HEADER HYDROLASE 30-MAR-09 3GUL TITLE T4 LYSOZYME M102E/L99A MUTANT WITH BURIED CHARGE IN APOLAR CAVITY-- TITLE 2 ETHYLBENZENE BINDING COMPND MOL_ID: 1; COMPND 2 MOLECULE: LYSOZYME; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: LYSIS PROTEIN, MURAMIDASE, ENDOLYSIN; COMPND 5 EC: 3.2.1.17; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE T4; SOURCE 3 ORGANISM_TAXID: 10665; SOURCE 4 GENE: E; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: RR1; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: P1403 KEYWDS T4 LYSOZYME, APOLAR CAVITY, BURIED CHARGE, LIGAND BINDING, KEYWDS 2 ANTIMICROBIAL, BACTERIOLYTIC ENZYME, GLYCOSIDASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR L.LIU,B.W.MATTHEWS REVDAT 7 06-SEP-23 3GUL 1 REMARK REVDAT 6 13-OCT-21 3GUL 1 REMARK SEQADV LINK REVDAT 5 01-NOV-17 3GUL 1 REMARK REVDAT 4 25-DEC-13 3GUL 1 HET HETATM HETNAM REVDAT 3 13-JUL-11 3GUL 1 VERSN REVDAT 2 06-OCT-09 3GUL 1 JRNL REVDAT 1 25-AUG-09 3GUL 0 JRNL AUTH L.LIU,W.A.BAASE,M.M.MICHAEL,B.W.MATTHEWS JRNL TITL USE OF STABILIZING MUTATIONS TO ENGINEER A CHARGED GROUP JRNL TITL 2 WITHIN A LIGAND-BINDING HYDROPHOBIC CAVITY IN T4 LYSOZYME. JRNL REF BIOCHEMISTRY V. 48 8842 2009 JRNL REFN ISSN 0006-2960 JRNL PMID 19663503 JRNL DOI 10.1021/BI900685J REMARK 2 REMARK 2 RESOLUTION. 2.07 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.07 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.05 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 17734 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.240 REMARK 3 R VALUE (WORKING SET) : 0.237 REMARK 3 FREE R VALUE : 0.293 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 957 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.07 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.13 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1302 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.27 REMARK 3 BIN R VALUE (WORKING SET) : 0.3040 REMARK 3 BIN FREE R VALUE SET COUNT : 59 REMARK 3 BIN FREE R VALUE : 0.3620 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2586 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 26 REMARK 3 SOLVENT ATOMS : 93 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.25 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.14000 REMARK 3 B22 (A**2) : 1.14000 REMARK 3 B33 (A**2) : -2.28000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.319 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.243 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.237 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 20.105 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.939 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.901 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2696 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3628 ; 1.172 ; 1.966 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 330 ; 5.199 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 128 ;33.506 ;23.281 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 496 ;16.788 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;18.681 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 394 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2032 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1281 ; 0.200 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1836 ; 