HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 30-MAR-09 3GVE TITLE CRYSTAL STRUCTURE OF CALCINEURIN-LIKE PHOSPHOESTERASE YFKN FROM TITLE 2 BACILLUS SUBTILIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: YFKN PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 37-374; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS SUBSP. SUBTILIS; SOURCE 3 ORGANISM_TAXID: 224308; SOURCE 4 STRAIN: 168; SOURCE 5 GENE: BSU07840, YFKN; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)MAGIC; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS ALPHA-BETA-BETA-ALPHA SANDWICH, STRUCTURAL GENOMICS, PSI-2, PROTEIN KEYWDS 2 STRUCTURE INITIATIVE, MIDWEST CENTER FOR STRUCTURAL GENOMICS, MCSG, KEYWDS 3 METAL-BINDING, NUCLEOTIDE-BINDING, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR Y.KIM,N.MARSHALL,G.COBB,A.JOACHIMIAK,MIDWEST CENTER FOR STRUCTURAL AUTHOR 2 GENOMICS (MCSG) REVDAT 4 30-OCT-24 3GVE 1 REMARK SEQADV LINK REVDAT 3 01-NOV-17 3GVE 1 REMARK REVDAT 2 13-JUL-11 3GVE 1 VERSN REVDAT 1 28-APR-09 3GVE 0 JRNL AUTH Y.KIM,N.MARSHALL,G.COBB,A.JOACHIMIAK JRNL TITL CRYSTAL STRUCTURE OF CALCINEURIN-LIKE PHOSPHOESTERASE FROM JRNL TITL 2 BACILLUS SUBTILIS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : MLHL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.54 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 169020 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.154 REMARK 3 R VALUE (WORKING SET) : 0.154 REMARK 3 FREE R VALUE : 0.163 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 8483 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 31.5460 - 3.8739 0.97 5339 296 0.1501 0.1530 REMARK 3 2 3.8739 - 3.0757 1.00 5437 279 0.1455 0.1378 REMARK 3 3 3.0757 - 2.6871 1.00 5431 264 0.1666 0.1757 REMARK 3 4 2.6871 - 2.4415 1.00 5406 294 0.1615 0.1659 REMARK 3 5 2.4415 - 2.2666 1.00 5394 287 0.1517 0.1490 REMARK 3 6 2.2666 - 2.1330 1.00 5392 303 0.1385 0.1421 REMARK 3 7 2.1330 - 2.0262 1.00 5384 281 0.1368 0.1476 REMARK 3 8 2.0262 - 1.9380 1.00 5346 308 0.1403 0.1583 REMARK 3 9 1.9380 - 1.8634 1.00 5351 289 0.1413 0.1522 REMARK 3 10 1.8634 - 1.7991 1.00 5439 288 0.1432 0.1589 REMARK 3 11 1.7991 - 1.7429 1.00 5356 297 0.1423 0.1472 REMARK 3 12 1.7429 - 1.6930 1.00 5382 312 0.1368 0.1578 REMARK 3 13 1.6930 - 1.6485 1.00 5341 293 0.1317 0.1562 REMARK 3 14 1.6485 - 1.6083 1.00 5370 289 0.1267 0.1451 REMARK 3 15 1.6083 - 1.5717 1.00 5372 276 0.1263 0.1530 REMARK 3 16 1.5717 - 1.5382 1.00 5393 281 0.1264 0.1434 REMARK 3 17 1.5382 - 1.5075 1.00 5400 