data_3GX3 # _entry.id 3GX3 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.378 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3GX3 pdb_00003gx3 10.2210/pdb3gx3/pdb NDB UR0197 ? ? RCSB RCSB052414 ? ? WWPDB D_1000052414 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3GX2 . unspecified PDB 3GX5 . unspecified PDB 3GX6 . unspecified PDB 3GX7 . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3GX3 _pdbx_database_status.recvd_initial_deposition_date 2009-04-01 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Montange, R.K.' 1 'Batey, R.T.' 2 # _citation.id primary _citation.title 'Discrimination between Closely Related Cellular Metabolites by the SAM-I Riboswitch.' _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 396 _citation.page_first 761 _citation.page_last 772 _citation.year 2010 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 20006621 _citation.pdbx_database_id_DOI 10.1016/j.jmb.2009.12.007 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Montange, R.K.' 1 ? primary 'Mondragon, E.' 2 ? primary 'van Tyne, D.' 3 ? primary 'Garst, A.D.' 4 ? primary 'Ceres, P.' 5 ? primary 'Batey, R.T.' 6 ? # _cell.entry_id 3GX3 _cell.length_a 62.427 _cell.length_b 62.427 _cell.length_c 158.221 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3GX3 _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'RNA (94-MER)' 30568.338 1 ? 'U34C, A94G' ? ? 2 non-polymer syn S-ADENOSYL-L-HOMOCYSTEINE 384.411 1 ? ? ? ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 9 ? ? ? ? 4 non-polymer syn 'POTASSIUM ION' 39.098 1 ? ? ? ? 5 water nat water 18.015 12 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GGCUUAUCAAGAGAGGUGGAGGGACUGGCCCGACGAAACCCGGCAACCAGAAAUGGUGCCAAUUCCUGCAGCGGAAACGU UGAAAGAUGAGCCG ; _entity_poly.pdbx_seq_one_letter_code_can ;GGCUUAUCAAGAGAGGUGGAGGGACUGGCCCGACGAAACCCGGCAACCAGAAAUGGUGCCAAUUCCUGCAGCGGAAACGU UGAAAGAUGAGCCG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 C n 1 4 U n 1 5 U n 1 6 A n 1 7 U n 1 8 C n 1 9 A n 1 10 A n 1 11 G n 1 12 A n 1 13 G n 1 14 A n 1 15 G n 1 16 G n 1 17 U n 1 18 G n 1 19 G n 1 20 A n 1 21 G n 1 22 G n 1 23 G n 1 24 A n 1 25 C n 1 26 U n 1 27 G n 1 28 G n 1 29 C n 1 30 C n 1 31 C n 1 32 G n 1 33 A n 1 34 C n 1 35 G n 1 36 A n 1 37 A n 1 38 A n 1 39 C n 1 40 C n 1 41 C n 1 42 G n 1 43 G n 1 44 C n 1 45 A n 1 46 A n 1 47 C n 1 48 C n 1 49 A n 1 50 G n 1 51 A n 1 52 A n 1 53 A n 1 54 U n 1 55 G n 1 56 G n 1 57 U n 1 58 G n 1 59 C n 1 60 C n 1 61 A n 1 62 A n 1 63 U n 1 64 U n 1 65 C n 1 66 C n 1 67 U n 1 68 G n 1 69 C n 1 70 A n 1 71 G n 1 72 C n 1 73 G n 1 74 G n 1 75 A n 1 76 A n 1 77 A n 1 78 C n 1 79 G n 1 80 U n 1 81 U n 1 82 G n 1 83 A n 1 84 A n 1 85 A n 1 86 G n 1 87 A n 1 88 U n 1 89 G n 1 90 A n 1 91 G n 1 92 C n 1 93 C n 1 94 G n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'the sequence is based on a naturally occurring sequence found in T. tengcongensis' # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 3GX3 _struct_ref.pdbx_db_accession 3GX3 _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3GX3 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 94 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 3GX3 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 94 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 94 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 K non-polymer . 'POTASSIUM ION' ? 'K 1' 39.098 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 SAH 'L-peptide linking' n S-ADENOSYL-L-HOMOCYSTEINE ? 'C14 H20 N6 O5 S' 384.411 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # _exptl.entry_id 3GX3 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.52 _exptl_crystal.density_percent_sol 51.22 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details ;20 mM magnesium chloride, 80 mM potassium chloride, 12 mM spermine, 10% MPD, 40 mM cacodylate, pH 7.0, VAPOR DIFFUSION, HANGING DROP ; # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 'magnesium chloride' ? ? ? 1 2 1 'potassium chloride' ? ? ? 1 3 1 spermine ? ? ? 1 4 1 MPD ? ? ? 1 5 1 cacodylate ? ? ? 1 6 2 'magnesium chloride' ? ? ? 1 7 2 'potassium chloride' ? ? ? 1 8 2 spermine ? ? ? 1 9 2 MPD ? ? ? 1 10 2 cacodylate ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IV++' _diffrn_detector.pdbx_collection_date 2009-01-19 _diffrn_detector.details 'osmic mirror' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Ni filter' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.54 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RUH2R' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.54 # _reflns.entry_id 3GX3 _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 20 _reflns.d_resolution_high 2.7 _reflns.number_obs 8993 _reflns.number_all ? _reflns.percent_possible_obs 98.3 _reflns.pdbx_Rmerge_I_obs 0.075 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 15.7 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 6.74 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.7 _reflns_shell.d_res_low 2.8 _reflns_shell.percent_possible_all 97.6 _reflns_shell.Rmerge_I_obs 0.369 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 4.6 _reflns_shell.pdbx_redundancy 7.06 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 3GX3 _refine.ls_number_reflns_obs 8977 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.20 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 19.741 _refine.ls_d_res_high 2.700 _refine.ls_percent_reflns_obs 98.11 _refine.ls_R_factor_obs 0.2370 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2311 _refine.ls_R_factor_R_free 0.2907 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.99 _refine.ls_number_reflns_R_free 897 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 54.6 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.245 _refine.solvent_model_param_bsol 23.380 _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model 'pdb entry 2GIS' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.54 _refine.pdbx_overall_phase_error 33.49 _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 2030 _refine_hist.pdbx_number_atoms_ligand 36 _refine_hist.number_atoms_solvent 12 _refine_hist.number_atoms_total 2078 _refine_hist.d_res_high 2.700 _refine_hist.d_res_low 19.741 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.008 ? ? 