HEADER HYDROLASE 30-MAR-09 3GUM TITLE T4 LYSOZYME M102E/L99A MUTANT WITH BURIED CHARGE IN APOLAR CAVITY--P- TITLE 2 XYLENE BINDING COMPND MOL_ID: 1; COMPND 2 MOLECULE: LYSOZYME; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: LYSIS PROTEIN, MURAMIDASE, ENDOLYSIN; COMPND 5 EC: 3.2.1.17; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE T4; SOURCE 3 ORGANISM_TAXID: 10665; SOURCE 4 GENE: E; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: RR1; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: P1403 KEYWDS T4 LYSOZYME, APOLAR CAVITY, BURIED CHARGE, LIGAND BINDING, KEYWDS 2 ANTIMICROBIAL, BACTERIOLYTIC ENZYME, GLYCOSIDASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR L.LIU,B.W.MATTHEWS REVDAT 6 06-SEP-23 3GUM 1 REMARK REVDAT 5 13-OCT-21 3GUM 1 REMARK SEQADV LINK REVDAT 4 01-NOV-17 3GUM 1 REMARK REVDAT 3 13-JUL-11 3GUM 1 VERSN REVDAT 2 06-OCT-09 3GUM 1 JRNL REVDAT 1 25-AUG-09 3GUM 0 JRNL AUTH L.LIU,W.A.BAASE,M.M.MICHAEL,B.W.MATTHEWS JRNL TITL USE OF STABILIZING MUTATIONS TO ENGINEER A CHARGED GROUP JRNL TITL 2 WITHIN A LIGAND-BINDING HYDROPHOBIC CAVITY IN T4 LYSOZYME. JRNL REF BIOCHEMISTRY V. 48 8842 2009 JRNL REFN ISSN 0006-2960 JRNL PMID 19663503 JRNL DOI 10.1021/BI900685J REMARK 2 REMARK 2 RESOLUTION. 2.24 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.24 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.42 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 14252 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.220 REMARK 3 R VALUE (WORKING SET) : 0.218 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 758 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.24 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.30 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1003 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.89 REMARK 3 BIN R VALUE (WORKING SET) : 0.2610 REMARK 3 BIN FREE R VALUE SET COUNT : 66 REMARK 3 BIN FREE R VALUE : 0.2980 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2586 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 28 REMARK 3 SOLVENT ATOMS : 68 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.05 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.40000 REMARK 3 B22 (A**2) : 1.40000 REMARK 3 B33 (A**2) : -2.79000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.443 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.262 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.222 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 20.032 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.941 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.917 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2676 ; 0.023 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3602 ; 1.584 ; 1.966 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 326 ; 5.878 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 128 ;37.195 ;23.281 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 488 ;18.025 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;20.362 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 392 ; 0.101 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2018 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1275 ; 0.220 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1814 ; 0.304 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 97 ; 0.176 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 24 ; 0.274 