HEADER HYDROLASE 02-APR-09 3GXH TITLE CRYSTAL STRUCTURE OF PUTATIVE PHOSPHATASE (DUF442) (YP_001181608.1) TITLE 2 FROM SHEWANELLA PUTREFACIENS CN-32 AT 1.40 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE PHOSPHATASE (DUF442); COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SHEWANELLA PUTREFACIENS CN-32; SOURCE 3 ORGANISM_TAXID: 319224; SOURCE 4 GENE: SPUTCN32_0073, YP_001181608.1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS YP_001181608.1, PUTATIVE PHOSPHATASE (DUF442), STRUCTURAL GENOMICS, KEYWDS 2 JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE KEYWDS 3 INITIATIVE, PSI-2, TYROSINE PHOSPHATASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 5 01-FEB-23 3GXH 1 REMARK SEQADV REVDAT 4 24-JUL-19 3GXH 1 REMARK LINK REVDAT 3 25-OCT-17 3GXH 1 REMARK REVDAT 2 13-JUL-11 3GXH 1 VERSN REVDAT 1 21-APR-09 3GXH 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF PUTATIVE PHOSPHATASE (DUF442) JRNL TITL 2 (YP_001181608.1) FROM SHEWANELLA PUTREFACIENS CN-32 AT 1.40 JRNL TITL 3 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0053 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.85 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 60434 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.160 REMARK 3 R VALUE (WORKING SET) : 0.159 REMARK 3 FREE R VALUE : 0.179 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3071 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.44 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3927 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.82 REMARK 3 BIN R VALUE (WORKING SET) : 0.2750 REMARK 3 BIN FREE R VALUE SET COUNT : 214 REMARK 3 BIN FREE R VALUE : 0.2920 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2404 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 35 REMARK 3 SOLVENT ATOMS : 343 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 15.95 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.26 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.06000 REMARK 3 B22 (A**2) : -1.01000 REMARK 3 B33 (A**2) : 1.07000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.058 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.058 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.038 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.061 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.967 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2663 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1728 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3664 ; 1.672 ; 1.958 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4295 ; 0.984 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 355 ; 5.819 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 136 ;36.790 ;26.691 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 445 ;12.421 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 4 ;11.882 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 395 ; 0.096 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3042 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 476 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1625 ; 1.628 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 640 ; 0.708 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2640 ; 2.728 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1038 ; 4.079 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1000 ; 6.269 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 26 A 178 4 REMARK 3 1 B 26 B 178 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 1774 ; 0.540 ; 0.500 REMARK 3 MEDIUM THERMAL 1 A (A**2): 1774 ; 1.490 ; 2.