2304 'X-RAY DIFFRACTION' ? f_angle_d 2.600 ? ? 3592 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 30.065 ? ? 1323 'X-RAY DIFFRACTION' ? f_chiral_restr 0.232 ? ? 475 'X-RAY DIFFRACTION' ? f_plane_restr 0.008 ? ? 96 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.number_reflns_obs 'X-RAY DIFFRACTION' . 2.700 2.8688 1298 0.4217 98.00 0.4553 . . 144 . . . . 'X-RAY DIFFRACTION' . 2.8688 3.0896 1309 0.3478 98.00 0.3488 . . 145 . . . . 'X-RAY DIFFRACTION' . 3.0896 3.3991 1330 0.2326 98.00 0.3326 . . 147 . . . . 'X-RAY DIFFRACTION' . 3.3991 3.8877 1337 0.2221 99.00 0.3203 . . 149 . . . . 'X-RAY DIFFRACTION' . 3.8877 4.8857 1363 0.1977 99.00 0.2785 . . 151 . . . . 'X-RAY DIFFRACTION' . 4.8857 19.7417 1443 0.1841 98.00 0.2202 . . 161 . . . . # _struct.entry_id 3GX3 _struct.title 'Crystal structure of the T. tengcongensis SAM-I riboswitch variant U34C/A94G bound with SAH' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3GX3 _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'kink-turn, four-way junction, pseudoknot, riboswitch, RNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 3 ? I N N 3 ? J N N 3 ? K N N 3 ? L N N 4 ? M N N 5 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A A 10 OP2 ? ? ? 1_555 J MG . MG ? ? A A 10 A MG 208 1_555 ? ? ? ? ? ? ? 2.145 ? ? metalc2 metalc ? ? A G 27 O6 ? ? ? 1_555 I MG . MG ? ? A G 27 A MG 207 1_555 ? ? ? ? ? ? ? 2.919 ? ? metalc3 metalc ? ? A A 53 OP2 ? ? ? 1_555 D MG . MG ? ? A A 53 A MG 202 1_555 ? ? ? ? ? ? ? 2.659 ? ? metalc4 metalc ? ? A U 64 O2 ? ? ? 1_555 G MG . MG ? ? A U 64 A MG 205 1_555 ? ? ? ? ? ? ? 2.837 ? ? metalc5 metalc ? ? A U 64 OP2 ? ? ? 1_555 J MG . MG ? ? A U 64 A MG 208 1_555 ? ? ? ? ? ? ? 2.711 ? ? metalc6 metalc ? ? A C 65 OP2 ? ? ? 1_555 K MG . MG ? ? A C 65 A MG 209 1_555 ? ? ? ? ? ? ? 2.739 ? ? metalc7 metalc ? ? M HOH . O ? ? ? 1_555 C MG . MG ? ? A HOH 95 A MG 201 1_555 ? ? ? ? ? ? ? 2.567 ? ? hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 93 N3 ? ? A G 1 A C 93 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 93 O2 ? ? A G 1 A C 93 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 93 N4 ? ? A G 1 A C 93 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 A C 92 O2 ? ? A G 2 A C 92 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog5 hydrog ? ? A C 3 N3 ? ? ? 1_555 A G 91 N1 ? ? A C 3 A G 91 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 3 N4 ? ? ? 1_555 A G 91 O6 ? ? A C 3 A G 91 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A C 3 O2 ? ? ? 1_555 A G 91 N2 ? ? A C 3 A G 91 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A U 4 N3 ? ? ? 1_555 A A 90 N1 ? ? A U 4 A A 90 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A U 4 O4 ? ? ? 1_555 A A 90 N6 ? ? A U 4 A A 90 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A U 5 N3 ? ? ? 1_555 A G 89 O6 ? ? A U 5 A G 89 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog11 hydrog ? ? A U 5 O2 ? ? ? 1_555 A G 89 N1 ? ? A U 5 A G 89 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog12 hydrog ? ? A A 6 N1 ? ? ? 1_555 A U 88 N3 ? ? A A 6 A U 88 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A A 6 N6 ? ? ? 1_555 A U 88 O4 ? ? A A 6 A U 88 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A U 7 N3 ? ? ? 1_555 A A 87 N1 ? ? A U 7 A A 87 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog15 hydrog ? ? A C 8 N3 ? ? ? 1_555 A G 86 N1 ? ? A C 8 A G 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A C 8 N4 ? ? ? 1_555 A G 86 O6 ? ? A C 8 A G 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A C 8 O2 ? ? ? 1_555 A G 86 N2 ? ? A C 8 A G 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A G 11 N2 ? ? ? 1_555 A C 44 O2 ? ? A G 11 A C 44 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog19 hydrog ? ? A A 12 N3 ? ? ? 1_555 A G 43 N2 ? ? A A 12 A G 43 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ? hydrog20 hydrog ? ? A G 13 N1 ? ? ? 1_555 A C 41 N3 ? ? A G 13 A C 41 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog21 hydrog ? ? A G 15 N1 ? ? ? 1_555 A C 40 N3 ? ? A G 15 A C 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A G 15 N2 ? ? ? 1_555 A C 40 O2 ? ? A G 15 A C 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A G 15 O6 ? ? ? 1_555 A C 40 N4 ? ? A G 15 A C 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A G 16 N1 ? ? ? 1_555 A C 39 N3 ? ? A G 16 A C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A G 16 N2 ? ? ? 1_555 A C 39 O2 ? ? A G 16 A C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A G 16 O6 ? ? ? 1_555 A C 39 N4 ? ? A G 16 A C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A U 17 N3 ? ? ? 1_555 A A 38 N1 ? ? A U 17 A A 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A U 17 O4 ? ? ? 1_555 A A 38 N6 ? ? A U 17 A A 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A G 18 N2 ? ? ? 1_555 A A 37 N7 ? ? A G 18 A A 37 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog30 hydrog ? ? A G 18 N3 ? ? ? 