0.298 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 117 ; 0.160 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 29 ; 0.254 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 3 ; 0.131 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1688 ; 0.550 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2618 ; 0.899 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1158 ; 1.499 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1010 ; 2.371 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 5 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 1 A 12 1 REMARK 3 1 B 1 B 12 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 100 ; 0.03 ; 0.05 REMARK 3 TIGHT THERMAL 1 A (A**2): 100 ; 0.09 ; 0.50 REMARK 3 REMARK 3 NCS GROUP NUMBER : 2 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 13 A 26 4 REMARK 3 1 B 13 B 26 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 2 A (A): 123 ; 0.30 ; 0.50 REMARK 3 MEDIUM THERMAL 2 A (A**2): 123 ; 0.33 ; 2.00 REMARK 3 REMARK 3 NCS GROUP NUMBER : 3 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 27 A 37 1 REMARK 3 1 B 27 B 37 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 3 A (A): 79 ; 0.03 ; 0.05 REMARK 3 TIGHT THERMAL 3 A (A**2): 79 ; 0.08 ; 0.50 REMARK 3 REMARK 3 NCS GROUP NUMBER : 4 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 38 A 50 4 REMARK 3 1 B 38 B 50 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 4 A (A): 96 ; 0.23 ; 0.50 REMARK 3 MEDIUM THERMAL 4 A (A**2): 96 ; 0.35 ; 2.00 REMARK 3 REMARK 3 NCS GROUP NUMBER : 5 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 51 A 162 1 REMARK 3 1 B 51 B 162 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 5 A (A): 916 ; 0.03 ; 0.05 REMARK 3 TIGHT THERMAL 5 A (A**2): 916 ; 0.08 ; 0.50 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 12 REMARK 3 ORIGIN FOR THE GROUP (A): -0.6342 13.3377 -5.4140 REMARK 3 T TENSOR REMARK 3 T11: -0.1736 T22: 0.0235 REMARK 3 T33: -0.0281 T12: -0.0345 REMARK 3 T13: -0.0280 T23: 0.0392 REMARK 3 L TENSOR REMARK 3 L11: 7.6469 L22: 3.3095 REMARK 3 L33: 19.9501 L12: -1.2125 REMARK 3 L13: 3.9563 L23: 6.8431 REMARK 3 S TENSOR REMARK 3 S11: -0.1362 S12: 0.2651 S13: 0.1296 REMARK 3 S21: -0.6422 S22: -0.3018 S23: -0.3408 REMARK 3 S31: -0.8355 S32: -1.7340 S33: 0.4381 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 13 A 50 REMARK 3 ORIGIN FOR THE GROUP (A): -5.3812 11.4479 13.1261 REMARK 3 T TENSOR REMARK 3 T11: -0.1596 T22: -0.1788 REMARK 3 T33: -0.0810 T12: -0.0464 REMARK 3 T13: 0.0201 T23: -0.0522 REMARK 3 L TENSOR REMARK 3 L11: 7.2220 L22: 7.0118 REMARK 3 L33: 3.9971 L12: 1.6077 REMARK 3 L13: -0.9991 L23: -5.2476 REMARK 3 S TENSOR REMARK 3 S11: -0.0047 S12: 0.0128 S13: -0.1920 REMARK 3 S21: 0.3517 S22: -0.0654 S23: 0.6035 REMARK 3 S31: -0.2595 S32: -0.0124 S33: 0.0701 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 51 A 162 REMARK 3 ORIGIN FOR THE GROUP (A): 4.2953 3.9700 -2.1452 REMARK 3 T TENSOR REMARK 3 T11: -0.0274 T22: -0.1633 REMARK 3 T33: -0.1248 T12: -0.0612 REMARK 3 T13: -0.0176 T23: 0.0110 REMARK 3 L TENSOR REMARK 3 L11: 2.3665 L22: 2.1872 REMARK 3 L33: 5.1153 L12: -0.2392 REMARK 3 L13: 0.7640 L23: 1.1881 REMARK 3 S TENSOR REMARK 3 S11: -0.0133 S12: 0.0151 S13: -0.1161 REMARK 3 S21: 0.3240 S22: -0.0478 S23: 0.0809 REMARK 3 S31: 0.6049 S32: -0.4183 S33: 0.0612 