285 0.1243 0.1598 REMARK 3 18 1.5075 - 1.4790 1.00 5355 285 0.1302 0.1580 REMARK 3 19 1.4790 - 1.4526 1.00 5395 267 0.1368 0.1585 REMARK 3 20 1.4526 - 1.4280 1.00 5346 318 0.1434 0.1669 REMARK 3 21 1.4280 - 1.4050 1.00 5361 266 0.1430 0.1704 REMARK 3 22 1.4050 - 1.3833 1.00 5432 278 0.1475 0.1784 REMARK 3 23 1.3833 - 1.3630 1.00 5324 271 0.1517 0.1703 REMARK 3 24 1.3630 - 1.3438 1.00 5408 277 0.1545 0.1828 REMARK 3 25 1.3438 - 1.3256 1.00 5411 263 0.1711 0.1929 REMARK 3 26 1.3256 - 1.3084 1.00 5398 269 0.1781 0.2246 REMARK 3 27 1.3084 - 1.2921 1.00 5294 280 0.1865 0.2288 REMARK 3 28 1.2921 - 1.2765 1.00 5421 292 0.1930 0.2008 REMARK 3 29 1.2765 - 1.2617 0.99 5308 270 0.2096 0.2263 REMARK 3 30 1.2617 - 1.2500 0.84 4551 225 0.2312 0.2667 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.38 REMARK 3 B_SOL : 43.82 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.120 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 11.53 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.24140 REMARK 3 B22 (A**2) : -0.90200 REMARK 3 B33 (A**2) : -0.33940 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.21400 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.018 NULL REMARK 3 ANGLE : 1.508 NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3GVE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-APR-09. REMARK 100 THE DEPOSITION ID IS D_1000052354. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-FEB-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97937 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 169020 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.250 REMARK 200 RESOLUTION RANGE LOW (A) : 31.536 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 9.100 REMARK 200 R MERGE (I) : 0.11600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.27 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : 7.70 REMARK 200 R MERGE FOR SHELL (I) : 0.68600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000, SHELXCD, SHELXD, MLPHARE, SOLVE, DM, REMARK 200 RESOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH 7.5, 1.4 M SODIUM REMARK 280 CITRATE TRIBASIC DIHYDRATE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 46.25250 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 GLU A 1 REMARK 465 SER A 2 REMARK 465 ALA A 3 REMARK 465 ALA A 4 REMARK 465 SER B -2 REMARK 465 ASN B -1 REMARK 465 ALA B 0 REMARK 465 GLU B 1 REMARK 465 SER B 2 REMARK 465 ALA B 3 REMARK 465 ALA B 4 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CB