HEADER OXIDOREDUCTASE 02-APR-09 3GX9 TITLE STRUCTURE OF MORPHINONE REDUCTASE N189A MUTANT IN COMPLEX WITH TITLE 2 TETRAHYDRONAD COMPND MOL_ID: 1; COMPND 2 MOLECULE: MORPHINONE REDUCTASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS PUTIDA; SOURCE 3 ORGANISM_TAXID: 303; SOURCE 4 STRAIN: M10; SOURCE 5 GENE: MORB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: JM109; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMORB2 KEYWDS H-TUNNELLING, FLAVOPROTEIN, NADH, MORPHINONE REDUCTASE, HYDRIDE KEYWDS 2 TRANSFER, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR P.LAFITE,N.S.SCRUTTON,D.LEYS REVDAT 3 01-NOV-23 3GX9 1 REMARK REVDAT 2 10-NOV-21 3GX9 1 REMARK SEQADV REVDAT 1 26-MAY-09 3GX9 0 JRNL AUTH C.R.PUDNEY,T.MCGRORY,P.LAFITE,J.PANG,S.HAY,D.LEYS, JRNL AUTH 2 M.J.SUTCLIFFE,N.S.SCRUTTON JRNL TITL PARALLEL PATHWAYS AND FREE-ENERGY LANDSCAPES FOR ENZYMATIC JRNL TITL 2 HYDRIDE TRANSFER PROBED BY HYDROSTATIC PRESSURE JRNL REF CHEMBIOCHEM V. 10 1379 2009 JRNL REFN ISSN 1439-4227 JRNL PMID 19405065 JRNL DOI 10.1002/CBIC.200900071 REMARK 2 REMARK 2 RESOLUTION. 2.28 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0070 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.28 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.90 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.3 REMARK 3 NUMBER OF REFLECTIONS : 22214 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1188 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.28 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.34 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1551 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.22 REMARK 3 BIN R VALUE (WORKING SET) : 0.3310 REMARK 3 BIN FREE R VALUE SET COUNT : 67 REMARK 3 BIN FREE R VALUE : 0.4220 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2777 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 57 REMARK 3 SOLVENT ATOMS : 174 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.02 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : -0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.242 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.203 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.129 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.289 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.921 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2952 ; 0.020 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4034 ; 1.795 ; 1.986 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 371 ; 6.657 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 140 ;38.020 ;23.286 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 413 ;15.905 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;17.133 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 427 ; 0.114 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2350 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1844 ; 0.877 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2936 ; 1.543 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1108 ; 2.570 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1098 ; 3.799 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3GX9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 06-APR-09. REMARK 100 THE DEPOSITION ID IS D_1000052420. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-APR-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9696 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23517 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.280 REMARK 200 RESOLUTION RANGE LOW (A) : 44.