HEADER TRANSFERASE 30-MAR-09 3GUH TITLE CRYSTAL STRUCTURE OF WILD-TYPE E.COLI GS IN COMPLEX WITH ADP AND DGM COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCOGEN SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: STARCH [BACTERIAL GLYCOGEN] SYNTHASE; COMPND 5 EC: 2.4.1.21; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 GENE: B3429, GLGA, JW3392; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET24A KEYWDS GLYCOSYL-TRANSFERASE, GT-B FOLD, ROSSMANN FOLD, CLOSED-FORM, ADP AND KEYWDS 2 INTERMEDIATE D-GLUCOPYRANOSYLIUM BINDING, GLYCOGEN BIOSYNTHESIS, KEYWDS 3 GLYCOSYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR F.SHENG,J.GEIGER REVDAT 5 06-SEP-23 3GUH 1 HETSYN REVDAT 4 29-JUL-20 3GUH 1 COMPND REMARK SEQADV HETNAM REVDAT 4 2 1 SITE REVDAT 3 01-NOV-17 3GUH 1 REMARK REVDAT 2 07-JUL-09 3GUH 1 JRNL REVDAT 1 28-APR-09 3GUH 0 JRNL AUTH F.SHENG,X.JIA,A.YEP,J.PREISS,J.H.GEIGER JRNL TITL THE CRYSTAL STRUCTURES OF THE OPEN AND CATALYTICALLY JRNL TITL 2 COMPETENT CLOSED CONFORMATION OF ESCHERICHIA COLI GLYCOGEN JRNL TITL 3 SYNTHASE. JRNL REF J.BIOL.CHEM. V. 284 17796 2009 JRNL REFN ISSN 0021-9258 JRNL PMID 19244233 JRNL DOI 10.1074/JBC.M809804200 REMARK 2 REMARK 2 RESOLUTION. 2.79 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.79 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 29120 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1478 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.79 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.86 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1694 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 82.48 REMARK 3 BIN R VALUE (WORKING SET) : 0.3020 REMARK 3 BIN FREE R VALUE SET COUNT : 118 REMARK 3 BIN FREE R VALUE : 0.3430 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3735 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 111 REMARK 3 SOLVENT ATOMS : 209 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 62.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.53 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.33000 REMARK 3 B22 (A**2) : 1.33000 REMARK 3 B33 (A**2) : -2.67000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.287 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.219 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.154 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.902 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.938 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3943 ; 0.023 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5346 ; 2.276 ; 1.977 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 476 ; 7.029 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 179 ;31.346 ;22.849 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 594 ;21.504 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;24.552 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 574 ; 0.154 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3008 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2369 ; 0.945 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3773 ; 1.803 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1574 ; 2.743 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1573 ; 4.311 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3GUH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-MAR-09. REMARK 100 THE DEPOSITION ID IS D_1000052321. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-MAY-05 REMARK 200 TEMPERATURE (KELVIN) : 98 REMARK 200 PH : 8.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 14-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29543 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.790 REMARK 200 RESOLUTION RANGE LOW (A) : 97.130 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.910 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 8.100 REMARK 200 R MERGE (I) : 0.14600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.9960 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.79 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.10 REMARK 200 R MERGE FOR SHELL (I) : 0.51600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1RZU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 78.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 40% (W/V) PEG 4000, 0.2 M NAAC, 0.1 M REMARK 280 HEPPSO, PH 8.1, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y,Z REMARK 290 7555 -Y+1/2,X,Z+3/4 REMARK 290 8555 Y,-X+1/2,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 62.92050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 62.92050 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 76.63150 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 62.92050 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 38.31575 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 62.92050 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 114.94725 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 62.92050 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 62.92050 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 76.63150 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 62.92050 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 114.94725 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 62.92050 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 38.31575 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 478 REMARK 465 GLU A 479 REMARK 465 HIS A 480 REMARK 465 HIS A 481 REMARK 465 HIS A 482 REMARK 465 HIS A 483 REMARK 465 HIS A 484 REMARK 465 HIS A 485 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O1A ADP A 486 O4 ASO A 488 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 411 CB GLU A 411 CG -0.124 REMARK 500 GLU A 471 CB GLU A 471 CG 0.127 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 90 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 LEU A 261 CA - CB - CG ANGL. DEV. = 15.3 DEGREES REMARK 500 ARG A 267 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 ARG A 437 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 10 116.59 -172.03 REMARK 500 ALA A 25 -32.49 -133.09 REMARK 500 ASP A 97 -179.68 -64.13 REMARK 500 ASN A 99 42.75 -92.50 REMARK 500 ASN A 106 -35.13 -37.30 REMARK 500 ASP A 137 177.66 60.32 REMARK 500 ASN A 162 118.19 -173.22 REMARK 500 PRO A 180 123.29 -38.83 REMARK 500 TRP A 253 75.48 -119.84 REMARK 500 ASP A 331 109.19 -30.48 REMARK 500 PRO A 373 55.68 -96.21 REMARK 500 CYS A 379 -64.41 -137.09 REMARK 500 SER A 426 63.50 -69.