1_555 A A 37 N6 ? ? A G 18 A A 37 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog31 hydrog ? ? A G 19 N2 ? ? ? 1_555 A A 36 N7 ? ? A G 19 A A 36 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog32 hydrog ? ? A A 20 N6 ? ? ? 1_555 A G 35 N3 ? ? A A 20 A G 35 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog33 hydrog ? ? A A 20 N7 ? ? ? 1_555 A G 35 N2 ? ? A A 20 A G 35 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog34 hydrog ? ? A G 21 N1 ? ? ? 1_555 A C 31 N3 ? ? A G 21 A C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A G 21 N2 ? ? ? 1_555 A C 31 O2 ? ? A G 21 A C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A G 21 O6 ? ? ? 1_555 A C 31 N4 ? ? A G 21 A C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A G 22 N1 ? ? ? 1_555 A C 30 N3 ? ? A G 22 A C 30 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog38 hydrog ? ? A G 23 N1 ? ? ? 1_555 A C 29 N3 ? ? A G 23 A C 29 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog39 hydrog ? ? A G 23 N2 ? ? ? 1_555 A A 62 N1 ? ? A G 23 A A 62 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog40 hydrog ? ? A G 23 N3 ? ? ? 1_555 A A 62 N6 ? ? A G 23 A A 62 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog41 hydrog ? ? A C 25 N3 ? ? ? 1_555 A G 68 N1 ? ? A C 25 A G 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A C 25 N4 ? ? ? 1_555 A G 68 O6 ? ? A C 25 A G 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A C 25 O2 ? ? ? 1_555 A G 68 N2 ? ? A C 25 A G 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A U 26 N3 ? ? ? 1_555 A U 67 O2 ? ? A U 26 A U 67 1_555 ? ? ? ? ? ? 'U-U MISPAIR' ? ? ? hydrog45 hydrog ? ? A G 27 N1 ? ? ? 1_555 A C 66 N3 ? ? A G 27 A C 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A G 27 N2 ? ? ? 1_555 A C 66 O2 ? ? A G 27 A C 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A G 27 O6 ? ? ? 1_555 A C 66 N4 ? ? A G 27 A C 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A G 28 N1 ? ? ? 1_555 A C 65 N3 ? ? A G 28 A C 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A G 28 N2 ? ? ? 1_555 A C 65 O2 ? ? A G 28 A C 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A G 28 O6 ? ? ? 1_555 A C 65 N4 ? ? A G 28 A C 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A C 30 O2 ? ? ? 1_555 A A 61 N6 ? ? A C 30 A A 61 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog52 hydrog ? ? A G 42 N1 ? ? ? 1_555 A C 60 N3 ? ? A G 42 A C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A G 42 N2 ? ? ? 1_555 A C 60 O2 ? ? A G 42 A C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A G 42 O6 ? ? ? 1_555 A C 60 N4 ? ? A G 42 A C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A G 43 N1 ? ? ? 1_555 A C 59 N3 ? ? A G 43 A C 59 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? A G 43 N2 ? ? ? 1_555 A C 59 O2 ? ? A G 43 A C 59 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? A G 43 O6 ? ? ? 1_555 A C 59 N4 ? ? A G 43 A C 59 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? A C 44 N3 ? ? ? 1_555 A G 58 N1 ? ? A C 44 A G 58 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? A C 44 N4 ? ? ? 1_555 A G 58 O6 ? ? A C 44 A G 58 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? A C 44 O2 ? ? ? 1_555 A G 58 N2 ? ? A C 44 A G 58 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? A A 46 N3 ? ? ? 1_555 A C 47 N4 ? ? A A 46 A C 47 1_555 ? ? ? ? ? ? 'A-C MISPAIR' ? ? ? hydrog62 hydrog ? ? A C 47 N3 ? ? ? 1_555 A G 56 N1 ? ? A C 47 A G 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? A C 47 N4 ? ? ? 1_555 A G 56 O6 ? ? A C 47 A G 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? A C 47 O2 ? ? ? 1_555 A G 56 N2 ? ? A C 47 A G 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? A C 48 N3 ? ? ? 1_555 A G 55 N1 ? ? A C 48 A G 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? A C 48 N4 ? ? ? 1_555 A G 55 O6 ? ? A C 48 A G 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? A C 48 O2 ? ? ? 1_555 A G 55 N2 ? ? A C 48 A G 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? A A 49 N1 ? ? ? 1_555 A U 54 N3 ? ? A A 49 A U 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? A A 49 N6 ? ? ? 1_555 A U 54 O4 ? ? A A 49 A U 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? A G 50 N2 ? ? ? 1_555 A A 53 N7 ? ? A G 50 A A 53 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog71 hydrog ? ? A U 64 N3 ? ? ? 1_555 A A 85 N1 ? ? A U 64 A A 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? A U 64 O4 ? ? ? 1_555 A A 85 N6 ? ? A U 64 A A 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? A C 69 N3 ? ? ? 1_555 A G 82 N1 ? ? A C 69 A G 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? A C 69 N4 ? ? ? 1_555 A G 82 O6 ? ? A C 69 A G 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? A C 69 O2 ? ? ? 1_555 A G 82 N2 ? ? A C 69 A G 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? A A 70 N1 ? ? ? 1_555 A U 81 N3 ? ? A A 70 A U 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog77 hydrog ? ? A A 70 N6 ? ? ? 1_555 A U 81 O4 ? ? A A 70 A U 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog78 hydrog ? ? A G 71 N1 ? ? ? 1_555 A U 80 O2 ? ? A G 71 A U 80 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog79 hydrog ? ? A G 71 O6 ? ? ? 1_555 A U 80 N3 ? ? A G 71 A U 80 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog80 hydrog ? ? A C 72 N3 ? ? ? 1_555 A G 79 N1 ? ? A C 72 A G 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog81 hydrog ? ? A C 72 N4 ? ? ? 1_555 A G 79 O6 ? ? A C 72 A G 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog82 hydrog ? ? A C 72 O2 ? ? ? 1_555 A G 79 N2 ? ? A C 72 A G 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog83 hydrog ? ? A G 73 N1 ? ? ? 