HEADER OXIDOREDUCTASE 27-MAR-09 3GSI TITLE CRYSTAL STRUCTURE OF D552A DIMETHYLGLYCINE OXIDASE MUTANT OF TITLE 2 ARTHROBACTER GLOBIFORMIS IN COMPLEX WITH TETRAHYDROFOLATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: N,N-DIMETHYLGLYCINE OXIDASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.5.3.10; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARTHROBACTER GLOBIFORMIS; SOURCE 3 ORGANISM_TAXID: 1665; SOURCE 4 GENE: DMG; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: JM109; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PEH1 KEYWDS OXIDOREDUCTASE, CHANNELLING, FAD BINDING, FOLINIC ACID, FOLATE KEYWDS 2 BINDING, AMINE OXIDATION EXPDTA X-RAY DIFFRACTION AUTHOR T.TRALAU,P.LAFITE,C.LEVY,J.P.COMBE,N.S.SCRUTTON,D.LEYS REVDAT 4 21-FEB-24 3GSI 1 REMARK REVDAT 3 20-OCT-21 3GSI 1 REMARK SEQADV LINK REVDAT 2 14-JUL-09 3GSI 1 JRNL REVDAT 1 14-APR-09 3GSI 0 JRNL AUTH T.TRALAU,P.LAFITE,C.LEVY,J.P.COMBE,N.S.SCRUTTON,D.LEYS JRNL TITL AN INTERNAL REACTION CHAMBER IN DIMETHYLGLYCINE OXIDASE JRNL TITL 2 PROVIDES EFFICIENT PROTECTION FROM EXPOSURE TO TOXIC JRNL TITL 3 FORMALDEHYDE. JRNL REF J.BIOL.CHEM. V. 284 17826 2009 JRNL REFN ISSN 0021-9258 JRNL PMID 19369258 JRNL DOI 10.1074/JBC.M109.006262 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.79 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 3 NUMBER OF REFLECTIONS : 62960 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.153 REMARK 3 R VALUE (WORKING SET) : 0.150 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 3193 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.8017 - 5.6825 0.98 2841 142 0.1603 0.1979 REMARK 3 2 5.6825 - 4.5124 1.00 2755 145 0.1349 0.1628 REMARK 3 3 4.5124 - 3.9426 1.00 2722 147 0.1178 0.1590 REMARK 3 4 3.9426 - 3.5824 1.00 2696 147 0.1270 0.1604 REMARK 3 5 3.5824 - 3.3257 1.00 2689 156 0.1377 0.1643 REMARK 3 6 3.3257 - 3.1297 1.00 2664 156 0.1578 0.2061 REMARK 3 7 3.1297 - 2.9730 0.98 2649 126 0.1666 0.2104 REMARK 3 8 2.9730 - 2.8437 0.98 2616 135 0.1645 0.2229 REMARK 3 9 2.8437 - 2.7342 0.97 2601 126 0.1659 0.2215 REMARK 3 10 2.7342 - 2.6399 0.96 2585 131 0.1610 0.2342 REMARK 3 11 2.6399 - 2.5574 0.96 2555 158 0.1546 0.2371 REMARK 3 12 2.5574 - 2.4843 0.96 2572 123 0.1544 0.2454 REMARK 3 13 2.4843 - 2.4189 0.96 2568 122 0.1538 0.1906 REMARK 3 14 2.4189 - 2.3599 0.95 2521 136 0.1433 0.2266 REMARK 3 15 2.3599 - 2.3062 0.96 2533 144 0.1453 0.2019 REMARK 3 16 2.3062 - 2.2572 0.95 2535 140 0.1465 0.2197 REMARK 3 17 2.2572 - 2.2120 0.95 2514 152 0.1519 0.2261 REMARK 3 18 2.2120 - 2.1703 0.96 2521 144 0.1472 0.2157 REMARK 3 19 2.1703 - 2.1315 0.95 2537 138 0.1493 0.2192 REMARK 3 20 2.1315 - 2.0954 0.95 2478 146 0.1530 0.2198 REMARK 3 21 2.0954 - 2.0616 0.95 2537 136 0.1598 0.2193 REMARK 3 22 2.0616 - 2.0299 0.95 2541 122 0.1660 0.2561 REMARK 3 23 2.0299 - 2.0000 0.95 2537 121 0.1680 0.2254 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.36 REMARK 3 B_SOL : 48.43 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3GSI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-APR-09. REMARK 100 THE DEPOSITION ID IS D_1000052254. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-MAR-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.072 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 62960 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 39.809 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.66 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG MME 5000, 0.1M HEPES PH 7.5, REMARK 280 0.2M MGCL2, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z REMARK 290 7555 -X+1/2,Y+1/2,-Z REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 35.60750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 112.27400 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 35.60750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 112.27400 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 35.60750 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 112.27400 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 35.60750 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 112.27400 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8490 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 113920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.5 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 71.21500 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 224.54800 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 71.21500 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 119.38200 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 224.54800 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 119.38200 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1296 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 115 CG CD OE1 OE2 REMARK 470 GLU A 126 CG CD OE1 OE2 REMARK 470 GLU A 134 CG CD OE1 OE2 REMARK 470 ARG A 183 CD NE CZ NH1 NH2 REMARK 470 GLU A 294 CD OE1 OE2 REMARK 470 GLU A 306 CG CD OE1 OE2 REMARK 470 GLU A 387 CG CD OE1 OE2 REMARK 470 GLU A 467 CG CD OE1 OE2 REMARK 470 LYS A 532 CD CE NZ REMARK 470 LYS A 533 CD CE NZ REMARK 470 LYS A 618 CD CE NZ REMARK 470 GLU A 726 CG CD OE1 OE2 REMARK 470 GLU A 735 CD OE1 OE2 REMARK 470 GLU A 817 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE2 HIS A 48 C8M FAD A 902 2.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLN A 594 OE1 GLN A 594 3656 1.62 REMARK 500 NH2 ARG A 755 O HOH A 911 2665 1.96 REMARK 500 O HOH A 1037 O HOH A 1037 4566 1.96 REMARK 500 O HOH A 1447 O HOH A 1447 2665 1.