HEADER TRANSCRIPTION REGULATOR 30-MAR-09 3GV0 TITLE CRYSTAL STRUCTURE OF LACI FAMILY TRANSCRIPTION REGULATOR FROM TITLE 2 AGROBACTERIUM TUMEFACIENS COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTIONAL REGULATOR, LACI FAMILY; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 62-338; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AGROBACTERIUM TUMEFACIENS STR.; SOURCE 3 ORGANISM_TAXID: 176299; SOURCE 4 STRAIN: C58; SOURCE 5 ATCC: 33970; SOURCE 6 GENE: AGR_C_2807, ATU1522; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PSGX3(BC) KEYWDS TRANSCRIPTION REGULATOR, PSI-II, 11224E, STRUCTURAL GENOMICS, PROTEIN KEYWDS 2 STRUCTURE INITIATIVE, NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL KEYWDS 3 GENOMICS, NYSGXRC, NEW YORK STRUCTURAL GENOMIX RESEARCH CONSORTIUM, KEYWDS 4 DNA-BINDING, TRANSCRIPTION, TRANSCRIPTION REGULATION EXPDTA X-RAY DIFFRACTION AUTHOR A.BAGARIA,S.K.BURLEY,S.SWAMINATHAN,NEW YORK SGX RESEARCH CENTER FOR AUTHOR 2 STRUCTURAL GENOMICS (NYSGXRC) REVDAT 3 10-FEB-21 3GV0 1 AUTHOR JRNL SEQADV LINK REVDAT 2 13-JUL-11 3GV0 1 VERSN REVDAT 1 14-APR-09 3GV0 0 JRNL AUTH A.BAGARIA,S.K.BURLEY,S.SWAMINATHAN JRNL TITL CRYSTAL STRUCTURE OF LACI FAMILY TRANSCRIPTION REGULATOR JRNL TITL 2 FROM AGROBACTERIUM TUMEFACIENS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.36 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 19542 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.255 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1056 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.35 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.41 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1384 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.20 REMARK 3 BIN R VALUE (WORKING SET) : 0.2450 REMARK 3 BIN FREE R VALUE SET COUNT : 72 REMARK 3 BIN FREE R VALUE : 0.3720 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2097 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 88 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 52.69 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.213 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.204 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.145 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.991 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.916 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2139 ; 0.025 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2895 ; 1.992 ; 1.948 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 268 ; 7.970 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 98 ;33.153 ;23.571 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 367 ;16.439 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;19.273 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 329 ; 0.154 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1613 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 971 ; 0.230 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1450 ; 0.314 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 104 ; 0.201 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 41 ; 0.268 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 4 ; 0.157 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1383 ; 1.506 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2167 ; 2.385 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 849 ; 3.719 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 728 ; 5.301 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. RESIDUES LISTED AS MISSING IN REMARK 465 ARE DUE TO REMARK 3 LACK OF ELECTRON DENSITY. RESIDUES WITH MISSING ATOMS LISTED IN REMARK 3 REMARK 470 ARE DUE TO LACK OF ELECTRON DENSITY FOR SIDE CHAINS REMARK 3 AND MODELED AS ALANINES. REMARK 4 REMARK 4 3GV0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-APR-09. REMARK 100 THE DEPOSITION ID IS D_1000052340. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-MAR-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : SI(111) CHANNEL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20658 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 43.360 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 18.90 REMARK 200 R MERGE (I) : 0.12400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.43 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.6 REMARK 200 DATA REDUNDANCY IN SHELL : 9.80 REMARK 200 R MERGE FOR SHELL (I) : 0.42300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXD, SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.72 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES PH 7.5, 20% PEG 10000, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 74.14933 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 37.07467 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 37.07467 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 74.14933 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2630 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.9 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 441 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 59 REMARK 465 SER A 60 REMARK 465 LEU A 61 REMARK 465 ARG A 62 REMARK 465 THR A 63 REMARK 465 GLY A 64 REMARK 465 SER A 334 REMARK 465 MSE A 335 REMARK 465 ALA A 336 REMARK 465 PRO A 337 REMARK 465 LYS A 338 REMARK 465 GLU A 339 REMARK 465 GLY A 340 REMARK 465 HIS A 341 REMARK 465 HIS A 342 REMARK 465 HIS A 343 REMARK 465 HIS A 344 REMARK 465 HIS A 345 REMARK 465 HIS A 346 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 266 NZ LYS A 291 0.84 REMARK 500 CB LEU A 73 O HOH A 483 1.62 REMARK 500 O LEU A 94 OG1 THR A 97 1.95 REMARK 500 CD1 ILE A 259 CZ PHE A 286 1.96 REMARK 500 NE2 GLN A 238 O ALA A 267 2.00 REMARK 500 CE MSE A 80 CE2 PHE A 286 2.05 REMARK 500 CD GLU A 266 NZ LYS A 291 2.06 REMARK 500 O VAL A 72 O HOH A 471 2.07 REMARK 500 OE1 GLU A 319 O HOH A 414 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MSE A 158 11.59 -146.40 REMARK 500 GLU A 285 6.94 -68.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGXRC-11224E RELATED DB: TARGETDB DBREF 3GV0 A 62 338 UNP Q7CZ24 Q7CZ24_AGRT5 62 338 SEQADV 3GV0 MSE A 59 UNP Q7CZ24 EXPRESSION TAG SEQADV 3GV0 SER A 60 UNP Q7CZ24 EXPRESSION TAG SEQADV 3GV0 LEU A 61 UNP Q7CZ24 EXPRESSION TAG SEQADV 3GV0 GLU A 339 UNP Q7CZ24 EXPRESSION TAG SEQADV 3GV0 GLY A 340 UNP Q7CZ24 EXPRESSION TAG SEQADV 3GV0 HIS A 341 UNP Q7CZ24 EXPRESSION TAG SEQADV 3GV0 HIS A 342 UNP Q7CZ24 EXPRESSION TAG SEQADV 3GV0 HIS A 343 UNP Q7CZ24 EXPRESSION TAG SEQADV 3GV0 HIS A 344 UNP Q7CZ24 EXPRESSION TAG SEQADV 3GV0 HIS A 345 UNP Q7CZ24 EXPRESSION TAG SEQADV 3GV0 HIS A 346 UNP Q7CZ24 EXPRESSION TAG SEQRES 1 A 288 MSE SER LEU ARG THR GLY LYS THR ASN VAL ILE ALA LEU SEQRES 2 A 288 VAL LEU SER VAL ASP GLU GLU LEU MSE GLY PHE THR SER SEQRES 3 A 288 GLN MSE VAL PHE GLY ILE THR GLU VAL LEU SER THR THR SEQRES 4 A 288 GLN TYR HIS LEU VAL VAL THR PRO HIS ILE HIS ALA LYS SEQRES 5 A 288 ASP SER MSE VAL PRO ILE ARG TYR ILE LEU GLU THR GLY SEQRES 6 A 288 SER ALA ASP GLY VAL ILE