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.1 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.07700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.28 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.50 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.29100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2R14 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES, PH7.5, 0.1M MGCL2, 35% REMARK 280 PEG400, CRYSTALS WERE SOAKED IN A 50% AMMONIUM SULFATE SOLUTION, REMARK 280 CONTAINING 100MM NADH4, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y+1/2,Z REMARK 290 7555 -X+1/2,Y,-Z REMARK 290 8555 X,-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.82550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 89.79350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 61.47050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 89.79350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.82550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 61.47050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 24.82550 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 61.47050 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 89.79350 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 61.47050 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 24.82550 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 89.79350 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 122.94100 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 89.79350 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 391 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 ASP A 3 REMARK 465 THR A 4 REMARK 465 SER A 5 REMARK 465 PHE A 6 REMARK 465 SER A 7 REMARK 465 TRP A 279 REMARK 465 ILE A 280 REMARK 465 GLY A 281 REMARK 465 GLY A 282 REMARK 465 ASP A 283 REMARK 465 GLY A 377 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 132 CG CD OE1 OE2 REMARK 470 THR A 158 OG1 CG2 REMARK 470 GLN A 170 CG CD OE1 NE2 REMARK 470 ARG A 203 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 213 CG CD OE1 OE2 REMARK 470 ARG A 217 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 266 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 278 CG OD1 OD2 REMARK 470 ILE A 284 CB CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG A 100 O HOH A 508 2.11 REMARK 500 O HOH A 381 O HOH A 519 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 319 CB - CG - OD1 ANGL. DEV. = -6.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 36 73.75 -117.33 REMARK 500 ILE A 78 41.60 -146.95 REMARK 500 ASP A 119 28.20 49.85 REMARK 500 ALA A 188 -129.32 -128.85 REMARK 500 ALA A 189 133.20 -172.23 REMARK 500 ALA A 189 66.15 0.19 REMARK 500 ALA A 190 23.31 34.75 REMARK 500 ASP A 206 -168.92 -78.59 REMARK 500 GLN A 207 5.17 -67.72 REMARK 500 PHE A 242 -17.16 84.65 REMARK 500 ALA A 359 -130.79 -147.83 REMARK 500 TYR A 363 -70.79 -134.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 TXD A 600 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMN A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TXD A 600 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2R14 RELATED DB: PDB REMARK 900 STRUCTURE OF THE WILD TYPE ENZYME IN COMPLEX WITH TETRAHYDRONAD REMARK 900 RELATED ID: 1GWJ RELATED DB: PDB REMARK 900 STRUCTURE OF THE NON-LIGAND BOUND WILD TYPE ENZYME DBREF 3GX9 A 1 377 UNP Q51990 Q51990_PSEPU 1 377 SEQADV 3GX9 ALA A 189 UNP Q51990 ASN 189 ENGINEERED MUTATION SEQRES 1 A 377 MET PRO ASP THR SER PHE SER ASN PRO GLY LEU PHE THR SEQRES 2 A 377 PRO LEU GLN LEU GLY SER LEU SER LEU PRO ASN ARG VAL SEQRES 3 A 377 ILE MET ALA PRO LEU THR ARG SER ARG THR PRO ASP SER SEQRES 4 A 377 VAL PRO GLY ARG LEU GLN GLN ILE TYR TYR GLY GLN ARG SEQRES 5 A 377 ALA SER ALA GLY LEU ILE ILE SER GLU ALA THR ASN ILE SEQRES 6 A 377 SER PRO THR ALA ARG GLY TYR VAL TYR THR PRO GLY