data_3GYD # _entry.id 3GYD # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3GYD pdb_00003gyd 10.2210/pdb3gyd/pdb RCSB RCSB052460 ? ? WWPDB D_1000052460 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id 390943 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 3GYD _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2009-04-03 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Crystal structure of cyclic nucleotide-binding domain (YP_546034.1) from Methylobacillus flagellatus KT at 1.79 A resolution' _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.entry_id 3GYD _cell.length_a 60.032 _cell.length_b 39.745 _cell.length_c 70.977 _cell.angle_alpha 90.000 _cell.angle_beta 101.850 _cell.angle_gamma 90.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 4 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3GYD _symmetry.Int_Tables_number 4 _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Cyclic nucleotide-binding domain' 21321.631 2 ? ? ? ? 2 non-polymer syn "ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE" 329.206 2 ? ? ? ? 3 non-polymer syn GLYCEROL 92.094 1 ? ? ? ? 4 water nat water 18.015 256 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'CNMP-BD protein' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)GSDKIHHHHHHENLYFQG(MSE)YPDLVHLGGADKYFEEILEIVNKIKLFGDFSNEEVRYLCSY(MSE)QCYAAP RDCQLLTEGDPGDYLLLILTGEVNVIKDIPNKGIQTIAKVGAGAIIGE(MSE)S(MSE)IDG(MSE)PRSASCVASLPTD FAVLSRDALYQLLAN(MSE)PKLGNKVLIRLLQLLTARFRESYDRILPKTLGELI ; _entity_poly.pdbx_seq_one_letter_code_can ;MGSDKIHHHHHHENLYFQGMYPDLVHLGGADKYFEEILEIVNKIKLFGDFSNEEVRYLCSYMQCYAAPRDCQLLTEGDPG DYLLLILTGEVNVIKDIPNKGIQTIAKVGAGAIIGEMSMIDGMPRSASCVASLPTDFAVLSRDALYQLLANMPKLGNKVL IRLLQLLTARFRESYDRILPKTLGELI ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier 390943 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 GLY n 1 3 SER n 1 4 ASP n 1 5 LYS n 1 6 ILE n 1 7 HIS n 1 8 HIS n 1 9 HIS n 1 10 HIS n 1 11 HIS n 1 12 HIS n 1 13 GLU n 1 14 ASN n 1 15 LEU n 1 16 TYR n 1 17 PHE n 1 18 GLN n 1 19 GLY n 1 20 MSE n 1 21 TYR n 1 22 PRO n 1 23 ASP n 1 24 LEU n 1 25 VAL n 1 26 HIS n 1 27 LEU n 1 28 GLY n 1 29 GLY n 1 30 ALA n 1 31 ASP n 1 32 LYS n 1 33 TYR n 1 34 PHE n 1 35 GLU n 1 36 GLU n 1 37 ILE n 1 38 LEU n 1 39 GLU n 1 40 ILE n 1 41 VAL n 1 42 ASN n 1 43 LYS n 1 44 ILE n 1 45 LYS n 1 46 LEU n 1 47 PHE n 1 48 GLY n 1 49 ASP n 1 50 PHE n 1 51 SER n 1 52 ASN n 1 53 GLU n 1 54 GLU n 1 55 VAL n 1 56 ARG n 1 57 TYR n 1 58 LEU n 1 59 CYS n 1 60 SER n 1 61 TYR n 1 62 MSE n 1 63 GLN n 1 64 CYS n 1 65 TYR n 1 66 ALA n 1 67 ALA n 1 68 PRO n 1 69 ARG n 1 70 ASP n 1 71 CYS n 1 72 GLN n 1 73 LEU n 1 74 LEU n 1 75 THR n 1 76 GLU n 1 77 GLY n 1 78 ASP n 1 79 PRO n 1 80 GLY n 1 81 ASP n 1 82 TYR n 1 83 LEU n 1 84 LEU n 1 85 LEU n 1 86 ILE n 1 87 LEU n 1 88 THR n 1 89 GLY n 1 90 GLU n 1 91 VAL n 1 92 ASN n 1 93 VAL n 1 94 ILE n 1 95 LYS n 1 96 ASP n 1 97 ILE n 1 98 PRO n 1 99 ASN n 1 100 LYS n 1 101 GLY n 1 102 ILE n 1 103 GLN n 1 104 THR n 1 105 ILE n 1 106 ALA n 1 107 LYS n 1 108 VAL n 1 109 GLY n 1 110 ALA n 1 111 GLY n 1 112 ALA n 1 113 ILE n 1 114 ILE n 1 115 GLY n 1 116 GLU n 1 117 MSE n 1 118 SER n 1 119 MSE n 1 120 ILE n 1 121 ASP n 1 122 GLY n 1 123 MSE n 1 124 PRO n 1 125 ARG n 1 126 SER n 1 127 ALA n 1 128 SER n 1 129 CYS n 1 130 VAL n 1 131 ALA n 1 132 SER n 1 133 LEU n 1 134 PRO n 1 135 THR n 1 136 ASP n 1 137 PHE n 1 138 ALA n 1 139 VAL n 1 140 LEU n 1 141 SER n 1 142 ARG n 1 143 ASP n 1 144 ALA n 1 145 LEU n 1 146 TYR n 1 147 GLN n 1 148 LEU n 1 149 LEU n 1 150 ALA n 1 151 ASN n 1 152 MSE n 1 153 PRO n 1 154 LYS n 1 155 LEU n 1 156 GLY n 1 157 ASN n 1 158 LYS n 1 159 VAL n 1 160 LEU n 1 161 ILE n 1 162 ARG n 1 163 LEU n 1 164 LEU n 1 165 GLN n 1 166 LEU n 1 167 LEU n 1 168 THR n 1 169 ALA n 1 170 ARG n 1 171 PHE n 1 172 ARG n 1 173 GLU n 1 174 SER n 1 175 TYR n 1 176 ASP n 1 177 ARG n 1 178 ILE n 1 179 LEU n 1 180 PRO n 1 181 LYS n 1 182 THR n 1 183 LEU n 1 184 GLY n 1 185 GLU n 1 186 LEU n 1 187 ILE n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'Mfla_1926, YP_546034.1' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'KT / DSM 6875' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Methylobacillus flagellatus KT' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 265072 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc 51484 _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain HK100 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name SpeedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q1GZZ4_METFK _struct_ref.pdbx_db_accession Q1GZZ4 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MYPDLVHLGGADKYFEEILEIVNKIKLFGDFSNEEVRYLCSYMQCYAAPRDCQLLTEGDPGDYLLLILTGEVNVIKDIPN KGIQTIAKVGAGAIIGEMSMIDGMPRSASCVASLPTDFAVLSRDALYQLLANMPKLGNKVLIRLLQLLTARFRESYDRIL PKTLGELI ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3GYD A 20 ? 187 ? Q1GZZ4 1 ? 168 ? 1 168 2 1 3GYD B 20 ? 187 ? Q1GZZ4 1 ? 168 ? 1 168 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3GYD MSE A 1 ? UNP Q1GZZ4 ? ? 'expression tag' -18 1 1 3GYD GLY A 2 ? UNP Q1GZZ4 ? ? 'expression tag' -17 2 1 3GYD SER A 3 ? UNP Q1GZZ4 ? ? 'expression tag' -16 3 1 3GYD ASP A 4 ? UNP Q1GZZ4 ? ? 'expression tag' -15 4 1 3GYD LYS A 5 ? UNP Q1GZZ4 ? ? 'expression tag' -14 5 1 3GYD ILE A 6 ? UNP Q1GZZ4 ? ? 'expression tag' -13 6 1 3GYD HIS A 7 ? UNP Q1GZZ4 ? ? 'expression tag' -12 7 1 3GYD HIS A 8 ? UNP Q1GZZ4 ? ? 'expression tag' -11 8 1 3GYD HIS A 9 ? UNP Q1GZZ4 ? ? 'expression tag' -10 9 1 3GYD HIS A 10 ? UNP Q1GZZ4 ? ? 'expression tag' -9 10 1 3GYD HIS A 11 ? UNP Q1GZZ4 ? ? 'expression tag' -8 11 1 3GYD HIS A 12 ? UNP Q1GZZ4 ? ? 'expression tag' -7 12 1 3GYD GLU A 13 ? UNP Q1GZZ4 ? ? 'expression tag' -6 13 1 3GYD ASN A 14 ? UNP Q1GZZ4 ? ? 'expression tag' -5 14 1 3GYD LEU A 15 ? UNP Q1GZZ4 ? ? 'expression tag' -4 15 1 3GYD TYR A 16 ? UNP Q1GZZ4 ? ? 'expression tag' -3 16 1 3GYD PHE A 17 ? UNP Q1GZZ4 ? ? 'expression tag' -2 17 1 3GYD GLN A 18 ? UNP Q1GZZ4 ? ? 'expression tag' -1 18 1 3GYD GLY A 19 ? UNP Q1GZZ4 ? ? 'expression tag' 0 19 2 3GYD MSE B 1 ? UNP Q1GZZ4 ? ? 'expression tag' -18 20 2 3GYD GLY B 2 ? UNP Q1GZZ4 ? ? 'expression tag' -17 21 2 3GYD SER B 3 ? UNP Q1GZZ4 ? ? 'expression tag' -16 22 2 3GYD ASP B 4 ? UNP Q1GZZ4 ? ? 'expression tag' -15 23 2 3GYD LYS B 5 ? UNP Q1GZZ4 ? ? 'expression tag' -14 24 2 3GYD ILE B 6 ? UNP Q1GZZ4 ? ? 