HEADER HYDROLASE 26-MAR-09 3GRO TITLE HUMAN PALMITOYL-PROTEIN THIOESTERASE 1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PALMITOYL-PROTEIN THIOESTERASE 1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PPT-1, PALMITOYL-PROTEIN HYDROLASE 1; COMPND 5 EC: 3.1.2.22; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PPT1, PPT; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: SF9; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PFHMSP-LIC-C KEYWDS NEURONAL CEROID LIPOFUSCINOSIS, NEURODEGENERATION, STRUCTURAL KEYWDS 2 GENOMICS CONSORTIUM, SGC, DISEASE MUTATION, DISULFIDE BOND, KEYWDS 3 GLYCOPROTEIN, HYDROLASE, LYSOSOME, POLYMORPHISM, SENSORY KEYWDS 4 TRANSDUCTION, VISION EXPDTA X-RAY DIFFRACTION AUTHOR E.DOBROVETSKY,A.SEITOVA,Y.TONG,W.TEMPEL,A.DONG,C.H.ARROWSMITH, AUTHOR 2 A.M.EDWARDS,C.BOUNTRA,J.WEIGELT,A.BOCHKAREV,D.COSSAR,H.PARK, AUTHOR 3 STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 5 06-NOV-24 3GRO 1 REMARK REVDAT 4 22-NOV-23 3GRO 1 REMARK REVDAT 3 06-SEP-23 3GRO 1 SEQADV LINK REVDAT 2 01-NOV-17 3GRO 1 REMARK REVDAT 1 07-APR-09 3GRO 0 JRNL AUTH E.DOBROVETSKY,A.SEITOVA,Y.TONG,W.TEMPEL,A.DONG, JRNL AUTH 2 C.H.ARROWSMITH,A.M.EDWARDS,C.BOUNTRA,J.WEIGELT,A.BOCHKAREV, JRNL AUTH 3 D.COSSAR,H.PARK JRNL TITL HUMAN PALMITOYL-PROTEIN THIOESTERASE 1 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.53 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0088 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.53 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 21649 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : THIN SHELLS REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.695 REMARK 3 FREE R VALUE TEST SET COUNT : 1233 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.53 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.60 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1428 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.79 REMARK 3 BIN R VALUE (WORKING SET) : 0.3070 REMARK 3 BIN FREE R VALUE SET COUNT : 126 REMARK 3 BIN FREE R VALUE : 0.3710 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4235 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 24 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.21 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.10000 REMARK 3 B22 (A**2) : -1.06100 REMARK 3 B33 (A**2) : -0.04000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.581 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.281 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.202 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.194 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.940 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.914 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4342 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2878 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5902 ; 1.081 ; 1.950 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7023 ; 0.861 ; 3.003 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 