L22: 1.1852 REMARK 3 L33: 3.1082 L12: 0.7382 REMARK 3 L13: -0.9346 L23: -0.1572 REMARK 3 S TENSOR REMARK 3 S11: 0.0162 S12: 0.1304 S13: 0.0102 REMARK 3 S21: -0.1593 S22: 0.0152 S23: -0.0852 REMARK 3 S31: -0.1608 S32: 0.0616 S33: -0.0314 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 211 A 229 REMARK 3 ORIGIN FOR THE GROUP (A): 25.7520 53.7810 37.3750 REMARK 3 T TENSOR REMARK 3 T11: 0.0808 T22: 0.1355 REMARK 3 T33: 0.1206 T12: -0.0336 REMARK 3 T13: -0.0142 T23: 0.0548 REMARK 3 L TENSOR REMARK 3 L11: 0.6683 L22: 1.9627 REMARK 3 L33: 3.9362 L12: -0.3018 REMARK 3 L13: 0.2150 L23: -2.5337 REMARK 3 S TENSOR REMARK 3 S11: 0.0024 S12: -0.0599 S13: 0.0029 REMARK 3 S21: 0.0983 S22: -0.2606 S23: -0.2116 REMARK 3 S31: -0.1502 S32: 0.5019 S33: 0.2582 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 4 B 15 REMARK 3 ORIGIN FOR THE GROUP (A): 6.0760 40.9460 28.1470 REMARK 3 T TENSOR REMARK 3 T11: 0.1049 T22: 0.0212 REMARK 3 T33: 0.0571 T12: -0.0059 REMARK 3 T13: 0.0097 T23: 0.0005 REMARK 3 L TENSOR REMARK 3 L11: 1.5773 L22: 2.0391 REMARK 3 L33: 4.3875 L12: -0.1091 REMARK 3 L13: 0.0655 L23: 0.8023 REMARK 3 S TENSOR REMARK 3 S11: 0.0030 S12: 0.1632 S13: -0.0891 REMARK 3 S21: -0.2203 S22: -0.0137 S23: -0.1188 REMARK 3 S31: 0.2325 S32: 0.0667 S33: 0.0107 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 16 B 32 REMARK 3 ORIGIN FOR THE GROUP (A): 16.3880 38.5410 41.9620 REMARK 3 T TENSOR REMARK 3 T11: 0.0849 T22: 0.0334 REMARK 3 T33: 0.0598 T12: 0.0066 REMARK 3 T13: -0.0151 T23: 0.0115 REMARK 3 L TENSOR REMARK 3 L11: 2.6648 L22: 1.5790 REMARK 3 L33: 1.5344 L12: 0.4786 REMARK 3 L13: -1.3087 L23: -0.6405 REMARK 3 S TENSOR REMARK 3 S11: -0.0437 S12: -0.1745 S13: -0.2085 REMARK 3 S21: -0.0174 S22: -0.0446 S23: -0.1845 REMARK 3 S31: 0.1356 S32: 0.1833 S33: 0.0883 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 33 B 57 REMARK 3 ORIGIN FOR THE GROUP (A): 19.2870 54.4580 35.3520 REMARK 3 T TENSOR REMARK 3 T11: 0.0656 T22: 0.0686 REMARK 3 T33: 0.0770 T12: -0.0152 REMARK 3 T13: -0.0120 T23: 0.0271 REMARK 3 L TENSOR REMARK 3 L11: 0.1770 L22: 0.8269 REMARK 3 L33: 1.5483 L12: -0.2301 REMARK 3 L13: 0.3472 L23: -0.8680 REMARK 3 S TENSOR REMARK 3 S11: 0.0011 S12: -0.0231 S13: 0.0280 REMARK 3 S21: 0.0213 S22: -0.1057 S23: -0.1177 REMARK 3 S31: -0.0790 S32: 0.1820 S33: 0.1046 REMARK 3 REMARK 3 TLS GROUP : 16 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 58 B 75 REMARK 3 ORIGIN FOR THE GROUP (A): 16.3720 46.0070 59.9360 REMARK 3 T TENSOR REMARK 3 T11: 0.1091 T22: 0.0559 REMARK 3 T33: 0.0361 T12: -0.0025 REMARK 3 T13: -0.0155 T23: 0.0018 REMARK 3 L TENSOR REMARK 3 L11: 2.9095 L22: 1.0026 REMARK 3 L33: 3.5390 L12: -1.0223 REMARK 3 L13: -1.1494 L23: 0.3012 REMARK 3 S TENSOR REMARK 3 S11: -0.0574 S12: -0.1068 S13: 0.1131 REMARK 3 S21: 0.1086 S22: 0.0208 S23: -0.0534 REMARK 3 S31: -0.1916 S32: 0.0216 S33: 0.0366 REMARK 3 REMARK 3 TLS GROUP : 17 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 76 B 81 REMARK 3 ORIGIN FOR THE GROUP (A): 8.3940 60.1990 56.1950 REMARK 3 T TENSOR REMARK 3 T11: 0.3683 T22: 0.1909 REMARK 3 T33: 0.1843 T12: -0.0093 REMARK 3 T13: -0.0173 T23: -0.0296 REMARK 3 L TENSOR REMARK 3 L11: 2.6594 L22: 4.9983 REMARK 3 L33: 3.1838 L12: -3.1612 REMARK 3 L13: 2.4343 L23: -1.8063 REMARK 3 S TENSOR REMARK 3 S11: -0.2340 S12: -0.2317 S13: -0.1591 REMARK 3 S21: 0.2719 S22: 0.3335 S23: 0.2836 REMARK 3 S31: -0.1669 S32: -0.1422 S33: -0.0995 REMARK 3 REMARK 3 TLS GROUP : 18 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 82 B 95 REMARK 3 ORIGIN FOR THE GROUP (A): -6.1830 58.6300 48.2080 REMARK 3 T TENSOR REMARK 3 T11: 0.1670 T22: 0.1307 REMARK 3 T33: 0.1257 T12: 0.0134 REMARK 3 T13: 0.0732 T23: -0.0303 REMARK 3 L TENSOR REMARK 3 L11: 4.0355 L22: 3.8694 REMARK 3 L33: 1.3481 L12: 0.8405 REMARK 3 L13: 1.5264 L23: -0.1568 REMARK 3 S TENSOR REMARK 3 S11: 0.0126 S12: -0.4267 S13: 0.4169 REMARK 3 S21: 0.4524 S22: -0.0435 S23: 0.4761 REMARK 3 S31: -0.2093 S32: -0.1392 S33: 0.0309 REMARK 3 REMARK 3 TLS GROUP : 19 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 96 B 109 REMARK 3 ORIGIN FOR THE GROUP (A): -6.3300 42.7860 51.1440 REMARK 3 T TENSOR REMARK 3 T11: 0.1247 T22: 0.0982 REMARK 3 T33: 0.1054 T12: -0.0078 REMARK 3 T13: 0.0439 T23: 0.0322 REMARK 3 L TENSOR REMARK 3 L11: 3.4858 L22: 3.8531 REMARK 3 L33: 2.2689 L12: -1.8021 REMARK 3 L13: -0.4848 L23: 0.4107 REMARK 3 S TENSOR REMARK 3 S11: -0.1087 S12: -0.2717 S13: -0.0474 REMARK 3 S21: 0.1924 S22: 0.2321 S23: 0.2333 REMARK 3 S31: -0.1267 S32: -0.1623 S33: -0.1234 REMARK 3 REMARK 3 TLS GROUP : 20 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 110 B 121 REMARK 3 ORIGIN FOR THE GROUP (A): -1.2790 41.5700 61.1220 REMARK 3 T TENSOR REMARK 3 T11: 0.1027 T22: 0.2537 REMARK 3 T33: 0.1053 T12: 0.0467 REMARK 3 T13: 0.0469 T23: 0.0521 REMARK 3 L TENSOR REMARK 3 L11: 9.6421 L22: 7.0601 REMARK 3 L33: 6.7090 L12: 4.1159 REMARK 3 L13: -0.2644 L23: 0.6510 REMARK 3 S TENSOR REMARK 3 S11: 0.0071 S12: -0.9389 S13: 0.0468 REMARK 3 S21: 0.2584 S22: -0.1407 S23: 0.4968 REMARK 3 S31: -0.0258 S32: -0.6623 S33: 0.1336 REMARK 3 REMARK 3 TLS GROUP : 21 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 122 B 142 REMARK 3 ORIGIN FOR THE GROUP (A): 14.5740 51.3160 48.0380 REMARK 3 T TENSOR REMARK 3 T11: 0.1068 T22: 0.1145 REMARK 3 T33: 0.0925 T12: -0.0237 REMARK 3 