PRO A 5 O HOH A 765 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS B 97 CG LYS B 97 CD -0.344 REMARK 500 SER B 135 CB SER B 135 OG -0.129 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 214 148.33 -174.68 REMARK 500 HIS A 246 -49.48 72.68 REMARK 500 GLN A 261 -16.76 89.88 REMARK 500 SER A 278 -137.33 59.91 REMARK 500 THR B 214 148.01 -174.80 REMARK 500 HIS B 246 -49.38 73.93 REMARK 500 GLN B 261 -14.80 87.90 REMARK 500 SER B 278 -136.68 61.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 402 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 16 OD1 REMARK 620 2 ASP A 61 OD2 85.5 REMARK 620 3 HOH A 398 O 167.8 91.0 REMARK 620 4 HOH A 424 O 91.2 82.0 76.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 403 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 61 OD2 REMARK 620 2 ASN A 105 OD1 105.1 REMARK 620 3 HIS A 213 NE2 91.9 97.4 REMARK 620 4 HIS A 246 ND1 160.3 91.0 97.2 REMARK 620 5 HOH A 424 O 74.4 141.4 121.2 86.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 401 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 16 OD1 REMARK 620 2 ASP B 61 OD2 86.7 REMARK 620 3 HOH B 396 O 166.8 93.5 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 404 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 61 OD2 REMARK 620 2 ASN B 105 OD1 103.2 REMARK 620 3 HIS B 213 NE2 93.0 97.5 REMARK 620 4 HIS B 246 ND1 164.0 86.9 98.0 REMARK 620 5 HOH B 734 O 84.8 133.2 128.4 79.3 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CIT A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CIT B 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC62077.1 RELATED DB: TARGETDB DBREF 3GVE A 1 338 UNP O34313 O34313_BACSU 37 374 DBREF 3GVE B 1 338 UNP O34313 O34313_BACSU 37 374 SEQADV 3GVE SER A -2 UNP O34313 EXPRESSION TAG SEQADV 3GVE ASN A -1 UNP O34313 EXPRESSION TAG SEQADV 3GVE ALA A 0 UNP O34313 EXPRESSION TAG SEQADV 3GVE SER B -2 UNP O34313 EXPRESSION TAG SEQADV 3GVE ASN B -1 UNP O34313 EXPRESSION TAG SEQADV 3GVE ALA B 0 UNP O34313 EXPRESSION TAG SEQRES 1 A 341 SER ASN ALA GLU SER ALA ALA PRO GLN VAL HIS LEU SER SEQRES 2 A 341 ILE LEU ALA THR THR ASP ILE HIS ALA ASN MSE MSE ASP SEQRES 3 A 341 TYR ASP TYR TYR SER ASP LYS GLU THR ALA ASP PHE GLY SEQRES 4 A 341 LEU ALA ARG THR ALA GLN LEU ILE GLN LYS HIS ARG GLU SEQRES 5 A 341 GLN ASN PRO ASN THR LEU LEU VAL ASP ASN GLY ASP LEU SEQRES 6 A 341 ILE GLN GLY ASN PRO LEU GLY GLU TYR ALA VAL LYS TYR SEQRES 7 A 341 GLN LYS ASP ASP ILE ILE SER GLY THR LYS THR HIS PRO SEQRES 8 A 341 ILE ILE SER VAL