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 4 ; 0.392 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1672 ; 0.713 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2596 ; 1.208 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1162 ; 2.063 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1006 ; 3.295 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 5 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 1 A 12 1 REMARK 3 1 B 1 B 12 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 100 ; 0.06 ; 0.05 REMARK 3 TIGHT THERMAL 1 A (A**2): 100 ; 0.14 ; 0.50 REMARK 3 REMARK 3 NCS GROUP NUMBER : 2 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 13 A 26 4 REMARK 3 1 B 13 B 26 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 2 A (A): 123 ; 0.39 ; 0.50 REMARK 3 MEDIUM THERMAL 2 A (A**2): 123 ; 0.54 ; 2.00 REMARK 3 REMARK 3 NCS GROUP NUMBER : 3 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 27 A 37 1 REMARK 3 1 B 27 B 37 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 3 A (A): 79 ; 0.05 ; 0.05 REMARK 3 TIGHT THERMAL 3 A (A**2): 79 ; 0.13 ; 0.50 REMARK 3 REMARK 3 NCS GROUP NUMBER : 4 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 38 A 50 4 REMARK 3 1 B 38 B 50 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 4 A (A): 96 ; 0.32 ; 0.50 REMARK 3 MEDIUM THERMAL 4 A (A**2): 96 ; 0.55 ; 2.00 REMARK 3 REMARK 3 NCS GROUP NUMBER : 5 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 51 A 162 1 REMARK 3 1 B 51 B 162 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 5 A (A): 907 ; 0.05 ; 0.05 REMARK 3 TIGHT THERMAL 5 A (A**2): 907 ; 0.14 ; 0.50 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 12 REMARK 3 ORIGIN FOR THE GROUP (A): -0.5596 13.3674 -5.3721 REMARK 3 T TENSOR REMARK 3 T11: -0.0853 T22: -0.0236 REMARK 3 T33: -0.0209 T12: -0.0274 REMARK 3 T13: -0.0483 T23: -0.0283 REMARK 3 L TENSOR REMARK 3 L11: 6.5468 L22: 0.3038 REMARK 3 L33: 15.9332 L12: 1.0105 REMARK 3 L13: 7.1441 L23: 2.1994 REMARK 3 S TENSOR REMARK 3 S11: -0.0379 S12: -0.3057 S13: 0.2506 REMARK 3 S21: -0.3412 S22: -0.3755 S23: 0.1544 REMARK 3 S31: -0.8590 S32: -1.0085 S33: 0.4134 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 13 A 50 REMARK 3 ORIGIN FOR THE GROUP (A): -5.2832 11.4146 13.2283 REMARK 3 T TENSOR REMARK 3 T11: -0.2756 T22: -0.2015 REMARK 3 T33: -0.0762 T12: 0.0501 REMARK 3 T13: -0.0037 T23: -0.0492 REMARK 3 L TENSOR REMARK 3 L11: 4.3557 L22: 9.9660 REMARK 3 L33: 7.3107 L12: 2.3934 REMARK 3 L13: -0.4538 L23: -3.3090 REMARK 3 S TENSOR REMARK 3 S11: -0.0055 S12: -0.0937 S13: -0.2304 REMARK 3 S21: 0.4232 S22: 0.1654 S23: 0.4058 REMARK 3 S31: -0.4593 S32: -0.1184 S33: -0.1599 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 51 A 162 REMARK 3 ORIGIN FOR THE GROUP (A): 4.4003 3.9976 -2.1147 REMARK 3 T TENSOR REMARK 3 T11: -0.0887 T22: -0.1871 REMARK 3 T33: -0.1259 T12: -0.0660 REMARK 3 T13: -0.0107 T23: 0.0256 REMARK 3 L TENSOR REMARK 3 L11: 2.4473 L22: 1.5196 REMARK 3 L33: 5.5134 L12: 0.2008 REMARK 3 L13: 0.7946 L23: 1.8229 REMARK 3 S TENSOR REMARK 3 S11: 0.0896 S12: -0.0617 S13: -0.1221 REMARK 3 S21: 0.1978 S22: -0.1212 S23: -0.0180 REMARK 3 S31: 0.5038 S32: -0.4108 S33: 0.0316 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 4 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 165 A 166 REMARK 3 RESIDUE RANGE : A 167 A 215 REMARK 3 RESIDUE RANGE : B 165 B 168 REMARK 3 RESIDUE RANGE : B 169 B 216 