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 454 NE - CZ - NH2 ANGL. DEV. = -4.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 41 82.30 -160.37 REMARK 500 CYS A 202 51.50 -113.01 REMARK 500 ALA A 273 47.35 -91.95 REMARK 500 ALA A 359 61.97 62.34 REMARK 500 ALA A 499 -111.75 -135.44 REMARK 500 THR A 704 -55.58 -124.78 REMARK 500 ARG A 755 -32.13 -139.78 REMARK 500 LYS A 761 -5.70 82.59 REMARK 500 THR A 775 -69.64 -90.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 901 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 257 OD2 REMARK 620 2 VAL A 412 O 176.3 REMARK 620 3 HOH A1243 O 98.1 84.9 REMARK 620 4 HOH A1244 O 87.9 94.4 87.4 REMARK 620 5 HOH A1245 O 86.7 90.5 172.2 86.7 REMARK 620 6 HOH A1246 O 90.4 87.6 86.1 173.0 100.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE THG A 2887 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 902 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1PJ5 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF DIMETHYLGLYCINE OXIDASE OF ARTHROBACTER REMARK 900 GLOBIFORMIS IN COMPLEX WITH ACETATE REMARK 900 RELATED ID: 1PJ6 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF DIMETHYLGLYCINE OXIDASE OF ARTHROBACTER REMARK 900 GLOBIFORMIS IN COMPLEX WITH FOLIC ACID REMARK 900 RELATED ID: 1PJ7 RELATED DB: PDB REMARK 900 STRUCTURE OF DIMETHYLGLYCINE OXIDASE OF ARTHROBACTER GLOBIFORMIS IN REMARK 900 COMPLEX WITH FOLINIC ACID DBREF 3GSI A 4 830 UNP Q9AGP8 Q9AGP8_ARTGO 4 830 SEQADV 3GSI ALA A 552 UNP Q9AGP8 ASP 552 ENGINEERED MUTATION SEQRES 1 A 827 THR PRO ARG ILE VAL ILE ILE GLY ALA GLY ILE VAL GLY SEQRES 2 A 827 THR ASN LEU ALA ASP GLU LEU VAL THR ARG GLY TRP ASN SEQRES 3 A 827 ASN ILE THR VAL LEU ASP GLN GLY PRO LEU ASN MET PRO SEQRES 4 A 827 GLY GLY SER THR SER HIS ALA PRO GLY LEU VAL PHE GLN SEQRES 5 A 827 THR ASN PRO SER LYS THR MET ALA SER PHE ALA LYS TYR SEQRES 6 A 827 THR VAL GLU LYS LEU LEU SER LEU THR GLU ASP GLY VAL SEQRES 7 A 827 SER CYS PHE ASN GLN VAL GLY GLY LEU GLU VAL ALA THR SEQRES 8 A 827 THR GLU THR ARG LEU ALA ASP LEU LYS ARG LYS LEU GLY SEQRES 9 A 827 TYR ALA ALA ALA TRP GLY ILE GLU GLY ARG LEU LEU SER SEQRES 10 A 827 PRO ALA GLU CYS GLN GLU LEU TYR PRO LEU LEU ASP GLY SEQRES 11 A 827 GLU ASN ILE LEU GLY GLY LEU HIS VAL PRO SER ASP GLY SEQRES 12 A 827 LEU ALA SER ALA ALA ARG ALA VAL GLN LEU LEU ILE LYS SEQRES 13 A 827 ARG THR GLU SER ALA GLY VAL THR TYR ARG GLY SER THR SEQRES 14 A 827 THR VAL THR GLY ILE GLU GLN SER GLY GLY ARG VAL THR SEQRES 15 A 827 GLY VAL GLN THR ALA ASP GLY VAL ILE PRO ALA ASP ILE SEQRES 16 A 827 VAL VAL SER CYS ALA GLY PHE TRP GLY ALA LYS ILE GLY SEQRES 17 A 827 ALA MET ILE GLY MET ALA VAL PRO LEU LEU PRO LEU ALA SEQRES 18 A 827 HIS GLN TYR VAL LYS THR THR PRO VAL PRO ALA GLN GLN SEQRES 19 A 