HEADER DNA BINDING PROTEIN 03-APR-09 3GYD TITLE CRYSTAL STRUCTURE OF A CYCLIC NUCLEOTIDE-BINDING DOMAIN (MFLA_1926) TITLE 2 FROM METHYLOBACILLUS FLAGELLATUS KT AT 1.79 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYCLIC NUCLEOTIDE-BINDING DOMAIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: CNMP-BD PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHYLOBACILLUS FLAGELLATUS KT; SOURCE 3 ORGANISM_TAXID: 265072; SOURCE 4 STRAIN: KT / DSM 6875; SOURCE 5 ATCC: 51484; SOURCE 6 GENE: MFLA_1926, YP_546034.1; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS NUCLEOTIDE BINDING PROTEIN, STRUCTURAL GENOMICS, JOINT CENTER FOR KEYWDS 2 STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-2, DNA KEYWDS 3 BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 6 01-FEB-23 3GYD 1 REMARK SEQADV REVDAT 5 24-JUL-19 3GYD 1 REMARK LINK REVDAT 4 01-NOV-17 3GYD 1 REMARK REVDAT 3 13-JUL-11 3GYD 1 VERSN REVDAT 2 23-MAR-11 3GYD 1 HEADER TITLE KEYWDS REVDAT 1 21-APR-09 3GYD 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF CYCLIC NUCLEOTIDE-BINDING DOMAIN JRNL TITL 2 (YP_546034.1) FROM METHYLOBACILLUS FLAGELLATUS KT AT 1.79 A JRNL TITL 3 RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.79 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.79 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.37 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 30921 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1549 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.79 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.84 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1923 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.05 REMARK 3 BIN R VALUE (WORKING SET) : 0.2400 REMARK 3 BIN FREE R VALUE SET COUNT : 119 REMARK 3 BIN FREE R VALUE : 0.2780 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2795 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 50 REMARK 3 SOLVENT ATOMS : 256 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.37000 REMARK 3 B22 (A**2) : 1.37000 REMARK 3 B33 (A**2) : -0.07000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.19000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.135 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.128 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.092 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.717 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3028 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2023 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4128 ; 1.569 ; 2.015 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4964 ; 0.990 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 381 ; 5.856 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 127 ;27.901 ;24.252 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 524 ;13.913 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;17.166 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 464 ; 0.104 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3377 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 593 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 643 ; 0.211 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2173 ; 0.195 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1461 ; 0.179 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1555 ; 0.086 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 232 ; 0.172 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 26 ; 0.182 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 49 ; 0.249 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 17 ; 0.150 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2027 ; 1.374 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 754 ; 0.345 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3008 ; 1.967 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1284 ; 1.415 ; 2.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1120 ; 2.044 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 5 A 164 6 REMARK 3 1 B 5 B 164 6 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 LOOSE POSITIONAL 1 A (A): 1978 ; 0.380 ; 5.000 REMARK 3 LOOSE THERMAL 1 A (A**2): 1978 ; 1.640 ;10.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -9 A 168 REMARK 3 ORIGIN FOR THE GROUP (A): 31.9687 10.5016 19.4490 REMARK 3 T TENSOR REMARK 3 T11: -0.0250 T22: -0.0788 REMARK 3 T33: -0.0622 T12: -0.0012 REMARK 3 T13: 0.0113 T23: 0.0128 REMARK 3 L TENSOR REMARK 3 L11: 2.8614 L22: 0.3213 REMARK 3 L33: 0.6051 L12: -0.2214 REMARK 3 L13: 0.1732 L23: 0.0408 REMARK 3 S TENSOR REMARK 3 S11: 0.0366 S12: 0.1348 S13: -0.0168 REMARK 3 S21: -0.0204 S22: -0.0589 S23: -0.0543 REMARK 3 S31: -0.0039 S32: 0.0510 S33: 0.0223 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B -11 B 168 REMARK 3 ORIGIN FOR THE GROUP (A): 7.7573 11.4070 13.5615 REMARK 3 T TENSOR REMARK 3 T11: -0.0362 T22: -0.0317 REMARK 3 T33: -0.0574 T12: -0.0019 REMARK 3 T13: -0.0069 T23: -0.0060 REMARK 3 L TENSOR REMARK 3 L11: 3.1821 L22: 0.2948 REMARK 3 L33: 0.8742 L12: -0.1665 REMARK 3 L13: 0.1762 L23: 0.0478 REMARK 3 S TENSOR REMARK 3 S11: 0.0419 S12: 0.3912 S13: -0.0487 REMARK 3 S21: 0.0041 S22: -0.0257 S23: 0.0368 REMARK 3 S31: 0.0077 S32: -0.0510 S33: -0.0162 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. ATOM RECORDS CONTAIN RESIDUAL B FACTORS REMARK 3 ONLY. 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE REMARK 3 ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED REMARK 3 SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 4. AN REMARK 3 ADENOSINE-3'-5'-CYCLIC-MONOPHOSPHATE (CMP) IS MODELED INTO THE REMARK 3 LIGAND BINDING SITE ON EACH MONOMER BASED ON THE PRESENCE OF REMARK 3 CLEAR AND CONCLUSIVE ELECTRON DENSITY. REMARK 4 REMARK 4 3GYD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-APR-09. REMARK 100 THE DEPOSITION ID IS D_1000052460. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-JAN-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 10.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837, 0.97956, 0.97944 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : FLAT COLLIMATING MIRROR, TOROID REMARK 200 FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.2.5 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30961 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.790 REMARK 200 RESOLUTION RANGE LOW (A) : 29.374 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : 0.09000 REMARK 200 FOR THE DATA SET : 6.1440 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.79 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.8 REMARK 200 DATA REDUNDANCY IN SHELL : 2.30 REMARK 200 R MERGE FOR SHELL (I) : 0.55900 REMARK 200 R SYM FOR SHELL (I) : 0.55900 REMARK 200 FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NANODROP, 36.0% PEG 3000, 0.1M CHES PH REMARK 280 10.