REMARK 3 ORIGIN FOR THE GROUP (A): 9.4783 14.0700 -5.2489 REMARK 3 T TENSOR REMARK 3 T11: 0.0363 T22: -0.0122 REMARK 3 T33: 0.0254 T12: 0.0527 REMARK 3 T13: -0.0161 T23: -0.0024 REMARK 3 L TENSOR REMARK 3 L11: 0.7070 L22: 0.7374 REMARK 3 L33: 1.2531 L12: 0.6978 REMARK 3 L13: -0.3997 L23: -0.1708 REMARK 3 S TENSOR REMARK 3 S11: -0.0279 S12: -0.0558 S13: 0.1166 REMARK 3 S21: -0.0688 S22: -0.0272 S23: -0.0162 REMARK 3 S31: -0.1089 S32: -0.0167 S33: 0.0551 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 12 REMARK 3 ORIGIN FOR THE GROUP (A): 11.0503 25.5848 -6.7859 REMARK 3 T TENSOR REMARK 3 T11: 0.0088 T22: -0.1610 REMARK 3 T33: 0.0114 T12: -0.0637 REMARK 3 T13: -0.0034 T23: -0.0665 REMARK 3 L TENSOR REMARK 3 L11: 2.4678 L22: 15.2685 REMARK 3 L33: 29.1453 L12: 0.5339 REMARK 3 L13: 8.4639 L23: 3.1587 REMARK 3 S TENSOR REMARK 3 S11: -0.5625 S12: -0.5002 S13: 0.0932 REMARK 3 S21: -0.0645 S22: -0.0333 S23: 0.7479 REMARK 3 S31: -1.7395 S32: -0.6898 S33: 0.5957 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 13 B 50 REMARK 3 ORIGIN FOR THE GROUP (A): 12.1283 31.0893 -24.9145 REMARK 3 T TENSOR REMARK 3 T11: 0.7967 T22: 0.1668 REMARK 3 T33: -0.0545 T12: -0.6832 REMARK 3 T13: -0.3443 T23: 0.2835 REMARK 3 L TENSOR REMARK 3 L11: 16.4336 L22: 8.5013 REMARK 3 L33: 23.6853 L12: 1.2009 REMARK 3 L13: 11.6535 L23: 0.0412 REMARK 3 S TENSOR REMARK 3 S11: -1.9990 S12: 2.4991 S13: 1.4103 REMARK 3 S21: -0.1982 S22: 0.1196 S23: -0.4608 REMARK 3 S31: -4.6503 S32: 3.2966 S33: 1.8794 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 51 B 162 REMARK 3 ORIGIN FOR THE GROUP (A): 20.7161 20.9752 -10.2124 REMARK 3 T TENSOR REMARK 3 T11: -0.1224 T22: 0.0070 REMARK 3 T33: -0.0973 T12: -0.1719 REMARK 3 T13: 0.0381 T23: -0.0186 REMARK 3 L TENSOR REMARK 3 L11: 2.0098 L22: 2.9373 REMARK 3 L33: 7.6603 L12: -0.7031 REMARK 3 L13: 1.5461 L23: 0.7055 REMARK 3 S TENSOR REMARK 3 S11: -0.1331 S12: 0.1723 S13: 0.1358 REMARK 3 S21: -0.1963 S22: 0.1229 S23: -0.2341 REMARK 3 S31: -0.8164 S32: 1.1381 S33: 0.0102 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3GUM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-APR-09. REMARK 100 THE DEPOSITION ID IS D_1000052326. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-OCT-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : KOHZU REMARK 200 OPTICS : SI(111) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15049 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.240 REMARK 200 RESOLUTION RANGE LOW (A) : 46.420 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.06100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 32.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.24 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.33 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.10 REMARK 200 R MERGE FOR SHELL (I) : 0.39700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 3GUI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG 8000, 0.14M MAGNESIUM/CALCIUM REMARK 280 SULFATE, 0.1M PIPES, PH 6.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.85500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 97.28250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 32.42750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 163 REMARK 465 LEU A 164 REMARK 465 ASN B 163 REMARK 465 LEU B 164 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 124 32.39 70.33 REMARK 500 LEU B 15 37.26 -87.49 REMARK 500 LEU B 39 -5.56 -49.