T13: -0.0322 T23: 0.0402 REMARK 3 L TENSOR REMARK 3 L11: 1.3093 L22: 1.0553 REMARK 3 L33: 1.7334 L12: -1.1065 REMARK 3 L13: 0.5836 L23: -0.5929 REMARK 3 S TENSOR REMARK 3 S11: -0.1103 S12: -0.0981 S13: 0.1251 REMARK 3 S21: 0.1198 S22: -0.0311 S23: -0.1838 REMARK 3 S31: -0.2057 S32: 0.1037 S33: 0.1414 REMARK 3 REMARK 3 TLS GROUP : 22 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 143 B 166 REMARK 3 ORIGIN FOR THE GROUP (A): 11.2590 53.0460 36.1750 REMARK 3 T TENSOR REMARK 3 T11: 0.0537 T22: 0.0053 REMARK 3 T33: 0.0212 T12: -0.0118 REMARK 3 T13: -0.0010 T23: 0.0049 REMARK 3 L TENSOR REMARK 3 L11: 1.3747 L22: 3.2139 REMARK 3 L33: 1.2194 L12: -0.3713 REMARK 3 L13: 0.0786 L23: -0.9262 REMARK 3 S TENSOR REMARK 3 S11: 0.0182 S12: -0.0021 S13: 0.0948 REMARK 3 S21: 0.0910 S22: -0.0499 S23: -0.0442 REMARK 3 S31: -0.0833 S32: 0.0613 S33: 0.0317 REMARK 3 REMARK 3 TLS GROUP : 23 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 167 B 211 REMARK 3 ORIGIN FOR THE GROUP (A): 12.7410 48.6980 48.7460 REMARK 3 T TENSOR REMARK 3 T11: 0.0778 T22: 0.0379 REMARK 3 T33: 0.0374 T12: -0.0194 REMARK 3 T13: -0.0168 T23: 0.0110 REMARK 3 L TENSOR REMARK 3 L11: 1.1709 L22: 1.6620 REMARK 3 L33: 1.6358 L12: 0.0730 REMARK 3 L13: 0.1898 L23: -0.4719 REMARK 3 S TENSOR REMARK 3 S11: 0.0062 S12: -0.1313 S13: 0.0469 REMARK 3 S21: 0.2073 S22: -0.1022 S23: -0.0683 REMARK 3 S31: -0.1647 S32: 0.1009 S33: 0.0960 REMARK 3 REMARK 3 TLS GROUP : 24 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 212 B 227 REMARK 3 ORIGIN FOR THE GROUP (A): -10.2720 53.5590 30.2570 REMARK 3 T TENSOR REMARK 3 T11: 0.0621 T22: 0.0657 REMARK 3 T33: 0.1035 T12: -0.0058 REMARK 3 T13: -0.0089 T23: 0.0240 REMARK 3 L TENSOR REMARK 3 L11: 1.8583 L22: 4.5260 REMARK 3 L33: 6.8026 L12: -1.0590 REMARK 3 L13: 1.8168 L23: -5.2275 REMARK 3 S TENSOR REMARK 3 S11: 0.0799 S12: 0.0937 S13: -0.0287 REMARK 3 S21: -0.1538 S22: 0.2376 S23: 0.4149 REMARK 3 S31: 0.1379 S32: -0.2402 S33: -0.3175 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. ATOM RECORD CONTAINS RESIDUAL B FACTORS REMARK 3 ONLY. 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE REMARK 3 ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 TO ACCOUNT FOR THE REMARK 3 REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 4. REMARK 3 CHLORIDE IONS (CL) FROM THE PROTEIN BUFFER HAVE BEEN MODELED REMARK 3 INTO THE SOLVENT STRUCTURE. 5. ACETATE (ACT) AND ETHYLENE GLYCOL REMARK 3 (EDO) FROM THE CRYSTALLIZATION/CRYOPROTECTANT SOLUTIONS HAVE REMARK 3 BEEN MODELED INTO THE SOLVENT STRUCTURE. 6. ELECTRON DENSITY REMARK 3 RESEMBLING CITRATE PLUS AN ADDITIONAL MOIETY HAS BEEN MODELED AT REMARK 3 THE PUTATIVE ACTIVE SITE OF EACH MONOMER AS AN UNIDENTIFIED REMARK 3 LIGAND (UNL). 