550 ; 5.644 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 192 ;36.039 ;24.792 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 693 ;14.941 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;17.237 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 651 ; 0.064 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4887 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 862 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2744 ; 1.022 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1119 ; 0.131 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4402 ; 1.801 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1598 ; 1.045 ; 2.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1500 ; 1.613 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. U VALUES: REFINED INDIVIDUALLY. PROGRAMS REMARK 3 COOT, MOLPROBITY HAVE ALSO BEEN USED IN REFINEMENT. REMARK 4 REMARK 4 3GRO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-MAR-09. REMARK 100 THE DEPOSITION ID IS D_1000052229. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-MAR-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97940 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21818 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.530 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 8.800 REMARK 200 R MERGE (I) : 0.17000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 6.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.53 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.62 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.20 REMARK 200 R MERGE FOR SHELL (I) : 0.99300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1EI9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 24% PEG 3350, 0.2M AMMONIUM SULFATE, REMARK 280 0.1M SODIUM CACODYLATE. CRYOPROTECTANT: 9 PARTS RESERVOIR + 1 REMARK 280 PART 80% GLYCEROL, PH 5.4, VAPOR DIFFUSION, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.85500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.58250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.32100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 64.58250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.85500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.32100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2080 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.8 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 21 REMARK 465 ARG A 22 REMARK 465 ALA A 23 REMARK 465 LEU A 24 REMARK 465 GLN A 25 REMARK 465 HIS A 26 REMARK 465 LEU A 27 REMARK 465 ASP A 28 REMARK 465 PRO A 29 REMARK 465 GLU A 307 REMARK 465 PHE A 308 REMARK 465 VAL A 309 REMARK 465 GLU A 310 REMARK 465 HIS A 311 REMARK 465 HIS A 312 REMARK 465 HIS A 313 REMARK 465 HIS A 314 REMARK 465 HIS A 315 REMARK 465 HIS A 316 REMARK 465 HIS A 317 REMARK 465 HIS A 318 REMARK 465 ALA B 21 REMARK 465 ARG B 22 REMARK 465 ALA B 23 REMARK 465 LEU B 24 REMARK 465 GLN B 25 REMARK 465 HIS B 26 REMARK 465 LEU B 27 REMARK 465 ASP B 28 REMARK 