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 23 A 178 REMARK 3 ORIGIN FOR THE GROUP (A): 3.6809 12.1965 9.1826 REMARK 3 T TENSOR REMARK 3 T11: 0.0286 T22: 0.0017 REMARK 3 T33: 0.0210 T12: -0.0002 REMARK 3 T13: 0.0078 T23: 0.0047 REMARK 3 L TENSOR REMARK 3 L11: 0.7335 L22: 0.7546 REMARK 3 L33: 0.7308 L12: -0.0627 REMARK 3 L13: 0.1839 L23: -0.0951 REMARK 3 S TENSOR REMARK 3 S11: 0.0007 S12: 0.0275 S13: 0.0972 REMARK 3 S21: -0.0473 S22: -0.0103 S23: 0.0127 REMARK 3 S31: -0.1081 S32: 0.0204 S33: 0.0096 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 24 B 178 REMARK 3 ORIGIN FOR THE GROUP (A): 17.3015 -13.7484 10.1622 REMARK 3 T TENSOR REMARK 3 T11: 0.0106 T22: 0.0007 REMARK 3 T33: 0.0296 T12: 0.0008 REMARK 3 T13: 0.0152 T23: 0.0025 REMARK 3 L TENSOR REMARK 3 L11: 0.9328 L22: 0.7076 REMARK 3 L33: 0.4368 L12: -0.0186 REMARK 3 L13: -0.3377 L23: 0.1536 REMARK 3 S TENSOR REMARK 3 S11: -0.0107 S12: -0.0008 S13: -0.0792 REMARK 3 S21: -0.0531 S22: -0.0203 S23: -0.1094 REMARK 3 S31: 0.0183 S32: -0.0105 S33: 0.0311 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. A MET-INHIBITION PROTOCOL WAS USED FOR REMARK 3 SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE REMARK 3 OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.85 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 3. ATOM RECORDS CONTAIN RESIDUAL B FACTORS ONLY. REMARK 3 4. CL, SO4, EDO MODELED IS PRESENT IN CRYTALLIZATION OR CRYO REMARK 3 SOLUTION. REMARK 4 REMARK 4 3GXH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-APR-09. REMARK 100 THE DEPOSITION ID IS D_1000052428. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-FEB-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97828 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 MONOCHROMATOR (HORIZONTAL REMARK 200 FOCUSING) REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 60504 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 48.853 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 5.100 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.6500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.45 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.53 REMARK 200 R MERGE FOR SHELL (I) : 0.47000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.0000M (NH4)2SO4, 0.1M TRIS PH 8.5, REMARK 280 NANODROP, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.65150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 46.18200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 28.76400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 46.18200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.65150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 28.76400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: ANALYTICAL SIZE EXCLUSION CHROMATOGRAPHY INDICATES THAT THE REMARK 300 MONOMERIC FORM IS A SIGNIFICANT OLIGOMERIZATION STATE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2950 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14450 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -94.