7. A FLAVIN MONONUCLEOTIDE (FMN) IS MODELED IN REMARK 3 EACH SUBUNIT. THE PLANARITY RESTRAINTS ON THE FMN ISOALLOXAZINE REMARK 3 MOIETY WERE RELAXED TO ALLOW BUTTERFLY BENDING ALONG THE N5-N10 REMARK 3 VIRTUAL AXIS TO BETTER FIT THE OBSERVED ELECTRON DENSITY. 8. TLS REMARK 3 GROUPS WERE ASSIGNED WITH THE AID OF THE TLSMD SERVER. REMARK 4 REMARK 4 3GR3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-MAR-09. REMARK 100 THE DEPOSITION ID IS D_1000052208. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-DEC-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91162,0.97978 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : FLAT COLLIMATING MIRROR, TOROID REMARK 200 FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.2.5 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 82675 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 28.094 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.09100 REMARK 200 R SYM (I) : 0.09100 REMARK 200 FOR THE DATA SET : 4.6690 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.65500 REMARK 200 R SYM FOR SHELL (I) : 0.65500 REMARK 200 FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2000M AMMONIUM ACETATE, 30.1360% REMARK 280 POLYETHYLENE GLYCOL 4000, 0.1M CITRIC ACID PH 5.0, NANODROP', REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.53200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.97250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 47.38900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 51.97250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.53200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 47.38900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: CRYSTAL PACKING AND STATIC LIGHT SCATTERING ANALYSIS REMARK 300 SUPPORT THE ASSIGNMENT OF A DIMER AS A SIGNIFICANT OLIGOMERIZATION REMARK 300 STATE IN SOLUTION. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13430 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18160 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -69.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MSE A 1 REMARK 465 ALA A 2 REMARK 465 ASP A 3 REMARK 465 GLY B 0 REMARK 465 MSE B 1 REMARK 465 ALA B 2 REMARK 465 ASP B 3 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 29 CD OE1 OE2 REMARK 470 LYS A 58 CD CE NZ REMARK 470 GLN A 61 CD OE1 NE2 REMARK 470 GLN A 87 CG CD OE1 NE2 REMARK 470 ARG A 89 NE CZ NH1 NH2 REMARK 470 LYS A 105 CE NZ REMARK 470 LYS A 111 CG CD CE NZ REMARK 470 LYS A 226 CE NZ REMARK 470 GLU B 78 CG CD OE1 OE2 REMARK 470 GLN B 87 CD OE1 NE2 REMARK 470 ARG B 89 NE CZ NH1 NH2 REMARK 470 LYS B 111 CG CD CE NZ REMARK 470 GLU B 115 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 139 O HOH A 437 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 139 CB - CG - OD1 ANGL. DEV. = 7.4 DEGREES REMARK 500 ASP A 139 CB - CG - OD2 ANGL. DEV. = -5.4 DEGREES REMARK 500 CYS A 195 CA - CB - SG ANGL. DEV. = 7.2 DEGREES REMARK 500 MSE A 204 CG - SE - CE ANGL. DEV. = 17.