ILE SER LYS ILE GLU PRO ASN SEQRES 7 A 288 ASP PRO ARG VAL ARG PHE MSE THR GLU ARG ASN MSE PRO SEQRES 8 A 288 PHE VAL THR HIS GLY ARG SER ASP MSE GLY ILE GLU HIS SEQRES 9 A 288 ALA PHE HIS ASP PHE ASP ASN GLU ALA TYR ALA TYR GLU SEQRES 10 A 288 ALA VAL GLU ARG LEU ALA GLN CYS GLY ARG LYS ARG ILE SEQRES 11 A 288 ALA VAL ILE VAL PRO PRO SER ARG PHE SER PHE HIS ASP SEQRES 12 A 288 HIS ALA ARG LYS GLY PHE ASN ARG GLY ILE ARG ASP PHE SEQRES 13 A 288 GLY LEU THR GLU PHE PRO ILE ASP ALA VAL THR ILE GLU SEQRES 14 A 288 THR PRO LEU GLU LYS ILE ARG ASP PHE GLY GLN ARG LEU SEQRES 15 A 288 MSE GLN SER SER ASP ARG PRO ASP GLY ILE VAL SER ILE SEQRES 16 A 288 SER GLY SER SER THR ILE ALA LEU VAL ALA GLY PHE GLU SEQRES 17 A 288 ALA ALA GLY VAL LYS ILE GLY GLU ASP VAL ASP ILE VAL SEQRES 18 A 288 SER LYS GLN SER ALA GLU PHE LEU ASN TRP ILE LYS PRO SEQRES 19 A 288 GLN ILE HIS THR VAL ASN GLU ASP ILE LYS LEU ALA GLY SEQRES 20 A 288 ARG GLU LEU ALA LYS ALA LEU LEU ALA ARG ILE ASN GLY SEQRES 21 A 288 GLU ALA ALA GLU THR LEU GLN SER ILE SER GLY PRO VAL SEQRES 22 A 288 TRP SER SER MSE ALA PRO LYS GLU GLY HIS HIS HIS HIS SEQRES 23 A 288 HIS HIS MODRES 3GV0 MSE A 80 MET SELENOMETHIONINE MODRES 3GV0 MSE A 86 MET SELENOMETHIONINE MODRES 3GV0 MSE A 113 MET SELENOMETHIONINE MODRES 3GV0 MSE A 143 MET SELENOMETHIONINE MODRES 3GV0 MSE A 148 MET SELENOMETHIONINE MODRES 3GV0 MSE A 158 MET SELENOMETHIONINE MODRES 3GV0 MSE A 241 MET SELENOMETHIONINE HET MSE A 80 8 HET MSE A 86 8 HET MSE A 113 8 HET MSE A 143 8 HET MSE A 148 8 HET MSE A 158 8 HET MSE A 241 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 7(C5 H11 N O2 SE) FORMUL 2 HOH *88(H2 O) HELIX 1 1 GLY A 81 SER A 95 1 15 HELIX 2 2 HIS A 108 SER A 112 5 5 HELIX 3 3 MSE A 113 GLY A 123 1 11 HELIX 4 4 ASP A 137 ARG A 146 1 10 HELIX 5 5 ASP A 168 CYS A 183 1 16 HELIX 6 6 PHE A 197 PHE A 214 1 18 HELIX 7 7 PRO A 229 MSE A 241 1 13 HELIX 8 8 SER A 254 ALA A 267 1 14 HELIX 9 9 PHE A 286 LYS A 291 1 6 HELIX 10 10 ASP A 300 ASN A 317 1 18 HELIX 11 11 ALA A 320 THR A 323 5 4 SHEET 1 A 6 HIS A 100 VAL A 103 0 SHEET 2 A 6 VAL A 68 VAL A 72 1 N LEU A 71 O VAL A 102 SHEET 3 A 6 GLY A 127 SER A 131 1 O ILE A 129 N ALA A 70 SHEET 4 A 6 PHE A 150 HIS A 153 1 O HIS A 153 N ILE A 130 SHEET 5 A 6 ALA A 163 PHE A 167 1 O HIS A 165 N THR A 152 SHEET 6 A 6 GLN A 325 SER A 328 1 O SER A 328 N ASP A 166 SHEET 1 B 6 THR A 217 GLU A 218 0 SHEET 2 B 6 ARG A 187 ILE A 191 1 N ILE A 188 O THR A 217 SHEET 3 B 6 GLY A 249 SER A 252 1 O VAL A 251 N ALA A 189 SHEET 4 B 6 ASP A 277 GLN A 282 1 O VAL A 279 N ILE A 250 SHEET 5 B 6 HIS A 295 ASN A 298 1 O HIS A 295 N ILE A 278 SHEET 6 B 6 VAL A 331 TRP A 332 -1 O VAL A 331 N ASN A 298 LINK C LEU A 79 N MSE A 80 1555 1555 1.31 LINK C MSE A 80 N GLY A 81 1555 1555 1.31 LINK C GLN A 85 N MSE A 86 1555 1555 1.30 LINK C MSE A 86 N VAL A 87 1555 1555 1.31 LINK C SER A 112 N MSE A 113 1555 1555 1.32 LINK C MSE A 113 N VAL A 114 1555 1555 1.31 LINK C PHE A 142 N MSE A 143 1555 1555 1.32 LINK C MSE A 143 N THR A 144 1555 1555 1.31 LINK C ASN A 147 N MSE A 148 1555 1555 1.32 LINK C MSE A 148 N PRO A 149 1555 1555 1.31 LINK C ASP A 157 N MSE A 158 1555 1555 1.32 LINK C MSE A 158 N GLY A 159 1555 1555 1.31 LINK C LEU A 240 N MSE A 241 1555 1555 1.31 LINK C MSE A 241 N GLN A 242 1555 1555 1.32 CRYST1 86.710 86.710 111.224 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011533 0.006658 0.000000 0.00000 SCALE2 0.000000 0.013317 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008991 0.00000