827 GLY ARG ASN ASP GLN PRO ASN GLY ALA ARG LEU PRO ILE SEQRES 20 A 827 LEU ARG HIS GLN ASP GLN ASP LEU TYR TYR ARG GLU HIS SEQRES 21 A 827 GLY ASP ARG TYR GLY ILE GLY SER TYR ALA HIS ARG PRO SEQRES 22 A 827 MET PRO VAL ASP VAL ASP THR LEU GLY ALA TYR ALA PRO SEQRES 23 A 827 GLU THR VAL SER GLU HIS HIS MET PRO SER ARG LEU ASP SEQRES 24 A 827 PHE THR LEU GLU ASP PHE LEU PRO ALA TRP GLU ALA THR SEQRES 25 A 827 LYS GLN LEU LEU PRO ALA LEU ALA ASP SER GLU ILE GLU SEQRES 26 A 827 ASP GLY PHE ASN GLY ILE PHE SER PHE THR PRO ASP GLY SEQRES 27 A 827 GLY PRO LEU LEU GLY GLU SER LYS GLU LEU ASP GLY PHE SEQRES 28 A 827 TYR VAL ALA GLU ALA VAL TRP VAL THR HIS SER ALA GLY SEQRES 29 A 827 VAL ALA LYS ALA MET ALA GLU LEU LEU THR THR GLY ARG SEQRES 30 A 827 SER GLU THR ASP LEU GLY GLU CYS ASP ILE THR ARG PHE SEQRES 31 A 827 GLU ASP VAL GLN LEU THR PRO GLU TYR VAL SER GLU THR SEQRES 32 A 827 SER GLN GLN ASN PHE VAL GLU ILE TYR ASP VAL LEU HIS SEQRES 33 A 827 PRO LEU GLN PRO ARG LEU SER PRO ARG ASN LEU ARG VAL SEQRES 34 A 827 SER PRO PHE HIS ALA ARG HIS LYS GLU LEU GLY ALA PHE SEQRES 35 A 827 PHE LEU GLU ALA GLY GLY TRP GLU ARG PRO TYR TRP PHE SEQRES 36 A 827 GLU ALA ASN ALA ALA LEU LEU LYS GLU MET PRO ALA GLU SEQRES 37 A 827 TRP LEU PRO PRO ALA ARG ASP ALA TRP SER GLY MET PHE SEQRES 38 A 827 SER SER PRO ILE ALA ALA ALA GLU ALA TRP LYS THR ARG SEQRES 39 A 827 THR ALA VAL ALA MET TYR ASP MET THR PRO LEU LYS ARG SEQRES 40 A 827 LEU GLU VAL SER GLY PRO GLY ALA LEU LYS LEU LEU GLN SEQRES 41 A 827 GLU LEU THR THR ALA ASP LEU ALA LYS LYS PRO GLY ALA SEQRES 42 A 827 VAL THR TYR THR LEU LEU LEU ASP HIS ALA GLY GLY VAL SEQRES 43 A 827 ARG SER ALA ILE THR VAL ALA ARG LEU SER GLU ASP THR SEQRES 44 A 827 PHE GLN LEU GLY ALA ASN GLY ASN ILE ASP THR ALA TYR SEQRES 45 A 827 PHE GLU ARG ALA ALA ARG HIS GLN THR GLN SER GLY SER SEQRES 46 A 827 ALA THR ASP TRP VAL GLN VAL ARG ASP THR THR GLY GLY SEQRES 47 A 827 THR CYS CYS ILE GLY LEU TRP GLY PRO LEU ALA ARG ASP SEQRES 48 A 827 LEU VAL SER LYS VAL SER ASP ASP ASP PHE THR ASN ASP SEQRES 49 A 827 GLY LEU LYS TYR PHE ARG ALA LYS ASN VAL VAL ILE GLY SEQRES 50 A 827 GLY ILE PRO VAL THR ALA MET ARG LEU SER TYR VAL GLY SEQRES 51 A 827 GLU LEU GLY TRP GLU LEU TYR THR SER ALA ASP ASN GLY SEQRES 52 A 827 GLN ARG LEU TRP ASP ALA LEU TRP GLN ALA GLY GLN PRO SEQRES 53 A 827 PHE GLY VAL ILE ALA ALA GLY ARG ALA ALA PHE SER SER SEQRES 54 A 827 LEU ARG LEU GLU LYS GLY TYR ARG SER TRP GLY THR ASP SEQRES 55 A 827 MET THR THR GLU HIS ASP PRO PHE GLU ALA GLY LEU GLY SEQRES 56 A 827 PHE ALA VAL LYS MET ALA LYS GLU SER PHE ILE GLY LYS SEQRES 57 A 827 GLY ALA LEU GLU GLY ARG THR GLU GLU ALA SER ALA ARG SEQRES 58 A 827 ARG LEU ARG CYS LEU THR ILE ASP ASP GLY ARG SER ILE SEQRES 59 A 827 VAL LEU GLY LYS GLU PRO VAL