MSE ASN ALA LEU LYS TYR ASP ALA GLY SEQRES 9 A 341 THR LEU GLY ASN HIS GLU PHE ASN TYR GLY LEU ASP PHE SEQRES 10 A 341 LEU ASP GLY THR ILE LYS GLY ALA ASP PHE PRO ILE VAL SEQRES 11 A 341 ASN ALA ASN VAL LYS THR THR SER GLY GLU ASN ARG TYR SEQRES 12 A 341 THR PRO TYR VAL ILE ASN GLU LYS THR LEU ILE ASP GLU SEQRES 13 A 341 ASN GLY ASN GLU GLN LYS VAL LYS VAL GLY TYR ILE GLY SEQRES 14 A 341 PHE VAL PRO PRO GLN ILE MSE THR TRP ASP LYS LYS ASN SEQRES 15 A 341 LEU GLU GLY GLN VAL GLN VAL GLN ASP ILE VAL GLU SER SEQRES 16 A 341 ALA ASN GLU THR ILE PRO LYS MSE LYS ALA GLU GLY ALA SEQRES 17 A 341 ASP VAL ILE ILE ALA LEU ALA HIS THR GLY ILE GLU LYS SEQRES 18 A 341 GLN ALA GLN SER SER GLY ALA GLU ASN ALA VAL PHE ASP SEQRES 19 A 341 LEU ALA THR LYS THR LYS GLY ILE ASP ALA ILE ILE SER SEQRES 20 A 341 GLY HIS GLN HIS GLY LEU PHE PRO SER ALA GLU TYR ALA SEQRES 21 A 341 GLY VAL ALA GLN PHE ASN VAL GLU LYS GLY THR ILE ASN SEQRES 22 A 341 GLY ILE PRO VAL VAL MSE PRO SER SER TRP GLY LYS TYR SEQRES 23 A 341 LEU GLY VAL ILE ASP LEU LYS LEU GLU LYS ALA ASP GLY SEQRES 24 A 341 SER TRP LYS VAL ALA ASP SER LYS GLY SER ILE GLU SER SEQRES 25 A 341 ILE ALA GLY ASN VAL THR SER ARG ASN GLU THR VAL THR SEQRES 26 A 341 ASN THR ILE GLN GLN THR HIS GLN ASN THR LEU GLU TYR SEQRES 27 A 341 VAL ARG LYS SEQRES 1 B 341 SER ASN ALA GLU SER ALA ALA PRO GLN VAL HIS LEU SER SEQRES 2 B 341 ILE LEU ALA THR THR ASP ILE HIS ALA ASN MSE MSE ASP SEQRES 3 B 341 TYR ASP TYR TYR SER ASP LYS GLU THR ALA ASP PHE GLY SEQRES 4 B 341 LEU ALA ARG THR ALA GLN LEU ILE GLN LYS HIS ARG GLU SEQRES 5 B 341 GLN ASN PRO ASN THR LEU LEU VAL ASP ASN GLY ASP LEU SEQRES 6 B 341 ILE GLN GLY ASN PRO LEU GLY GLU TYR ALA VAL LYS TYR SEQRES 7 B 341 GLN LYS ASP ASP ILE ILE SER GLY THR LYS THR HIS PRO SEQRES 8 B 341 ILE ILE SER VAL MSE ASN ALA LEU LYS TYR ASP ALA GLY SEQRES 9 B 341 THR LEU GLY ASN HIS GLU PHE ASN TYR GLY LEU ASP PHE SEQRES 10 B 341 LEU ASP GLY THR ILE LYS GLY ALA ASP PHE PRO ILE VAL SEQRES 11 B 341 ASN ALA ASN VAL LYS THR THR SER GLY GLU ASN ARG TYR SEQRES 12 B 341 THR PRO TYR VAL ILE ASN GLU LYS THR LEU ILE ASP GLU SEQRES 13 B 341 ASN GLY ASN GLU GLN LYS VAL LYS VAL GLY TYR ILE GLY SEQRES 14 B 341 PHE VAL PRO PRO GLN ILE MSE THR TRP ASP LYS LYS ASN SEQRES 15 B 341 LEU GLU GLY GLN VAL GLN VAL GLN ASP ILE VAL GLU SER SEQRES 16 B 341 ALA ASN GLU THR ILE PRO LYS MSE LYS ALA GLU GLY ALA SEQRES 17 B 341 ASP VAL ILE ILE ALA LEU ALA HIS THR GLY ILE GLU LYS SEQRES 18 B 341 GLN ALA GLN SER SER GLY ALA GLU ASN ALA VAL PHE ASP