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 19.87250 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14810 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.4 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -18 REMARK 465 GLY A -17 REMARK 465 SER A -16 REMARK 465 ASP A -15 REMARK 465 LYS A -14 REMARK 465 ILE A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 MSE B -18 REMARK 465 GLY B -17 REMARK 465 SER B -16 REMARK 465 ASP B -15 REMARK 465 LYS B -14 REMARK 465 ILE B -13 REMARK 465 HIS B -12 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 13 CE NZ REMARK 470 ASN A 80 CG OD1 ND2 REMARK 470 LYS A 88 CE NZ REMARK 470 GLU A 166 CG CD OE1 OE2 REMARK 470 LYS B 13 NZ REMARK 470 ASN B 80 CG OD1 ND2 REMARK 470 LYS B 88 CE NZ REMARK 470 GLN B 128 CD OE1 NE2 REMARK 470 LYS B 135 NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 27 -45.30 72.58 REMARK 500 ASP A 62 36.15 -89.74 REMARK 500 ASN A 80 -43.70 87.38 REMARK 500 LEU B 27 -21.30 67.03 REMARK 500 ASN B 80 -2.37 72.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CMP A 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CMP B 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 169 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 390943 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. DBREF 3GYD A 1 168 UNP Q1GZZ4 Q1GZZ4_METFK 1 168 DBREF 3GYD B 1 168 UNP Q1GZZ4 Q1GZZ4_METFK 1 168 SEQADV 3GYD MSE A -18 UNP Q1GZZ4 EXPRESSION TAG SEQADV 3GYD GLY A -17 UNP Q1GZZ4 EXPRESSION TAG SEQADV 3GYD SER A -16 UNP Q1GZZ4 EXPRESSION TAG SEQADV 3GYD ASP A -15 UNP Q1GZZ4 EXPRESSION TAG SEQADV 3GYD LYS A -14 UNP Q1GZZ4 EXPRESSION TAG SEQADV 3GYD ILE A -13 UNP Q1GZZ4 EXPRESSION TAG SEQADV 3GYD HIS A -12 UNP Q1GZZ4 EXPRESSION TAG SEQADV 3GYD HIS A -11 UNP Q1GZZ4 EXPRESSION TAG SEQADV 3GYD HIS A -10 UNP Q1GZZ4 EXPRESSION TAG SEQADV 3GYD HIS A -9 UNP Q1GZZ4 EXPRESSION TAG SEQADV 3GYD HIS A -8 UNP Q1GZZ4 EXPRESSION TAG SEQADV 3GYD HIS A -7 UNP Q1GZZ4 EXPRESSION TAG SEQADV 3GYD GLU A -6 UNP Q1GZZ4 EXPRESSION TAG SEQADV 3GYD ASN A -5 UNP Q1GZZ4 EXPRESSION TAG SEQADV 3GYD LEU A -4 UNP Q1GZZ4 EXPRESSION TAG SEQADV 3GYD TYR A -3 UNP Q1GZZ4 EXPRESSION TAG SEQADV 3GYD PHE A -2 UNP Q1GZZ4 EXPRESSION TAG SEQADV 3GYD GLN A -1 UNP Q1GZZ4 EXPRESSION TAG SEQADV 3GYD GLY A 0 UNP Q1GZZ4 EXPRESSION TAG SEQADV 3GYD MSE B -18 UNP Q1GZZ4 EXPRESSION TAG SEQADV 3GYD GLY B -17 UNP Q1GZZ4 EXPRESSION TAG SEQADV 3GYD SER B -16 UNP Q1GZZ4 EXPRESSION TAG SEQADV 3GYD ASP B -15 UNP Q1GZZ4 EXPRESSION TAG SEQADV 3GYD LYS B -14 UNP Q1GZZ4 EXPRESSION TAG SEQADV 3GYD ILE B -13 UNP Q1GZZ4 EXPRESSION TAG SEQADV 3GYD HIS B -12 UNP Q1GZZ4 EXPRESSION TAG SEQADV 3GYD HIS B -11 UNP Q1GZZ4 EXPRESSION TAG SEQADV 3GYD HIS B -10 UNP Q1GZZ4 EXPRESSION TAG SEQADV 3GYD HIS B -9 UNP Q1GZZ4 EXPRESSION TAG SEQADV 3GYD HIS B -8 UNP Q1GZZ4 EXPRESSION TAG SEQADV 3GYD HIS B -7 UNP Q1GZZ4 EXPRESSION TAG SEQADV 3GYD GLU B -6 UNP Q1GZZ4 EXPRESSION TAG SEQADV 3GYD ASN B -5 UNP Q1GZZ4 EXPRESSION TAG SEQADV 3GYD LEU B -4 UNP Q1GZZ4 EXPRESSION TAG SEQADV 3GYD TYR B -3 UNP Q1GZZ4 EXPRESSION TAG SEQADV 3GYD PHE B -2 UNP Q1GZZ4 EXPRESSION