465 PRO B 29 REMARK 465 PRO B 30 REMARK 465 GLY B 306 REMARK 465 GLU B 307 REMARK 465 PHE B 308 REMARK 465 VAL B 309 REMARK 465 GLU B 310 REMARK 465 HIS B 311 REMARK 465 HIS B 312 REMARK 465 HIS B 313 REMARK 465 HIS B 314 REMARK 465 HIS B 315 REMARK 465 HIS B 316 REMARK 465 HIS B 317 REMARK 465 HIS B 318 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 55 NZ REMARK 470 LYS A 56 CG CD CE NZ REMARK 470 LYS A 60 CG CD CE NZ REMARK 470 LYS A 61 CD CE NZ REMARK 470 LYS A 74 CD CE NZ REMARK 470 GLN A 107 CG CD OE1 NE2 REMARK 470 LYS A 174 CG CD CE NZ REMARK 470 LYS A 191 CE NZ REMARK 470 LYS A 223 CE NZ REMARK 470 LYS A 253 CE NZ REMARK 470 GLU A 294 CG CD OE1 OE2 REMARK 470 GLU A 295 CD OE1 OE2 REMARK 470 TYR A 298 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS B 55 NZ REMARK 470 LYS B 56 CG CD CE NZ REMARK 470 LYS B 60 CG CD CE NZ REMARK 470 LYS B 61 CG CD CE NZ REMARK 470 LYS B 74 CG CD CE NZ REMARK 470 LYS B 101 CG CD CE NZ REMARK 470 GLN B 106 CG CD OE1 NE2 REMARK 470 LYS B 174 CE NZ REMARK 470 GLU B 178 CG CD OE1 OE2 REMARK 470 LYS B 191 CE NZ REMARK 470 ASP B 193 CG OD1 OD2 REMARK 470 GLU B 213 CG CD OE1 OE2 REMARK 470 LYS B 217 CD CE NZ REMARK 470 LYS B 224 CD CE NZ REMARK 470 ARG B 248 NE CZ NH1 NH2 REMARK 470 LYS B 253 CG CD CE NZ REMARK 470 GLU B 254 CG CD OE1 OE2 REMARK 470 LYS B 272 CE NZ REMARK 470 GLU B 273 CG CD OE1 OE2 REMARK 470 GLU B 294 CG CD OE1 OE2 REMARK 470 GLU B 295 CG CD OE1 OE2 REMARK 470 TYR B 298 CG CD1 CD2 CE1 CE2 CZ OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 50 -95.69 -123.75 REMARK 500 SER A 115 -133.24 51.62 REMARK 500 ILE A 134 -61.04 -104.28 REMARK 500 PHE A 201 -73.48 -129.00 REMARK 500 ALA A 252 40.22 -141.38 REMARK 500 LYS A 253 -55.62 -122.04 REMARK 500 LEU A 290 14.47 58.59 REMARK 500 CYS B 46 30.77 -142.57 REMARK 500 SER B 50 -103.01 -125.25 REMARK 500 ILE B 72 78.37 -105.64 REMARK 500 SER B 115 -129.40 55.30 REMARK 500 ILE B 134 -71.19 -98.94 REMARK 500 SER B 156 31.60 -149.13 REMARK 500 LYS B 191 54.62 -119.18 REMARK 500 PHE B 201 -69.55 -132.05 REMARK 500 ALA B 252 34.74 -142.43 REMARK 500 REMARK 500 REMARK: NULL DBREF 3GRO A 22 306 UNP P50897 PPT1_HUMAN 22 306 DBREF 3GRO B 22 306 UNP P50897 PPT1_HUMAN 22 306 SEQADV 3GRO ALA A 21 UNP P50897 EXPRESSION TAG SEQADV 3GRO GLU A 307 UNP P50897 EXPRESSION TAG SEQADV 3GRO PHE A 308 UNP P50897 EXPRESSION TAG SEQADV 3GRO VAL A 309 UNP P50897 EXPRESSION TAG SEQADV 3GRO GLU A 310 UNP P50897 EXPRESSION TAG SEQADV 3GRO HIS A 311 UNP P50897 EXPRESSION TAG SEQADV 3GRO HIS A 312 UNP P50897 EXPRESSION TAG SEQADV 3GRO HIS A 313 UNP P50897 EXPRESSION TAG SEQADV 3GRO HIS A 314 UNP P50897 EXPRESSION TAG SEQADV 3GRO HIS A 315 UNP P50897 EXPRESSION TAG SEQADV 3GRO HIS A 316 UNP P50897 EXPRESSION TAG SEQADV 3GRO HIS A 317 UNP P50897 EXPRESSION TAG SEQADV 3GRO HIS A 318 UNP P50897 EXPRESSION TAG SEQADV 3GRO ALA B 21 UNP P50897 EXPRESSION TAG SEQADV 3GRO GLU B 307 UNP P50897 EXPRESSION TAG SEQADV 3GRO PHE B 308 UNP P50897 EXPRESSION TAG SEQADV 3GRO VAL B 309 