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 143 -164.65 -112.47 REMARK 500 LYS A 226 -35.08 -131.84 REMARK 500 GLU B 143 -164.43 -112.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMN A 230 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNL A 231 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 232 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 233 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 234 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 235 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 236 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMN B 230 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNL B 231 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 232 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 233 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 234 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 235 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 236 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 237 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 390524 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 SEQUENCE THIS CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3GR3 A 1 229 UNP Q6G3X2 Q6G3X2_BARHE 1 229 DBREF 3GR3 B 1 229 UNP Q6G3X2 Q6G3X2_BARHE 1 229 SEQADV 3GR3 GLY A 0 UNP Q6G3X2 EXPRESSION TAG SEQADV 3GR3 GLY B 0 UNP Q6G3X2 EXPRESSION TAG SEQRES 1 A 230 GLY MSE ALA ASP ALA PRO ILE ASP ILE PHE GLN SER ILE SEQRES 2 A 230 LEU SER ARG LYS SER ILE ARG ALA PHE THR ASP GLN PRO SEQRES 3 A 230 VAL THR GLN GLU THR ILE ARG GLU ILE LEU LYS LEU ALA SEQRES 4 A 230 ALA ARG ALA PRO SER GLY THR ASN LEU GLN PRO TRP GLN SEQRES 5 A 230 VAL ILE VAL LEU THR GLY LYS ILE LEU GLN LYS VAL GLY SEQRES 6 A 230 GLN GLU LEU SER GLN LEU VAL LEU SER GLY ILE LYS GLY SEQRES 7 A 230 GLU ARG GLU TYR HIS TYR TYR PRO ARG GLN TRP ARG GLU SEQRES 8 A 230 PRO TYR LEU SER ARG ARG ARG LYS VAL GLY LEU ASP LEU SEQRES 9 A 230 TYR LYS SER LEU GLY ILE GLN LYS GLY ASP GLN GLU LYS SEQRES 10 A 230 MSE LEU HIS GLN LYS ALA LYS ASN PHE LEU PHE TYR GLY SEQRES 11 A 230 ALA PRO VAL GLY LEU LEU PHE THR ILE ASP HIS ASP MSE SEQRES 12 A 230 GLU MSE GLY SER TRP LEU ASP LEU GLY MSE PHE MSE GLN SEQRES 13 A 230 THR ILE MSE LEU ALA ALA ARG GLY PHE GLY