1_555 A C 78 N3 ? ? A G 73 A C 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog84 hydrog ? ? A G 73 N2 ? ? ? 1_555 A C 78 O2 ? ? A G 73 A C 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog85 hydrog ? ? A G 73 O6 ? ? ? 1_555 A C 78 N4 ? ? A G 73 A C 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog86 hydrog ? ? A G 74 N2 ? ? ? 1_555 A A 77 N7 ? ? A G 74 A A 77 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A SAH 301 ? 10 'BINDING SITE FOR RESIDUE SAH A 301' AC2 Software A MG 201 ? 1 'BINDING SITE FOR RESIDUE MG A 201' AC3 Software A MG 202 ? 3 'BINDING SITE FOR RESIDUE MG A 202' AC4 Software A MG 204 ? 4 'BINDING SITE FOR RESIDUE MG A 204' AC5 Software A MG 205 ? 3 'BINDING SITE FOR RESIDUE MG A 205' AC6 Software A MG 206 ? 1 'BINDING SITE FOR RESIDUE MG A 206' AC7 Software A MG 207 ? 2 'BINDING SITE FOR RESIDUE MG A 207' AC8 Software A MG 208 ? 3 'BINDING SITE FOR RESIDUE MG A 208' AC9 Software A MG 209 ? 4 'BINDING SITE FOR RESIDUE MG A 209' BC1 Software A K 210 ? 2 'BINDING SITE FOR RESIDUE K A 210' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 10 A A 6 ? A A 6 . ? 1_555 ? 2 AC1 10 U A 7 ? U A 7 . ? 1_555 ? 3 AC1 10 G A 11 ? G A 11 . ? 1_555 ? 4 AC1 10 A A 45 ? A A 45 . ? 1_555 ? 5 AC1 10 C A 47 ? C A 47 . ? 1_555 ? 6 AC1 10 U A 57 ? U A 57 . ? 1_555 ? 7 AC1 10 G A 58 ? G A 58 . ? 1_555 ? 8 AC1 10 C A 59 ? C A 59 . ? 1_555 ? 9 AC1 10 U A 88 ? U A 88 . ? 1_555 ? 10 AC1 10 G A 89 ? G A 89 . ? 1_555 ? 11 AC2 1 HOH M . ? HOH A 95 . ? 1_555 ? 12 AC3 3 G A 50 ? G A 50 . ? 1_555 ? 13 AC3 3 A A 52 ? A A 52 . ? 1_555 ? 14 AC3 3 A A 53 ? A A 53 . ? 1_555 ? 15 AC4 4 A A 70 ? A A 70 . ? 1_555 ? 16 AC4 4 G A 71 ? G A 71 . ? 1_555 ? 17 AC4 4 G A 79 ? G A 79 . ? 1_555 ? 18 AC4 4 U A 80 ? U A 80 . ? 1_555 ? 19 AC5 3 A A 24 ? A A 24 . ? 1_555 ? 20 AC5 3 U A 64 ? U A 64 . ? 1_555 ? 21 AC5 3 U A 67 ? U A 67 . ? 1_555 ? 22 AC6 1 HOH M . ? HOH A 96 . ? 7_555 ? 23 AC7 2 U A 26 ? U A 26 . ? 1_555 ? 24 AC7 2 G A 27 ? G A 27 . ? 1_555 ? 25 AC8 3 A A 10 ? A A 10 . ? 1_555 ? 26 AC8 3 G A 11 ? G A 11 . ? 1_555 ? 27 AC8 3 U A 64 ? U A 64 . ? 1_555 ? 28 AC9 4 A A 62 ? A A 62 . ? 1_555 ? 29 AC9 4 U A 63 ? U A 63 . ? 1_555 ? 30 AC9 4 U A 64 ? U A 64 . ? 1_555 ? 31 AC9 4 C A 65 ? C A 65 . ? 1_555 ? 32 BC1 2 U A 5 ? U A 5 . ? 1_555 ? 33 BC1 2 U A 88 ? U A 88 . ? 1_555 ? # _database_PDB_matrix.entry_id 3GX3 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3GX3 _atom_sites.fract_transf_matrix[1][1] 0.016019 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016019 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006320 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C K MG N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 G 2 2 2 G G A . n A 1 3 C 3 3 3 C C A . n A 1 4 U 4 4 4 U U A . n A 1 5 U 5 5 5 U U A . n A 1 6 A 6 6 6 A A A . n A 1 7 U 7 7 7 U U A . n A 1 8 C 8 8 8 C C A . n A 1 9 A 9 9 9 A A A . n A 1 10 A 10 10 10 A A A . n A 1 11 G 11 11 11 G G A . n A 1 12 A 12 12 12 A A A . n A 1 13 G 13 13 13 G G A . n A 1 14 A 14 14 14 A A A . n A 1 15 G 15 15 15 G G A . n A 1 16 G 16 16 16 G G A . n A 1 17 U 17 17 17 U U A . n A 1 18 G 18 18 18 G G A . n A 1 19 G 19 19 19 G G A . n A 1 20 A 20 20 20 A A A . n A 1 21 G 21 21 21 G G A . n A 1 22 G 22 22 22 G G A . n A 1 23 G 23 23 23 G G A . n A 1 24 A 24 24 24 A A A . n A 1 25 C 25 25 25 C C A . n A 1 26 U 26 26 26 U U A . n A 1 27 G 27 27 27 G G A . n A 1 28 G 28 28 28 G G A . n A 1 29 C 29 29 29 C C A . n A 1 30 C 30 30 30 C C A . n A 1 31 C 31 31 31 C C A . n A 1 32 G 32 32 32 G G A . n A 1 33 A 33 33 33 A A A . n A 1 34 C 34 34 34 C C A . n A 1 35 G 35 35 35 G G A . n A 1 36 A 36 36 36 A A A . n A 1 37 A 37 37 37 A A A . n A 1 38 A 38 38 38 A A A . n A 1 39 C 39 39 39 C C A . n A 1 40 C 40 40 40 C C A . n A 1 41 C 41 41 41 C C A . n A 1 42 G 42 42 42 G G A . n A 1 43 G 43 43 43 G G A . n A 1 44 C 44 44 44 C C A . n A 1 45 A 45 45 45 A A A . n A 1 46 A 46 46 46 A A A . n A 1 47 C 47 47 47 C C A . n A 1 48 C 48 48 48 C C A . n A 1 49 A 49 49 49 A A A . n A 1 50 G 50 50 50 G G A . n A 1 51 A 51 51 51 A A A . n A 1 52 A 52 52 52 A A A . n A 1 53 A 53 53 53 A A A . n A 1 54 U 54 54 54 U U A . n A 1 55 G 55 55 55 G G A . n A 1 56 G 56 56 56 G G A . n A 1 57 U 57 57 57 U U A . n A 1 58 G 58 58 58 G G A . n A 1 59 C 59 59 59 C C A . n A 1 60 C 60 60 60 C C A . n A 1 61 A 61 61 61 A A A . n A 1 62 A 62 62 62 A A A . n A 1 63 U 63 63 63 U U A . n A 1 64 U 64 64 64 U U A . n A 1 65 C 65 65 65 C C A . n A 1 66 C 66 66 66 C C A . n A 1 67 U 67 67 67 U U A . n A 1 68 G 68 68 68 G G A . n A 1 69 C 69 69 69 C C A . n A 1 70 A 70 70 70 A A A . n A 1 71 G 71 71 71 G G A . n A 1 72 C 72 72 72 C C A . n A 1 73 G 73 73 73 G G A . n A 1 74 G 74 74 74 G G A . n A 1 75 A 75 75 75 A A A . n A 1 76 A 76 76 76 A A A . n A 1 77 A 77 77 77 A A A . n A 1 78 C 78 78 78 C C A . n A 1 79 G 79 79 79 G G A . n A 1 80 U 80 80 80 U U A . n A 1 81 U 81 81 81 U U A . n A 1 82 G 82 82 82 G G A . n A 1 83 A 83 83 83 A A A . n A 1 84 A 84 84 84 A A A . n A 1 85 A 85 85 85 A A A . n A 1 86 G 86 86 86 G G A . n A 1 87 A 87 87 87 A A A . n A 1 88 U 88 88 88 U U A . n A 1 89 G 89 89 89 G G A . n A 1 90 A 90 90 90 A A A . n A 1 91 G 91 91 91 G G A . n A 1 92 C 92 92 92 C C A . n A 1 93 C 93 93 93 C C A . n A 1 94 G 94 94 94 G G A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SAH 1 301 301 SAH SAH A . C 3 MG 1 201 201 MG MG A . D 3 MG 1 202 202 MG MG A . E 3 MG 1 203 203 MG MG A . F 3 MG 1 204 204 MG MG A . G 3 MG 1 205 205 MG MG A . H 3 MG 1 206 206 MG MG A . I 3 MG 1 207 207 MG MG A . J 3 MG 1 208 208 MG MG A . K 3 MG 1 209 209 