UNP P50897 EXPRESSION TAG SEQADV 3GRO GLU B 310 UNP P50897 EXPRESSION TAG SEQADV 3GRO HIS B 311 UNP P50897 EXPRESSION TAG SEQADV 3GRO HIS B 312 UNP P50897 EXPRESSION TAG SEQADV 3GRO HIS B 313 UNP P50897 EXPRESSION TAG SEQADV 3GRO HIS B 314 UNP P50897 EXPRESSION TAG SEQADV 3GRO HIS B 315 UNP P50897 EXPRESSION TAG SEQADV 3GRO HIS B 316 UNP P50897 EXPRESSION TAG SEQADV 3GRO HIS B 317 UNP P50897 EXPRESSION TAG SEQADV 3GRO HIS B 318 UNP P50897 EXPRESSION TAG SEQRES 1 A 298 ALA ARG ALA LEU GLN HIS LEU ASP PRO PRO ALA PRO LEU SEQRES 2 A 298 PRO LEU VAL ILE TRP HIS GLY MSE GLY ASP SER CYS CYS SEQRES 3 A 298 ASN PRO LEU SER MSE GLY ALA ILE LYS LYS MSE VAL GLU SEQRES 4 A 298 LYS LYS ILE PRO GLY ILE TYR VAL LEU SER LEU GLU ILE SEQRES 5 A 298 GLY LYS THR LEU MSE GLU ASP VAL GLU ASN SER PHE PHE SEQRES 6 A 298 LEU ASN VAL ASN SER GLN VAL THR THR VAL CYS GLN ALA SEQRES 7 A 298 LEU ALA LYS ASP PRO LYS LEU GLN GLN GLY TYR ASN ALA SEQRES 8 A 298 MSE GLY PHE SER GLN GLY GLY GLN PHE LEU ARG ALA VAL SEQRES 9 A 298 ALA GLN ARG CYS PRO SER PRO PRO MSE ILE ASN LEU ILE SEQRES 10 A 298 SER VAL GLY GLY GLN HIS GLN GLY VAL PHE GLY LEU PRO SEQRES 11 A 298 ARG CYS PRO GLY GLU SER SER HIS ILE CYS ASP PHE ILE SEQRES 12 A 298 ARG LYS THR LEU ASN ALA GLY ALA TYR SER LYS VAL VAL SEQRES 13 A 298 GLN GLU ARG LEU VAL GLN ALA GLU TYR TRP HIS ASP PRO SEQRES 14 A 298 ILE LYS GLU ASP VAL TYR ARG ASN HIS SER ILE PHE LEU SEQRES 15 A 298 ALA ASP ILE ASN GLN GLU ARG GLY ILE ASN GLU SER TYR SEQRES 16 A 298 LYS LYS ASN LEU MSE ALA LEU LYS LYS PHE VAL MSE VAL SEQRES 17 A 298 LYS PHE LEU ASN ASP SER ILE VAL ASP PRO VAL ASP SER SEQRES 18 A 298 GLU TRP PHE GLY PHE TYR ARG SER GLY GLN ALA LYS GLU SEQRES 19 A 298 THR ILE PRO LEU GLN GLU THR SER LEU TYR THR GLN ASP SEQRES 20 A 298 ARG LEU GLY LEU LYS GLU MSE ASP ASN ALA GLY GLN LEU SEQRES 21 A 298 VAL PHE LEU ALA THR GLU GLY ASP HIS LEU GLN LEU SER SEQRES 22 A 298 GLU GLU TRP PHE TYR ALA HIS ILE ILE PRO PHE LEU GLY SEQRES 23 A 298 GLU PHE VAL GLU HIS HIS HIS HIS HIS HIS HIS HIS SEQRES 1 B 298 ALA ARG ALA LEU GLN HIS LEU ASP PRO PRO ALA PRO LEU SEQRES 2 B 298 PRO LEU VAL ILE TRP HIS GLY MSE GLY ASP SER CYS CYS SEQRES 3 B 298 ASN PRO LEU SER MSE GLY ALA ILE LYS LYS MSE VAL GLU SEQRES 4 B 298 LYS LYS ILE PRO GLY ILE TYR VAL LEU SER LEU GLU ILE SEQRES 5 B 298 GLY LYS THR LEU MSE GLU ASP VAL GLU ASN SER PHE PHE SEQRES 6 B 298 LEU ASN VAL ASN SER GLN VAL THR THR VAL CYS GLN ALA SEQRES 7 B 298 LEU ALA LYS ASP PRO LYS LEU GLN GLN GLY TYR ASN ALA SEQRES 8 B 298 MSE GLY PHE SER GLN GLY GLY GLN PHE LEU ARG ALA VAL SEQRES 9 B 298 ALA GLN ARG CYS PRO SER PRO PRO MSE ILE ASN LEU ILE SEQRES 10 B 298 SER VAL GLY GLY GLN HIS GLN GLY VAL PHE GLY LEU PRO SEQRES 11 B 298 ARG CYS PRO GLY GLU SER SER HIS ILE CYS ASP PHE ILE SEQRES 12 B 298 ARG LYS THR LEU ASN ALA GLY ALA TYR SER LYS VAL VAL SEQRES 13 B 298 GLN GLU ARG LEU VAL GLN ALA GLU TYR TRP HIS ASP PRO SEQRES 14 B 298 ILE LYS GLU ASP VAL TYR ARG ASN HIS SER ILE PHE LEU SEQRES 15 B 298 ALA ASP ILE ASN GLN GLU ARG GLY