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 THE ASO SPECIES IN THIS PDB ENTRY DOES NOT HAVE HYDROGEN ATOM ON C1, REMARK 600 THEREFORE IT IS POSITIVELY CHARGED AND THE PARTIAL PLANARITY IS REMARK 600 MAINTAINED AMONG C2C1O5C5. REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PE3 A 489 REMARK 610 PE3 A 491 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2QZS RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF WILD-TYPE E.COLI GS IN COMPLEX WITH ADP AND REMARK 900 GLUCOSE(WTGSB) REMARK 900 RELATED ID: 2R4T RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF WILD-TYPE E.COLI GS IN COMPLEX WITH ADP AND REMARK 900 GLUCOSE(WTGSC) REMARK 900 RELATED ID: 2R4U RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF WILD-TYPE E.COLI GS IN COMPLEX WITH ADP AND REMARK 900 GLUCOSE(WTGSD) REMARK 900 RELATED ID: 3COP RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF E.COLI GS MUTANT E377A IN COMPLEX WITH ADP AND REMARK 900 ACCEPTOR ANALOGUE HEPPSO REMARK 900 RELATED ID: 3CX4 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF E.COLI GS MUTANT E377A IN COMPLEX WITH ADP AND REMARK 900 OLIGOSACCHARIDES REMARK 900 RELATED ID: 3D1J RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF E.COLI GS MUTANT DMGS(C7S;C408S) REMARK 900 RELATED ID: 2QYY RELATED DB: PDB DBREF 3GUH A 1 477 UNP P0A6U8 GLGA_ECOLI 1 477 SEQADV 3GUH LEU A 478 UNP P0A6U8 EXPRESSION TAG SEQADV 3GUH GLU A 479 UNP P0A6U8 EXPRESSION TAG SEQADV 3GUH HIS A 480 UNP P0A6U8 EXPRESSION TAG SEQADV 3GUH HIS A 481 UNP P0A6U8 EXPRESSION TAG SEQADV 3GUH HIS A 482 UNP P0A6U8 EXPRESSION TAG SEQADV 3GUH HIS A 483 UNP P0A6U8 EXPRESSION TAG SEQADV 3GUH HIS A 484 UNP P0A6U8 EXPRESSION TAG SEQADV 3GUH HIS A 485 UNP P0A6U8 EXPRESSION TAG SEQRES 1 A 485 MET GLN VAL LEU HIS VAL CYS SER GLU MET PHE PRO LEU SEQRES 2 A 485 LEU LYS THR GLY GLY LEU ALA ASP VAL ILE GLY ALA LEU SEQRES 3 A 485 PRO ALA ALA GLN ILE ALA ASP GLY VAL ASP ALA ARG VAL SEQRES 4 A 485 LEU LEU PRO ALA PHE PRO ASP ILE ARG ARG GLY VAL THR SEQRES 5 A 485 ASP ALA GLN VAL VAL SER ARG ARG ASP THR PHE ALA GLY SEQRES 6 A 485 HIS ILE THR LEU LEU PHE GLY HIS TYR ASN GLY VAL GLY SEQRES 7 A 485 ILE TYR LEU ILE ASP ALA PRO HIS LEU TYR ASP ARG PRO SEQRES 8 A 485 GLY SER PRO TYR HIS ASP THR ASN LEU PHE ALA TYR THR SEQRES 9 A 485 ASP ASN VAL LEU ARG PHE ALA LEU LEU GLY TRP VAL GLY SEQRES 10 A 485 ALA GLU MET ALA SER GLY LEU ASP PRO PHE TRP ARG PRO SEQRES 11 A 485 ASP VAL VAL HIS ALA HIS ASP TRP HIS ALA GLY LEU ALA SEQRES 12 A 485 PRO ALA TYR LEU ALA ALA ARG GLY ARG PRO ALA LYS SER SEQRES 13 A 485 VAL PHE THR VAL HIS ASN LEU ALA TYR GLN GLY MET PHE SEQRES 14 A 485 TYR ALA HIS HIS MET ASN ASP ILE GLN LEU PRO TRP SER SEQRES 15 A 485 PHE PHE ASN ILE HIS GLY LEU GLU PHE ASN GLY GLN ILE SEQRES 16 A 485 SER PHE LEU LYS ALA GLY LEU TYR TYR ALA ASP HIS ILE SEQRES 17 A 485 THR ALA VAL SER PRO THR TYR ALA ARG GLU ILE THR GLU SEQRES 18 A 485 PRO GLN PHE ALA TYR GLY MET GLU GLY LEU LEU GLN GLN SEQRES 19 A 485 ARG HIS ARG GLU GLY ARG LEU SER GLY VAL LEU ASN GLY SEQRES 20 A 485 VAL ASP GLU LYS ILE TRP SER PRO GLU THR ASP LEU LEU SEQRES 21 A 485 LEU ALA SER ARG TYR THR ARG ASP THR LEU GLU ASP LYS SEQRES 22 A 485 ALA GLU ASN LYS ARG GLN LEU GLN ILE ALA MET GLY LEU SEQRES 23 A 485 LYS VAL ASP ASP LYS VAL PRO LEU PHE ALA VAL VAL SER SEQRES 24 A 485 ARG LEU THR SER GLN LYS GLY LEU ASP LEU VAL LEU GLU SEQRES 25 A 485 ALA LEU PRO GLY LEU LEU GLU GLN GLY GLY GLN LEU ALA SEQRES 26 A 485 LEU LEU GLY ALA GLY ASP PRO VAL LEU GLN GLU GLY PHE SEQRES 27 A 485 LEU ALA ALA ALA ALA GLU TYR PRO GLY GLN VAL GLY VAL SEQRES 28 A 485 GLN ILE GLY TYR HIS GLU ALA PHE SER HIS ARG ILE MET SEQRES 