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 168 A 217 REMARK 3 RESIDUE RANGE : B 167 B 221 REMARK 3 ORIGIN FOR THE GROUP (A): 8.3845 14.8017 -6.2064 REMARK 3 T TENSOR REMARK 3 T11: 0.0141 T22: 0.0503 REMARK 3 T33: 0.1047 T12: 0.0644 REMARK 3 T13: -0.0367 T23: -0.0134 REMARK 3 L TENSOR REMARK 3 L11: 0.4448 L22: 0.1991 REMARK 3 L33: 0.4236 L12: 0.2976 REMARK 3 L13: -0.4341 L23: -0.2904 REMARK 3 S TENSOR REMARK 3 S11: 0.0122 S12: -0.0494 S13: -0.0930 REMARK 3 S21: 0.0113 S22: -0.0271 S23: -0.1144 REMARK 3 S31: 0.0594 S32: 0.1681 S33: 0.0149 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 12 REMARK 3 ORIGIN FOR THE GROUP (A): 11.0613 25.3461 -6.7920 REMARK 3 T TENSOR REMARK 3 T11: 0.0166 T22: -0.1949 REMARK 3 T33: -0.0183 T12: -0.0168 REMARK 3 T13: -0.0174 T23: -0.0413 REMARK 3 L TENSOR REMARK 3 L11: 3.2728 L22: 10.3110 REMARK 3 L33: 18.6697 L12: -0.9304 REMARK 3 L13: 4.6810 L23: 9.6375 REMARK 3 S TENSOR REMARK 3 S11: -0.4404 S12: -0.5832 S13: 0.0128 REMARK 3 S21: 0.0040 S22: -0.0556 S23: 0.5466 REMARK 3 S31: -1.1557 S32: -0.5231 S33: 0.4960 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 13 B 50 REMARK 3 ORIGIN FOR THE GROUP (A): 12.2395 30.7148 -24.9694 REMARK 3 T TENSOR REMARK 3 T11: 0.8415 T22: 0.1346 REMARK 3 T33: -0.0496 T12: -0.6645 REMARK 3 T13: -0.3158 T23: 0.2522 REMARK 3 L TENSOR REMARK 3 L11: 19.9553 L22: 7.2195 REMARK 3 L33: 25.1209 L12: -0.0377 REMARK 3 L13: 13.5150 L23: -0.1629 REMARK 3 S TENSOR REMARK 3 S11: -2.4375 S12: 2.8135 S13: 1.7287 REMARK 3 S21: -0.3139 S22: 0.4921 S23: -0.3909 REMARK 3 S31: -4.9197 S32: 3.0235 S33: 1.9454 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 51 B 162 REMARK 3 ORIGIN FOR THE GROUP (A): 20.6072 20.7280 -10.1503 REMARK 3 T TENSOR REMARK 3 T11: -0.1318 T22: 0.0158 REMARK 3 T33: -0.1159 T12: -0.1262 REMARK 3 T13: 0.0175 T23: -0.0237 REMARK 3 L TENSOR REMARK 3 L11: 1.9308 L22: 2.6980 REMARK 3 L33: 7.5602 L12: -1.0331 REMARK 3 L13: 0.9281 L23: 0.7203 REMARK 3 S TENSOR REMARK 3 S11: -0.0709 S12: 0.1727 S13: 0.1367 REMARK 3 S21: -0.0867 S22: 0.1052 S23: -0.1907 REMARK 3 S31: -0.6753 S32: 1.1111 S33: -0.0342 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3GUL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-APR-09. REMARK 100 THE DEPOSITION ID IS D_1000052325. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-OCT-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : KOHZU REMARK 200 OPTICS : SI(111) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18739 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.070 REMARK 200 RESOLUTION RANGE LOW (A) : 46.050 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.04600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 27.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.07 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.33100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 3GUI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG 8000, 0.14M MAGNESIUM/CALCIUM REMARK 280 SULFATE, 0.1M PIPES, PH 6.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.66600 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 96.99900 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 32.33300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 163 REMARK 465 LEU A 164 REMARK 465 ASN B 163 REMARK 465 LEU B 164 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 29 78.00 -102.95 REMARK 500 CYS A 142 66.63 -118.39 REMARK 500 ILE B 29 79.57 -104.07 REMARK 500 CYS B 142 64.44 -117.