MG MG A . L 4 K 1 210 210 K K A . M 5 HOH 1 95 1 HOH HOH A . M 5 HOH 2 96 2 HOH HOH A . M 5 HOH 3 97 3 HOH HOH A . M 5 HOH 4 98 4 HOH HOH A . M 5 HOH 5 99 5 HOH HOH A . M 5 HOH 6 100 6 HOH HOH A . M 5 HOH 7 101 7 HOH HOH A . M 5 HOH 8 102 8 HOH HOH A . M 5 HOH 9 103 9 HOH HOH A . M 5 HOH 10 104 10 HOH HOH A . M 5 HOH 11 105 11 HOH HOH A . M 5 HOH 12 106 12 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_conn_angle.id 1 _pdbx_struct_conn_angle.ptnr1_label_atom_id OP2 _pdbx_struct_conn_angle.ptnr1_label_alt_id ? _pdbx_struct_conn_angle.ptnr1_label_asym_id A _pdbx_struct_conn_angle.ptnr1_label_comp_id A _pdbx_struct_conn_angle.ptnr1_label_seq_id 10 _pdbx_struct_conn_angle.ptnr1_auth_atom_id ? _pdbx_struct_conn_angle.ptnr1_auth_asym_id A _pdbx_struct_conn_angle.ptnr1_auth_comp_id A _pdbx_struct_conn_angle.ptnr1_auth_seq_id 10 _pdbx_struct_conn_angle.ptnr1_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr1_symmetry 1_555 _pdbx_struct_conn_angle.ptnr2_label_atom_id MG _pdbx_struct_conn_angle.ptnr2_label_alt_id ? _pdbx_struct_conn_angle.ptnr2_label_asym_id J _pdbx_struct_conn_angle.ptnr2_label_comp_id MG _pdbx_struct_conn_angle.ptnr2_label_seq_id . _pdbx_struct_conn_angle.ptnr2_auth_atom_id ? _pdbx_struct_conn_angle.ptnr2_auth_asym_id A _pdbx_struct_conn_angle.ptnr2_auth_comp_id MG _pdbx_struct_conn_angle.ptnr2_auth_seq_id 208 _pdbx_struct_conn_angle.ptnr2_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr2_symmetry 1_555 _pdbx_struct_conn_angle.ptnr3_label_atom_id OP2 _pdbx_struct_conn_angle.ptnr3_label_alt_id ? _pdbx_struct_conn_angle.ptnr3_label_asym_id A _pdbx_struct_conn_angle.ptnr3_label_comp_id U _pdbx_struct_conn_angle.ptnr3_label_seq_id 64 _pdbx_struct_conn_angle.ptnr3_auth_atom_id ? _pdbx_struct_conn_angle.ptnr3_auth_asym_id A _pdbx_struct_conn_angle.ptnr3_auth_comp_id U _pdbx_struct_conn_angle.ptnr3_auth_seq_id 64 _pdbx_struct_conn_angle.ptnr3_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr3_symmetry 1_555 _pdbx_struct_conn_angle.value 80.3 _pdbx_struct_conn_angle.value_esd ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-01-12 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2023-09-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_initial_refinement_model 5 3 'Structure model' struct_conn 6 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_conn.pdbx_dist_value' 4 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 5 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 6 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 7 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 8 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 9 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 10 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 11 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 12 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 13 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 14 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 15 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 16 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 17 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CrystalClear 'data collection' . ? 1 PHENIX 'model building' . ? 2 PHENIX refinement '(phenix.refine)' ? 3 CrystalClear 'data reduction' . ? 4 CrystalClear 'data scaling' . ? 5 PHENIX phasing . ? 6 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 N2 _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 G _pdbx_validate_symm_contact.auth_seq_id_1 94 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 N2 _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 G _pdbx_validate_symm_contact.auth_seq_id_2 94 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 8_775 _pdbx_validate_symm_contact.dist 1.88 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 P _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 G _pdbx_validate_rmsd_bond.auth_seq_id_1 1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 OP3 _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 G _pdbx_validate_rmsd_bond.auth_seq_id_2 1 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.491 _pdbx_validate_rmsd_bond.bond_target_value 1.607 _pdbx_validate_rmsd_bond.bond_deviation -0.116 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.012 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 P A U 7 ? ? "O5'" A U 7 ? ? "C5'" A U 7 ? ? 108.29 120.90 -12.61 1.60 N 2 1 "O4'" A U 7 ? ? "C1'" A U 7 ? ? N1 A U 7 ? ? 102.23 108.20 -5.97 0.80 N 3 1 C5 A U 7 ? ? C6 A U 7 ? ? N1 A U 7 ? ? 126.04 122.70 3.34 0.50 N 4 1 "O4'" A A 9 ? ? "C1'" A A 9 ? ? N9 A A 9 ? ? 101.20 108.20 -7.00 0.80 N 5 1 "C3'" A A 10 ? ? "O3'" A A 10 ? ? P A G 11 ? ? 111.62 119.70 -8.08 1.20 Y 6 1 N3 A G 13 ? ? C4 A G 13 ? ? N9 A G 13 ? ? 121.28 126.00 -4.72 0.60 N 7 1 C8 A G 13 ? ? N9 A G 13 ? ? "C1'" A G 13 ? ? 136.79 127.00 9.79 1.30 N 8 1 C4 A G 13 ? ? N9 A G 13 ? ? "C1'" A G 13 ? ? 117.03 126.50 -9.47 1.30 N 9 1 "C3'" A A 14 ? ? "O3'" A A 14 ? ? P A G 15 ? ? 128.26 119.70 8.56 1.20 Y 10 1 P A G 15 ? ? "O5'" A G 15 ? ? "C5'" A G 15 ? ? 110.55 120.90 -10.35 1.60 N 11 1 "C3'" A G 15 ? ? "O3'" A G 15 ? ? P A G 16 ? ? 111.78 119.70 -7.92 1.20 Y 12 1 "C3'" A G 16 ? ? "O3'" A G 16 ? ? P A U 17 ? ? 107.77 119.70 -11.93 1.20 Y 13 1 "O3'" A G 18 ? ? P A G 19 ? ? "O5'" A G 19 ? ? 78.33 104.00 -25.67 1.90 Y 14 1 "O3'" A G 18 ? ? P A G 19 ? ? OP2 A G 19 ? ? 87.36 105.20 -17.84 2.20 Y 15 1 "O3'" A G 18 ? ? P A G 19 ? ? OP1 A G 19 ? ? 88.39 105.20 -16.81 2.20 Y 16 1 "O5'" A G 19 ? ? P A G 19 ? ? OP2 A G 19 ? ? 122.57 110.70 11.87 1.20 N 17 1 "C3'" A G 19 ? ? "O3'" A G 19 ? ? P A A 20 ? ? 