29 A 485 GLY GLY ALA ASP VAL ILE LEU VAL PRO SER ARG PHE GLU SEQRES 30 A 485 PRO CYS GLY LEU THR GLN LEU TYR GLY LEU LYS TYR GLY SEQRES 31 A 485 THR LEU PRO LEU VAL ARG ARG THR GLY GLY LEU ALA ASP SEQRES 32 A 485 THR VAL SER ASP CYS SER LEU GLU ASN LEU ALA ASP GLY SEQRES 33 A 485 VAL ALA SER GLY PHE VAL PHE GLU ASP SER ASN ALA TRP SEQRES 34 A 485 SER LEU LEU ARG ALA ILE ARG ARG ALA PHE VAL LEU TRP SEQRES 35 A 485 SER ARG PRO SER LEU TRP ARG PHE VAL GLN ARG GLN ALA SEQRES 36 A 485 MET ALA MET ASP PHE SER TRP GLN VAL ALA ALA LYS SER SEQRES 37 A 485 TYR ARG GLU LEU TYR TYR ARG LEU LYS LEU GLU HIS HIS SEQRES 38 A 485 HIS HIS HIS HIS HET ADP A 486 27 HET 250 A 487 17 HET ASO A 488 11 HET PE3 A 489 37 HET PE3 A 491 11 HET ACT A 493 4 HET ACT A 494 4 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM 250 (2R)-2-HYDROXY-3-[4-(2-HYDROXYETHYL)PIPERAZIN-1- HETNAM 2 250 YL]PROPANE-1-SULFONIC ACID HETNAM ASO 1,5-ANHYDRO-D-GLUCITOL HETNAM PE3 3,6,9,12,15,18,21,24,27,30,33,36,39- HETNAM 2 PE3 TRIDECAOXAHENTETRACONTANE-1,41-DIOL HETNAM ACT ACETATE ION HETSYN ASO 1,5-ANHYDROSORBITOL HETSYN PE3 POLYETHYLENE GLYCOL FORMUL 2 ADP C10 H15 N5 O10 P2 FORMUL 3 250 C9 H20 N2 O5 S FORMUL 4 ASO C6 H12 O5 FORMUL 5 PE3 2(C28 H58 O15) FORMUL 7 ACT 2(C2 H3 O2 1-) FORMUL 9 HOH *209(H2 O) HELIX 1 1 GLY A 17 ASP A 33 1 17 HELIX 2 2 PHE A 44 VAL A 51 1 8 HELIX 3 3 ALA A 84 ASP A 89 1 6 HELIX 4 4 ASP A 105 ALA A 121 1 17 HELIX 5 5 TRP A 138 ALA A 140 5 3 HELIX 6 6 GLY A 141 ARG A 150 1 10 HELIX 7 7 TYR A 170 ASP A 176 5 7 HELIX 8 8 PRO A 180 PHE A 184 5 5 HELIX 9 9 PHE A 197 ALA A 205 1 9 HELIX 10 10 SER A 212 ILE A 219 1 8 HELIX 11 11 GLU A 221 TYR A 226 1 6 HELIX 12 12 MET A 228 GLU A 238 1 11 HELIX 13 13 THR A 269 ASP A 272 5 4 HELIX 14 14 LYS A 273 GLY A 285 1 13 HELIX 15 15 THR A 302 LYS A 305 5 4 HELIX 16 16 GLY A 306 GLN A 320 1 15 HELIX 17 17 ASP A 331 TYR A 345 1 15 HELIX 18 18 HIS A 356 GLY A 365 1 10 HELIX 19 19 LEU A 381 TYR A 389 1 9 HELIX 20 20 THR A 398 VAL A 405 1 8 HELIX 21 21 SER A 409 ASP A 415 1 7 HELIX 22 22 ASN A 427 SER A 443 1 17 HELIX 23 23 ARG A 444 MET A 456 1 13 HELIX 24 24 SER A 461 LYS A 477 1 17 SHEET 1 A 9 GLN A 55 ARG A 60 0 SHEET 2 A 9 ILE A 67 TYR A 74 -1 O LEU A 69 N VAL A 57 SHEET 3 A 9 VAL A 77 ASP A 83 -1 O ILE A 79 N GLY A 72 SHEET 4 A 9 ASP A 36 PRO A 42 1 N VAL A 39 O TYR A 80 SHEET 5 A 9 GLN A 2 VAL A 6 1 N HIS A 5 O LEU A 40 SHEET 6 A 9 VAL A 132 HIS A 136 1 O HIS A 134 N LEU A 4 SHEET 7 A 9 LYS A 155 VAL A 160 1 O VAL A 157 N ALA A 135 SHEET 8 A 9 HIS A 207 ALA A 210 1 O THR A 209 N VAL A 160 SHEET 9 A 9 LEU A 241 GLY A 243 1 O SER A 242 N ILE A 208 SHEET 1 B 3 MET A 168 PHE A 169 0 SHEET 2 B 3 GLN A 194 SER A 196 -1 O ILE A 195 N PHE A 169 SHEET 3 B 3 GLU A 190 PHE A 191 -1 N PHE A 191 O GLN A 194 SHEET 1 C 6 VAL A 349 ILE A 353 0 SHEET 2 C 6 GLN A 323 GLY A 330 1 N LEU A 326 O GLN A 352 SHEET 3 C 6 LEU A 294 LEU A 301 1 N PHE A 295 O GLN A 323 SHEET 4 C 6 VAL A 369 VAL A 372 1 O LEU A 371 N ALA A 296 SHEET 5 C 6 LEU A 392 ARG A 396 1 O LEU A 394 N VAL A 372 SHEET 6 C 6 PHE A 421 PHE A 423 1 O PHE A 421 N PRO A 393 CISPEP 1 PHE A 11 PRO A 12 0 2.01 CRYST1 125.841 125.841 153.263 90.00 90.00 90.00 I 41 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007947 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007947 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006525 0.00000