PHE TYR LYS GLU GLN ALA SEQRES 60 A 827 VAL GLY TYR VAL THR SER ALA ALA TYR GLY TYR THR VAL SEQRES 61 A 827 ALA LYS PRO ILE ALA TYR SER TYR LEU PRO GLY THR VAL SEQRES 62 A 827 SER VAL GLY ASP SER VAL ASP ILE GLU TYR PHE GLY ARG SEQRES 63 A 827 ARG ILE THR ALA THR VAL THR GLU ASP PRO LEU TYR ASP SEQRES 64 A 827 PRO LYS MET THR ARG LEU ARG GLY HET THG A2887 32 HET MG A 901 1 HET FAD A 902 53 HETNAM THG (6S)-5,6,7,8-TETRAHYDROFOLATE HETNAM MG MAGNESIUM ION HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE FORMUL 2 THG C19 H23 N7 O6 FORMUL 3 MG MG 2+ FORMUL 4 FAD C27 H33 N9 O15 P2 FORMUL 5 HOH *1080(H2 O) HELIX 1 1 GLY A 13 THR A 25 1 13 HELIX 2 2 GLY A 44 ALA A 49 5 6 HELIX 3 3 SER A 59 LEU A 76 1 18 HELIX 4 4 THR A 95 GLY A 113 1 19 HELIX 5 5 SER A 120 TYR A 128 1 9 HELIX 6 6 ASP A 132 ILE A 136 5 5 HELIX 7 7 SER A 149 ALA A 164 1 16 HELIX 8 8 ALA A 203 PHE A 205 5 3 HELIX 9 9 TRP A 206 MET A 213 1 8 HELIX 10 10 VAL A 233 GLN A 237 5 5 HELIX 11 11 GLN A 254 GLN A 256 5 3 HELIX 12 12 ASP A 280 LEU A 284 5 5 HELIX 13 13 ALA A 288 VAL A 292 5 5 HELIX 14 14 THR A 304 LEU A 319 1 16 HELIX 15 15 PRO A 320 SER A 325 5 6 HELIX 16 16 TRP A 361 THR A 363 5 3 HELIX 17 17 HIS A 364 GLY A 379 1 16 HELIX 18 18 ASP A 389 PHE A 393 5 5 HELIX 19 19 GLU A 394 LEU A 398 5 5 HELIX 20 20 THR A 399 GLU A 413 1 15 HELIX 21 21 PHE A 435 LEU A 442 1 8 HELIX 22 22 ALA A 460 MET A 468 5 9 HELIX 23 23 PRO A 469 LEU A 473 5 5 HELIX 24 24 PRO A 487 ALA A 499 1 13 HELIX 25 25 GLY A 517 THR A 526 1 10 HELIX 26 26 GLY A 569 GLY A 587 1 19 HELIX 27 27 LEU A 611 SER A 617 1 7 HELIX 28 28 ASN A 665 GLN A 678 1 14 HELIX 29 29 PRO A 679 GLY A 681 5 3 HELIX 30 30 GLY A 686 LYS A 697 1 12 HELIX 31 31 LEU A 717 VAL A 721 5 5 HELIX 32 32 GLY A 730 GLU A 735 1 6 SHEET 1 A 6 THR A 167 ARG A 169 0 SHEET 2 A 6 ILE A 31 LEU A 34 1 N VAL A 33 O THR A 167 SHEET 3 A 6 ILE A 7 ILE A 10 1 N ILE A 9 O THR A 32 SHEET 4 A 6 ILE A 198 SER A 201 1 O ILE A 198 N VAL A 8 SHEET 5 A 6 PHE A 354 GLU A 358 1 O TYR A 355 N SER A 201 SHEET 6 A 6 LEU A 344 GLU A 347 -1 N LEU A 344 O GLU A 358 SHEET 1 B 3 LEU A 52 VAL A 53 0 SHEET 2 B 3 GLY A 146 ALA A 148 -1 O GLY A 146 N VAL A 53 SHEET 3 B 3 PHE A 84 ASN A 85 -1 N ASN A 85 O LEU A 147 SHEET 1 C 2 THR A 77 GLU A 78 0 SHEET 2 C 2 VAL A 81 SER A 82 -1 O VAL A 81 N GLU A 78 SHEET 1 D 9 ARG A 117 LEU A 119 0 SHEET 2 D 9 GLY A 138 VAL A 142 -1 O HIS A 141 N ARG A 117 SHEET 3 D 9 GLY A 89 ALA A 93 -1 N ALA A 93 O GLY A 138 SHEET 4 D 9 ILE A 250 HIS A 253 1 O ARG A 252 N LEU A 90 SHEET 5 D 9 LEU A 258 HIS A 263 -1 O LEU A 258 N HIS A 253 SHEET 6 D 9 ARG A 266 SER A 271 -1 O GLY A 268 N ARG A 261 SHEET 7 D 9 LEU A 221 THR A 230 -1 N VAL A 228 O ILE A 269 SHEET 8 D 9 ILE A 327 PHE A 337 -1 O PHE A 337 N LEU A 221 SHEET 