TAG SEQADV 3GYD GLN B -1 UNP Q1GZZ4 EXPRESSION TAG SEQADV 3GYD GLY B 0 UNP Q1GZZ4 EXPRESSION TAG SEQRES 1 A 187 MSE GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS GLU SEQRES 2 A 187 ASN LEU TYR PHE GLN GLY MSE TYR PRO ASP LEU VAL HIS SEQRES 3 A 187 LEU GLY GLY ALA ASP LYS TYR PHE GLU GLU ILE LEU GLU SEQRES 4 A 187 ILE VAL ASN LYS ILE LYS LEU PHE GLY ASP PHE SER ASN SEQRES 5 A 187 GLU GLU VAL ARG TYR LEU CYS SER TYR MSE GLN CYS TYR SEQRES 6 A 187 ALA ALA PRO ARG ASP CYS GLN LEU LEU THR GLU GLY ASP SEQRES 7 A 187 PRO GLY ASP TYR LEU LEU LEU ILE LEU THR GLY GLU VAL SEQRES 8 A 187 ASN VAL ILE LYS ASP ILE PRO ASN LYS GLY ILE GLN THR SEQRES 9 A 187 ILE ALA LYS VAL GLY ALA GLY ALA ILE ILE GLY GLU MSE SEQRES 10 A 187 SER MSE ILE ASP GLY MSE PRO ARG SER ALA SER CYS VAL SEQRES 11 A 187 ALA SER LEU PRO THR ASP PHE ALA VAL LEU SER ARG ASP SEQRES 12 A 187 ALA LEU TYR GLN LEU LEU ALA ASN MSE PRO LYS LEU GLY SEQRES 13 A 187 ASN LYS VAL LEU ILE ARG LEU LEU GLN LEU LEU THR ALA SEQRES 14 A 187 ARG PHE ARG GLU SER TYR ASP ARG ILE LEU PRO LYS THR SEQRES 15 A 187 LEU GLY GLU LEU ILE SEQRES 1 B 187 MSE GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS GLU SEQRES 2 B 187 ASN LEU TYR PHE GLN GLY MSE TYR PRO ASP LEU VAL HIS SEQRES 3 B 187 LEU GLY GLY ALA ASP LYS TYR PHE GLU GLU ILE LEU GLU SEQRES 4 B 187 ILE VAL ASN LYS ILE LYS LEU PHE GLY ASP PHE SER ASN SEQRES 5 B 187 GLU GLU VAL ARG TYR LEU CYS SER TYR MSE GLN CYS TYR SEQRES 6 B 187 ALA ALA PRO ARG ASP CYS GLN LEU LEU THR GLU GLY ASP SEQRES 7 B 187 PRO GLY ASP TYR LEU LEU LEU ILE LEU THR GLY GLU VAL SEQRES 8 B 187 ASN VAL ILE LYS ASP ILE PRO ASN LYS GLY ILE GLN THR SEQRES 9 B 187 ILE ALA LYS VAL GLY ALA GLY ALA ILE ILE GLY GLU MSE SEQRES 10 B 187 SER MSE ILE ASP GLY MSE PRO ARG SER ALA SER CYS VAL SEQRES 11 B 187 ALA SER LEU PRO THR ASP PHE ALA VAL LEU SER ARG ASP SEQRES 12 B 187 ALA LEU TYR GLN LEU LEU ALA ASN MSE PRO LYS LEU GLY SEQRES 13 B 187 ASN LYS VAL LEU ILE ARG LEU LEU GLN LEU LEU THR ALA SEQRES 14 B 187 ARG PHE ARG GLU SER TYR ASP ARG ILE LEU PRO LYS THR SEQRES 15 B 187 LEU GLY GLU LEU ILE MODRES 3GYD MSE A 1 MET SELENOMETHIONINE MODRES 3GYD MSE A 43 MET SELENOMETHIONINE MODRES 3GYD MSE A 98 MET SELENOMETHIONINE MODRES 3GYD MSE A 100 MET SELENOMETHIONINE MODRES 3GYD MSE A 104 MET SELENOMETHIONINE MODRES 3GYD MSE A 133 MET SELENOMETHIONINE MODRES 3GYD MSE B 1 MET SELENOMETHIONINE MODRES 3GYD MSE B 43 MET SELENOMETHIONINE MODRES 3GYD MSE B 98 MET SELENOMETHIONINE MODRES 3GYD MSE B 100 MET SELENOMETHIONINE MODRES 3GYD MSE B 104 MET SELENOMETHIONINE MODRES 3GYD MSE B 133 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 43 8 HET MSE A 98 8 HET MSE A 100 8 HET MSE A 104 16 HET MSE A 133 16 HET MSE B 1 8 HET MSE B 43 8 HET MSE B 98 8 HET MSE B 100 8 HET MSE B 104 16 HET MSE B 133 8 HET CMP A 300 22 HET CMP B 300 22 HET GOL B 169 6 HETNAM MSE SELENOMETHIONINE HETNAM CMP ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE HETNAM GOL GLYCEROL HETSYN CMP CYCLIC AMP; CAMP HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 12(C5 H11 N O2 SE) FORMUL 3 CMP 2(C10 H12 N5 O6 P) FORMUL 5 GOL C3 H8 O3 FORMUL 6 HOH *256(H2 O) HELIX 1 1 HIS A -7 PHE A -2 1 6 HELIX 2 2 MSE A 1 LEU A 5 5 5 HELIX 3 3 TYR A 14 ASN A 23 1 10 HELIX 4 4 SER A 32 SER A 41 1 10 HELIX 5 5 GLY A 96 GLY A 103 1 8 HELIX 6 6 