128.26 119.70 8.56 1.20 Y 18 1 "C3'" A A 20 ? ? "O3'" A A 20 ? ? P A G 21 ? ? 128.54 119.70 8.84 1.20 Y 19 1 N9 A G 21 ? ? "C1'" A G 21 ? ? "C2'" A G 21 ? ? 102.51 112.00 -9.49 1.10 N 20 1 "C3'" A G 21 ? ? "O3'" A G 21 ? ? P A G 22 ? ? 112.44 119.70 -7.26 1.20 Y 21 1 "O3'" A U 26 ? ? P A G 27 ? ? "O5'" A G 27 ? ? 84.28 104.00 -19.72 1.90 Y 22 1 "O3'" A U 26 ? ? P A G 27 ? ? OP2 A G 27 ? ? 88.08 105.20 -17.12 2.20 Y 23 1 "O3'" A U 26 ? ? P A G 27 ? ? OP1 A G 27 ? ? 82.28 105.20 -22.92 2.20 Y 24 1 OP1 A G 27 ? ? P A G 27 ? ? OP2 A G 27 ? ? 129.09 119.60 9.49 1.50 N 25 1 "O5'" A G 27 ? ? P A G 27 ? ? OP2 A G 27 ? ? 118.76 110.70 8.06 1.20 N 26 1 "O4'" A C 30 ? ? "C1'" A C 30 ? ? N1 A C 30 ? ? 102.35 108.20 -5.85 0.80 N 27 1 "O4'" A C 34 ? ? "C1'" A C 34 ? ? N1 A C 34 ? ? 98.56 108.20 -9.64 0.80 N 28 1 "O3'" A A 38 ? ? P A C 39 ? ? "O5'" A C 39 ? ? 87.41 104.00 -16.59 1.90 Y 29 1 "O3'" A A 38 ? ? P A C 39 ? ? OP2 A C 39 ? ? 87.47 105.20 -17.73 2.20 Y 30 1 "O3'" A A 38 ? ? P A C 39 ? ? OP1 A C 39 ? ? 82.92 105.20 -22.28 2.20 Y 31 1 OP1 A C 39 ? ? P A C 39 ? ? OP2 A C 39 ? ? 130.97 119.60 11.37 1.50 N 32 1 "O5'" A C 39 ? ? P A C 39 ? ? OP2 A C 39 ? ? 118.48 110.70 7.78 1.20 N 33 1 "O4'" A C 40 ? ? "C1'" A C 40 ? ? N1 A C 40 ? ? 113.31 108.50 4.81 0.70 N 34 1 "O3'" A G 43 ? ? P A C 44 ? ? "O5'" A C 44 ? ? 84.59 104.00 -19.41 1.90 Y 35 1 "O3'" A G 43 ? ? P A C 44 ? ? OP2 A C 44 ? ? 82.30 105.20 -22.90 2.20 Y 36 1 "O3'" A G 43 ? ? P A C 44 ? ? OP1 A C 44 ? ? 89.49 105.20 -15.71 2.20 Y 37 1 "O5'" A C 44 ? ? P A C 44 ? ? OP2 A C 44 ? ? 119.98 110.70 9.28 1.20 N 38 1 P A C 47 ? ? "O5'" A C 47 ? ? "C5'" A C 47 ? ? 106.19 120.90 -14.71 1.60 N 39 1 N1 A C 47 ? ? "C1'" A C 47 ? ? "C2'" A C 47 ? ? 102.88 112.00 -9.12 1.10 N 40 1 "O3'" A A 52 ? ? P A A 53 ? ? "O5'" A A 53 ? ? 87.43 104.00 -16.57 1.90 Y 41 1 "O3'" A A 52 ? ? P A A 53 ? ? OP2 A A 53 ? ? 83.10 105.20 -22.10 2.20 Y 42 1 "O3'" A A 52 ? ? P A A 53 ? ? OP1 A A 53 ? ? 85.92 105.20 -19.28 2.20 Y 43 1 OP1 A A 53 ? ? P A A 53 ? ? OP2 A A 53 ? ? 131.63 119.60 12.03 1.50 N 44 1 "O5'" A A 53 ? ? P A A 53 ? ? OP2 A A 53 ? ? 118.63 110.70 7.93 1.20 N 45 1 "C3'" A U 63 ? ? "O3'" A U 63 ? ? P A U 64 ? ? 135.70 119.70 16.00 1.20 Y 46 1 "O3'" A U 63 ? ? P A U 64 ? ? OP1 A U 64 ? ? 118.16 110.50 7.66 1.10 Y 47 1 N1 A C 65 ? ? "C1'" A C 65 ? ? "C2'" A C 65 ? ? 99.65 112.00 -12.35 1.10 N 48 1 "O4'" A C 65 ? ? "C1'" A C 65 ? ? N1 A C 65 ? ? 114.53 108.50 6.03 0.70 N 49 1 "C3'" A C 65 ? ? "O3'" A C 65 ? ? P A C 66 ? ? 110.93 119.70 -8.77 1.20 Y 50 1 "C3'" A U 67 ? ? "O3'" A U 67 ? ? P A G 68 ? ? 127.49 119.70 7.79 1.20 Y 51 1 "O3'" A U 67 ? ? P A G 68 ? ? "O5'" A G 68 ? ? 82.60 104.00 -21.40 1.90 Y 52 1 "O3'" A U 67 ? ? P A G 68 ? ? OP2 A G 68 ? ? 85.70 105.20 -19.50 2.20 Y 53 1 "O3'" A U 67 ? ? P A G 68 ? ? OP1 A G 68 ? ? 88.13 105.20 -17.07 2.20 Y 54 1 OP1 A G 68 ? ? P A G 68 ? ? OP2 A G 68 ? ? 129.54 119.60 9.94 1.50 N 55 1 "O5'" A G 68 ? ? P A G 68 ? ? OP2 A G 68 ? ? 118.88 110.70 8.18 1.20 N 56 1 N3 A G 73 ? ? C4 A G 73 ? ? N9 A G 73 ? ? 122.13 126.00 -3.87 0.60 N 57 1 "O3'" A A 90 ? ? P A G 91 ? ? "O5'" A G 91 ? ? 85.97 104.00 -18.03 1.90 Y 58 1 "O3'" A A 90 ? ? P A G 91 ? ? OP2 A G 91 ? ? 88.98 105.20 -16.22 2.20 Y 59 1 "O3'" A A 90 ? ? P A G 91 ? ? OP1 A G 91 ? ? 83.19 105.20 -22.01 2.20 Y 60 1 OP1 A G 91 ? ? P A G 91 ? ? OP2 A G 91 ? ? 129.98 119.60 10.38 1.50 N 61 1 C8 A G 94 ? ? N9 A G 94 ? ? C4 A G 94 ? ? 103.54 106.40 -2.86 0.40 N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 HOH O O N N 111 HOH H1 H N N 112 HOH H2 H N N 113 K K K N N 114 MG MG MG N N 115 SAH N N N N 116 SAH CA C N S 117 SAH CB C N N 118 SAH CG C N N 119 SAH SD S N N 120 SAH C C N N 121 SAH O O N N 122 SAH OXT O N N 123 SAH "C5'" C N N 124 SAH "C4'" C N S 125 SAH "O4'" O N N 126 SAH "C3'" C N S 127 SAH "O3'" O N N 128 SAH "C2'" C N R 129 SAH "O2'" O N N 130 SAH "C1'" C N R 131 SAH N9 N Y N 132 SAH C8 C Y N 133 SAH N7 N Y N 134 SAH C5 C Y N 135 SAH C6 C Y N 136 SAH N6 N N N 137 SAH N1 N Y N 138 SAH C2 C Y N 139 SAH N3 N Y N 140 SAH C4 C Y N 141 SAH HN1 H N N 142 SAH HN2 H N N 143 SAH HA H N N 144 SAH HB1 H N N 145 SAH HB2 H N N 146 SAH HG1 H N N 147 SAH HG2 H N N 148 SAH HXT H N N 149 SAH "H5'1" H N N 150 SAH "H5'2" H N N 151 SAH "H4'" H N N 152 SAH "H3'" H N N 153 SAH "HO3'" H N N 154 SAH "H2'" H N N 155 SAH "HO2'" H N N 156 SAH "H1'" H N N 157 SAH H8 H N N 158 SAH HN61 H N N 159 SAH HN62 H N N 160 SAH H2 H N N 161 U OP3 O N N 162 U P P N N 163 U OP1 O N N 164 U OP2 O N N 165 U "O5'" O N N 166 U "C5'" C N N 167 U "C4'" C N R 168 U "O4'" O N N 169 U "C3'" C N S 170 U "O3'" O N N 171 U "C2'" C N R 172 U "O2'" O N N 173 U "C1'" C N R 174 U N1 N N N 175 U C2 C N N 176 U O2 O N N 177 U N3 N N N 178 U C4 C N N 179 U O4 O N N 180 U C5 C N N 181 U C6 C N N 182 U HOP3 H N N 183 U HOP2 H N N 184 U "H5'" H N N 185 U "H5''" H N N 186 U "H4'" H N N 187 U "H3'" H N N 188 U "HO3'" H N N 189 U "H2'" H N N 190 U "HO2'" H N N 191 U "H1'" H N N 192 U H3 H N N 193 U H5 H N N 194 U H6 H N N 195 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 HOH O H1 sing N N 116 HOH O H2 sing N N 117 SAH N CA sing N N 118 SAH N HN1 sing N N 119 SAH N HN2 sing N N 120 SAH CA CB sing N N 121 SAH CA C sing N N 122 SAH CA HA sing N N 123 SAH CB CG sing N N 124 SAH CB HB1 sing N N 125 SAH CB HB2 sing N N 126 SAH CG SD sing N N 127 SAH CG HG1 sing N N 128 SAH CG HG2 sing N N 129 SAH SD "C5'" sing N N 130 SAH C O doub N N 131 SAH C OXT sing N N 132 SAH OXT HXT sing N N 133 SAH "C5'" "C4'" sing N N 134 SAH "C5'" "H5'1" sing N N 135 SAH "C5'" "H5'2" sing N N 136 SAH "C4'" "O4'" sing N N 137 SAH "C4'" "C3'" sing N N 138 SAH "C4'" "H4'" sing N N 