ILE ASN GLU SER TYR SEQRES 16 B 298 LYS LYS ASN LEU MSE ALA LEU LYS LYS PHE VAL MSE VAL SEQRES 17 B 298 LYS PHE LEU ASN ASP SER ILE VAL ASP PRO VAL ASP SER SEQRES 18 B 298 GLU TRP PHE GLY PHE TYR ARG SER GLY GLN ALA LYS GLU SEQRES 19 B 298 THR ILE PRO LEU GLN GLU THR SER LEU TYR THR GLN ASP SEQRES 20 B 298 ARG LEU GLY LEU LYS GLU MSE ASP ASN ALA GLY GLN LEU SEQRES 21 B 298 VAL PHE LEU ALA THR GLU GLY ASP HIS LEU GLN LEU SER SEQRES 22 B 298 GLU GLU TRP PHE TYR ALA HIS ILE ILE PRO PHE LEU GLY SEQRES 23 B 298 GLU PHE VAL GLU HIS HIS HIS HIS HIS HIS HIS HIS MODRES 3GRO MSE A 41 MET SELENOMETHIONINE MODRES 3GRO MSE A 51 MET SELENOMETHIONINE MODRES 3GRO MSE A 57 MET SELENOMETHIONINE MODRES 3GRO MSE A 77 MET SELENOMETHIONINE MODRES 3GRO MSE A 112 MET SELENOMETHIONINE MODRES 3GRO MSE A 133 MET SELENOMETHIONINE MODRES 3GRO MSE A 220 MET SELENOMETHIONINE MODRES 3GRO MSE A 227 MET SELENOMETHIONINE MODRES 3GRO MSE A 274 MET SELENOMETHIONINE MODRES 3GRO MSE B 41 MET SELENOMETHIONINE MODRES 3GRO MSE B 51 MET SELENOMETHIONINE MODRES 3GRO MSE B 57 MET SELENOMETHIONINE MODRES 3GRO MSE B 77 MET SELENOMETHIONINE MODRES 3GRO MSE B 112 MET SELENOMETHIONINE MODRES 3GRO MSE B 133 MET SELENOMETHIONINE MODRES 3GRO MSE B 220 MET SELENOMETHIONINE MODRES 3GRO MSE B 227 MET SELENOMETHIONINE MODRES 3GRO MSE B 274 MET SELENOMETHIONINE HET MSE A 41 8 HET MSE A 51 8 HET MSE A 57 8 HET MSE A 77 8 HET MSE A 112 8 HET MSE A 133 8 HET MSE A 220 8 HET MSE A 227 8 HET MSE A 274 8 HET MSE B 41 8 HET MSE B 51 8 HET MSE B 57 8 HET MSE B 77 8 HET MSE B 112 8 HET MSE B 133 8 HET MSE B 220 8 HET MSE B 227 8 HET MSE B 274 8 HET UNX A 3 1 HET UNX A 4 1 HET UNX B 1 1 HET UNX B 2 1 HETNAM MSE SELENOMETHIONINE HETNAM UNX UNKNOWN ATOM OR ION FORMUL 1 MSE 18(C5 H11 N O2 SE) FORMUL 3 UNX 4(X) FORMUL 7 HOH *24(H2 O) HELIX 1 1 SER A 50 ILE A 62 1 13 HELIX 2 2 THR A 75 LEU A 86 1 12 HELIX 3 3 ASN A 87 ASP A 102 1 16 HELIX 4 4 PRO A 103 GLN A 106 5 4 HELIX 5 5 SER A 115 CYS A 128 1 14 HELIX 6 6 SER A 156 ALA A 171 1 16 HELIX 7 7 SER A 173 GLU A 178 1 6 HELIX 8 8 LEU A 180 TRP A 186 5 7 HELIX 9 9 LYS A 191 SER A 199 1 9 HELIX 10 10 PHE A 201 ASN A 206 1 6 HELIX 11 11 ASN A 212 ALA A 221 1 10 HELIX 12 12 PRO A 238 PHE A 244 5 7 HELIX 13 13 PRO A 257 GLU A 260 5 4 HELIX 14 14 THR A 261 GLN A 266 1 6 HELIX 15 15 GLY A 270 ALA A 277 1 8 HELIX 16 16 SER A 293 ILE A 301 1 9 HELIX 17 17 ILE A 302 GLY A 306 5 5 HELIX 18 18 SER B 50 ILE B 62 1 13 HELIX 19 19 THR B 75 LEU B 86 1 12 HELIX 20 20 ASN B 87 ASP B 102 1 16 HELIX 21 21 PRO B 103 GLN B 106 5 4 HELIX 22 22 GLN B 116 CYS B 128 1 13 HELIX 23 23 SER B 156 ALA B 171 1 16 HELIX 24 24 SER B 173 GLU B 178 1 6 HELIX 25 25 LEU B 180 TYR B 185 1 6 HELIX 26 26 LYS B 191 SER B 199 1 9 HELIX 27 27 PHE B 201 ASN B 206 1 6 HELIX 28 28 ASN B 212 MSE B 220 1 9 HELIX 29 29 PRO B 238 PHE B 244 5 7 HELIX 30 30 PRO B 257 GLU B 260 5 4 HELIX 31 31 THR B 261 GLN B 266 1 6 HELIX 32 32 GLY B 270 ALA B 277 1 8 HELIX 33 33 SER B 293 ILE B 301 1 9 HELIX 34 34 ILE B 302 LEU B 305 