SEQRES 19 B 341 LEU ALA THR LYS THR LYS GLY ILE ASP ALA ILE ILE SER SEQRES 20 B 341 GLY HIS GLN HIS GLY LEU PHE PRO SER ALA GLU TYR ALA SEQRES 21 B 341 GLY VAL ALA GLN PHE ASN VAL GLU LYS GLY THR ILE ASN SEQRES 22 B 341 GLY ILE PRO VAL VAL MSE PRO SER SER TRP GLY LYS TYR SEQRES 23 B 341 LEU GLY VAL ILE ASP LEU LYS LEU GLU LYS ALA ASP GLY SEQRES 24 B 341 SER TRP LYS VAL ALA ASP SER LYS GLY SER ILE GLU SER SEQRES 25 B 341 ILE ALA GLY ASN VAL THR SER ARG ASN GLU THR VAL THR SEQRES 26 B 341 ASN THR ILE GLN GLN THR HIS GLN ASN THR LEU GLU TYR SEQRES 27 B 341 VAL ARG LYS MODRES 3GVE MSE A 21 MET SELENOMETHIONINE MODRES 3GVE MSE A 22 MET SELENOMETHIONINE MODRES 3GVE MSE A 93 MET SELENOMETHIONINE MODRES 3GVE MSE A 173 MET SELENOMETHIONINE MODRES 3GVE MSE A 200 MET SELENOMETHIONINE MODRES 3GVE MSE A 276 MET SELENOMETHIONINE MODRES 3GVE MSE B 21 MET SELENOMETHIONINE MODRES 3GVE MSE B 22 MET SELENOMETHIONINE MODRES 3GVE MSE B 93 MET SELENOMETHIONINE MODRES 3GVE MSE B 173 MET SELENOMETHIONINE MODRES 3GVE MSE B 200 MET SELENOMETHIONINE MODRES 3GVE MSE B 276 MET SELENOMETHIONINE HET MSE A 21 8 HET MSE A 22 8 HET MSE A 93 8 HET MSE A 173 8 HET MSE A 200 8 HET MSE A 276 8 HET MSE B 21 8 HET MSE B 22 8 HET MSE B 93 8 HET MSE B 173 8 HET MSE B 200 8 HET MSE B 276 8 HET MN A 402 1 HET MG A 403 1 HET CIT A 502 13 HET MN B 401 1 HET MG B 404 1 HET MG B 405 1 HET CIT B 501 13 HETNAM MSE SELENOMETHIONINE HETNAM MN MANGANESE (II) ION HETNAM MG MAGNESIUM ION HETNAM CIT CITRIC ACID FORMUL 1 MSE 12(C5 H11 N O2 SE) FORMUL 3 MN 2(MN 2+) FORMUL 4 MG 3(MG 2+) FORMUL 5 CIT 2(C6 H8 O7) FORMUL 10 HOH *813(H2 O) HELIX 1 1 GLY A 36 ASN A 51 1 16 HELIX 2 2 ASN A 66 SER A 82 1 17 HELIX 3 3 HIS A 87 LEU A 96 1 10 HELIX 4 4 GLY A 104 ASN A 109 5 6 HELIX 5 5 GLY A 111 GLY A 121 1 11 HELIX 6 6 GLN A 171 ASP A 176 1 6 HELIX 7 7 ASP A 176 GLU A 181 1 6 HELIX 8 8 ASP A 188 GLU A 203 1 16 HELIX 9 9 ALA A 228 THR A 236 1 9 HELIX 10 10 SER A 253 ALA A 257 5 5 HELIX 11 11 ASN A 318 LYS A 338 1 21 HELIX 12 12 GLY B 36 ASN B 51 1 16 HELIX 13 13 ASN B 66 SER B 82 1 17 HELIX 14 14 HIS B 87 LEU B 96 1 10 HELIX 15 15 GLY B 104 ASN B 109 5 6 HELIX 16 16 GLY B 111 GLY B 121 1 11 HELIX 17 17 GLN B 171 ASP B 176 1 6 HELIX 18 18 ASP B 176 GLU B 181 1 6 HELIX 19 19 ASP B 188 GLU B 203 1 16 HELIX 20 20 ALA B 228 THR B 236 1 9 HELIX 21 21 SER B 253 ALA B 257 5 5 HELIX 22 22 ASN B 318 LYS B 338 1 21 SHEET 1 A 4 THR A 54 ASP A 58 0 SHEET 2 A 4 GLN A 6 THR A 14 1 N LEU A 12 O LEU A 55 SHEET 3 A 4 TYR A 283 ALA A 294 -1 O LEU