139 SAH "O4'" "C1'" sing N N 140 SAH "C3'" "O3'" sing N N 141 SAH "C3'" "C2'" sing N N 142 SAH "C3'" "H3'" sing N N 143 SAH "O3'" "HO3'" sing N N 144 SAH "C2'" "O2'" sing N N 145 SAH "C2'" "C1'" sing N N 146 SAH "C2'" "H2'" sing N N 147 SAH "O2'" "HO2'" sing N N 148 SAH "C1'" N9 sing N N 149 SAH "C1'" "H1'" sing N N 150 SAH N9 C8 sing Y N 151 SAH N9 C4 sing Y N 152 SAH C8 N7 doub Y N 153 SAH C8 H8 sing N N 154 SAH N7 C5 sing Y N 155 SAH C5 C6 sing Y N 156 SAH C5 C4 doub Y N 157 SAH C6 N6 sing N N 158 SAH C6 N1 doub Y N 159 SAH N6 HN61 sing N N 160 SAH N6 HN62 sing N N 161 SAH N1 C2 sing Y N 162 SAH C2 N3 doub Y N 163 SAH C2 H2 sing N N 164 SAH N3 C4 sing Y N 165 U OP3 P sing N N 166 U OP3 HOP3 sing N N 167 U P OP1 doub N N 168 U P OP2 sing N N 169 U P "O5'" sing N N 170 U OP2 HOP2 sing N N 171 U "O5'" "C5'" sing N N 172 U "C5'" "C4'" sing N N 173 U "C5'" "H5'" sing N N 174 U "C5'" "H5''" sing N N 175 U "C4'" "O4'" sing N N 176 U "C4'" "C3'" sing N N 177 U "C4'" "H4'" sing N N 178 U "O4'" "C1'" sing N N 179 U "C3'" "O3'" sing N N 180 U "C3'" "C2'" sing N N 181 U "C3'" "H3'" sing N N 182 U "O3'" "HO3'" sing N N 183 U "C2'" "O2'" sing N N 184 U "C2'" "C1'" sing N N 185 U "C2'" "H2'" sing N N 186 U "O2'" "HO2'" sing N N 187 U "C1'" N1 sing N N 188 U "C1'" "H1'" sing N N 189 U N1 C2 sing N N 190 U N1 C6 sing N N 191 U C2 O2 doub N N 192 U C2 N3 sing N N 193 U N3 C4 sing N N 194 U N3 H3 sing N N 195 U C4 O4 doub N N 196 U C4 C5 sing N N 197 U C5 C6 doub N N 198 U C5 H5 sing N N 199 U C6 H6 sing N N 200 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3GX3 'double helix' 3GX3 'a-form double helix' 3GX3 'hairpin loop' 3GX3 'bulge loop' 3GX3 'mismatched base pair' 3GX3 'triple helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A C 93 1_555 -0.761 0.116 0.254 3.759 -10.767 -2.911 1 A_G1:C93_A A 1 ? A 93 ? 19 1 1 A G 2 1_555 A C 92 1_555 -0.621 0.013 0.124 -5.894 -21.061 5.281 2 A_G2:C92_A A 2 ? A 92 ? 19 1 1 A C 3 1_555 A G 91 1_555 0.048 -0.267 0.179 -0.163 -15.378 -0.968 3 A_C3:G91_A A 3 ? A 91 ? 19 1 1 A U 4 1_555 A A 90 1_555 -0.084 -0.254 0.138 -12.149 -16.412 1.510 4 A_U4:A90_A A 4 ? A 90 ? 20 1 1 A U 5 1_555 A G 89 1_555 1.811 -0.564 0.565 -6.896 -12.408 1.565 5 A_U5:G89_A A 5 ? A 89 ? 28 1 1 A A 6 1_555 A U 88 1_555 -0.187 -0.217 0.001 9.285 -9.612 -0.793 6 A_A6:U88_A A 6 ? A 88 ? 20 1 1 A U 7 1_555 A A 87 1_555 -0.145 0.051 0.134 -6.803 -7.395 12.525 7 A_U7:A87_A A 7 ? A 87 ? ? 1 1 A C 8 1_555 A G 86 1_555 -0.267 -0.002 -0.104 11.175 -11.605 4.857 8 A_C8:G86_A A 8 ? A 86 ? 19 1 1 A U 64 1_555 A A 85 1_555 -0.875 -0.099 0.290 -2.549 -1.519 -5.432 9 A_U64:A85_A A 64 ? A 85 ? 20 1 1 A G 35 1_555 A A 20 1_555 6.564 -3.486 0.753 13.177 16.461 12.070 10 A_G35:A20_A A 35 ? A 20 ? 11 9 1 A A 36 1_555 A G 19 1_555 -6.839 -5.461 0.168 -21.201 -2.355 -6.768 11 A_A36:G19_A A 36 ? A 19 ? ? 10 1 A A 37 1_555 A G 18 1_555 -6.831 -3.468 -0.480 3.456 -4.114 10.493 12 A_A37:G18_A A 37 ? A 18 ? 11 9 1 A A 38 1_555 A U 17 1_555 -0.277 -0.071 0.119 13.102 -8.791 11.423 13 A_A38:U17_A A 38 ? A 17 ? 20 1 1 A C 39 1_555 A G 16 1_555 -0.071 -0.256 -0.898 14.294 -5.928 -1.381 14 A_C39:G16_A A 39 ? A 16 ? 19 1 1 A C 40 1_555 A G 15 1_555 0.304 -0.209 -0.583 -0.951 0.354 4.217 15 A_C40:G15_A A 40 ? A 15 ? 19 1 1 A C 41 1_555 A G 13 1_555 -0.494 0.506 0.247 -0.737 -7.957 17.757 16 A_C41:G13_A A 41 ? A 13 ? ? 1 1 A G 42 1_555 A C 60 1_555 -0.762 -0.239 0.040 1.862 -3.040 3.479 17 A_G42:C60_A A 42 ? A 60 ? 19 1 1 A G 43 1_555 A C 59 1_555 0.004 0.186 -0.063 -11.914 -14.456 8.280 18 A_G43:C59_A A 43 ? A 59 ? 19 1 1 A C 44 1_555 A G 58 1_555 0.495 -0.290 0.953 -22.254 -12.051 -7.226 19 A_C44:G58_A A 44 ? A 58 ? 19 1 1 A C 47 1_555 A G 56 1_555 0.048 0.029 -0.395 11.916 -7.766 -1.358 20 A_C47:G56_A A 47 ? A 56 ? 19 1 1 A C 48 1_555 A G 55 1_555 0.394 0.015 -0.277 10.865 -6.228 7.925 21 A_C48:G55_A A 48 ? A 55 ? 19 1 1 A A 49 1_555 A U 54 1_555 -0.549 -0.080 0.072 8.481 4.726 2.564 22 A_A49:U54_A A 49 ? A 54 ? 20 1 1 A G 50 1_555 A A 53 1_555 6.936 -4.609 0.450 26.430 1.002 -13.277 23 A_G50:A53_A A 50 ? A 53 ? ? ? 1 A G 21 1_555 A C 31 1_555 -0.022 -0.144 -0.410 -9.532 9.056 1.718 24 A_G21:C31_A A 21 ? A 31 ? 19 1 1 A G 22 1_555 A C 30 1_555 0.265 0.364 0.628 3.222 11.941 8.155 25 A_G22:C30_A A 22 ? A 30 ? ? 1 1 A G 23 1_555 A C 29 1_555 0.233 0.456 -0.094 4.995 -1.234 11.399 26 A_G23:C29_A A 23 ? A 29 ? ? 1 1 A C 65 1_555 A G 28 1_555 -0.361 0.074 0.207 8.229 -18.383 -1.451 27 A_C65:G28_A A 65 ? A 28 ? 19 1 1 A C 66 1_555 A G 27 1_555 0.194 -0.101 0.357 1.521 -28.002 10.354 28 A_C66:G27_A A 66 ? A 27 ? 19 1 1 A U 67 1_555 A U 26 1_555 1.374 -1.427 0.802 -7.451 -39.227 18.376 29 A_U67:U26_A A 67 ? A 26 ? 16 1 1 A G 68 1_555 A C 25 1_555 -0.442 -0.199 0.099 -27.126 -51.027 5.503 30 A_G68:C25_A A 68 ? A 25 ? 19 1 1 A C 69 1_555 A G 82 1_555 0.614 0.176 0.580 -9.413 -3.413 3.241 31 A_C69:G82_A A 69 ? A 82 ? 19 1 1 A A 70 1_555 A U 81 1_555 -0.157 0.083 0.410 -7.172 -4.702 10.791 32 A_A70:U81_A A 70 ? A 81 ? 20 1 1 A G 71 1_555 A U 80 1_555 -1.982 -0.499 -0.087 -5.723 -13.531 5.834 33 A_G71:U80_A A 71 ? A 80 ? 28 1 1 A C 72 1_555 A G 79 1_555 0.554 0.001 0.079 4.017 -11.735 5.529 34 A_C72:G79_A A 72 ? A 79 ? 19 1 1 A G 73 1_555 A C 78 1_555 0.210 0.035 -0.250 5.645 -2.233 4.706 35 A_G73:C78_A A 73 ? A 78 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A C 93 1_555 A G 2 1_555 A C 92 1_555 0.235 -1.772 3.350 -3.530 9.398 39.767 -3.521 -0.707 2.847 13.555 5.092 40.965 1 AA_G1G2:C92C93_AA A 1 ? A 93 ? A 2 ? A 92 ? 1 A G 2 1_555 A C 92 1_555 A C 3 1_555 A G 91 1_555 -0.938 -1.845 3.002 -4.584 2.526 34.052 -3.477 0.931 2.959 4.283 7.770 34.440 2 AA_G2C3:G91C92_AA A 2 ? A 92 ? A 3 ? A 91 ? 