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PYJ A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 165 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 166 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PYJ B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 165 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3GUI RELATED DB: PDB REMARK 900 T4 LYSOZYME M102E/L99A MUTANT WITH BURIED CHARGE IN APOLAR CAVITY-- REMARK 900 APO STRUCTURE REMARK 900 RELATED ID: 3GUJ RELATED DB: PDB REMARK 900 T4 LYSOZYME M102E/L99A MUTANT WITH BURIED CHARGE IN APOLAR CAVITY-- REMARK 900 BENZENE BINDING REMARK 900 RELATED ID: 3GUK RELATED DB: PDB REMARK 900 T4 LYSOZYME M102E/L99A MUTANT WITH BURIED CHARGE IN APOLAR CAVITY-- REMARK 900 TOLUENE BINDING REMARK 900 RELATED ID: 3GUM RELATED DB: PDB REMARK 900 T4 LYSOZYME M102E/L99A MUTANT WITH BURIED CHARGE IN APOLAR CAVITY-- REMARK 900 P-XYLENE BINDING REMARK 900 RELATED ID: 3GUN RELATED DB: PDB REMARK 900 T4 LYSOZYME M102E/L99A MUTANT WITH BURIED CHARGE IN APOLAR CAVITY-- REMARK 900 ANILINE BINDING REMARK 900 RELATED ID: 3GUO RELATED DB: PDB REMARK 900 T4 LYSOZYME M102E/L99A MUTANT WITH BURIED CHARGE IN APOLAR CAVITY-- REMARK 900 PHENOL BINDING REMARK 900 RELATED ID: 3GUP RELATED DB: PDB REMARK 900 T4 LYSOZYME M102E/L99A MUTANT WITH BURIED CHARGE IN APOLAR CAVITY-- REMARK 900 PYRIDINE BINDING DBREF 3GUL A 1 164 UNP P00720 LYS_BPT4 1 164 DBREF 3GUL B 1 164 UNP P00720 LYS_BPT4 1 164 SEQADV 3GUL CYS A 21 UNP P00720 THR 21 ENGINEERED MUTATION SEQADV 3GUL ASP A 38 UNP P00720 SER 38 ENGINEERED MUTATION SEQADV 3GUL ALA A 99 UNP P00720 LEU 99 ENGINEERED MUTATION SEQADV 3GUL GLU A 102 UNP P00720 MET 102 ENGINEERED MUTATION SEQADV 3GUL VAL A 108 UNP P00720 GLU 108 ENGINEERED MUTATION SEQADV 3GUL VAL A 117 UNP P00720 SER 117 ENGINEERED MUTATION SEQADV 3GUL CYS A 142 UNP P00720 THR 142 ENGINEERED MUTATION SEQADV 3GUL ASP A 144 UNP P00720 ASN 144 ENGINEERED MUTATION SEQADV 3GUL CYS B 21 UNP P00720 THR 21 ENGINEERED MUTATION SEQADV 3GUL ASP B 38 UNP P00720 SER 38 ENGINEERED MUTATION SEQADV 3GUL ALA B 99 UNP P00720 LEU 99 ENGINEERED MUTATION SEQADV 3GUL GLU B 102 UNP P00720 MET 102 ENGINEERED MUTATION SEQADV 3GUL VAL B 108 UNP P00720 GLU 108 ENGINEERED MUTATION SEQADV 3GUL VAL B 117 UNP P00720 SER 117 ENGINEERED MUTATION SEQADV 3GUL CYS B 142 UNP P00720 THR 142 ENGINEERED MUTATION SEQADV 3GUL ASP B 144 UNP P00720 ASN 144 ENGINEERED MUTATION SEQRES 1 A 164 MET ASN ILE PHE GLU MET LEU ARG ILE ASP GLU GLY LEU SEQRES 2 A 164 ARG LEU LYS ILE TYR LYS ASP CYS GLU GLY TYR TYR THR SEQRES 3 A 164 ILE GLY ILE GLY HIS LEU LEU THR LYS SER PRO ASP LEU SEQRES 4 A 164 ASN ALA ALA LYS SER GLU LEU ASP LYS ALA ILE GLY ARG SEQRES 5 A 164 ASN CYS ASN GLY VAL ILE THR LYS ASP GLU ALA GLU LYS SEQRES 6 A 164 LEU PHE ASN GLN ASP VAL ASP ALA ALA VAL ARG GLY ILE SEQRES 7 A 164 LEU ARG ASN ALA LYS LEU LYS PRO VAL TYR ASP SER LEU SEQRES 8 A 164 ASP ALA VAL ARG ARG CME ALA ALA ILE ASN GLU VAL PHE SEQRES 9 A 164 GLN MET GLY VAL THR GLY VAL ALA GLY PHE THR ASN VAL SEQRES 10 A 164 LEU ARG MET LEU GLN GLN LYS ARG TRP ASP GLU ALA ALA SEQRES 11 A 164 VAL ASN LEU ALA LYS SER ARG TRP TYR ASN GLN CYS PRO SEQRES 12 