A 289 N LEU A 9 SHEET 4 A 4 SER A 297 SER A 309 -1 O ASP A 302 N LYS A 290 SHEET 1 B 2 TYR A 24 ASP A 25 0 SHEET 2 B 2 LYS A 30 GLU A 31 -1 O LYS A 30 N ASP A 25 SHEET 1 C 2 GLY A 101 THR A 102 0 SHEET 2 C 2 ILE A 126 VAL A 127 1 O VAL A 127 N GLY A 101 SHEET 1 D 2 VAL A 131 LYS A 132 0 SHEET 2 D 2 GLN A 185 VAL A 186 -1 O GLN A 185 N LYS A 132 SHEET 1 E 6 TYR A 143 ILE A 151 0 SHEET 2 E 6 GLU A 157 PHE A 167 -1 O VAL A 160 N LYS A 148 SHEET 3 E 6 VAL A 207 ALA A 212 1 O LEU A 211 N ILE A 165 SHEET 4 E 6 ALA A 241 SER A 244 1 O ILE A 243 N ALA A 210 SHEET 5 E 6 ILE A 272 PRO A 277 1 O VAL A 275 N SER A 244 SHEET 6 E 6 LEU A 250 PHE A 251 -1 N PHE A 251 O MSE A 276 SHEET 1 F 7 TYR A 143 ILE A 151 0 SHEET 2 F 7 GLU A 157 PHE A 167 -1 O VAL A 160 N LYS A 148 SHEET 3 F 7 VAL A 207 ALA A 212 1 O LEU A 211 N ILE A 165 SHEET 4 F 7 ALA A 241 SER A 244 1 O ILE A 243 N ALA A 210 SHEET 5 F 7 ILE A 272 PRO A 277 1 O VAL A 275 N SER A 244 SHEET 6 F 7 THR A 268 ILE A 269 -1 N ILE A 269 O ILE A 272 SHEET 7 F 7 PHE A 262 ASN A 263 -1 N ASN A 263 O THR A 268 SHEET 1 G 4 THR B 54 ASP B 58 0 SHEET 2 G 4 GLN B 6 THR B 14 1 N LEU B 12 O LEU B 55 SHEET 3 G 4 TYR B 283 ALA B 294 -1 O LEU B 291 N VAL B 7 SHEET 4 G 4 SER B 297 SER B 309 -1 O SER B 297 N ALA B 294 SHEET 1 H 2 TYR B 24 ASP B 25 0 SHEET 2 H 2 LYS B 30 GLU B 31 -1 O LYS B 30 N ASP B 25 SHEET 1 I 2 GLY B 101 THR B 102 0 SHEET 2 I 2 ILE B 126 VAL B 127 1 O VAL B 127 N GLY B 101 SHEET 1 J 2 VAL B 131 LYS B 132 0 SHEET 2 J 2 GLN B 185 VAL B 186 -1 O GLN B 185 N LYS B 132 SHEET 1 K 6 TYR B 143 ILE B 151 0 SHEET 2 K 6 GLU B 157 PHE B 167 -1 O VAL B 160 N LYS B 148 SHEET 3 K 6 VAL B 207 ALA B 212 1 O VAL B 207 N GLY B 163 SHEET 4 K 6 ALA B 241 SER B 244 1 O ILE B 243 N ALA B 210 SHEET 5 K 6 ILE B 272 PRO B 277 1 O VAL B 275 N SER B 244 SHEET 6 K 6 LEU B 250 PHE B 251 -1 N PHE B 251 O MSE B 276 SHEET 1 L 7 TYR B 143 ILE B 151 0 SHEET 2 L 7 GLU B 157 PHE B 167 -1 O VAL B 160 N LYS B 148 SHEET 3 L 7 VAL B 207 ALA B 212 1 O VAL B 207 N GLY B 163 SHEET 4 L 7 ALA B 241 SER B 244 1 O ILE B 243 N ALA B 210 SHEET 5 L 7 ILE B 272 PRO B 277 1 O VAL B 275 N SER B 244 SHEET 6 L 7 THR B 268 ILE B 269 -1 N ILE B 269 O ILE B 272 SHEET 7 L 7 PHE B 262 ASN B 263 -1 N ASN B 263 O THR B 268 LINK C ASN A 20 N MSE A 21 1555 1555 1.33 LINK C MSE A 21 N MSE A 22 1555 1555 1.32 LINK C MSE A 22 N ASP A 23 1555 1555 1.33 LINK C VAL A 92 N MSE A 93 1555 1555 1.33 LINK C MSE A 93 N ASN A 94 1555 1555 1.33 LINK C ILE A 172 N MSE A 173 1555 1555 1.33 LINK C