LEU ASP THR SEQRES 14 A 230 CYS ALA GLN ALA ALA PHE ALA ASP TYR HIS LYS GLN ILE SEQRES 15 A 230 ARG SER LEU LEU SER VAL PRO SER ASP ARG HIS ILE ILE SEQRES 16 A 230 CYS GLY MSE ALA LEU GLY TYR ARG ASP MSE ASN ALA PRO SEQRES 17 A 230 GLU ASN ASN PHE GLU THR GLU ARG GLU PRO ILE ASP ASN SEQRES 18 A 230 PHE VAL HIS PHE ILE LYS SER TYR PRO SEQRES 1 B 230 GLY MSE ALA ASP ALA PRO ILE ASP ILE PHE GLN SER ILE SEQRES 2 B 230 LEU SER ARG LYS SER ILE ARG ALA PHE THR ASP GLN PRO SEQRES 3 B 230 VAL THR GLN GLU THR ILE ARG GLU ILE LEU LYS LEU ALA SEQRES 4 B 230 ALA ARG ALA PRO SER GLY THR ASN LEU GLN PRO TRP GLN SEQRES 5 B 230 VAL ILE VAL LEU THR GLY LYS ILE LEU GLN LYS VAL GLY SEQRES 6 B 230 GLN GLU LEU SER GLN LEU VAL LEU SER GLY ILE LYS GLY SEQRES 7 B 230 GLU ARG GLU TYR HIS TYR TYR PRO ARG GLN TRP ARG GLU SEQRES 8 B 230 PRO TYR LEU SER ARG ARG ARG LYS VAL GLY LEU ASP LEU SEQRES 9 B 230 TYR LYS SER LEU GLY ILE GLN LYS GLY ASP GLN GLU LYS SEQRES 10 B 230 MSE LEU HIS GLN LYS ALA LYS ASN PHE LEU PHE TYR GLY SEQRES 11 B 230 ALA PRO VAL GLY LEU LEU PHE THR ILE ASP HIS ASP MSE SEQRES 12 B 230 GLU MSE GLY SER TRP LEU ASP LEU GLY MSE PHE MSE GLN SEQRES 13 B 230 THR ILE MSE LEU ALA ALA ARG GLY PHE GLY LEU ASP THR SEQRES 14 B 230 CYS ALA GLN ALA ALA PHE ALA ASP TYR HIS LYS GLN ILE SEQRES 15 B 230 ARG SER LEU LEU SER VAL PRO SER ASP ARG HIS ILE ILE SEQRES 16 B 230 CYS GLY MSE ALA LEU GLY TYR ARG ASP MSE ASN ALA PRO SEQRES 17 B 230 GLU ASN ASN PHE GLU THR GLU ARG GLU PRO ILE ASP ASN SEQRES 18 B 230 PHE VAL HIS PHE ILE LYS SER TYR PRO MODRES 3GR3 MSE A 117 MET SELENOMETHIONINE MODRES 3GR3 MSE A 142 MET SELENOMETHIONINE MODRES 3GR3 MSE A 144 MET SELENOMETHIONINE MODRES 3GR3 MSE A 152 MET SELENOMETHIONINE MODRES 3GR3 MSE A 154 MET SELENOMETHIONINE MODRES 3GR3 MSE A 158 MET SELENOMETHIONINE MODRES 3GR3 MSE A 197 MET SELENOMETHIONINE MODRES 3GR3 MSE A 204 MET SELENOMETHIONINE MODRES 3GR3 MSE B 117 MET SELENOMETHIONINE MODRES 3GR3 MSE B 142 MET SELENOMETHIONINE MODRES 3GR3 MSE B 144 MET SELENOMETHIONINE MODRES 3GR3 MSE B 152 MET SELENOMETHIONINE MODRES 3GR3 MSE B 154 MET SELENOMETHIONINE MODRES 3GR3 MSE B 158 MET SELENOMETHIONINE MODRES 3GR3 MSE B 197 MET SELENOMETHIONINE MODRES 3GR3 MSE B 204 MET SELENOMETHIONINE HET MSE A 117 8 HET MSE A 142 8 HET MSE A 144 13 HET MSE A 152 8 HET MSE A 154 8 HET MSE A 158 8 HET MSE A 197 8 HET MSE A 204 13 HET MSE B 117 8 HET MSE B 142 8 HET MSE B 144 13 HET MSE B 152 8 HET MSE B 154 8 HET MSE B 158 8 HET MSE B 197 8 HET MSE B 204 13 HET FMN A 230 31 HET UNL A 231 11 HET CL A 232 1 HET EDO A 233 4 HET EDO A 234 4 HET EDO A 235 4 HET ACT A 236 4 HET FMN B 230 31 HET UNL B 231 11 HET CL B 232 1 