5 4 SHEET 1 A 6 VAL A 67 SER A 69 0 SHEET 2 A 6 LEU A 35 TRP A 38 1 N ILE A 37 O LEU A 68 SHEET 3 A 6 TYR A 109 PHE A 114 1 O ASN A 110 N VAL A 36 SHEET 4 A 6 MSE A 133 VAL A 139 1 O VAL A 139 N GLY A 113 SHEET 5 A 6 LYS A 224 PHE A 230 1 O VAL A 226 N SER A 138 SHEET 6 A 6 LEU A 280 THR A 285 1 O VAL A 281 N MSE A 227 SHEET 1 B 2 PHE A 246 TYR A 247 0 SHEET 2 B 2 THR A 255 ILE A 256 -1 O ILE A 256 N PHE A 246 SHEET 1 C 6 VAL B 67 SER B 69 0 SHEET 2 C 6 LEU B 35 TRP B 38 1 N ILE B 37 O LEU B 68 SHEET 3 C 6 TYR B 109 PHE B 114 1 O MSE B 112 N VAL B 36 SHEET 4 C 6 MSE B 133 VAL B 139 1 O VAL B 139 N GLY B 113 SHEET 5 C 6 LYS B 224 PHE B 230 1 O VAL B 226 N SER B 138 SHEET 6 C 6 LEU B 280 THR B 285 1 O VAL B 281 N MSE B 227 SHEET 1 D 2 PHE B 246 TYR B 247 0 SHEET 2 D 2 THR B 255 ILE B 256 -1 O ILE B 256 N PHE B 246 SSBOND 1 CYS A 45 CYS A 46 1555 1555 2.09 SSBOND 2 CYS A 96 CYS A 128 1555 1555 2.04 SSBOND 3 CYS A 152 CYS A 160 1555 1555 2.04 SSBOND 4 CYS B 45 CYS B 46 1555 1555 2.08 SSBOND 5 CYS B 96 CYS B 128 1555 1555 2.02 SSBOND 6 CYS B 152 CYS B 160 1555 1555 2.07 LINK C GLY A 40 N MSE A 41 1555 1555 1.32 LINK C MSE A 41 N GLY A 42 1555 1555 1.33 LINK C SER A 50 N MSE A 51 1555 1555 1.33 LINK C MSE A 51 N GLY A 52 1555 1555 1.34 LINK C LYS A 56 N MSE A 57 1555 1555 1.33 LINK C MSE A 57 N VAL A 58 1555 1555 1.33 LINK C LEU A 76 N MSE A 77 1555 1555 1.33 LINK C MSE A 77 N GLU A 78 1555 1555 1.34 LINK C ALA A 111 N MSE A 112 1555 1555 1.33 LINK C MSE A 112 N GLY A 113 1555 1555 1.33 LINK C PRO A 132 N MSE A 133 1555 1555 1.32 LINK C MSE A 133 N ILE A 134 1555 1555 1.34 LINK C LEU A 219 N MSE A 220 1555 1555 1.33 LINK C MSE A 220 N ALA A 221 1555 1555 1.34 LINK C VAL A 226 N MSE A 227 1555 1555 1.33 LINK C MSE A 227 N VAL A 228 1555 1555 1.33 LINK C GLU A 273 N MSE A 274 1555 1555 1.33 LINK C MSE A 274 N ASP A 275 1555 1555 1.33 LINK C GLY B 40 N MSE B 41 1555 1555 1.32 LINK C MSE B 41 N GLY B 42 1555 1555 1.33 LINK C SER B 50 N MSE B 51 1555 1555 1.34 LINK C MSE B 51 N GLY B 52 1555 1555 1.33 LINK C LYS B 56 N MSE B 57 1555 1555 1.33 LINK C MSE B 57 N VAL B 58 1555 1555 1.33 LINK C LEU B 76 N MSE B 77 1555 1555 1.33 LINK C MSE B 77 N GLU B 78 1555 1555 1.33 LINK C ALA B 111 N MSE B 112 1555 1555 1.34 LINK C MSE B 112 N GLY B 113 1555 1555 1.33 LINK C PRO B 132 N MSE B 133 1555 1555 1.33 LINK C MSE B 133 N ILE B 134 1555 1555 1.33 LINK C LEU B 219 N MSE B 220 1555 1555 1.34 LINK C MSE B 220 N ALA B 221 1555 1555 1.34 LINK C VAL B 226 N MSE B 227 1555 1555 1.33 LINK C MSE B 227 N VAL B 228 1555 1555 1.33 LINK C GLU B 273 N MSE B 274 1555 1555 1.33 LINK C MSE B 274 N ASP B 275 1555 1555 1.33 CISPEP 1 SER A 130 PRO A 131 0 3.33 CISPEP 2 ASP A 237 PRO A 238 0 0.34 CISPEP 3 SER B 130 PRO B 131 0 -3.20 CISPEP 4 ASP B 237 PRO B 238 0 -4.92 CRYST1 53.710 90.642 129.165 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018619 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011032 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007742 0.00000