MSE A 173 N THR A 174 1555 1555 1.32 LINK C LYS A 199 N MSE A 200 1555 1555 1.33 LINK C MSE A 200 N LYS A 201 1555 1555 1.34 LINK C VAL A 275 N MSE A 276 1555 1555 1.33 LINK C MSE A 276 N PRO A 277 1555 1555 1.32 LINK C ASN B 20 N MSE B 21 1555 1555 1.32 LINK C MSE B 21 N MSE B 22 1555 1555 1.30 LINK C MSE B 22 N ASP B 23 1555 1555 1.33 LINK C VAL B 92 N MSE B 93 1555 1555 1.33 LINK C MSE B 93 N ASN B 94 1555 1555 1.32 LINK C ILE B 172 N MSE B 173 1555 1555 1.33 LINK C MSE B 173 N THR B 174 1555 1555 1.32 LINK C LYS B 199 N MSE B 200 1555 1555 1.32 LINK C MSE B 200 N LYS B 201 1555 1555 1.31 LINK C VAL B 275 N MSE B 276 1555 1555 1.32 LINK C MSE B 276 N PRO B 277 1555 1555 1.33 LINK OD1 ASP A 16 MN MN A 402 1555 1555 2.15 LINK OD2 ASP A 61 MN MN A 402 1555 1555 2.28 LINK OD2 ASP A 61 MG MG A 403 1555 1555 2.42 LINK OD1 ASN A 105 MG MG A 403 1555 1555 2.07 LINK NE2 HIS A 213 MG MG A 403 1555 1555 2.32 LINK ND1 HIS A 246 MG MG A 403 1555 1555 2.42 LINK O HOH A 398 MN MN A 402 1555 1555 2.25 LINK MN MN A 402 O HOH A 424 1555 1555 2.20 LINK MG MG A 403 O HOH A 424 1555 1555 2.44 LINK OD1 ASP B 16 MN MN B 401 1555 1555 2.21 LINK OD2 ASP B 61 MN MN B 401 1555 1555 2.22 LINK OD2 ASP B 61 MG MG B 404 1555 1555 2.40 LINK OD1 ASN B 105 MG MG B 404 1555 1555 2.23 LINK NE2 HIS B 213 MG MG B 404 1555 1555 2.31 LINK ND1 HIS B 246 MG MG B 404 1555 1555 2.44 LINK O HOH B 396 MN MN B 401 1555 1555 2.18 LINK MG MG B 404 O HOH B 734 1555 1555 2.32 CISPEP 1 PHE A 251 PRO A 252 0 0.84 CISPEP 2 PHE B 251 PRO B 252 0 2.48 SITE 1 AC1 7 ASP A 16 HIS A 18 ASP A 61 HIS A 248 SITE 2 AC1 7 HOH A 398 MG A 403 HOH A 424 SITE 1 AC2 7 ASP A 61 ASN A 105 HIS A 213 HIS A 246 SITE 2 AC2 7 MN A 402 HOH A 424 CIT A 502 SITE 1 AC3 12 ASN A 105 HIS A 106 TRP A 175 HIS A 246 SITE 2 AC3 12 HOH A 340 HOH A 398 MG A 403 HOH A 410 SITE 3 AC3 12 HOH A 424 HOH A 577 HOH A 589 HOH A 622 SITE 1 AC4 7 ASP B 16 HIS B 18 ASP B 61 HIS B 248 SITE 2 AC4 7 HOH B 396 MG B 404 HOH B 734 SITE 1 AC5 7 ASP B 61 ASN B 105 HIS B 213 HIS B 246 SITE 2 AC5 7 MN B 401 CIT B 501 HOH B 734 SITE 1 AC6 5 ASN B 105 HIS B 106 ASN B 109 HOH B 384 SITE 2 AC6 5 CIT B 501 SITE 1 AC7 11 ASN B 105 HIS B 106 TRP B 175 HIS B 246 SITE 2 AC7 11 HOH B 395 HOH B 396 MG B 404 MG B 405 SITE 3 AC7 11 HOH B 494 HOH B 633 HOH B 734 CRYST1 67.091 92.505 50.316 90.00 89.94 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014905 0.000000 -0.000016 0.00000 SCALE2 0.000000 0.010810 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019874 0.00000