A 164 ASP ARG ALA LYS ARG VAL ILE THR THR PHE ARG THR GLY SEQRES 13 A 164 THR TRP ASP ALA TYR LYS ASN LEU SEQRES 1 B 164 MET ASN ILE PHE GLU MET LEU ARG ILE ASP GLU GLY LEU SEQRES 2 B 164 ARG LEU LYS ILE TYR LYS ASP CYS GLU GLY TYR TYR THR SEQRES 3 B 164 ILE GLY ILE GLY HIS LEU LEU THR LYS SER PRO ASP LEU SEQRES 4 B 164 ASN ALA ALA LYS SER GLU LEU ASP LYS ALA ILE GLY ARG SEQRES 5 B 164 ASN CYS ASN GLY VAL ILE THR LYS ASP GLU ALA GLU LYS SEQRES 6 B 164 LEU PHE ASN GLN ASP VAL ASP ALA ALA VAL ARG GLY ILE SEQRES 7 B 164 LEU ARG ASN ALA LYS LEU LYS PRO VAL TYR ASP SER LEU SEQRES 8 B 164 ASP ALA VAL ARG ARG CME ALA ALA ILE ASN GLU VAL PHE SEQRES 9 B 164 GLN MET GLY VAL THR GLY VAL ALA GLY PHE THR ASN VAL SEQRES 10 B 164 LEU ARG MET LEU GLN GLN LYS ARG TRP ASP GLU ALA ALA SEQRES 11 B 164 VAL ASN LEU ALA LYS SER ARG TRP TYR ASN GLN CYS PRO SEQRES 12 B 164 ASP ARG ALA LYS ARG VAL ILE THR THR PHE ARG THR GLY SEQRES 13 B 164 THR TRP ASP ALA TYR LYS ASN LEU MODRES 3GUL CME A 97 CYS S,S-(2-HYDROXYETHYL)THIOCYSTEINE MODRES 3GUL CME B 97 CYS S,S-(2-HYDROXYETHYL)THIOCYSTEINE HET CME A 97 10 HET CME B 97 10 HET PYJ A 501 8 HET ACT A 165 4 HET ACT A 166 4 HET PYJ B 501 8 HET CA B 165 1 HET CL B 166 1 HETNAM CME S,S-(2-HYDROXYETHYL)THIOCYSTEINE HETNAM PYJ PHENYLETHANE HETNAM ACT ACETATE ION HETNAM CA CALCIUM ION HETNAM CL CHLORIDE ION FORMUL 1 CME 2(C5 H11 N O3 S2) FORMUL 3 PYJ 2(C8 H10) FORMUL 4 ACT 2(C2 H3 O2 1-) FORMUL 7 CA CA 2+ FORMUL 8 CL CL 1- FORMUL 9 HOH *93(H2 O) HELIX 1 1 ASN A 2 GLY A 12 1 11 HELIX 2 2 ASP A 38 GLY A 51 1 14 HELIX 3 3 THR A 59 ASN A 81 1 23 HELIX 4 4 LYS A 83 LEU A 91 1 9 HELIX 5 5 ASP A 92 GLY A 113 1 22 HELIX 6 6 PHE A 114 GLN A 123 1 10 HELIX 7 7 ARG A 125 ALA A 134 1 10 HELIX 8 8 SER A 136 CYS A 142 1 7 HELIX 9 9 CYS A 142 GLY A 156 1 15 HELIX 10 10 TRP A 158 LYS A 162 5 5 HELIX 11 11 ASN B 2 GLY B 12 1 11 HELIX 12 12 ASP B 38 GLY B 51 1 14 HELIX 13 13 THR B 59 ASN B 81 1 23 HELIX 14 14 LYS B 83 LEU B 91 1 9 HELIX 15 15 ASP B 92 GLY B 113 1 22 HELIX 16 16 PHE B 114 GLN B 123 1 10 HELIX 17 17 ARG B 125 ALA B 134 1 10 HELIX 18 18 SER B 136 CYS B 142 1 7 HELIX 19 19 CYS B 142 GLY B 156 1 15 HELIX 20 20 TRP B 158 LYS B 162 5 5 SHEET 1 A 3 ARG A 14 LYS A 19 0 SHEET 2 A 3 TYR A 25 GLY A 28 -1 O THR A 26 N TYR A 18 SHEET 3 A 3 HIS A 31 THR A 34 -1 O LEU A 33 N TYR A 25 SHEET 1 B 3 TYR B 18 LYS B 19 0 SHEET 2 B 3 TYR B 25 ILE B 27 -1 O THR B 26 N TYR B 18 SHEET 3 B 3 HIS B 31 THR B 34 -1 O LEU B 33 N TYR B 25 SSBOND 1 CYS A 21 CYS A 142 1555 1555 2.04 SSBOND 2 CYS B 21 CYS B 142 1555 1555 2.03 LINK C ARG A 96 N CME A 97 1555 1555 1.33 LINK C CME A 97 N ALA A 98 1555 1555 1.33 LINK C ARG B 96 N CME B 97 1555 1555 1.33 LINK C CME B 97 N ALA B 98 1555 1555 1.34 LINK OH TYR A 88 CA CA B 165 1555 1555 3.13 CISPEP 1 CYS A 54 ASN A 55 0 -13.12 CISPEP 2 CYS B 54 ASN B 55 0 -13.95 SITE 1 AC1 5 ALA A 99 GLU A 102 VAL A 111 LEU A 118 SITE 2 AC1 5 PHE A 153 SITE 1 AC2 4 ARG A 76 ARG A 80 ASP B 92 ALA B 93 SITE 1 AC3 3 ALA A 93 LEU B 79 ARG B 80 SITE 1 AC4 4 GLU B 102 VAL B 103 VAL B 111 PHE B 153 SITE 1 AC5 3 TYR A 88 TYR B 88 ARG B 96 CRYST1 49.274 49.274 129.332 90.00 90.00 90.00 P 43 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020295 0.000000 0.000000 0.00000 SCALE2 0.000000 0.020295 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007732 0.00000