'expression tag' -13 25 2 3GYD HIS B 7 ? UNP Q1GZZ4 ? ? 'expression tag' -12 26 2 3GYD HIS B 8 ? UNP Q1GZZ4 ? ? 'expression tag' -11 27 2 3GYD HIS B 9 ? UNP Q1GZZ4 ? ? 'expression tag' -10 28 2 3GYD HIS B 10 ? UNP Q1GZZ4 ? ? 'expression tag' -9 29 2 3GYD HIS B 11 ? UNP Q1GZZ4 ? ? 'expression tag' -8 30 2 3GYD HIS B 12 ? UNP Q1GZZ4 ? ? 'expression tag' -7 31 2 3GYD GLU B 13 ? UNP Q1GZZ4 ? ? 'expression tag' -6 32 2 3GYD ASN B 14 ? UNP Q1GZZ4 ? ? 'expression tag' -5 33 2 3GYD LEU B 15 ? UNP Q1GZZ4 ? ? 'expression tag' -4 34 2 3GYD TYR B 16 ? UNP Q1GZZ4 ? ? 'expression tag' -3 35 2 3GYD PHE B 17 ? UNP Q1GZZ4 ? ? 'expression tag' -2 36 2 3GYD GLN B 18 ? UNP Q1GZZ4 ? ? 'expression tag' -1 37 2 3GYD GLY B 19 ? UNP Q1GZZ4 ? ? 'expression tag' 0 38 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CMP non-polymer . "ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE" 'CYCLIC AMP; CAMP' 'C10 H12 N5 O6 P' 329.206 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 3GYD # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 1.94 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 36.71 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 10.0 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details 'NANODROP, 36.0% PEG 3000, 0.1M CHES pH 10.0, VAPOR DIFFUSION, SITTING DROP, temperature 277K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 325 mm CCD' _diffrn_detector.details 'Flat collimating mirror, toroid focusing mirror' _diffrn_detector.pdbx_collection_date 2009-01-18 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Double crystal' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.91837 1.0 2 0.97956 1.0 3 0.97944 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline BL9-2 _diffrn_source.type 'SSRL BEAMLINE BL9-2' _diffrn_source.pdbx_wavelength_list '0.91837, 0.97956, 0.97944' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.entry_id 3GYD _reflns.d_resolution_high 1.79 _reflns.d_resolution_low 29.374 _reflns.number_obs 30961 _reflns.pdbx_Rmerge_I_obs 0.090 _reflns.pdbx_netI_over_sigmaI 6.144 _reflns.pdbx_Rsym_value 0.090 _reflns.pdbx_redundancy 3.000 _reflns.percent_possible_obs 99.100 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.79 1.84 ? 4786 ? 0.559 1.1 0.559 ? 2.30 ? 2066 90.80 1 1 1.84 1.89 ? 6128 ? 0.547 1.2 0.547 ? 2.70 ? 2230 98.00 2 1 1.89 1.94 ? 6675 ? 0.473 1.4 0.473 ? 3.10 ? 2141 100.00 3 1 1.94 2.00 ? 6615 ? 0.366 1.8 0.366 ? 3.10 ? 2120 100.00 4 1 2.00 2.07 ? 6358 ? 0.271 2.5 0.271 ? 3.10 ? 2034 100.00 5 1 2.07 2.14 ? 6230 ? 0.221 3.0 0.221 ? 3.10 ? 2008 100.00 6 1 2.14 2.22 ? 5947 ? 0.194 3.5 0.194 ? 3.10 ? 1896 100.00 7 1 2.22 2.31 ? 5829 ? 0.160 4.1 0.160 ? 3.10 ? 1864 100.00 8 1 2.31 2.41 ? 5475 ? 0.132 5.0 0.132 ? 3.10 ? 1749 100.00 9 1 2.41 2.53 ? 5285 ? 0.126 5.3 0.126 ? 3.10 ? 1694 100.00 10 1 2.53 2.67 ? 5099 ? 0.108 6.3 0.108 ? 3.10 ? 1626 100.00 11 1 2.67 2.83 ? 4787 ? 0.092 7.4 0.092 ? 3.10 ? 1528 100.00 12 1 2.83 3.03 ? 4519 ? 0.083 7.9 0.083 ? 3.10 ? 1444 100.00 13 1 3.03 3.27 ? 4173 ? 0.074 8.6 0.074 ? 3.10 ? 1342 99.80 14 1 3.27 3.58 ? 3815 ? 0.066 9.4 0.066 ? 3.10 ? 1237 99.90 15 1 3.58 4.00 ? 3531 ? 0.054 11.1 0.054 ? 3.10 ? 1135 99.80 16 1 4.00 4.62 ? 3050 ? 0.048 13.0 0.048 ? 3.10 ? 982 99.60 17 1 4.62 5.66 ? 2603 ? 0.048 12.9 0.048 ? 3.10 ? 838 99.40 18 1 5.66 8.01 ? 1997 ? 0.056 10.8 0.056 ? 3.00 ? 659 98.90 19 1 8.01 29.374 ? 1070 ? 0.041 15.2 0.041 ? 2.90 ? 368 96.00 20 1 # _refine.entry_id 3GYD _refine.ls_d_res_high 1.790 _refine.ls_d_res_low 29.374 _refine.pdbx_ls_sigma_F 0.00 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 98.820 _refine.ls_number_reflns_obs 30921 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2. ATOM RECORDS CONTAIN RESIDUAL B FACTORS ONLY. 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 4. AN ADENOSINE-3'-5'-CYCLIC-MONOPHOSPHATE (CMP) IS MODELED INTO THE LIGAND BINDING SITE ON EACH MONOMER BASED ON THE PRESENCE OF CLEAR AND CONCLUSIVE ELECTRON DENSITY. ; _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.170 _refine.ls_R_factor_R_work 0.168 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.212 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.000 _refine.ls_number_reflns_R_free 1549 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 25.095 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] -1.370 _refine.aniso_B[2][2] 1.370 _refine.aniso_B[3][3] -0.070 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] -0.190 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.964 _refine.correlation_coeff_Fo_to_Fc_free 0.945 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R 0.135 _refine.pdbx_overall_ESU_R_Free 0.128 _refine.overall_SU_ML 0.092 _refine.overall_SU_B 5.717 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 59.54 _refine.B_iso_min 12.77 _refine.occupancy_max 1.00 _refine.occupancy_min 0.25 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2795 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 50 _refine_hist.number_atoms_solvent 256 _refine_hist.number_atoms_total 3101 _refine_hist.d_res_high 1.790 _refine_hist.d_res_low 29.374 # loop_ _refine_ls_restr.type _refine_ls_restr.pdbx_refine_id _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 'X-RAY DIFFRACTION' 3028 0.016 0.022 ? ? r_bond_other_d 'X-RAY DIFFRACTION' 2023 0.001 0.020 ? ? r_angle_refined_deg 'X-RAY DIFFRACTION' 4128 1.569 2.015 ? ? r_angle_other_deg 'X-RAY DIFFRACTION' 4964 0.990 3.000 ? ? r_dihedral_angle_1_deg 'X-RAY DIFFRACTION' 381 5.856 5.000 ? ? r_dihedral_angle_2_deg 'X-RAY DIFFRACTION' 127 27.901 24.252 ? ? r_dihedral_angle_3_deg 'X-RAY DIFFRACTION' 524 13.913 15.000 ? ? r_dihedral_angle_4_deg 'X-RAY DIFFRACTION' 16 17.166 15.000 ? ? r_chiral_restr 'X-RAY DIFFRACTION' 464 0.104 0.200 ? ? r_gen_planes_refined 'X-RAY DIFFRACTION' 3377 0.006 0.020 ? ? r_gen_planes_other 'X-RAY DIFFRACTION' 593 0.001 0.020 ? ? r_nbd_refined 'X-RAY DIFFRACTION' 643 0.211 0.200 ? ? r_nbd_other 'X-RAY DIFFRACTION' 2173 0.195 0.200 ? ? r_nbtor_refined 'X-RAY DIFFRACTION' 1461 0.179 0.200 ? ? r_nbtor_other 'X-RAY DIFFRACTION' 1555 0.086 0.200 ? ? r_xyhbond_nbd_refined 'X-RAY DIFFRACTION' 232 0.172 0.200 ? ? r_symmetry_vdw_refined 'X-RAY DIFFRACTION' 26 0.182 0.200 ? ? r_symmetry_vdw_other 'X-RAY DIFFRACTION' 49 0.249 0.200 ? ? r_symmetry_hbond_refined 'X-RAY DIFFRACTION' 17 0.150 0.200 ? ? r_mcbond_it 'X-RAY DIFFRACTION' 2027 1.374 2.000 ? ? r_mcbond_other 'X-RAY DIFFRACTION' 754 0.345 2.000 ? ? r_mcangle_it 'X-RAY DIFFRACTION' 3008 1.967 3.000 ? ? r_scbond_it 'X-RAY DIFFRACTION' 1284 1.415 2.000 ? ? r_scangle_it 'X-RAY DIFFRACTION' 1120 2.044 3.000 ? ? # loop_ _refine_ls_restr_ncs.pdbx_refine_id _refine_ls_restr_ncs.pdbx_ens_id _refine_ls_restr_ncs.dom_id _refine_ls_restr_ncs.pdbx_type _refine_ls_restr_ncs.pdbx_auth_asym_id _refine_ls_restr_ncs.pdbx_number _refine_ls_restr_ncs.rms_dev_position _refine_ls_restr_ncs.weight_position _refine_ls_restr_ncs.pdbx_ordinal _refine_ls_restr_ncs.ncs_model_details _refine_ls_restr_ncs.rms_dev_B_iso _refine_ls_restr_ncs.weight_B_iso 'X-RAY DIFFRACTION' 1 1 'LOOSE POSITIONAL' A 1978 0.380 5.000 1 ? ? ? 