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 GLY B 0 REMARK 465 ASN B 23 REMARK 465 ILE B 24 REMARK 465 GLU B 25 REMARK 465 ASP B 157 REMARK 465 GLU B 158 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 23 CG OD1 ND2 REMARK 470 LYS A 74 CD CE NZ REMARK 470 ASP A 157 CG OD1 OD2 REMARK 470 LYS B 82 NZ REMARK 470 LYS B 117 CD CE NZ REMARK 470 LYS B 141 CE NZ REMARK 470 LEU B 159 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NE2 HIS A 178 O HOH B 242 4455 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 79 80.61 -152.93 REMARK 500 ASN A 100 65.84 -151.42 REMARK 500 CYS A 125 -137.67 -145.50 REMARK 500 TYR A 162 78.57 -118.34 REMARK 500 ASP B 79 72.76 -150.94 REMARK 500 ASN B 100 61.21 -154.99 REMARK 500 CYS B 125 -135.40 -143.52 REMARK 500 MSE B 152 45.86 -99.04 REMARK 500 MSE B 152 50.59 -99.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 5 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 6 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 7 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 8 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 4 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 9 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 10 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 396500 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT (RESIDUES 23-178) WAS EXPRESSED WITH A PURIFICATION REMARK 999 TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE REMARK 999 LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3GXH A 23 178 UNP A4Y1H6 A4Y1H6_SHEPC 23 178 DBREF 3GXH B 23 178 UNP A4Y1H6 A4Y1H6_SHEPC 23 178 SEQADV 3GXH GLY A 0 UNP A4Y1H6 EXPRESSION TAG SEQADV 3GXH GLY B 0 UNP A4Y1H6 EXPRESSION TAG SEQRES 1 A 157 GLY ASN ILE GLU SER ILE GLU ASN LEU GLN GLY ILE ARG SEQRES 2 A 157 ALA LEU GLN GLN GLN ALA PRO GLN LEU LEU SER SER GLY SEQRES 3 A 157 LEU PRO ASN GLU GLN GLN PHE SER LEU LEU LYS GLN ALA SEQRES 4 A 157 GLY VAL ASP VAL VAL ILE ASN LEU MSE PRO ASP SER SER SEQRES 5 A 157 LYS ASP ALA HIS PRO ASP GLU GLY LYS LEU VAL THR GLN SEQRES 6 A 157 ALA GLY MSE ASP TYR VAL TYR ILE PRO VAL ASP TRP GLN SEQRES 7 A 157 ASN PRO LYS VAL GLU ASP VAL GLU ALA PHE PHE ALA ALA SEQRES 8 A 157 MSE ASP GLN HIS LYS GLY LYS ASP VAL LEU VAL HIS CYS SEQRES 9 A 157 LEU ALA ASN TYR ARG ALA SER ALA PHE ALA TYR LEU TYR SEQRES 10 A 157 GLN LEU LYS GLN GLY GLN ASN PRO ASN MSE ALA GLN THR SEQRES 11 A 157 MSE THR PRO TRP ASN ASP GLU LEU ALA ILE TYR PRO LYS SEQRES 12 A 157 TRP GLN ALA LEU LEU THR GLU VAL SER ALA LYS TYR GLY SEQRES 13 A 157 HIS SEQRES 1 B 157 GLY ASN ILE GLU SER ILE GLU ASN LEU GLN GLY ILE ARG SEQRES 2 B 157 ALA LEU GLN GLN GLN ALA PRO GLN LEU LEU SER SER GLY SEQRES 3 B 157 LEU PRO ASN GLU GLN GLN PHE SER LEU LEU LYS GLN ALA SEQRES 4 B 157 GLY VAL ASP VAL VAL ILE ASN LEU MSE PRO ASP SER SER SEQRES 5 B 157 LYS ASP ALA HIS PRO ASP GLU GLY LYS LEU VAL THR GLN SEQRES 6 B 157 ALA GLY MSE ASP TYR VAL TYR ILE PRO VAL ASP TRP GLN SEQRES 7 B 157 ASN PRO LYS VAL GLU ASP VAL GLU ALA PHE PHE ALA ALA SEQRES 8 B 157 MSE ASP GLN HIS LYS GLY LYS ASP VAL LEU VAL HIS CYS SEQRES 9 B 157 LEU ALA ASN TYR ARG ALA SER ALA PHE ALA TYR LEU TYR SEQRES 10 B 157 GLN LEU LYS GLN GLY GLN ASN PRO ASN MSE ALA GLN THR SEQRES 11 B 157 MSE THR PRO TRP ASN ASP GLU LEU ALA ILE TYR PRO LYS SEQRES 12 B 157 TRP GLN ALA LEU LEU THR GLU VAL SER ALA LYS TYR GLY SEQRES 13 B 157 HIS MODRES 3GXH MSE A 69 MET SELENOMETHIONINE MODRES 3GXH MSE A 89 MET SELENOMETHIONINE MODRES 3GXH MSE A 113 MET SELENOMETHIONINE MODRES 3GXH MSE A 148 MET SELENOMETHIONINE MODRES 3GXH MSE A 152 MET SELENOMETHIONINE MODRES 3GXH MSE B 69 MET SELENOMETHIONINE MODRES 3GXH MSE B 89 MET SELENOMETHIONINE MODRES 3GXH MSE B 113 MET SELENOMETHIONINE MODRES 3GXH MSE B 148 MET SELENOMETHIONINE MODRES 3GXH MSE B 152 MET SELENOMETHIONINE HET MSE A 69 13 HET