1 A C 3 1_555 A G 91 1_555 A U 4 1_555 A A 90 1_555 -0.046 -1.602 3.586 -0.782 9.937 32.817 -4.326 -0.049 2.989 17.103 1.345 34.257 3 AA_C3U4:A90G91_AA A 3 ? A 91 ? A 4 ? A 90 ? 1 A U 4 1_555 A A 90 1_555 A U 5 1_555 A G 89 1_555 0.065 -0.900 3.234 -1.295 9.250 37.508 -2.453 -0.252 2.935 14.119 1.977 38.613 4 AA_U4U5:G89A90_AA A 4 ? A 90 ? A 5 ? A 89 ? 1 A U 5 1_555 A G 89 1_555 A A 6 1_555 A U 88 1_555 -0.418 -1.473 2.753 4.673 5.659 23.558 -4.796 2.091 2.221 13.447 -11.105 24.659 5 AA_U5A6:U88G89_AA A 5 ? A 89 ? A 6 ? A 88 ? 1 A A 6 1_555 A U 88 1_555 A U 7 1_555 A A 87 1_555 0.485 -0.931 3.921 -1.758 17.554 33.310 -4.043 -1.012 3.045 28.291 2.833 37.576 6 AA_A6U7:A87U88_AA A 6 ? A 88 ? A 7 ? A 87 ? 1 A U 7 1_555 A A 87 1_555 A C 8 1_555 A G 86 1_555 0.302 -0.998 2.865 5.525 3.629 29.381 -2.566 0.398 2.735 7.043 -10.723 30.100 7 AA_U7C8:G86A87_AA A 7 ? A 87 ? A 8 ? A 86 ? 1 A C 8 1_555 A G 86 1_555 A U 64 1_555 A A 85 1_555 -1.188 -2.085 3.453 -6.713 8.368 35.666 -4.404 0.952 3.069 13.296 10.666 37.194 8 AA_C8U64:A85G86_AA A 8 ? A 86 ? A 64 ? A 85 ? 1 A G 35 1_555 A A 20 1_555 A A 36 1_555 A G 19 1_555 -1.429 -1.805 4.258 -13.205 -8.925 -12.415 9.164 -10.014 0.901 29.298 -43.346 -20.178 9 AA_G35A36:G19A20_AA A 35 ? A 20 ? A 36 ? A 19 ? 1 A A 36 1_555 A G 19 1_555 A A 37 1_555 A G 18 1_555 -0.316 -0.182 3.154 -9.463 4.911 37.568 -0.850 -0.641 3.095 7.443 14.344 38.999 10 AA_A36A37:G18G19_AA A 36 ? A 19 ? A 37 ? A 18 ? 1 A A 37 1_555 A G 18 1_555 A A 38 1_555 A U 17 1_555 -0.050 -0.295 3.272 -13.145 5.779 62.512 -0.529 -0.522 3.190 5.492 12.492 63.976 11 AA_A37A38:U17G18_AA A 37 ? A 18 ? A 38 ? A 17 ? 1 A A 38 1_555 A U 17 1_555 A C 39 1_555 A G 16 1_555 -0.683 -1.885 3.244 4.661 3.932 31.749 -4.044 2.006 2.869 7.106 -8.423 32.315 12 AA_A38C39:G16U17_AA A 38 ? A 17 ? A 39 ? A 16 ? 1 A C 39 1_555 A G 16 1_555 A C 40 1_555 A G 15 1_555 0.800 -2.255 3.821 0.284 12.563 32.249 -5.830 -1.302 2.782 21.620 -0.489 34.551 13 AA_C39C40:G15G16_AA A 39 ? A 16 ? A 40 ? A 15 ? 1 A C 40 1_555 A G 15 1_555 A C 41 1_555 A G 13 1_555 2.338 -1.071 3.129 -4.121 7.877 37.582 -2.485 -3.990 2.600 12.021 6.289 38.583 14 AA_C40C41:G13G15_AA A 40 ? A 15 ? A 41 ? A 13 ? 1 A C 41 1_555 A G 13 1_555 A G 42 1_555 A C 60 1_555 1.866 -1.140 3.185 -5.129 3.998 49.234 -1.633 -2.575 2.894 4.775 6.125 49.635 15 AA_C41G42:C60G13_AA A 41 ? A 13 ? A 42 ? A 60 ? 1 A G 42 1_555 A C 60 1_555 A G 43 1_555 A C 59 1_555 0.668 -1.803 3.570 -0.700 9.062 37.048 -3.940 -1.114 3.049 14.005 1.082 38.109 16 AA_G42G43:C59C60_AA A 42 ? A 60 ? A 43 ? A 59 ? 1 A G 43 1_555 A C 59 1_555 A C 44 1_555 A G 58 1_555 -1.371 -1.220 3.434 -9.146 -0.344 39.796 -1.708 0.859 3.659 -0.497 13.225 40.793 17 AA_G43C44:G58C59_AA A 43 ? A 59 ? A 44 ? A 58 ? 1 A C 44 1_555 A G 58 1_555 A C 47 1_555 A G 56 1_555 -3.735 -3.652 5.332 11.932 2.777 73.393 -3.158 3.667 4.645 2.308 -9.916 74.266 18 AA_C44C47:G56G58_AA A 44 ? A 58 ? A 47 ? A 56 ? 1 A C 47 1_555 A G 56 1_555 A C 48 1_555 A G 55 1_555 0.084 -1.587 3.360 -0.465 7.476 36.689 -3.437 -0.190 2.990 11.726 0.729 37.420 19 AA_C47C48:G55G56_AA A 47 ? A 56 ? A 48 ? A 55 ? 1 A C 48 1_555 A G 55 1_555 A A 49 1_555 A U 54 1_555 0.057 -2.360 3.373 -1.412 4.804 22.444 -7.540 -0.618 2.804 12.149 3.572 22.989 20 AA_C48A49:U54G55_AA A 48 ? A 55 ? A 49 ? A 54 ? 1 A A 49 1_555 A U 54 1_555 A G 50 1_555 A A 53 1_555 -1.872 -1.062 2.916 3.231 11.104 54.031 -1.702 2.183 2.562 12.067 -3.512 55.164 21 AA_A49G50:A53U54_AA A 49 ? A 54 ? A 50 ? A 53 ? 1 A G 21 1_555 A C 31 1_555 A G 22 1_555 A C 30 1_555 0.519 -2.446 2.831 -3.617 -9.063 29.551 -2.884 -1.639 3.333 -17.188 6.860 31.086 22 AA_G21G22:C30C31_AA A 21 ? A 31 ? A 22 ? A 30 ? 1 A G 22 1_555 A C 30 1_555 A G 23 1_555 A C 29 1_555 -0.338 -2.310 3.101 9.618 5.952 24.576 -6.235 2.807 2.206 13.130 -21.217 27.017 23 AA_G22G23:C29C30_AA A 22 ? A 30 ? A 23 ? A 29 ? 1 A G 23 1_555 A C 29 1_555 A C 65 1_555 A G 28 1_555 -3.065 -0.087 3.028 -8.242 0.273 48.756 -0.124 3.054 3.471 0.328 9.902 49.407 24 AA_G23C65:G28C29_AA A 23 ? A 29 ? A 65 ? A 28 ? 1 A C 65 1_555 A G 28 1_555 A C 66 1_555 A G 27 1_555 -0.512 -1.975 3.286 -2.903 7.542 28.456 -5.370 0.426 2.722 14.966 5.761 29.558 25 AA_C65C66:G27G28_AA A 65 ? A 28 ? A 66 ? A 27 ? 1 A C 66 1_555 A G 27 1_555 A U 67 1_555 A U 26 1_555 0.350 -0.104 3.427 -1.555 17.204 43.546 -1.637 -0.578 3.160 22.179 2.005 46.692 26 AA_C66U67:U26G27_AA A 66 ? A 27 ? A 67 ? A 26 ? 1 A U 67 1_555 A U 26 1_555 A G 68 1_555 A C 25 1_555 -0.489 -0.289 3.560 6.717 10.659 35.681 -1.912 1.679 3.207 16.764 -10.564 37.772 27 AA_U67G68:C25U26_AA A 67 ? A 26 ? A 68 ? A 25 ? 1 A C 69 1_555 A G 82 1_555 A A 70 1_555 A U 81 1_555 0.007 -1.984 2.889 -1.204 5.667 23.658 -6.151 -0.323 2.353 13.563 2.881 24.348 28 AA_C69A70:U81G82_AA A 69 ? A 82 ? A 70 ? A 81 ? 1 A A 70 1_555 A U 81 1_555 A G 71 1_555 A U 80 1_555 -0.529 -1.892 3.026 -2.057 5.927 27.179 -5.159 0.671 2.595 12.404 4.304 27.880 29 AA_A70G71:U80U81_AA A 70 ? A 81 ? A 71 ? A 80 ? 1 A G 71 1_555 A U 80 1_555 A C 72 1_555 A G 79 1_555 -0.190 -0.851 3.056 -4.178 4.024 41.940 -1.559 -0.132 2.970 5.590 5.803 42.321 30 AA_G71C72:G79U80_AA A 71 ? A 80 ? A 72 ? A 79 ? 1 A C 72 1_555 A G 79 1_555 A G 73 1_555 A C 78 1_555 -0.354 -1.837 3.328 2.268 7.607 25.903 -5.726 1.293 2.651 16.484 -4.914 27.072 31 AA_C72G73:C78G79_AA A 72 ? A 79 ? A 73 ? A 78 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 S-ADENOSYL-L-HOMOCYSTEINE SAH 3 'MAGNESIUM ION' MG 4 'POTASSIUM ION' K 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2GIS _pdbx_initial_refinement_model.details 'pdb entry 2GIS' #