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PXY A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 165 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 166 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PXY B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 165 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 167 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 168 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3GUI RELATED DB: PDB REMARK 900 T4 LYSOZYME M102E/L99A MUTANT WITH BURIED CHARGE IN APOLAR CAVITY-- REMARK 900 APO STRUCTURE REMARK 900 RELATED ID: 3GUJ RELATED DB: PDB REMARK 900 T4 LYSOZYME M102E/L99A MUTANT WITH BURIED CHARGE IN APOLAR CAVITY-- REMARK 900 BENZENE BINDING REMARK 900 RELATED ID: 3GUK RELATED DB: PDB REMARK 900 T4 LYSOZYME M102E/L99A MUTANT WITH BURIED CHARGE IN APOLAR CAVITY-- REMARK 900 TOLUENE BINDING REMARK 900 RELATED ID: 3GUL RELATED DB: PDB REMARK 900 T4 LYSOZYME M102E/L99A MUTANT WITH BURIED CHARGE IN APOLAR CAVITY-- REMARK 900 ETHYLBENZENE BINDING REMARK 900 RELATED ID: 3GUN RELATED DB: PDB REMARK 900 T4 LYSOZYME M102E/L99A MUTANT WITH BURIED CHARGE IN APOLAR CAVITY-- REMARK 900 ANILINE BINDING REMARK 900 RELATED ID: 3GUO RELATED DB: PDB REMARK 900 T4 LYSOZYME M102E/L99A MUTANT WITH BURIED CHARGE IN APOLAR CAVITY-- REMARK 900 PHENOL BINDING REMARK 900 RELATED ID: 3GUP RELATED DB: PDB REMARK 900 T4 LYSOZYME M102E/L99A MUTANT WITH BURIED CHARGE IN APOLAR CAVITY-- REMARK 900 PYRIDINE BINDING DBREF 3GUM A 1 164 UNP P00720 LYS_BPT4 1 164 DBREF 3GUM B 1 164 UNP P00720 LYS_BPT4 1 164 SEQADV 3GUM CYS A 21 UNP P00720 THR 21 ENGINEERED MUTATION SEQADV 3GUM ASP A 38 UNP P00720 SER 38 ENGINEERED MUTATION SEQADV 3GUM ALA A 99 UNP P00720 LEU 99 ENGINEERED MUTATION SEQADV 3GUM GLU A 102 UNP P00720 MET 102 ENGINEERED MUTATION SEQADV 3GUM VAL A 108 UNP P00720 GLU 108 ENGINEERED MUTATION SEQADV 3GUM VAL A 117 UNP P00720 SER 117 ENGINEERED MUTATION SEQADV 3GUM CYS A 142 UNP P00720 THR 142 ENGINEERED MUTATION SEQADV 3GUM ASP A 144 UNP P00720 ASN 144 ENGINEERED MUTATION SEQADV 3GUM CYS B 21 UNP P00720 THR 21 ENGINEERED MUTATION SEQADV 3GUM ASP B 38 UNP P00720 SER 38 ENGINEERED MUTATION SEQADV 3GUM ALA B 99 UNP P00720 LEU 99 ENGINEERED MUTATION SEQADV 3GUM GLU B 102 UNP P00720 MET 102 ENGINEERED MUTATION SEQADV 3GUM VAL B 108 UNP P00720 GLU 108 ENGINEERED MUTATION SEQADV 3GUM VAL B 117 UNP P00720 SER 117 ENGINEERED MUTATION SEQADV 3GUM CYS B 142 UNP P00720 THR 142 ENGINEERED MUTATION SEQADV 3GUM ASP B 144 UNP P00720 ASN 144 ENGINEERED MUTATION SEQRES 1 A 164 MET ASN ILE PHE GLU MET LEU ARG ILE ASP GLU GLY LEU SEQRES 2 A 164 ARG LEU LYS ILE TYR LYS ASP CYS GLU GLY TYR TYR THR SEQRES 3 A 164 ILE GLY ILE GLY HIS LEU LEU THR LYS SER PRO ASP LEU SEQRES 4 A 164 ASN ALA ALA LYS SER GLU LEU ASP LYS ALA ILE GLY ARG SEQRES 5 A 164 ASN CYS ASN GLY VAL ILE THR LYS ASP GLU ALA GLU LYS SEQRES 6 A 164 LEU PHE ASN GLN ASP VAL ASP ALA ALA VAL ARG GLY ILE SEQRES 7 A 164 LEU ARG ASN ALA LYS LEU LYS PRO VAL TYR ASP SER LEU SEQRES 8 A 164 ASP ALA VAL ARG ARG CME ALA ALA ILE ASN GLU VAL PHE SEQRES 9 A 164 GLN MET GLY VAL THR GLY VAL ALA GLY PHE THR ASN VAL SEQRES 10 A 164 LEU ARG MET LEU GLN GLN LYS ARG TRP ASP GLU ALA ALA SEQRES 11 A 164 VAL ASN LEU ALA LYS SER ARG TRP TYR ASN GLN CYS PRO SEQRES 12 A 164 ASP ARG ALA LYS ARG VAL ILE THR THR PHE ARG THR GLY SEQRES 13 A 164 THR TRP ASP