'X-RAY DIFFRACTION' 1 1 'LOOSE THERMAL' A 1978 1.640 10.000 2 ? ? ? # _refine_ls_shell.d_res_high 1.790 _refine_ls_shell.d_res_low 1.837 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 89.050 _refine_ls_shell.number_reflns_R_work 1923 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.240 _refine_ls_shell.R_factor_R_free 0.278 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 119 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 2042 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _struct_ncs_dom.pdbx_ens_id _struct_ncs_dom.id _struct_ncs_dom.details 1 1 A 1 2 B # loop_ _struct_ncs_dom_lim.pdbx_ens_id _struct_ncs_dom_lim.dom_id _struct_ncs_dom_lim.pdbx_component_id _struct_ncs_dom_lim.pdbx_refine_code _struct_ncs_dom_lim.beg_auth_asym_id _struct_ncs_dom_lim.beg_auth_seq_id _struct_ncs_dom_lim.end_auth_asym_id _struct_ncs_dom_lim.end_auth_seq_id _struct_ncs_dom_lim.selection_details _struct_ncs_dom_lim.beg_label_asym_id _struct_ncs_dom_lim.beg_label_comp_id _struct_ncs_dom_lim.beg_label_seq_id _struct_ncs_dom_lim.beg_label_alt_id _struct_ncs_dom_lim.end_label_asym_id _struct_ncs_dom_lim.end_label_comp_id _struct_ncs_dom_lim.end_label_seq_id _struct_ncs_dom_lim.end_label_alt_id 1 1 1 6 A 5 A 164 ? . . . . . . . . 1 2 1 6 B 5 B 164 ? . . . . . . . . # _struct_ncs_ens.id 1 _struct_ncs_ens.details ? # _struct.entry_id 3GYD _struct.title 'Crystal structure of a cyclic nucleotide-binding domain (mfla_1926) from methylobacillus flagellatus kt at 1.79 A resolution' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text ;Nucleotide binding protein, structural genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-2, dna binding protein ; _struct_keywords.pdbx_keywords 'DNA BINDING PROTEIN' _struct_keywords.entry_id 3GYD # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 4 ? G N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 HIS A 12 ? PHE A 17 ? HIS A -7 PHE A -2 1 ? 6 HELX_P HELX_P2 2 MSE A 20 ? LEU A 24 ? MSE A 1 LEU A 5 5 ? 5 HELX_P HELX_P3 3 TYR A 33 ? ASN A 42 ? TYR A 14 ASN A 23 1 ? 10 HELX_P HELX_P4 4 SER A 51 ? SER A 60 ? SER A 32 SER A 41 1 ? 10 HELX_P HELX_P5 5 GLY A 115 ? GLY A 122 ? GLY A 96 GLY A 103 1 ? 8 HELX_P HELX_P6 6 ARG A 142 ? MSE A 152 ? ARG A 123 MSE A 133 1 ? 11 HELX_P HELX_P7 7 MSE A 152 ? LEU A 179 ? MSE A 133 LEU A 160 1 ? 28 HELX_P HELX_P8 8 PRO A 180 ? THR A 182 ? PRO A 161 THR A 163 5 ? 3 HELX_P HELX_P9 9 HIS B 8 ? TYR B 21 ? HIS B -11 TYR B 2 1 ? 14 HELX_P HELX_P10 10 TYR B 33 ? ASN B 42 ? TYR B 14 ASN B 23 1 ? 10 HELX_P HELX_P11 11 SER B 51 ? TYR B 61 ? SER B 32 TYR B 42 1 ? 11 HELX_P HELX_P12 12 GLY B 115 ? GLY B 122 ? GLY B 96 GLY B 103 1 ? 8 HELX_P HELX_P13 13 ARG B 142 ? MSE B 152 ? ARG B 123 MSE B 133 1 ? 11 HELX_P HELX_P14 14 MSE B 152 ? LEU B 179 ? MSE B 133 LEU B 160 1 ? 28 HELX_P HELX_P15 15 PRO B 180 ? THR B 182 ? PRO B 161 THR B 163 5 ? 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A GLY 19 C ? ? ? 1_555 A MSE 20 N ? ? A GLY 0 A MSE 1 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale2 covale both ? A MSE 20 C ? ? ? 1_555 A TYR 21 N ? ? A MSE 1 A TYR 2 1_555 ? ? ? ? ? ? ? 1.346 ? ? covale3 covale both ? A TYR 61 C ? ? ? 1_555 A MSE 62 N ? ? A TYR 42 A MSE 43 1_555 ? ? ? ? ? ? ? 1.337 ? ? covale4 covale both ? A MSE 62 C ? ? ? 1_555 A GLN 63 N ? ? A MSE 43 A GLN 44 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale5 covale both ? A GLU 116 C ? ? ? 1_555 A MSE 117 N ? ? A GLU 97 A MSE 98 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale6 covale both ? A MSE 117 C ? ? ? 1_555 A SER 118 N ? ? A MSE 98 A SER 99 1_555 ? ? ? ? ? ? ? 1.338 ? ? covale7 covale both ? A SER 118 C ? ? ? 1_555 A MSE 119 N ? ? A SER 99 A MSE 100 1_555 ? ? ? ? ? ? ? 1.318 ? ? covale8 covale both ? A MSE 119 C ? ? ? 1_555 A ILE 120 N ? ? A MSE 100 A ILE 101 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale9 covale both ? A GLY 122 C ? ? ? 1_555 A MSE 123 N A ? A GLY 103 A MSE 104 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale10 covale both ? A GLY 122 C ? ? ? 1_555 A MSE 123 N B ? A GLY 103 A MSE 104 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale11 covale both ? A MSE 123 C A ? ? 1_555 A PRO 124 N ? ? A MSE 104 A PRO 105 1_555 ? ? ? ? ? ? ? 1.339 ? ? covale12 covale both ? A MSE 123 C B ? ? 1_555 A PRO 124 N ? ? A MSE 104 A PRO 105 1_555 ? ? ? ? ? ? ? 1.344 ? ? covale13 covale both ? A ASN 151 C ? ? ? 1_555 A MSE 152 N A ? A ASN 132 A MSE 133 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale14 covale both ? A ASN 151 C ? ? ? 1_555 A MSE 152 N B ? A ASN 132 A MSE 133 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale15 covale both ? A MSE 152 C A ? ? 1_555 A PRO 153 N ? ? A MSE 133 A PRO 134 1_555 ? ? ? ? ? ? ? 1.345 ? ? covale16 covale both ? A MSE 152 C B ? ? 1_555 A PRO 153 N ? ? A MSE 133 A PRO 134 1_555 ? ? ? ? ? ? ? 1.341 ? ? covale17 covale both ? B GLY 19 C ? ? ? 1_555 B MSE 20 N ? ? B GLY 0 B MSE 1 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale18 covale both ? B MSE 20 C ? ? ? 1_555 B TYR 21 N ? ? B MSE 1 B TYR 2 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale19 covale both ? B TYR 61 C ? ? ? 1_555 B MSE 62 N ? ? B TYR 42 B MSE 43 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale20 covale both ? B MSE 62 C ? ? ? 1_555 B GLN 63 N A ? B MSE 43 B GLN 44 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale21 covale both ? B MSE 62 C ? ? ? 1_555 B GLN 63 N B ? B MSE 43 B GLN 44 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale22 covale both ? B GLU 116 C ? ? ? 