ILE SEQRES 7 A 377 TRP THR ASP ALA GLN GLU ALA GLY TRP LYS GLY VAL VAL SEQRES 8 A 377 GLU ALA VAL HIS ALA LYS GLY GLY ARG ILE ALA LEU GLN SEQRES 9 A 377 LEU TRP HIS VAL GLY ARG VAL SER HIS GLU LEU VAL GLN SEQRES 10 A 377 PRO ASP GLY GLN GLN PRO VAL ALA PRO SER ALA LEU LYS SEQRES 11 A 377 ALA GLU GLY ALA GLU CYS PHE VAL GLU PHE GLU ASP GLY SEQRES 12 A 377 THR ALA GLY LEU HIS PRO THR SER THR PRO ARG ALA LEU SEQRES 13 A 377 GLU THR ASP GLU ILE PRO GLY ILE VAL GLU ASP TYR ARG SEQRES 14 A 377 GLN ALA ALA GLN ARG ALA LYS ARG ALA GLY PHE ASP MET SEQRES 15 A 377 VAL GLU VAL HIS ALA ALA ALA ALA CYS LEU PRO ASN GLN SEQRES 16 A 377 PHE LEU ALA THR GLY THR ASN ARG ARG THR ASP GLN TYR SEQRES 17 A 377 GLY GLY SER ILE GLU ASN ARG ALA ARG PHE PRO LEU GLU SEQRES 18 A 377 VAL VAL ASP ALA VAL ALA GLU VAL PHE GLY PRO GLU ARG SEQRES 19 A 377 VAL GLY ILE ARG LEU THR PRO PHE LEU GLU LEU PHE GLY SEQRES 20 A 377 LEU THR ASP ASP GLU PRO GLU ALA MET ALA PHE TYR LEU SEQRES 21 A 377 ALA GLY GLU LEU ASP ARG ARG GLY LEU ALA TYR LEU HIS SEQRES 22 A 377 PHE ASN GLU PRO ASP TRP ILE GLY GLY ASP ILE THR TYR SEQRES 23 A 377 PRO GLU GLY PHE ARG GLU GLN MET ARG GLN ARG PHE LYS SEQRES 24 A 377 GLY GLY LEU ILE TYR CYS GLY ASN TYR ASP ALA GLY ARG SEQRES 25 A 377 ALA GLN ALA ARG LEU ASP ASP ASN THR ALA ASP ALA VAL SEQRES 26 A 377 ALA PHE GLY ARG PRO PHE ILE ALA ASN PRO ASP LEU PRO SEQRES 27 A 377 GLU ARG PHE ARG LEU GLY ALA ALA LEU ASN GLU PRO ASP SEQRES 28 A 377 PRO SER THR PHE TYR GLY GLY ALA GLU VAL GLY TYR THR SEQRES 29 A 377 ASP TYR PRO PHE LEU ASP ASN GLY HIS ASP ARG LEU GLY HET FMN A 400 31 HET TXD A 600 26 HETNAM FMN FLAVIN MONONUCLEOTIDE HETNAM TXD 1,4,5,6-TETRAHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE HETSYN FMN RIBOFLAVIN MONOPHOSPHATE FORMUL 2 FMN C17 H21 N4 O9 P FORMUL 3 TXD C21 H31 N7 O14 P2 FORMUL 4 HOH *174(H2 O) HELIX 1 1 GLY A 42 ARG A 52 1 11 HELIX 2 2 SER A 66 ARG A 70 5 5 HELIX 3 3 THR A 80 LYS A 97 1 18 HELIX 4 4 GLN A 117 GLN A 121 5 5 HELIX 5 5 GLU A 157 ASP A 159 5 3 HELIX 6 6 GLU A 160 GLY A 179 1 20 HELIX 7 7 CYS A 191 ALA A 198 1 8 HELIX 8 8 SER A 211 ALA A 216 1 6 HELIX 9 9 ALA A 216 GLY A 231 1 16 HELIX 10 10 GLU A 252 ARG A 267 1 16 HELIX 11 11 GLY A 289 PHE A 298 1 10 HELIX 12 12 ASP A 309 ASP A 319 1 11 HELIX 13 13 GLY A 328 ASN A 334 1 7 HELIX 14 14 ASP A 336 GLY A 344 1 9 HELIX 15 15 ASP A 351 PHE A 355 5 5 SHEET 1 A 2 LEU A 15 LEU A 17 0 SHEET 2 A 2 LEU A 20 LEU A 22 -1 O LEU A 20 N LEU A 17 SHEET 1 B 9 VAL A 26 MET A 28 0 SHEET 2 B 9 ILE A 58 ASN A 64 1 O ILE A 59 N MET A 28 SHEET 3 B 9 ILE A 101 TRP A 106 1 O GLN A 104 N THR A 63 SHEET 4 B 9 MET A 182 ALA A 187 1 O GLU A 184 N LEU A 103 SHEET 5 B 9 VAL A 235 LEU A 239 1 O ARG A 238 N VAL A 185 SHEET 6 B 9 TYR A 271 ASN A 275 1 O HIS A 273 N LEU A 239 SHEET 7 B 9 GLY A 301 CYS A 305 1 O ILE A 303 N PHE A 274 SHEET 8 B 9 ALA A 324 PHE A 327 1 O ALA A 326 N TYR A 304 SHEET 9 B 9 VAL A 26 MET A 28 1 N ILE A 27 O PHE A 327 SHEET 1 C 2 VAL A 124 ALA A 125 0 SHEET 2 C 2 ARG A 154 ALA A 155 1 O ARG A 154 N ALA A 125 SHEET 1 D 2 GLU A 135 GLU A 139 0 SHEET 2 D 2 ALA A 145 PRO A 149 -1 O GLY A 146 N VAL A 138 SITE 1 AC1 17 ALA A 29 PRO A 30 LEU A 31 THR A 32 SITE 2 AC1 17 ALA A 62 GLN A 104 HIS A 186 ARG A 238 SITE 3 AC1 17 ASN A 275 CYS A 305 ASN A 307 GLY A 328 SITE 4 AC1 17 ARG A 329 PRO A 330 TYR A 356 HOH A 408 SITE 5 AC1 17 HOH A 439 SITE 1 AC2 8 THR A 32 SER A 34 TYR A 72 PHE A 137 SITE 2 AC2 8 LEU A 147 TYR A 356 GLY A 357 HOH A 431 CRYST1 49.651 122.941 179.587 90.00 90.00 90.00 I 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020141 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008134 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005568 0.00000