MSE A 89 8 HET MSE A 113 8 HET MSE A 148 8 HET MSE A 152 8 HET MSE B 69 8 HET MSE B 89 8 HET MSE B 113 8 HET MSE B 148 8 HET MSE B 152 8 HET CL A 1 1 HET SO4 A 5 5 HET SO4 A 6 5 HET SO4 A 7 5 HET EDO A 8 4 HET CL B 2 1 HET CL B 3 1 HET SO4 B 4 5 HET EDO B 9 4 HET EDO B 10 4 HETNAM MSE SELENOMETHIONINE HETNAM CL CHLORIDE ION HETNAM SO4 SULFATE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 3 CL 3(CL 1-) FORMUL 4 SO4 4(O4 S 2-) FORMUL 7 EDO 3(C2 H6 O2) FORMUL 13 HOH *343(H2 O) HELIX 1 1 ASN A 23 ASN A 29 1 7 HELIX 2 2 ASN A 50 ALA A 60 1 11 HELIX 3 3 ASP A 79 ALA A 87 1 9 HELIX 4 4 LYS A 102 HIS A 116 1 15 HELIX 5 5 ASN A 128 GLN A 142 1 15 HELIX 6 6 ASN A 147 MSE A 152 1 6 HELIX 7 7 THR A 153 ASN A 156 5 4 HELIX 8 8 GLU A 158 ILE A 161 5 4 HELIX 9 9 TYR A 162 TYR A 176 1 15 HELIX 10 10 SER B 26 GLN B 31 1 6 HELIX 11 11 ASN B 50 ALA B 60 1 11 HELIX 12 12 ASP B 79 ALA B 87 1 9 HELIX 13 13 LYS B 102 HIS B 116 1 15 HELIX 14 14 ASN B 128 GLN B 142 1 15 HELIX 15 15 ASN B 147 MSE B 152 1 6 HELIX 16 16 THR B 153 ASN B 156 5 4 HELIX 17 17 TYR B 162 GLY B 177 1 16 SHEET 1 A 5 GLN A 37 ALA A 40 0 SHEET 2 A 5 LEU A 43 SER A 46 -1 O SER A 45 N GLN A 37 SHEET 3 A 5 VAL A 121 HIS A 124 1 O VAL A 121 N LEU A 44 SHEET 4 A 5 VAL A 64 ASN A 67 1 N ILE A 66 O LEU A 122 SHEET 5 A 5 ASP A 90 TYR A 93 1 O VAL A 92 N ASN A 67 SHEET 1 B 5 GLN B 37 ALA B 40 0 SHEET 2 B 5 LEU B 43 SER B 46 -1 O LEU B 43 N GLN B 39 SHEET 3 B 5 VAL B 121 HIS B 124 1 O VAL B 121 N LEU B 44 SHEET 4 B 5 VAL B 64 ASN B 67 1 N ILE B 66 O LEU B 122 SHEET 5 B 5 ASP B 90 TYR B 93 1 O ASP B 90 N VAL B 65 LINK C LEU A 68 N MSE A 69 1555 1555 1.33 LINK C MSE A 69 N PRO A 70 1555 1555 1.33 LINK C GLY A 88 N MSE A 89 1555 1555 1.33 LINK C MSE A 89 N ASP A 90 1555 1555 1.33 LINK C ALA A 112 N MSE A 113 1555 1555 1.32 LINK C MSE A 113 N ASP A 114 1555 1555 1.33 LINK C ASN A 147 N MSE A 148 1555 1555 1.34 LINK C MSE A 148 N ALA A 149 1555 1555 1.32 LINK C THR A 151 N MSE A 152 1555 1555 1.32 LINK C MSE A 152 N THR A 153 1555 1555 1.33 LINK C LEU B 68 N MSE B 69 1555 1555 1.34 LINK C MSE B 69 N PRO B 70 1555 1555 1.35 LINK C GLY B 88 N MSE B 89 1555 1555 1.32 LINK C MSE B 89 N ASP B 90 1555 1555 1.34 LINK C ALA B 112 N MSE B 113 1555 1555 1.32 LINK C MSE B 113 N ASP B 114 1555 1555 1.32 LINK C ASN B 147 N MSE B 148 1555 1555 1.33 LINK C MSE B 148 N ALA B 149 1555 1555 1.33 LINK C THR B 151 N MSE B 152 1555 1555 1.33 LINK C MSE B 152 N ATHR B 153 1555 1555 1.33 LINK C MSE B 152 N BTHR B 153 1555 1555 1.33 SITE 1 AC1 4 ASN A 50 GLU A 51 ASN B 50 GLU B 51 SITE 1 AC2 10 CYS A 125 LEU A 126 ALA A 127 ASN A 128 SITE 2 AC2 10 TYR A 129 ARG A 130 HOH A 248 HIS B 178 SITE 3 AC2 10 HOH B 209 HOH B 302 SITE 1 AC3 7 ARG A 34 TYR A 129 HOH A 227 HOH A 250 SITE 2 AC3 7 CL B 2 HOH B 268 HOH B 388 SITE 1 AC4 5 ARG A 34 ALA A 35 HOH A 227 ARG B 34 SITE 2 AC4 5 HOH B 336 SITE 1 AC5 6 ARG A 34 LEU A 48 ASN A 50 HOH B 11 SITE 2 AC5 6 ASN B 50 HOH B 223 SITE 1 AC6 4 SO4 A 6 ARG A 34 ALA B 35 HOH B 238 SITE 1 AC7 2 SER B 73 LYS B 74 SITE 1 AC8 7 CYS B 125 LEU B 126 ALA B 127 ASN B 128 SITE 2 AC8 7 TYR B 129 ARG B 130 HOH B 220 SITE 1 AC9 6 ALA B 60 VAL B 62 ASP B 120 GLN B 166 SITE 2 AC9 6 HOH B 233 HOH B 309 SITE 1 BC1 5 PRO B 70 ASP B 71 SER B 72 TYR B 93 SITE 2 BC1 5 HOH B 366 CRYST1 57.303 57.528 92.364 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017451 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017383 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010827 0.00000