1_555 B MSE 117 N ? ? B GLU 97 B MSE 98 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale23 covale both ? B MSE 117 C ? ? ? 1_555 B SER 118 N ? ? B MSE 98 B SER 99 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale24 covale both ? B SER 118 C ? ? ? 1_555 B MSE 119 N ? ? B SER 99 B MSE 100 1_555 ? ? ? ? ? ? ? 1.337 ? ? covale25 covale both ? B MSE 119 C ? ? ? 1_555 B ILE 120 N ? ? B MSE 100 B ILE 101 1_555 ? ? ? ? ? ? ? 1.316 ? ? covale26 covale both ? B GLY 122 C ? ? ? 1_555 B MSE 123 N A ? B GLY 103 B MSE 104 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale27 covale both ? B GLY 122 C ? ? ? 1_555 B MSE 123 N B ? B GLY 103 B MSE 104 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale28 covale both ? B MSE 123 C A ? ? 1_555 B PRO 124 N ? ? B MSE 104 B PRO 105 1_555 ? ? ? ? ? ? ? 1.347 ? ? covale29 covale both ? B MSE 123 C B ? ? 1_555 B PRO 124 N ? ? B MSE 104 B PRO 105 1_555 ? ? ? ? ? ? ? 1.347 ? ? covale30 covale both ? B ASN 151 C ? ? ? 1_555 B MSE 152 N ? ? B ASN 132 B MSE 133 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale31 covale both ? B MSE 152 C ? ? ? 1_555 B PRO 153 N ? ? B MSE 133 B PRO 134 1_555 ? ? ? ? ? ? ? 1.337 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 4 ? C ? 5 ? D ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel C 4 5 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel D 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 25 ? GLY A 29 ? VAL A 6 GLY A 10 A 2 GLN A 63 ? ALA A 67 ? GLN A 44 ALA A 48 A 3 SER A 128 ? SER A 141 ? SER A 109 SER A 122 A 4 TYR A 82 ? ILE A 97 ? TYR A 63 ILE A 78 A 5 GLY A 101 ? GLY A 109 ? GLY A 82 GLY A 90 B 1 GLN A 72 ? LEU A 74 ? GLN A 53 LEU A 55 B 2 SER A 128 ? SER A 141 ? SER A 109 SER A 122 B 3 TYR A 82 ? ILE A 97 ? TYR A 63 ILE A 78 B 4 ILE A 113 ? ILE A 114 ? ILE A 94 ILE A 95 C 1 VAL B 25 ? GLY B 29 ? VAL B 6 GLY B 10 C 2 GLN B 63 ? ALA B 67 ? GLN B 44 ALA B 48 C 3 THR B 135 ? SER B 141 ? THR B 116 SER B 122 C 4 TYR B 82 ? THR B 88 ? TYR B 63 THR B 69 C 5 ILE B 113 ? ILE B 114 ? ILE B 94 ILE B 95 D 1 CYS B 71 ? LEU B 74 ? CYS B 52 LEU B 55 D 2 SER B 128 ? ALA B 131 ? SER B 109 ALA B 112 D 3 GLU B 90 ? ILE B 97 ? GLU B 71 ILE B 78 D 4 GLY B 101 ? GLY B 109 ? GLY B 82 GLY B 90 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N GLY A 28 ? N GLY A 9 O CYS A 64 ? O CYS A 45 A 2 3 N ALA A 67 ? N ALA A 48 O THR A 135 ? O THR A 116 A 3 4 O SER A 128 ? O SER A 109 N ILE A 94 ? N ILE A 75 A 4 5 N ILE A 97 ? N ILE A 78 O GLY A 101 ? O GLY A 82 B 1 2 N LEU A 74 ? N LEU A 55 O CYS A 129 ? O CYS A 110 B 2 3 O SER A 128 ? O SER A 109 N ILE A 94 ? N ILE A 75 B 3 4 N LEU A 84 ? N LEU A 65 O ILE A 114 ? O ILE A 95 C 1 2 N LEU B 27 ? N LEU B 8 O CYS B 64 ? O CYS B 45 C 2 3 N ALA B 67 ? N ALA B 48 O THR B 135 ? O THR B 116 C 3 4 O ASP B 136 ? O ASP B 117 N LEU B 87 ? N LEU B 68 C 4 5 N LEU B 84 ? N LEU B 65 O ILE B 114 ? O ILE B 95 D 1 2 N CYS B 71 ? N CYS B 52 O ALA B 131 ? O ALA B 112 D 2 3 O SER B 128 ? O SER B 109 N ILE B 94 ? N ILE B 75 D 3 4 N VAL B 93 ? N VAL B 74 O ALA B 106 ? O ALA B 87 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A CMP 300 ? 14 'BINDING SITE FOR RESIDUE CMP A 300' AC2 Software B CMP 300 ? 15 'BINDING SITE FOR RESIDUE CMP B 300' AC3 Software B GOL 169 ? 7 'BINDING SITE FOR RESIDUE GOL B 169' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 14 VAL A 93 ? VAL A 74 . ? 1_555 ? 2 AC1 14 ALA A 106 ? ALA A 87 . ? 1_555 ? 3 AC1 14 ILE A 114 ? ILE A 95 . ? 1_555 ? 4 AC1 14 GLY A 115 ? GLY A 96 . ? 1_555 ? 5 AC1 14 GLU A 116 ? GLU A 97 . ? 1_555 ? 6 AC1 14 MSE A 117 ? MSE A 98 . ? 1_555 ? 7 AC1 14 SER A 118 ? SER A 99 . ? 1_555 ? 8 AC1 14 ARG A 125 ? ARG A 106 . ? 1_555 ? 9 AC1 14 SER A 126 ? SER A 107 . ? 1_555 ? 10 AC1 14 ALA A 127 ? ALA A 108 . ? 1_555 ? 11 AC1 14 CYS A 129 ? CYS A 110 . ? 1_555 ? 12 AC1 14 ARG A 170 ? ARG A 151 . ? 1_555 ? 13 AC1 14 SER A 174 ? SER A 155 . ? 1_555 ? 14 AC1 14 HOH F . ? HOH A 323 . ? 1_555 ? 15 AC2 15 TYR A 175 ? TYR A 156 . ? 1_555 ? 16 AC2 15 ILE B 105 ? ILE B 86 . ? 1_555 ? 17 AC2 15 ALA B 106 ? ALA B 87 . ? 1_555 ? 18 AC2 15 ILE B 114 ? ILE B 95 . ? 1_555 ? 19 AC2 15 GLY B 115 ? GLY B 96 . ? 1_555 ? 20 AC2 15 GLU B 116 ? GLU B 97 . ? 1_555 ? 21 AC2 15 MSE B 117 ? MSE B 98 . ? 1_555 ? 22 AC2 15 SER B 118 ? SER B 99 . ? 1_555 ? 23 AC2 15 ARG B 125 ? ARG B 106 . ? 1_555 ? 24 AC2 15 SER B 126 ? SER B 107 . ? 1_555 ? 25 AC2 15 ALA B 127 ? ALA B 108 . ? 1_555 ? 26 AC2 15 CYS B 129 ? CYS B 110 . ? 1_555 ? 27 AC2 15 ARG B 170 ? ARG B 151 . ? 1_555 ? 28 AC2 15 SER B 174 ? SER B 155 . ? 1_555 ? 29 AC2 15 HOH G . ? HOH B 182 . ? 1_555 ? 30 AC3 7 LYS B 43 ? LYS B 24 . ? 1_555 ? 31 AC3 7 ARG B 162 ? ARG B 143 . ? 1_555 ? 32 AC3 7 GLN B 165 ? GLN B 146 . ? 1_555 ? 33 AC3 7 LEU B 166 ? LEU B 147 . ? 1_555 ? 34 AC3 7 HOH G . ? HOH B 176 . ? 1_555 ? 35 AC3 7 HOH G . ? HOH B 234 . ? 1_555 ? 36 AC3 7 HOH G . ? HOH B 271 . ? 1_555 ? # _atom_sites.entry_id 3GYD _atom_sites.fract_transf_matrix[1][1] 0.016658 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.003494 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.025160 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014396 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O P S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 -18 ? ? ? A . n A 1 2 GLY 2 -17 ? ? ? A . n A 1 3 SER 3 -16 ? ? ? A . n A 1 4 ASP 4 -15 ? ? ? A . n A 1 5 LYS 5 -14 ? ? ? A . n A 1 6 ILE 6 -13 ? ? ? A . n A 1 7 HIS 7 -12 ? ? ? A . n A 1 8 HIS 8 -11 ? ? ? A . n A 1 9 HIS 9 -10 ? ? ? A . n A 1 10 HIS 10 -9 -9 HIS HIS A . n A 1 11 HIS 11 -8 -8 HIS HIS A . n A 1 12 HIS 12 -7 -7 HIS HIS A . n A 1 13 GLU 13 -6 -6 GLU GLU A . n A 1 14 ASN 14 -5 -5 ASN ASN A . n A 1 15 LEU 15 -4 -4 LEU LEU A . n A 1 16 TYR 16 -3 -3 TYR TYR A . n A 1 17 PHE 17 -2 -2 PHE PHE A . n A 1 18 GLN 18 -1 -1 GLN GLN A . n A 1 19 GLY 19 0 0 GLY GLY A . n A 1 20 MSE 20 1 1 MSE MSE A . n A 1 21 TYR 21 2 2 TYR TYR A . n A 1 22 PRO 22 3 3 PRO PRO A . n A 1 23 ASP 23 4 4 ASP ASP A . n A 1 24 LEU 24 5 5 LEU LEU A . n A 1 25 VAL 25 6 6 VAL VAL A . n A 1 26 HIS 26 7 7 HIS HIS A . n A 1 27 LEU 27 8 8 LEU LEU A . n A 1 28 GLY 28 9 9 GLY GLY A . n A 1 29 GLY 29 10 10 GLY GLY A . n A 1 30 ALA 30 11 11 ALA ALA A . n A 1 31 ASP 31 12 12 ASP ASP A . n A 1 32 LYS 32 13 13 LYS LYS A . n A 1 33 TYR 33 14 14 TYR TYR A . n A 1 34 PHE 34 15 15 PHE PHE A . n A 1 35 GLU 35 16 16 GLU GLU A . n A 1 36 GLU 36 17 17 GLU GLU A . n A 1 37 ILE 37 18 18 ILE ILE A . n A 1 38 LEU 38 19 19 LEU LEU A . n A 1 39 GLU 39 20 20 GLU GLU A . n A 1 40 ILE 40 21 21 ILE ILE A . n A 1 41 VAL 41 22 22 VAL VAL A . n A 1 42 ASN 42 23 23 ASN ASN A . n A 1 43 LYS 43 24 24 LYS LYS A . n A 1 44 ILE 44 25 25 ILE ILE A . n A 1 45 LYS 45 26 26 LYS LYS A . n A 1 46 LEU 46 27 27 LEU LEU A . n A 1 47 PHE 47 28 28 PHE PHE A . n A 1 48 GLY 48 29 29 GLY GLY A . n A 1 49 ASP 49 30 30 ASP ASP A . n A 1 50 PHE 50 31 31 PHE PHE A . n A 1 51 SER 51 32 32 SER SER A . n A 1 52 ASN 52 33 33 ASN ASN A . n A 1 53 GLU 53 34 34 GLU GLU A . n A 1 54 GLU 54 35 35 GLU GLU A . n A 1 55 VAL 55 36 36 VAL VAL A . n A 1 56 ARG 56 37 37 ARG ARG A . n A 1 57 TYR 57 38 38 TYR TYR A . n A 1 58 LEU 58 39 39 LEU LEU A . n A 1 59 CYS 59 40 40 CYS CYS A . n A 1 60 SER 60 41 41 SER SER A . n A 1 61 TYR 61 42 42 TYR TYR A . n A 1 62 MSE 62 43 43 MSE MSE A . n A 1 63 GLN 63 44 44 GLN GLN A . n A 1 64 CYS 64 45 45 CYS CYS A . n A 1 65 TYR 65 46 46 TYR TYR A . n A 1 66 ALA 66 47 47 ALA ALA A . n A 1 67 ALA 67 48 48 ALA ALA A . n A 1 68 PRO 68 49 49 PRO PRO A . n A 1 69 ARG 69 50 50 ARG ARG A . n A 1 70 ASP 70 51 51 ASP ASP A . n A 1 71 CYS 71 52 52 CYS CYS A . n A 1 72 GLN 72 53 53 GLN GLN A . n A 1 73 LEU 73 54 54 LEU LEU A . n A 1 74 LEU 74 55 55 LEU LEU A . n A 1 75 THR 75 56 56 THR THR A . n A 1 76 GLU 76 57 57 GLU GLU A . n A 1 77 GLY 77 58 58 GLY GLY A . n A 1 78 ASP 78 59 59 ASP ASP A . n A 1 79 PRO 79 60 60 PRO PRO A . n A 1 80 GLY 80 61 61 GLY GLY A . n A 1 81 ASP 81 62 62 ASP ASP A . n A 1 82 TYR 82 63 63 TYR TYR A . n A 1 83 LEU 83 64 64 LEU LEU A . n A 1 84 LEU 84 65 65 LEU LEU A . n A 1 85 LEU 85 66 66 LEU LEU A . n A 1 86 ILE 86 67 67 ILE ILE A . n A 1 87 LEU 87 68 68 LEU LEU A . n A 1 88 THR 88 69 69 THR THR A . n A 1 89 GLY 89 70 70 GLY GLY A . n A 1 90 GLU 90 71 71 GLU GLU A . n A 1 91 VAL 91 72 72 VAL VAL A . n A 1 92 ASN 92 73 73 ASN ASN A . n A 1 93 VAL 93 74 74 VAL VAL A . n A 1 94 ILE 94 75 75 ILE ILE A . n A 1 95 LYS 95 76 76 LYS LYS A . n A 1 96 ASP 96 77 77 ASP ASP A . n A 1 97 ILE 97 78 78 ILE ILE A . n A 1 98 PRO 98 79 79 PRO PRO A . n A 1 99 ASN 99 80 80 ASN ASN A . n A 1 100 LYS 100 81 81 LYS LYS A . n A 1 101 GLY 101 82 82 GLY GLY A . n A 1 102 ILE 102 83 83 ILE ILE A . n A 1 103 GLN 103 84 84 GLN GLN A . n A 1 104 THR 104 85 85 THR THR A . n A 1 105 ILE 105 86 86 ILE ILE A . n A 1 106 ALA 106 87 87 ALA ALA A . n A 1 107 LYS 107 88 88 LYS LYS A . n A 1 108 VAL 108 89 89 VAL VAL A . n A 1 109 GLY 109 90 90 GLY GLY A . n A 1 110 ALA 110 91 91 ALA ALA A . n A 1 111 GLY 111 92 92 GLY GLY A . n A 1 112 ALA 112 93 93 ALA ALA A . n A 1 113 ILE 113 94 94 ILE ILE A . n A 1 114 ILE 114 95 95 ILE ILE A . n A 1 115 GLY 115 96 96 GLY GLY A . n A 1 116 GLU 116 97 97 GLU GLU A . n A 1 117 MSE 117 98 98 MSE MSE A . n A 1 118 SER 118 99 99 SER SER A . n A 1 119 MSE 119 100 100 MSE MSE A . n A 1 120 ILE 120 101 101 ILE ILE A . n A 1 121 ASP 121 102 102 ASP ASP A . n A 1 122 GLY 122 103 103 GLY GLY A . n A 1 123 MSE 123 104 104 MSE MSE A . n A 1 124 PRO 124 105 105 PRO PRO A . n A 1 125 ARG 125 106 106 ARG ARG A . n A 1 126 SER 126 107 107 SER SER A . n A 1 127 ALA 127 108 108 ALA ALA A . n A 1 128 SER 128 109 109 SER SER A . n A 1 129 CYS 129 110 110 CYS CYS A . n A 1 130 VAL 130 111 111 VAL VAL A . n A 1 131 ALA 131 112 112 ALA ALA A . n A 1 132 SER 132 113 113 SER SER A . n A 1 133 LEU 133 114 114 LEU LEU A . n A 1 134 PRO 134 115 115 PRO PRO A . n A 1 135 THR 135 116 116 THR THR A . n A 1 136 ASP 136 117 117 ASP ASP A . n A 1 137 PHE 137 118 118 PHE PHE A . n A 1 138 ALA 138 119 119 ALA ALA A . n A 1 139 VAL 139 120 120 VAL VAL A . n A 1 140 LEU 140 121 121 LEU LEU A . n A 1 141 SER 141 122 122 SER SER A . n A 1 142 ARG 142 123 123 ARG ARG A . n A 1 143 ASP 143 124 124 ASP ASP A . n A 1 144 ALA 144 125 125 ALA ALA A . n A 1 145 LEU 145 126 126 LEU LEU A . n A 1 146 TYR 146 127 127 TYR TYR A . n A 1 147 GLN 147 128 128 GLN GLN A . n A 1 148 LEU 148 129 129 LEU LEU A . n A 1 149 LEU 149 130 130 LEU LEU A . n A 1 150 ALA 150 131 131 ALA ALA A . n A 1 151 ASN 151 132 132 ASN ASN A . n A 1 152 MSE 152 133 133 MSE MSE A . n A 1 153 PRO 153 134 134 PRO PRO A . n A 1 154 LYS 154 135 135 LYS LYS A . n A 1 155 LEU 155 136 136 LEU LEU A . n A 1 156 GLY 156 137 137 GLY GLY A . n A 1 157 ASN 157 138 138 ASN ASN A . n A 1 158 LYS 158 139 139 LYS LYS A . n A 1 159 VAL 159 140 140 VAL VAL A . n A 1 160 LEU 160 141 141 LEU LEU A . n A 1 161 ILE 161 142 142 ILE ILE A . n A 1 162 ARG 162 143 143 ARG ARG A . n A 1 163 LEU 163 144 144 LEU LEU A . n A 1 164 LEU 164 145 145 LEU LEU A . n A 1 165 GLN 165 146 146 GLN GLN A . n A 1 166 LEU 166 147 147 LEU LEU A . n A 1 167 LEU 167 148 148 LEU LEU A . n A 1 168 THR 168 149 149 THR THR A . n A 1 169 ALA 169 150 150 ALA ALA A . n A 1 170 ARG 170 151 151 ARG ARG A . n A 1 171 PHE 171 152 152 PHE PHE A . n A 1 172 ARG 172 153 153 ARG ARG A . n A 1 173 GLU 173 154 154 GLU GLU A . n A 1 174 SER 174 155 155 SER SER A . n A 1 175 TYR 175 156 156 TYR TYR A . n A 1 176 ASP 176 157 157 ASP ASP A . n A 1 177 ARG 177 158 158 ARG ARG A . n A 1 178 ILE 178 159 159 ILE ILE A . n A 1 179 LEU 179 160 160 LEU LEU A . n A 1 180 PRO 180 161 161 PRO PRO A . n A 1 181 LYS 181 162 162 LYS LYS A . n A 1 182 THR 182 163 163 THR THR A . n A 1 183 LEU 183 164 164 LEU LEU A . n A 1 184 GLY 184 165 165 GLY GLY A . n A 1 185 GLU 185 166 166 GLU GLU A . n A 1 186 LEU 186 167 167 LEU LEU A . n A 1 187 ILE 187 168 168 ILE ILE A . n B 1 1 MSE 1 -18 ? ? ? B . n B 1 2 GLY 2 -17 ? ? ? B . n B 1 3 SER 3 -16 ? ? ? B . n B 1 4 ASP 4 -15 ? ? ? B . n B 1 5 LYS 5 -14 ? ? ? B . n B 1 6 ILE 6 -13 ? ? ? B . n B 1 7 HIS 7 -12 ? ? ? B . n B 1 8 HIS 8 -11 -11 HIS HIS B . n B 1 9 HIS 9 -10 -10 HIS HIS B . n B 1 10 HIS 10 -9 -9 HIS HIS B . n B 1 11 HIS 11 -8 -8 HIS HIS B . n B 1 12 HIS 12 -7 -7 HIS HIS B . n B 1 13 GLU 13 -6 -6 GLU GLU B . n B 1 14 ASN 14 -5 -5 ASN ASN B . n B 1 15 LEU 15 -4 -4 LEU LEU B . n B 1 16 TYR 16 -3 -3 TYR TYR B . n B 1 17 PHE 17 -2 -2 PHE PHE B . n B 1 18 GLN 18 -1 -1 GLN GLN B . n B 1 19 GLY 19 0 0 GLY GLY B . n B 1 20 MSE 20 1 1 MSE MSE B . n B 1 21 TYR 21 2 2 TYR TYR B . n B 1 22 PRO 22 3 3 PRO PRO B . n B 1 23 ASP 23 4 4 ASP ASP B . n B 1 24 LEU 24 5 5 LEU LEU B . n B 1 25 VAL 25 6 6 VAL VAL B . n B 1 26 HIS 26 7 7 HIS HIS B . n B 1 27 LEU 27 8 8 LEU LEU B . n B 1 28 GLY 28 9 9 GLY GLY B . n B 1 29 GLY 29 10 10 GLY GLY B . n B 1 30 ALA 30 11 11 ALA ALA B . n B 1 31 ASP 31 12 12 ASP ASP B . n B 1 32 LYS 32 13 13 LYS LYS B . n B 1 33 TYR 33 14 14 TYR TYR B . n B 1 34 PHE 34 15 15 PHE PHE B . n B 1 35 GLU 35 16 16 GLU GLU B . n B 1 36 GLU 36 17 17 GLU GLU B . n B 1 37 ILE 37 18 18 ILE ILE B . n B 1 38 LEU 38 19 19 LEU LEU B . n B 1 39 GLU 39 20 20 GLU GLU B . n B 1 40 ILE 40 21 21 ILE ILE B . n B 1 41 VAL 41 22 22 VAL VAL B . n B 1 42 ASN 42 23 23 ASN ASN B . n B 1 43 LYS 43 24 24 LYS LYS B . n B 1 44 ILE 44 25 25 ILE ILE B . n B 1 45 LYS 45 26 26 LYS LYS B . n B 1 46 LEU 46 27 27 LEU LEU B . n B 1 47 PHE 47 28 28 PHE PHE B . n B 1 48 GLY 48 29 29 GLY GLY B . n B 1 49 ASP 49 30 30 ASP ASP B . n B 1 50 PHE 50 31 31 PHE PHE B . n B 1 51 SER 51 32 32 SER SER B . n B 1 52 ASN 52 33 33 ASN ASN B . n B 1 53 GLU 53 34 34 GLU GLU B . n B 1 54 GLU 54 35 35 GLU GLU B . n B 1 55 VAL 55 36 36 VAL VAL B . n B 1 56 ARG 56 37 37 ARG ARG B . n B 1 57 TYR 57 38 38 TYR TYR B . n B 1 58 LEU 58 39 39 LEU LEU B . n B 1 59 CYS 59 40 40 CYS CYS B . n B 1 60 SER 60 41 41 SER SER B . n B 1 61 TYR 61 42 42 TYR TYR B . n B 1 62 MSE 62 43 43 MSE MSE B . n B 1 63 GLN 63 44 44 GLN GLN B . n B 1 64 CYS 64 45 45 CYS CYS B . n B 1 65 TYR 65 46 46 TYR TYR B . n B 1 66 ALA 66 47 47 ALA ALA B . n B 1 67 ALA 67 48 48 ALA ALA B . n B 1 68 PRO 68 49 49 PRO PRO B . n B 1 69 ARG 69 50 50 ARG ARG B . n B 1 70 ASP 70 51 51 ASP ASP B . n B 1 71 CYS 71 52 52 CYS CYS B . n B 1 72 GLN 72 53 53 GLN GLN B . n B 1 73 LEU 73 54 54 LEU LEU B . n B 1 74 LEU 74 55 55 LEU LEU B . n B 1 75 THR 75 56 56 THR THR B . n B 1 76 GLU 76 57 57 GLU GLU B . n B 1 77 GLY 77 58 58 GLY GLY B . n B 1 78 ASP 78 59 59 ASP ASP B . n B 1 79 PRO 79 60 60 PRO PRO B . n B 1 80 GLY 80 61 61 GLY GLY B . n B 1 81 ASP 81 62 62 ASP ASP B . n B 1 82 TYR 82 63 63 TYR TYR B . n B 1 83 LEU 83 64 64 LEU LEU B . n B 1 84 LEU 84 65 65 LEU LEU B . n B 1 85 LEU 85 66 66 LEU LEU B . n B 1 86 ILE 86 67 67 ILE ILE B . n B 1 87 LEU 87 68 68 LEU LEU B . n B 1 88 THR 88 69 69 THR THR B . n B 1 89 GLY 89 70 70 GLY GLY B . n B 1 90 GLU 90 71 71 GLU GLU B . n B 1 91 VAL 91 72 72 VAL VAL B . n B 1 92 ASN 92 73 73 ASN ASN B . n B 1 93 VAL 93 74 74 VAL VAL B . n B 1 94 ILE 94 75 75 ILE ILE B . n B 1 95 LYS 95 76 76 LYS LYS B . n B 1 96 ASP 96 77 77 ASP ASP B . n B 1 97 ILE 97 78 78 ILE ILE B . n B 1 98 PRO 98 79 79 PRO PRO B . n B 1 99 ASN 99 80 80 ASN ASN B . n B 1 100 LYS 100 81 81 LYS LYS B . n B 1 101 GLY 101 82 82 GLY GLY B . n B 1 102 ILE 102 83 83 ILE ILE B . n B 1 103 GLN 103 84 84 GLN GLN B . n B 1 104 THR 104 85 85 THR THR B . n B 1 105 ILE 105 86 86 ILE ILE B . n B 1 106 ALA 106 87 87 ALA ALA B . n B 1 107 LYS 107 88 88 LYS LYS B . n B 1 108 VAL 108 89 89 VAL VAL B . n B 1 109 GLY 109 90 90 GLY GLY B . n B 1 110 ALA 110 91 91 ALA ALA B . n B 1 111 GLY 111 92 92 GLY GLY B . n B 1 112 ALA 112 93 93 ALA ALA B . n B 1 113 ILE 113 94 94 ILE ILE B . n B 1 114 ILE 114 95 95 ILE ILE B . n B 1 115 GLY 115 96 96 GLY GLY B . n B 1 116 GLU 116 97 97 GLU GLU B . n B 1 117 MSE 117 98 98 MSE MSE B . n B 1 118 SER 118 99 99 SER SER B . n B 1 119 MSE 119 100 100 MSE MSE B . n B 1 120 ILE 120 101 101 ILE ILE B . n B 1 121 ASP 121 102 102 ASP ASP B . n B 1 122 GLY 122 103 103 GLY GLY B . n B 1 123 MSE 123 104 104 MSE MSE B . n B 1 124 PRO 124 105 105 PRO PRO B . n B 1 125 ARG 125 106 106 ARG ARG B . n B 1 126 SER 126 107 107 SER SER B . n B 1 127 ALA 127 108 108 ALA ALA B . n B 1 128 SER 128 109 109 SER SER B . n B 1 129 CYS 129 110 110 CYS CYS B . n B 1 130 VAL 130 111 111 VAL VAL B . n B 1 131 ALA 131 112 112 ALA ALA B . n B 1 132 SER 132 113 113 SER SER B . n B 1 133 LEU 133 114 114 LEU LEU B . n B 1 134 PRO 134 115 115 PRO PRO B . n B 1 135 THR 135 116 116 THR THR B . n B 1 136 ASP 136 117 117 ASP ASP B . n B 1 137 PHE 137 118 118 PHE PHE B . n B 1 138 ALA 138 119 119 ALA ALA B . n B 1 139 VAL 139 120 120 VAL VAL B . n B 1 140 LEU 140 121 121 LEU LEU B . n B 1 141 SER 141 122 122 SER SER B . n B 1 142 ARG 142 123 123 ARG ARG B . n B 1 143 ASP 143 124 124 ASP ASP B . n B 1 144 ALA 144 125 125 ALA ALA B . n B 1 145 LEU 145 126 126 LEU LEU B . n B 1 146 TYR 146 127 127 TYR TYR B . n B 1 147 GLN 147 128 128 GLN GLN B . n B 1 148 LEU 148 129 129 LEU LEU B . n B 1 149 LEU 149 130 130 LEU LEU B . n B 1 150 ALA 150 131 131 ALA ALA B . n B 1 151 ASN 151 132 132 ASN ASN B . n B 1 152 MSE 152 133 133 MSE MSE B . n B 1 153 PRO 153 134 134 PRO PRO B . n B 1 154 LYS 154 135 135 LYS LYS B . n B 1 155 LEU 155 136 136 LEU LEU B . n B 1 156 GLY 156 137 137 GLY GLY B . n B 1 157 ASN 157 138 138 ASN ASN B . n B 1 158 LYS 158 139 139 LYS LYS B . n B 1 159 VAL 159 140 140 VAL VAL B . n B 1 160 LEU 160 141 141 LEU LEU B . n B 1 161 ILE 161 142 142 ILE ILE B . n B 1 162 ARG 162 143 143 ARG ARG B . n B 1 163 LEU 163 144 144 LEU LEU B . n B 1 164 LEU 164 145 145 LEU LEU B . n B 1 165 GLN 165 146 146 GLN GLN B . n B 1 166 LEU 166 147 147 LEU LEU B . n B 1 167 LEU 167 148 148 LEU LEU B . n B 1 168 THR 168 149 149 THR THR B . n B 1 169 ALA 169 150 150 ALA ALA B . n B 1 170 ARG 170 151 151 ARG ARG B . n B 1 171 PHE 171 152 152 PHE PHE B . n B 1 172 ARG 172 153 153 ARG ARG B . n B 1 173 GLU 173 154 154 GLU GLU B . n B 1 174 SER 174 155 155 SER SER B . n B 1 175 TYR 175 156 156 TYR TYR B . n B 1 176 ASP 176 157 157 ASP ASP B . n B 1 177 ARG 177 158 158 ARG ARG B . n B 1 178 ILE 178 159 159 ILE ILE B . n B 1 179 LEU 179 160 160 LEU LEU B . n B 1 180 PRO 180 161 161 PRO PRO B . n B 1 181 LYS 181 162 162 LYS LYS B . n B 1 182 THR 182 163 163 THR THR B . n B 1 183 LEU 183 164 164 LEU LEU B . n B 1 184 GLY 184 165 165 GLY GLY B . n B 1 185 GLU 185 166 166 GLU GLU B . n B 1 186 LEU 186 167 167 LEU LEU B . n B 1 187 ILE 187 168 168 ILE ILE B . n # _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CMP 1 300 300 CMP CMP A . D 2 CMP 1 300 300 CMP CMP B . E 3 GOL 1 169 1 GOL GOL B . F 4 HOH 1 169 169 HOH HOH A . F 4 HOH 2 170 2 HOH HOH A . F 4 HOH 3 171 3 HOH HOH A . F 4 HOH 4 172 172 HOH HOH A . F 4 HOH 5 174 174 HOH HOH A . F 4 HOH 6 177 7 HOH HOH A . F 4 HOH 7 178 178 HOH HOH A . F 4 HOH 8 179 8 HOH HOH A . F 4 HOH 9 180 180 HOH HOH A . F 4 HOH 10 181 9 HOH HOH A . F 4 HOH 11 182 182 HOH HOH A . F 4 HOH 12 183 183 HOH HOH A . F 4 HOH 13 184 10 HOH HOH