ARG A 123 MSE A 133 1 11 HELIX 7 7 MSE A 133 LEU A 160 1 28 HELIX 8 8 PRO A 161 THR A 163 5 3 HELIX 9 9 HIS B -11 TYR B 2 1 14 HELIX 10 10 TYR B 14 ASN B 23 1 10 HELIX 11 11 SER B 32 TYR B 42 1 11 HELIX 12 12 GLY B 96 GLY B 103 1 8 HELIX 13 13 ARG B 123 MSE B 133 1 11 HELIX 14 14 MSE B 133 LEU B 160 1 28 HELIX 15 15 PRO B 161 THR B 163 5 3 SHEET 1 A 5 VAL A 6 GLY A 10 0 SHEET 2 A 5 GLN A 44 ALA A 48 -1 O CYS A 45 N GLY A 9 SHEET 3 A 5 SER A 109 SER A 122 -1 O THR A 116 N ALA A 48 SHEET 4 A 5 TYR A 63 ILE A 78 -1 N ILE A 75 O SER A 109 SHEET 5 A 5 GLY A 82 GLY A 90 -1 O GLY A 82 N ILE A 78 SHEET 1 B 4 GLN A 53 LEU A 55 0 SHEET 2 B 4 SER A 109 SER A 122 -1 O CYS A 110 N LEU A 55 SHEET 3 B 4 TYR A 63 ILE A 78 -1 N ILE A 75 O SER A 109 SHEET 4 B 4 ILE A 94 ILE A 95 -1 O ILE A 95 N LEU A 65 SHEET 1 C 5 VAL B 6 GLY B 10 0 SHEET 2 C 5 GLN B 44 ALA B 48 -1 O CYS B 45 N LEU B 8 SHEET 3 C 5 THR B 116 SER B 122 -1 O THR B 116 N ALA B 48 SHEET 4 C 5 TYR B 63 THR B 69 -1 N LEU B 68 O ASP B 117 SHEET 5 C 5 ILE B 94 ILE B 95 -1 O ILE B 95 N LEU B 65 SHEET 1 D 4 CYS B 52 LEU B 55 0 SHEET 2 D 4 SER B 109 ALA B 112 -1 O ALA B 112 N CYS B 52 SHEET 3 D 4 GLU B 71 ILE B 78 -1 N ILE B 75 O SER B 109 SHEET 4 D 4 GLY B 82 GLY B 90 -1 O ALA B 87 N VAL B 74 LINK C GLY A 0 N MSE A 1 1555 1555 1.33 LINK C MSE A 1 N TYR A 2 1555 1555 1.35 LINK C TYR A 42 N MSE A 43 1555 1555 1.34 LINK C MSE A 43 N GLN A 44 1555 1555 1.33 LINK C GLU A 97 N MSE A 98 1555 1555 1.33 LINK C MSE A 98 N SER A 99 1555 1555 1.34 LINK C SER A 99 N MSE A 100 1555 1555 1.32 LINK C MSE A 100 N ILE A 101 1555 1555 1.33 LINK C GLY A 103 N AMSE A 104 1555 1555 1.34 LINK C GLY A 103 N BMSE A 104 1555 1555 1.33 LINK C AMSE A 104 N PRO A 105 1555 1555 1.34 LINK C BMSE A 104 N PRO A 105 1555 1555 1.34 LINK C ASN A 132 N AMSE A 133 1555 1555 1.33 LINK C ASN A 132 N BMSE A 133 1555 1555 1.33 LINK C AMSE A 133 N PRO A 134 1555 1555 1.35 LINK C BMSE A 133 N PRO A 134 1555 1555 1.34 LINK C GLY B 0 N MSE B 1 1555 1555 1.34 LINK C MSE B 1 N TYR B 2 1555 1555 1.34 LINK C TYR B 42 N MSE B 43 1555 1555 1.33 LINK C MSE B 43 N AGLN B 44 1555 1555 1.34 LINK C MSE B 43 N BGLN B 44 1555 1555 1.33 LINK C GLU B 97 N MSE B 98 1555 1555 1.33 LINK C MSE B 98 N SER B 99 1555 1555 1.34 LINK C SER B 99 N MSE B 100 1555 1555 1.34 LINK C MSE B 100 N ILE B 101 1555 1555 1.32 LINK C GLY B 103 N AMSE B 104 1555 1555 1.33 LINK C GLY B 103 N BMSE B 104 1555 1555 1.33 LINK C AMSE B 104 N PRO B 105 1555 1555 1.35 LINK C BMSE B 104 N PRO B 105 1555 1555 1.35 LINK C ASN B 132 N MSE B 133 1555 1555 1.33 LINK C MSE B 133 N PRO B 134 1555 1555 1.34 SITE 1 AC1 14 VAL A 74 ALA A 87 ILE A 95 GLY A 96 SITE 2 AC1 14 GLU A 97 MSE A 98 SER A 99 ARG A 106 SITE 3 AC1 14 SER A 107 ALA A 108 CYS A 110 ARG A 151 SITE 4 AC1 14 SER A 155 HOH A 323 SITE 1 AC2 15 TYR A 156 ILE B 86 ALA B 87 ILE B 95 SITE 2 AC2 15 GLY B 96 GLU B 97 MSE B 98 SER B 99 SITE 3 AC2 15 ARG B 106 SER B 107 ALA B 108 CYS B 110 SITE 4 AC2 15 ARG B 151 SER B 155 HOH B 182 SITE 1 AC3 7 LYS B 24 ARG B 143 GLN B 146 LEU B 147 SITE 2 AC3 7 HOH B 176 HOH B 234 HOH B 271 CRYST1 60.032 39.745 70.977 90.00 101.85 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016658 0.000000 0.003494 0.00000 SCALE2 0.000000 0.025160 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014396 0.00000