HET EDO B 233 4 HET EDO B 234 4 HET EDO B 235 4 HET EDO B 236 4 HET ACT B 237 4 HETNAM MSE SELENOMETHIONINE HETNAM FMN FLAVIN MONONUCLEOTIDE HETNAM UNL UNKNOWN LIGAND HETNAM CL CHLORIDE ION HETNAM EDO 1,2-ETHANEDIOL HETNAM ACT ACETATE ION HETSYN FMN RIBOFLAVIN MONOPHOSPHATE HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 16(C5 H11 N O2 SE) FORMUL 3 FMN 2(C17 H21 N4 O9 P) FORMUL 5 CL 2(CL 1-) FORMUL 6 EDO 7(C2 H6 O2) FORMUL 9 ACT 2(C2 H3 O2 1-) FORMUL 18 HOH *532(H2 O) HELIX 1 1 ASP A 7 ARG A 15 1 9 HELIX 2 2 THR A 27 ALA A 39 1 13 HELIX 3 3 SER A 43 LEU A 47 5 5 HELIX 4 4 THR A 56 SER A 73 1 18 HELIX 5 5 PRO A 91 GLY A 108 1 18 HELIX 6 6 ASP A 113 ASN A 124 1 12 HELIX 7 7 PHE A 125 ALA A 130 5 6 HELIX 8 8 MSE A 144 GLY A 163 1 20 HELIX 9 9 ALA A 172 ASP A 176 5 5 HELIX 10 10 TYR A 177 SER A 186 1 10 HELIX 11 11 ALA A 206 ASN A 210 5 5 HELIX 12 12 PRO A 217 ASN A 220 5 4 HELIX 13 13 ASP B 7 ARG B 15 1 9 HELIX 14 14 THR B 27 ALA B 39 1 13 HELIX 15 15 SER B 43 LEU B 47 5 5 HELIX 16 16 THR B 56 GLY B 74 1 19 HELIX 17 17 PRO B 91 GLY B 108 1 18 HELIX 18 18 ASP B 113 ASN B 124 1 12 HELIX 19 19 PHE B 125 ALA B 130 5 6 HELIX 20 20 MSE B 144 PHE B 164 1 21 HELIX 21 21 ALA B 172 ASP B 176 5 5 HELIX 22 22 TYR B 177 SER B 186 1 10 HELIX 23 23 ALA B 206 ASN B 210 5 5 HELIX 24 24 PRO B 217 PHE B 221 1 5 SHEET 1 A 5 ASP A 167 GLN A 171 0 SHEET 2 A 5 ARG A 191 GLY A 200 -1 O GLY A 200 N ASP A 167 SHEET 3 A 5 VAL A 132 ASP A 139 -1 N PHE A 136 O ILE A 194 SHEET 4 A 5 GLN A 51 LEU A 55 -1 N LEU A 55 O GLY A 133 SHEET 5 A 5 VAL B 222 ILE B 225 1 O ILE B 225 N VAL A 54 SHEET 1 B 5 VAL A 222 ILE A 225 0 SHEET 2 B 5 GLN B 51 LEU B 55 1 O VAL B 54 N ILE A 225 SHEET 3 B 5 VAL B 132 ASP B 139 -1 O GLY B 133 N LEU B 55 SHEET 4 B 5 ARG B 191 GLY B 200 -1 O CYS B 195 N PHE B 136 SHEET 5 B 5 ASP B 167 GLN B 171 -1 N GLN B 171 O GLY B 196 LINK C LYS A 116 N MSE A 117 1555 1555 1.32 LINK C MSE A 117 N LEU A 118 1555 1555 1.33 LINK C ASP A 141 N MSE A 142 1555 1555 1.33 LINK C MSE A 142 N GLU A 143 1555 1555 1.34 LINK C GLU A 143 N MSE A 144 1555 1555 1.33 LINK C MSE A 144 N GLY A 145 1555 1555 1.33 LINK C GLY A 151 N MSE A 152 1555 1555 1.33 LINK C MSE A 152 N PHE A 153 1555 1555 1.33 LINK C PHE A 153 N MSE A 154 1555 1555 1.33 LINK C MSE A 154 N GLN A 155 1555 1555 1.34 LINK C ILE A 157 N MSE A 158 1555 1555 1.32 LINK C MSE A 158 N LEU A 159 1555 1555 1.35 LINK C GLY A 196 N MSE A 197 1555 1555 1.31 LINK C MSE A 197 N ALA A 198 1555 1555 1.32 LINK C ASP A 203 N MSE A 204 1555 1555 1.32 LINK C MSE A 204 N ASN A 205 1555 1555 1.35 LINK C LYS B 116 N MSE B 117 1555 1555 1.33 LINK C MSE B 117 N LEU B 118 1555 1555 1.34 LINK C ASP