A . F 4 HOH 14 185 11 HOH HOH A . F 4 HOH 15 186 12 HOH HOH A . F 4 HOH 16 187 187 HOH HOH A . F 4 HOH 17 188 188 HOH HOH A . F 4 HOH 18 189 189 HOH HOH A . F 4 HOH 19 190 190 HOH HOH A . F 4 HOH 20 191 191 HOH HOH A . F 4 HOH 21 192 192 HOH HOH A . F 4 HOH 22 193 13 HOH HOH A . F 4 HOH 23 194 14 HOH HOH A . F 4 HOH 24 195 15 HOH HOH A . F 4 HOH 25 196 16 HOH HOH A . F 4 HOH 26 197 17 HOH HOH A . F 4 HOH 27 198 18 HOH HOH A . F 4 HOH 28 199 199 HOH HOH A . F 4 HOH 29 200 200 HOH HOH A . F 4 HOH 30 201 201 HOH HOH A . F 4 HOH 31 202 202 HOH HOH A . F 4 HOH 32 203 203 HOH HOH A . F 4 HOH 33 204 204 HOH HOH A . F 4 HOH 34 205 19 HOH HOH A . F 4 HOH 35 206 20 HOH HOH A . F 4 HOH 36 207 207 HOH HOH A . F 4 HOH 37 209 22 HOH HOH A . F 4 HOH 38 213 213 HOH HOH A . F 4 HOH 39 214 214 HOH HOH A . F 4 HOH 40 215 215 HOH HOH A . F 4 HOH 41 216 216 HOH HOH A . F 4 HOH 42 217 217 HOH HOH A . F 4 HOH 43 218 218 HOH HOH A . F 4 HOH 44 222 222 HOH HOH A . F 4 HOH 45 224 224 HOH HOH A . F 4 HOH 46 225 225 HOH HOH A . F 4 HOH 47 226 226 HOH HOH A . F 4 HOH 48 227 227 HOH HOH A . F 4 HOH 49 228 228 HOH HOH A . F 4 HOH 50 229 229 HOH HOH A . F 4 HOH 51 231 231 HOH HOH A . F 4 HOH 52 232 31 HOH HOH A . F 4 HOH 53 233 32 HOH HOH A . F 4 HOH 54 236 35 HOH HOH A . F 4 HOH 55 237 237 HOH HOH A . F 4 HOH 56 238 36 HOH HOH A . F 4 HOH 57 239 37 HOH HOH A . F 4 HOH 58 241 39 HOH HOH A . F 4 HOH 59 242 242 HOH HOH A . F 4 HOH 60 243 40 HOH HOH A . F 4 HOH 61 244 244 HOH HOH A . F 4 HOH 62 245 245 HOH HOH A . F 4 HOH 63 246 246 HOH HOH A . F 4 HOH 64 247 247 HOH HOH A . F 4 HOH 65 248 248 HOH HOH A . F 4 HOH 66 249 249 HOH HOH A . F 4 HOH 67 250 250 HOH HOH A . F 4 HOH 68 251 41 HOH HOH A . F 4 HOH 69 252 252 HOH HOH A . F 4 HOH 70 253 253 HOH HOH A . F 4 HOH 71 256 256 HOH HOH A . F 4 HOH 72 257 257 HOH HOH A . F 4 HOH 73 260 46 HOH HOH A . F 4 HOH 74 262 48 HOH HOH A . F 4 HOH 75 263 49 HOH HOH A . F 4 HOH 76 265 51 HOH HOH A . F 4 HOH 77 267 53 HOH HOH A . F 4 HOH 78 272 58 HOH HOH A . F 4 HOH 79 273 59 HOH HOH A . F 4 HOH 80 274 60 HOH HOH A . F 4 HOH 81 275 61 HOH HOH A . F 4 HOH 82 276 62 HOH HOH A . F 4 HOH 83 277 63 HOH HOH A . F 4 HOH 84 281 67 HOH HOH A . F 4 HOH 85 285 71 HOH HOH A . F 4 HOH 86 286 72 HOH HOH A . F 4 HOH 87 288 74 HOH HOH A . F 4 HOH 88 289 75 HOH HOH A . F 4 HOH 89 290 76 HOH HOH A . F 4 HOH 90 291 77 HOH HOH A . F 4 HOH 91 292 78 HOH HOH A . F 4 HOH 92 294 80 HOH HOH A . F 4 HOH 93 297 83 HOH HOH A . F 4 HOH 94 302 87 HOH HOH A . F 4 HOH 95 304 89 HOH HOH A . F 4 HOH 96 305 90 HOH HOH A . F 4 HOH 97 309 94 HOH HOH A . F 4 HOH 98 312 97 HOH HOH A . F 4 HOH 99 313 98 HOH HOH A . F 4 HOH 100 318 103 HOH HOH A . F 4 HOH 101 320 105 HOH HOH A . F 4 HOH 102 323 108 HOH HOH A . F 4 HOH 103 324 109 HOH HOH A . F 4 HOH 104 325 110 HOH HOH A . F 4 HOH 105 326 111 HOH HOH A . F 4 HOH 106 327 112 HOH HOH A . F 4 HOH 107 330 115 HOH HOH A . F 4 HOH 108 332 117 HOH HOH A . F 4 HOH 109 335 120 HOH HOH A . F 4 HOH 110 337 122 HOH HOH A . F 4 HOH 111 339 124 HOH HOH A . F 4 HOH 112 340 125 HOH HOH A . F 4 HOH 113 342 127 HOH HOH A . F 4 HOH 114 343 128 HOH HOH A . F 4 HOH 115 346 131 HOH HOH A . F 4 HOH 116 348 133 HOH HOH A . F 4 HOH 117 349 134 HOH HOH A . F 4 HOH 118 351 136 HOH HOH A . F 4 HOH 119 354 139 HOH HOH A . F 4 HOH 120 355 140 HOH HOH A . F 4 HOH 121 359 144 HOH HOH A . F 4 HOH 122 362 147 HOH HOH A . F 4 HOH 123 363 148 HOH HOH A . F 4 HOH 124 364 149 HOH HOH A . F 4 HOH 125 365 150 HOH HOH A . F 4 HOH 126 367 152 HOH HOH A . F 4 HOH 127 368 153 HOH HOH A . F 4 HOH 128 371 156 HOH HOH A . F 4 HOH 129 372 157 HOH HOH A . F 4 HOH 130 374 159 HOH HOH A . F 4 HOH 131 375 160 HOH HOH A . F 4 HOH 132 376 161 HOH HOH A . F 4 HOH 133 377 162 HOH HOH A . F 4 HOH 134 378 163 HOH HOH A . F 4 HOH 135 379 164 HOH HOH A . F 4 HOH 136 380 165 HOH HOH A . F 4 HOH 137 381 166 HOH HOH A . F 4 HOH 138 382 167 HOH HOH A . G 4 HOH 1 170 170 HOH HOH B . G 4 HOH 2 171 171 HOH HOH B . G 4 HOH 3 173 4 HOH HOH B . G 4 HOH 4 174 173 HOH HOH B . G 4 HOH 5 175 5 HOH HOH B . G 4 HOH 6 176 6 HOH HOH B . G 4 HOH 7 177 177 HOH HOH B . G 4 HOH 8 178 175 HOH HOH B . G 4 HOH 9 179 179 HOH HOH B . G 4 HOH 10 180 176 HOH HOH B . G 4 HOH 11 181 181 HOH HOH B . G 4 HOH 12 182 208 HOH HOH B . G 4 HOH 13 183 210 HOH HOH B . G 4 HOH 14 184 184 HOH HOH B . G 4 HOH 15 185 185 HOH HOH B . G 4 HOH 16 186 186 HOH HOH B . G 4 HOH 17 187 211 HOH HOH B . G 4 HOH 18 188 212 HOH HOH B . G 4 HOH 19 189 219 HOH HOH B . G 4 HOH 20 190 220 HOH HOH B . G 4 HOH 21 191 221 HOH HOH B . G 4 HOH 22 192 223 HOH HOH B . G 4 HOH 23 193 193 HOH HOH B . G 4 HOH 24 194 194 HOH HOH B . G 4 HOH 25 195 195 HOH HOH B . G 4 HOH 26 196 196 HOH HOH B . G 4 HOH 27 197 197 HOH HOH B . G 4 HOH 28 198 198 HOH HOH B . G 4 HOH 29 199 230 HOH HOH B . G 4 HOH 30 200 234 HOH HOH B . G 4 HOH 31 201 235 HOH HOH B . G 4 HOH 32 202 240 HOH HOH B . G 4 HOH 33 203 254 HOH HOH B . G 4 HOH 34 204 255 HOH HOH B . G 4 HOH 35 205 205 HOH HOH B . G 4 HOH 36 206 206 HOH HOH B . G 4 HOH 37 208 21 HOH HOH B . G 4 HOH 38 209 209 HOH HOH B . G 4 HOH 39 210 23 HOH HOH B . G 4 HOH 40 211 24 HOH HOH B . G 4 HOH 41 212 25 HOH HOH B . G 4 HOH 42 219 26 HOH HOH B . G 4 HOH 43 220 27 HOH HOH B . G 4 HOH 44 221 28 HOH HOH B . G 4 HOH 45 223 29 HOH HOH B . G 4 HOH 46 230 30 HOH HOH B . G 4 HOH 47 232 232 HOH HOH B . G 4 HOH 48 233 233 HOH HOH B . G 4 HOH 49 234 33 HOH HOH B . G 4 HOH 50 235 34 HOH HOH B . G 4 HOH 51 236 236 HOH HOH B . G 4 HOH 52 238 238 HOH HOH B . G 4 HOH 53 239 239 HOH HOH B . G 4 HOH 54 240 38 HOH HOH B . G 4 HOH 55 241 241 HOH HOH B . G 4 HOH 56 243 243 HOH HOH B . G 4 HOH 57 251 251 HOH HOH B . G 4 HOH 58 254 42 HOH HOH B . G 4 HOH 59 255 43 HOH HOH B . G 4 HOH 60 258 44 HOH HOH B . G 4 HOH 61 259 45 HOH HOH B . G 4 HOH 62 261 47 HOH HOH B . G 4 HOH 63 264 50 HOH HOH B . G 4 HOH 64 266 52 HOH HOH B . G 4 HOH 65 268 54 HOH HOH B . G 4 HOH 66 269 55 HOH HOH B . G 4 HOH 67 270 56 HOH HOH B . G 4 HOH 68 271 57 HOH HOH B . G 4 HOH 69 278 64 HOH HOH B . G 4 HOH 70 279 65 HOH HOH B . G 4 HOH 71 280 66 HOH HOH B . G 4 HOH 72 282 68 HOH HOH B . G 4 HOH 73 283 69 HOH HOH B . G 4 HOH 74 284 70 HOH HOH B . G 4 HOH 75 287 73 HOH HOH B . G 4 HOH 76 293 79 HOH HOH B . G 4 HOH 77 295 81 HOH HOH B . G 4 HOH 78 296 82 HOH HOH B . G 4 HOH 79 298 84 HOH HOH B . G 4 HOH 80 299 85 HOH HOH B . G 4 HOH 