ALA TYR LYS ASN LEU SEQRES 1 B 164 MET ASN ILE PHE GLU MET LEU ARG ILE ASP GLU GLY LEU SEQRES 2 B 164 ARG LEU LYS ILE TYR LYS ASP CYS GLU GLY TYR TYR THR SEQRES 3 B 164 ILE GLY ILE GLY HIS LEU LEU THR LYS SER PRO ASP LEU SEQRES 4 B 164 ASN ALA ALA LYS SER GLU LEU ASP LYS ALA ILE GLY ARG SEQRES 5 B 164 ASN CYS ASN GLY VAL ILE THR LYS ASP GLU ALA GLU LYS SEQRES 6 B 164 LEU PHE ASN GLN ASP VAL ASP ALA ALA VAL ARG GLY ILE SEQRES 7 B 164 LEU ARG ASN ALA LYS LEU LYS PRO VAL TYR ASP SER LEU SEQRES 8 B 164 ASP ALA VAL ARG ARG CME ALA ALA ILE ASN GLU VAL PHE SEQRES 9 B 164 GLN MET GLY VAL THR GLY VAL ALA GLY PHE THR ASN VAL SEQRES 10 B 164 LEU ARG MET LEU GLN GLN LYS ARG TRP ASP GLU ALA ALA SEQRES 11 B 164 VAL ASN LEU ALA LYS SER ARG TRP TYR ASN GLN CYS PRO SEQRES 12 B 164 ASP ARG ALA LYS ARG VAL ILE THR THR PHE ARG THR GLY SEQRES 13 B 164 THR TRP ASP ALA TYR LYS ASN LEU MODRES 3GUM CME A 97 CYS S,S-(2-HYDROXYETHYL)THIOCYSTEINE MODRES 3GUM CME B 97 CYS S,S-(2-HYDROXYETHYL)THIOCYSTEINE HET CME A 97 10 HET CME B 97 10 HET PXY A 501 8 HET CL A 165 1 HET ACT A 166 4 HET PXY B 501 8 HET CA B 165 1 HET CL B 166 1 HET CL B 167 1 HET ACT B 168 4 HETNAM CME S,S-(2-HYDROXYETHYL)THIOCYSTEINE HETNAM PXY PARA-XYLENE HETNAM CL CHLORIDE ION HETNAM ACT ACETATE ION HETNAM CA CALCIUM ION FORMUL 1 CME 2(C5 H11 N O3 S2) FORMUL 3 PXY 2(C8 H10) FORMUL 4 CL 3(CL 1-) FORMUL 5 ACT 2(C2 H3 O2 1-) FORMUL 7 CA CA 2+ FORMUL 11 HOH *68(H2 O) HELIX 1 1 ASN A 2 GLY A 12 1 11 HELIX 2 2 ASP A 38 GLY A 51 1 14 HELIX 3 3 THR A 59 ASN A 81 1 23 HELIX 4 4 LEU A 84 LEU A 91 1 8 HELIX 5 5 ASP A 92 GLY A 107 1 16 HELIX 6 6 GLY A 107 GLY A 113 1 7 HELIX 7 7 PHE A 114 GLN A 123 1 10 HELIX 8 8 ARG A 125 ALA A 134 1 10 HELIX 9 9 SER A 136 CYS A 142 1 7 HELIX 10 10 CYS A 142 GLY A 156 1 15 HELIX 11 11 TRP A 158 LYS A 162 5 5 HELIX 12 12 ASN B 2 GLY B 12 1 11 HELIX 13 13 ASN B 40 GLY B 51 1 12 HELIX 14 14 THR B 59 ASN B 81 1 23 HELIX 15 15 LYS B 83 LEU B 91 1 9 HELIX 16 16 ASP B 92 GLY B 113 1 22 HELIX 17 17 PHE B 114 GLN B 123 1 10 HELIX 18 18 ARG B 125 ALA B 134 1 10 HELIX 19 19 SER B 136 CYS B 142 1 7 HELIX 20 20 CYS B 142 GLY B 156 1 15 HELIX 21 21 TRP B 158 LYS B 162 5 5 SHEET 1 A 3 ARG A 14 LYS A 19 0 SHEET 2 A 3 TYR A 25 GLY A 28 -1 O THR A 26 N TYR A 18 SHEET 3 A 3 HIS A 31 THR A 34 -1 O LEU A 33 N TYR A 25 SHEET 1 B 3 ARG B 14 LYS B 19 0 SHEET 2 B 3 TYR B 25 GLY B 28 -1 O THR B 26 N TYR B 18 SHEET 3 B 3 HIS B 31 THR B 34 -1 O LEU B 33 N TYR B 25 SSBOND 1 CYS A 21 CYS A 142 1555 1555 2.07 SSBOND 2 CYS B 21 CYS B 142 1555 1555 2.04 LINK C ARG A 96 N CME A 97 1555 1555 1.33 LINK C CME A 97 N ALA A 98 1555 1555 1.32 LINK C ARG B 96 N CME B 97 1555 1555 1.34 LINK C CME B 97 N ALA B 98 1555 1555 1.33 CISPEP 1 CYS A 54 ASN A 55 0 -11.16 CISPEP 2 CYS B 54 ASN B 55 0 -13.66 SITE 1 AC1 5 ALA A 99 GLU A 102 VAL A 111 LEU A 118 SITE 2 AC1 5 LEU A 121 SITE 1 AC2 3 CYS A 142 PRO A 143 ASP A 144 SITE 1 AC3 3 ARG A 76 ARG A 80 ALA B 93 SITE 1 AC4 7 LEU B 84 TYR B 88 ALA B 99 GLU B 102 SITE 2 AC4 7 VAL B 111 LEU B 118 LEU B 121 SITE 1 AC5 4 TYR A 88 ARG A 96 TYR B 88 ARG B 96 SITE 1 AC6 4 CYS B 142 PRO B 143 ASP B 144 ARG B 145 SITE 1 AC7 4 ASP A 92 ALA A 93 ARG B 76 ARG B 80 CRYST1 49.709 49.709 129.710 90.00 90.00 90.00 P 43 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020117 0.000000 0.000000 0.00000 SCALE2 0.000000 0.020117 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007710 0.00000