9 D 9 ARG A 300 LEU A 301 -1 N LEU A 301 O ASN A 332 SHEET 1 E 3 VAL A 174 SER A 180 0 SHEET 2 E 3 ARG A 183 THR A 189 -1 O GLN A 188 N THR A 175 SHEET 3 E 3 GLY A 192 PRO A 195 -1 O ILE A 194 N VAL A 187 SHEET 1 F 2 ALA A 444 ALA A 449 0 SHEET 2 F 2 TRP A 452 PHE A 458 -1 O TYR A 456 N PHE A 445 SHEET 1 G 6 ALA A 634 ILE A 639 0 SHEET 2 G 6 ILE A 642 MET A 647 -1 O VAL A 644 N VAL A 637 SHEET 3 G 6 GLY A 656 SER A 662 -1 O GLU A 658 N MET A 647 SHEET 4 G 6 THR A 602 TRP A 608 -1 N LEU A 607 O TRP A 657 SHEET 5 G 6 ALA A 501 ASP A 504 -1 N TYR A 503 O GLY A 606 SHEET 6 G 6 ILE A 683 ALA A 685 1 O ILE A 683 N MET A 502 SHEET 1 H 5 VAL A 537 LEU A 543 0 SHEET 2 H 5 VAL A 549 SER A 559 -1 O ILE A 553 N THR A 540 SHEET 3 H 5 THR A 562 GLY A 566 -1 O GLN A 564 N ALA A 556 SHEET 4 H 5 ARG A 510 SER A 514 -1 N LEU A 511 O LEU A 565 SHEET 5 H 5 GLN A 594 ASP A 597 -1 O ARG A 596 N GLU A 512 SHEET 1 I 7 ARG A 744 ILE A 751 0 SHEET 2 I 7 LYS A 785 PRO A 793 -1 O ALA A 788 N LEU A 749 SHEET 3 I 7 GLN A 769 GLY A 780 -1 N ALA A 778 O ILE A 787 SHEET 4 I 7 PRO A 763 TYR A 766 -1 N VAL A 764 O VAL A 771 SHEET 5 I 7 SER A 801 TYR A 806 -1 O ASP A 803 N PHE A 765 SHEET 6 I 7 ARG A 809 THR A 816 -1 O ALA A 813 N VAL A 802 SHEET 7 I 7 ARG A 744 ILE A 751 -1 N CYS A 748 O THR A 816 LINK OD2 ASP A 257 MG MG A 901 1555 1555 2.17 LINK O VAL A 412 MG MG A 901 1555 1555 2.17 LINK MG MG A 901 O HOH A1243 1555 1555 2.20 LINK MG MG A 901 O HOH A1244 1555 1555 2.19 LINK MG MG A 901 O HOH A1245 1555 1555 2.11 LINK MG MG A 901 O HOH A1246 1555 1555 2.17 CISPEP 1 GLN A 242 PRO A 243 0 0.74 CISPEP 2 SER A 426 PRO A 427 0 -7.96 CISPEP 3 ASP A 818 PRO A 819 0 0.97 SITE 1 AC1 19 MET A 505 LEU A 508 TYR A 539 THR A 554 SITE 2 AC1 19 GLY A 566 TYR A 631 PHE A 632 TYR A 651 SITE 3 AC1 19 GLU A 658 TYR A 660 TYR A 699 PHE A 719 SITE 4 AC1 19 HOH A 919 HOH A1046 HOH A1219 HOH A1248 SITE 5 AC1 19 HOH A1390 HOH A1502 HOH A1843 SITE 1 AC2 6 ASP A 257 VAL A 412 HOH A1243 HOH A1244 SITE 2 AC2 6 HOH A1245 HOH A1246 SITE 1 AC3 39 GLY A 11 GLY A 13 ILE A 14 VAL A 15 SITE 2 AC3 39 ASP A 35 GLN A 36 PRO A 42 GLY A 44 SITE 3 AC3 39 SER A 45 THR A 46 HIS A 48 ALA A 49 SITE 4 AC3 39 PRO A 50 GLY A 51 LEU A 52 THR A 172 SITE 5 AC3 39 VAL A 174 CYS A 202 ALA A 203 GLY A 204 SITE 6 AC3 39 TRP A 206 ILE A 210 HIS A 225 TYR A 259 SITE 7 AC3 39 GLY A 333 ILE A 334 PHE A 335 VAL A 360 SITE 8 AC3 39 TRP A 361 VAL A 362 THR A 363 HOH A 851 SITE 9 AC3 39 HOH A 854 HOH A 872 HOH A 909 HOH A 978 SITE 10 AC3 39 HOH A1068 HOH A1187 HOH A1415 CRYST1 71.215 224.548 119.382 90.00 90.00 90.00 C 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014042 0.000000 0.000000 0.00000 SCALE2 0.000000 0.004453 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008377 0.00000