81 301 86 HOH HOH B . G 4 HOH 82 303 88 HOH HOH B . G 4 HOH 83 306 91 HOH HOH B . G 4 HOH 84 307 92 HOH HOH B . G 4 HOH 85 308 93 HOH HOH B . G 4 HOH 86 310 95 HOH HOH B . G 4 HOH 87 311 96 HOH HOH B . G 4 HOH 88 314 99 HOH HOH B . G 4 HOH 89 315 100 HOH HOH B . G 4 HOH 90 316 101 HOH HOH B . G 4 HOH 91 317 102 HOH HOH B . G 4 HOH 92 319 104 HOH HOH B . G 4 HOH 93 321 106 HOH HOH B . G 4 HOH 94 322 107 HOH HOH B . G 4 HOH 95 328 113 HOH HOH B . G 4 HOH 96 329 114 HOH HOH B . G 4 HOH 97 331 116 HOH HOH B . G 4 HOH 98 333 118 HOH HOH B . G 4 HOH 99 334 119 HOH HOH B . G 4 HOH 100 336 121 HOH HOH B . G 4 HOH 101 338 123 HOH HOH B . G 4 HOH 102 341 126 HOH HOH B . G 4 HOH 103 344 129 HOH HOH B . G 4 HOH 104 345 130 HOH HOH B . G 4 HOH 105 347 132 HOH HOH B . G 4 HOH 106 350 135 HOH HOH B . G 4 HOH 107 352 137 HOH HOH B . G 4 HOH 108 353 138 HOH HOH B . G 4 HOH 109 356 141 HOH HOH B . G 4 HOH 110 357 142 HOH HOH B . G 4 HOH 111 358 143 HOH HOH B . G 4 HOH 112 360 145 HOH HOH B . G 4 HOH 113 361 146 HOH HOH B . G 4 HOH 114 366 151 HOH HOH B . G 4 HOH 115 369 154 HOH HOH B . G 4 HOH 116 370 155 HOH HOH B . G 4 HOH 117 373 158 HOH HOH B . G 4 HOH 118 383 168 HOH HOH B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 20 A MSE 1 ? MET SELENOMETHIONINE 2 A MSE 62 A MSE 43 ? MET SELENOMETHIONINE 3 A MSE 117 A MSE 98 ? MET SELENOMETHIONINE 4 A MSE 119 A MSE 100 ? MET SELENOMETHIONINE 5 A MSE 123 A MSE 104 ? MET SELENOMETHIONINE 6 A MSE 152 A MSE 133 ? MET SELENOMETHIONINE 7 B MSE 20 B MSE 1 ? MET SELENOMETHIONINE 8 B MSE 62 B MSE 43 ? MET SELENOMETHIONINE 9 B MSE 117 B MSE 98 ? MET SELENOMETHIONINE 10 B MSE 119 B MSE 100 ? MET SELENOMETHIONINE 11 B MSE 123 B MSE 104 ? MET SELENOMETHIONINE 12 B MSE 152 B MSE 133 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 5180 ? 1 MORE -39.4 ? 1 'SSA (A^2)' 14810 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-04-21 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-11-01 4 'Structure model' 1 3 2019-07-24 5 'Structure model' 1 4 2023-02-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Refinement description' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' 7 5 'Structure model' 'Database references' 8 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' software 3 4 'Structure model' struct_conn 4 5 'Structure model' database_2 5 5 'Structure model' struct_ref_seq_dif 6 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.name' 3 4 'Structure model' '_software.classification' 4 4 'Structure model' '_software.contact_author' 5 4 'Structure model' '_software.contact_author_email' 6 4 'Structure model' '_software.language' 7 4 'Structure model' '_software.location' 8 4 'Structure model' '_software.name' 9 4 'Structure model' '_software.type' 10 4 'Structure model' '_software.version' 11 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 12 5 'Structure model' '_database_2.pdbx_DOI' 13 5 'Structure model' '_database_2.pdbx_database_accession' 14 5 'Structure model' '_struct_ref_seq_dif.details' 15 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 16 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 17 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 31.9687 10.5016 19.4490 -0.0250 -0.0788 -0.0622 -0.0012 0.0113 0.0128 2.8614 0.3213 0.6051 -0.2214 0.1732 0.0408 0.0366 -0.0589 0.0223 0.1348 -0.0168 -0.0543 -0.0204 -0.0039 0.0510 'X-RAY DIFFRACTION' 2 ? refined 7.7573 11.4070 13.5615 -0.0362 -0.0317 -0.0574 -0.0019 -0.0069 -0.0060 3.1821 0.2948 0.8742 -0.1665 0.1762 0.0478 0.0419 -0.0257 -0.0162 0.3912 -0.0487 0.0368 0.0041 0.0077 -0.0510 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' -9 ? 1 1 A A 168 . . . . ? 'X-RAY DIFFRACTION' -11 ? 2 2 B B 168 . . . . ? # _phasing.method MAD # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal REFMAC 5.2.0019 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 1 PHENIX . ? package 'P.D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 2 SHELX . ? package 'George M. Sheldrick' gsheldr@shelx.uni-ac.gwdg.de phasing http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 3 MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 4 SCALA 3.2.5 5/04/2004 other 'Phil R. Evans' pre@mrc-lmb.cam.ac.uk 'data scaling' http://www.ccp4.ac.uk/dist/html/scala.html Fortran_77 ? 5 PDB_EXTRACT 3.006 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 6 MAR345 CCD ? ? ? ? 'data collection' ? ? ? 7 MOSFLM . ? ? ? ? 'data reduction' ? ? ? 8 SHELXD . ? ? ? ? phasing ? ? ? 9 autoSHARP . ? ? ? ? phasing ? ? ? 10 # _pdbx_entry_details.entry_id 3GYD _pdbx_entry_details.sequence_details ;THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. ; _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LEU A 27 ? ? 72.58 -45.30 2 1 ASP A 62 ? A -89.74 36.15 3 1 ASN A 80 ? ? 87.38 -43.70 4 1 LEU B 27 ? ? 67.03 -21.30 5 1 ASN B 80 ? ? 72.68 -2.37 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 13 ? CE ? A LYS 32 CE 2 1 Y 1 A LYS 13 ? NZ ? A LYS 32 NZ 3 1 Y 1 A ASN 80 ? CG ? A ASN 99 CG 4 1 Y 1 A ASN 80 ? OD1 ? A ASN 99 OD1 5 1 Y 1 A ASN 80 ? ND2 ? A ASN 99 ND2 6 1 Y 1 A LYS 88 ? CE ? A LYS 107 CE 7 1 Y 1 A LYS 88 ? NZ ? A LYS 107 NZ 8 1 Y 1 A GLU 166 ? CG ? A GLU 185 CG 9 1 Y 1 A GLU 166 ? CD ? A GLU 185 CD 10 1 Y 1 A GLU 166 ? OE1 ? A GLU 185 OE1 11 1 Y 1 A GLU 166 ? OE2 ? A GLU 185 OE2 12 1 Y 1 B LYS 13 ? NZ ? B LYS 32 NZ 13 1 Y 1 B ASN 80 ? CG ? B ASN 99 CG 14 1 Y 1 B ASN 80 ? OD1 ? B ASN 99 OD1 15 1 Y 1 B ASN 80 ? ND2 ? B ASN 99 ND2 16 1 Y 1 B LYS 88 ? CE ? B LYS 107 CE 17 1 Y 1 B LYS 88 ? NZ ? B LYS 107 NZ 18 1 Y 1 B GLN 128 ? CD ? B GLN 147 CD 19 1 Y 1 B GLN 128 ? OE1 ? B GLN 147 OE1 20 1 Y 1 B GLN 128 ? NE2 ? B GLN 147 NE2 21 1 Y 1 B LYS 135 ? NZ ? B LYS 154 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MSE -18 ? A MSE 1 2 1 Y 1 A GLY -17 ? A GLY 2 3 1 Y 1 A SER -16 ? A SER 3 4 1 Y 1 A ASP -15 ? A ASP 4 5 1 Y 1 A LYS -14 ? A LYS 5 6 1 Y 1 A ILE -13 ? A ILE 6 7 1 Y 1 A HIS -12 ? A HIS 7 8 1 Y 1 A HIS -11 ? A HIS 8 9 1 Y 1 A HIS -10 ? A HIS 9 10 1 Y 1 B MSE -18 ? B MSE 1 11 1 Y 1 B GLY -17 ? B GLY 2 12 1 Y 1 B SER -16 ? B SER 3 13 1 Y 1 B ASP -15 ? B ASP 4 14 1 Y 1 B LYS -14 ? B LYS 5 15 1 Y 1 B ILE -13 ? B ILE 6 16 1 Y 1 B HIS -12 ? B HIS 7 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 "ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE" CMP 3 GLYCEROL GOL 4 water HOH #