B 141 N MSE B 142 1555 1555 1.33 LINK C MSE B 142 N GLU B 143 1555 1555 1.33 LINK C GLU B 143 N MSE B 144 1555 1555 1.33 LINK C MSE B 144 N GLY B 145 1555 1555 1.32 LINK C GLY B 151 N MSE B 152 1555 1555 1.32 LINK C MSE B 152 N PHE B 153 1555 1555 1.32 LINK C PHE B 153 N MSE B 154 1555 1555 1.33 LINK C MSE B 154 N GLN B 155 1555 1555 1.34 LINK C ILE B 157 N MSE B 158 1555 1555 1.31 LINK C MSE B 158 N LEU B 159 1555 1555 1.32 LINK C GLY B 196 N MSE B 197 1555 1555 1.35 LINK C MSE B 197 N ALA B 198 1555 1555 1.34 LINK C ASP B 203 N MSE B 204 1555 1555 1.33 LINK C MSE B 204 N ASN B 205 1555 1555 1.33 CISPEP 1 GLU A 90 PRO A 91 0 3.48 CISPEP 2 TYR A 228 PRO A 229 0 2.11 CISPEP 3 GLU B 90 PRO B 91 0 2.00 CISPEP 4 TYR B 228 PRO B 229 0 1.42 SITE 1 AC1 23 ARG A 15 LYS A 16 SER A 17 ARG A 19 SITE 2 AC1 23 ASN A 124 TYR A 128 ALA A 170 GLN A 171 SITE 3 AC1 23 ALA A 172 ALA A 173 THR A 213 ARG A 215 SITE 4 AC1 23 UNL A 231 EDO A 233 HOH A 247 HOH A 255 SITE 5 AC1 23 HOH A 262 HOH A 299 PRO B 42 SER B 43 SITE 6 AC1 23 GLY B 44 ASN B 46 MSE B 152 SITE 1 AC2 9 ARG A 79 TYR A 84 LYS A 121 ALA A 173 SITE 2 AC2 9 ASP A 176 FMN A 230 EDO A 233 GLY B 44 SITE 3 AC2 9 THR B 45 SITE 1 AC3 3 ARG A 79 TYR A 83 TYR A 84 SITE 1 AC4 7 ARG A 19 GLY A 100 FMN A 230 UNL A 231 SITE 2 AC4 7 HOH A 256 HOH A 304 HOH A 378 SITE 1 AC5 8 LEU A 13 ARG A 15 LYS A 16 HOH A 262 SITE 2 AC5 8 HOH A 299 HOH A 302 HOH A 355 HOH B 285 SITE 1 AC6 6 GLY A 44 GLY A 145 SER A 146 ASP A 149 SITE 2 AC6 6 HOH A 409 TYR B 83 SITE 1 AC7 2 GLY A 163 HOH A 418 SITE 1 AC8 23 PRO A 42 SER A 43 GLY A 44 ASN A 46 SITE 2 AC8 23 MSE A 152 ARG B 15 LYS B 16 SER B 17 SITE 3 AC8 23 ARG B 19 ASN B 124 TYR B 128 ALA B 170 SITE 4 AC8 23 GLN B 171 ALA B 172 ALA B 173 THR B 213 SITE 5 AC8 23 ARG B 215 UNL B 231 EDO B 234 HOH B 339 SITE 6 AC8 23 HOH B 358 HOH B 449 HOH B 451 SITE 1 AC9 8 GLY A 44 THR A 45 ARG B 79 TYR B 84 SITE 2 AC9 8 ALA B 173 ASP B 176 FMN B 230 EDO B 234 SITE 1 BC1 3 ARG B 79 TYR B 83 TYR B 84 SITE 1 BC2 6 TYR A 83 GLY B 44 GLY B 145 SER B 146 SITE 2 BC2 6 ASP B 149 HOH B 401 SITE 1 BC3 7 ARG B 19 GLY B 100 FMN B 230 UNL B 231 SITE 2 BC3 7 HOH B 254 HOH B 426 HOH B 432 SITE 1 BC4 9 ASP A 219 ARG B 32 GLU B 214 ARG B 215 SITE 2 BC4 9 GLU B 216 PRO B 217 HOH B 266 HOH B 328 SITE 3 BC4 9 HOH B 527 SITE 1 BC5 7 GLU A 66 HOH A 252 ARG B 162 GLY B 165 SITE 2 BC5 7 ARG B 202 MSE B 204 HOH B 492 SITE 1 BC6 4 PHE A 9 HOH A 388 GLU B 33 HOH B 475 CRYST1 47.064 94.778 103.945 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021248 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010551 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009620 0.00000