HEADER TRANSCRIPTION 05-APR-09 3GYU TITLE NUCLEAR RECEPTOR DAF-12 FROM PARASITIC NEMATODE STRONGYLOIDES TITLE 2 STERCORALIS IN COMPLEX WITH ITS PHYSIOLOGICAL LIGAND DAFACHRONIC ACID TITLE 3 DELTA 7 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEAR HORMONE RECEPTOR OF THE STEROID/THYROID HORMONE COMPND 3 RECEPTORS SUPERFAMILY; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: LIGAND BINDING DOMAIN; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: SRC1; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: NUCLEAR RECEPTOR BINDING MOTIF 4; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STRONGYLOIDES STERCORALIS; SOURCE 3 ORGANISM_TAXID: 6248; SOURCE 4 GENE: DAF-12; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET24A; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES KEYWDS NUCLEAR RECEPTOR, LIGAND BINDING DOMAIN, DAFACHRONIC ACID, SRC1, KEYWDS 2 NEMATODE, STRONGYLOIDES STERCORALIS, DNA-BINDING, METAL-BINDING, KEYWDS 3 NUCLEUS, RECEPTOR, TRANSCRIPTION, TRANSCRIPTION REGULATION, ZINC, KEYWDS 4 ZINC-FINGER EXPDTA X-RAY DIFFRACTION AUTHOR X.E.ZHOU,Z.WANG,K.SUINO-POWELL,D.L.MOTOLA,A.CONNEELY,C.OGATA, AUTHOR 2 K.K.SHARMA,R.J.AUCHUS,S.A.KLIEWER,H.E.XU,D.J.MANGELSDORF REVDAT 3 03-APR-24 3GYU 1 REMARK SEQADV LINK REVDAT 2 01-NOV-17 3GYU 1 REMARK REVDAT 1 07-JUL-09 3GYU 0 JRNL AUTH Z.WANG,X.E.ZHOU,D.L.MOTOLA,X.GAO,K.SUINO-POWELL,A.CONNEELY, JRNL AUTH 2 C.OGATA,K.K.SHARMA,R.J.AUCHUS,J.B.LOK,J.M.HAWDON, JRNL AUTH 3 S.A.KLIEWER,H.E.XU,D.J.MANGELSDORF JRNL TITL IDENTIFICATION OF THE NUCLEAR RECEPTOR DAF-12 AS A JRNL TITL 2 THERAPEUTIC TARGET IN PARASITIC NEMATODES. JRNL REF PROC.NATL.ACAD.SCI.USA V. 106 9138 2009 JRNL REFN ISSN 0027-8424 JRNL PMID 19497877 JRNL DOI 10.1073/PNAS.0904064106 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0066 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.59 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 13559 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.255 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.100 REMARK 3 FREE R VALUE TEST SET COUNT : 963 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 869 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.48 REMARK 3 BIN R VALUE (WORKING SET) : 0.2480 REMARK 3 BIN FREE R VALUE SET COUNT : 102 REMARK 3 BIN FREE R VALUE : 0.2790 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2022 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 141 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 50.29 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.42000 REMARK 3 B22 (A**2) : 0.42000 REMARK 3 B33 (A**2) : -0.63000 REMARK 3 B12 (A**2) : 0.21000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.187 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.136 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.936 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.902 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2087 ; 0.026 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1938 ; 0.007 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2812 ; 1.897 ; 1.987 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4529 ; 3.873 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 250 ; 4.297 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 98 ;38.421 ;24.796 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 398 ;16.965 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;12.871 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 322 ; 0.116 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2257 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 403 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1253 ; 1.363 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 513 ; 0.292 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2019 ; 2.593 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 834 ; 3.760 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 793 ; 6.083 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : NULL REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 4 REMARK 4 3GYU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-APR-09. REMARK 100 THE DEPOSITION ID IS D_1000052477. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-APR-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13572 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : 0.12500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.7230 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.20 REMARK 200 R MERGE FOR SHELL (I) : 0.66900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.580 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: SSDAF-12/DELTA4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000, AMMONIUM SULFATE, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 27.17133 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 13.58567 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 20.37850 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 6.79283 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 33.96417 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12590 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 510 REMARK 465 SER A 511 REMARK 465 ALA B 739 REMARK 465 GLN B 740 REMARK 465 GLN B 741 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 42 O HOH A 70 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 VAL A 666 CB VAL A 666 CG2 -0.129 REMARK 500 SER A 693 CB SER A 693 OG -0.083 REMARK 500 TYR A 753 CD1 TYR A 753 CE1 -0.092 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 560 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 PRO A 631 C - N - CA ANGL. DEV. = 10.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 533 74.46 -101.29 REMARK 500 HIS A 649 160.36 -40.11 REMARK 500 HIS A 703 80.31 -165.69 REMARK 500 ASN A 727 37.63 -91.90 REMARK 500 SER B 743 104.71 84.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DL7 A 200 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3GYT RELATED DB: PDB DBREF 3GYU A 512 753 UNP Q9XZJ5 Q9XZJ5_9BILA 512 753 DBREF 3GYU B 739 751 PDB 3GYU 3GYU 739 751 SEQADV 3GYU GLY A 510 UNP Q9XZJ5 EXPRESSION TAG SEQADV 3GYU SER A 511 UNP Q9XZJ5 EXPRESSION TAG SEQRES 1 A 244 GLY SER TYR THR LEU SER GLU LYS ASP LEU LYS GLU LEU SEQRES 2 A 244 ASP SER ILE ARG ASP SER PHE GLN CYS MSE ASN GLU PRO SEQRES 3 A 244 LEU ASP ASN ASP GLN GLN ALA SER THR LEU ALA LYS LYS SEQRES 4 A 244 GLU HIS ASN PRO THR ASP ILE LEU ASN VAL MSE ASP ILE SEQRES 5 A 244 THR MSE ARG ARG LEU VAL LYS MSE ALA LYS ARG LEU GLY SEQRES 6 A 244 ALA PHE ASN GLU ILE SER GLU ALA GLY LYS PHE SER LEU SEQRES 7 A 244 LEU LYS GLY GLY MSE ILE GLU MSE LEU THR ILE ARG GLY SEQRES 8 A 244 VAL THR VAL PHE ASN ALA ASP LYS GLY VAL TRP GLN THR SEQRES 9 A 244 PRO VAL ASP GLY HIS SER GLN ILE SER PHE ASN MSE PHE SEQRES 10 A 244 ASP LYS LEU ARG PRO ASP ILE LYS ASP THR GLN LYS LYS SEQRES 11 A 244 GLY PHE LEU HIS PHE PHE ASN LEU LEU HIS SER ASP VAL SEQRES 12 A 244 ARG LYS ASN ASP LEU ALA ILE ASP ILE ILE VAL LEU MSE SEQRES 13 A 244 VAL LEU PHE ASP SER LYS ARG GLU GLY LEU VAL SER GLN SEQRES 14 A 244 GLN ASP LYS GLU THR VAL GLU LYS LEU HIS ARG ASN TYR SEQRES 15 A 244 GLU SER LEU LEU HIS ARG TYR LEU TYR SER ILE HIS LYS SEQRES 16 A 244 GLU GLU ALA GLU GLN ARG PHE ALA SER ILE PRO LYS ALA SEQRES 17 A 244 LEU VAL ALA LEU ARG LYS VAL ALA GLU ASN ALA VAL THR SEQRES 18 A 244 LEU PHE LEU GLY ALA GLY ASN THR THR GLU ALA ALA SER SEQRES 19 A 244 LEU PRO LYS GLU PHE PHE ALA THR ASN TYR SEQRES 1 B 13 ALA GLN GLN LYS SER LEU LEU GLN GLN LEU LEU THR GLU MODRES 3GYU MSE A 532 MET SELENOMETHIONINE MODRES 3GYU MSE A 559 MET SELENOMETHIONINE MODRES 3GYU MSE A 563 MET SELENOMETHIONINE MODRES 3GYU MSE A 569 MET SELENOMETHIONINE MODRES 3GYU MSE A 592 MET SELENOMETHIONINE MODRES 3GYU MSE A 595 MET SELENOMETHIONINE MODRES 3GYU MSE A 625 MET SELENOMETHIONINE MODRES 3GYU MSE A 665 MET SELENOMETHIONINE HET MSE A 532 8 HET MSE A 559 8 HET MSE A 563 8 HET MSE A 569 8 HET MSE A 592 8 HET MSE A 595 8 HET MSE A 625 8 HET MSE A 665 8 HET DL7 A 200 30 HETNAM MSE SELENOMETHIONINE HETNAM DL7 (5BETA,14BETA,17ALPHA,25R)-3-OXOCHOLEST-7-EN-26-OIC HETNAM 2 DL7 ACID FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 3 DL7 C27 H42 O3 FORMUL 4 HOH *141(H2 O) HELIX 1 1 SER A 515 PHE A 529 1 15 HELIX 2 2 GLN A 530 MSE A 532 5 3 HELIX 3 3 ASN A 538 LYS A 547 1 10 HELIX 4 4 ASN A 551 ARG A 572 1 22 HELIX 5 5 ALA A 575 ILE A 579 5 5 HELIX 6 6 SER A 580 VAL A 603 1 24 HELIX 7 7 ASN A 624 LEU A 629 5 6 HELIX 8 8 ILE A 633 LEU A 647 1 15 HELIX 9 9 HIS A 649 ASN A 655 1 7 HELIX 10 10 ASN A 655 PHE A 668 1 14 HELIX 11 11 SER A 677 HIS A 703 1 27 HELIX 12 12 GLU A 706 ASN A 727 1 22 HELIX 13 13 ALA A 742 GLU A 747 1 6 HELIX 14 14 SER B 743 GLU B 751 1 9 SHEET 1 A 3 PHE A 604 ASN A 605 0 SHEET 2 A 3 VAL A 610 GLN A 612 -1 O VAL A 610 N ASN A 605 SHEET 3 A 3 GLN A 620 SER A 622 -1 O ILE A 621 N TRP A 611 LINK C CYS A 531 N MSE A 532 1555 1555 1.34 LINK C MSE A 532 N ASN A 533 1555 1555 1.32 LINK C VAL A 558 N MSE A 559 1555 1555 1.35 LINK C MSE A 559 N ASP A 560 1555 1555 1.32 LINK C THR A 562 N MSE A 563 1555 1555 1.32 LINK C MSE A 563 N ARG A 564 1555 1555 1.33 LINK C LYS A 568 N MSE A 569 1555 1555 1.31 LINK C MSE A 569 N ALA A 570 1555 1555 1.33 LINK C GLY A 591 N MSE A 592 1555 1555 1.32 LINK C MSE A 592 N ILE A 593 1555 1555 1.35 LINK C GLU A 594 N MSE A 595 1555 1555 1.32 LINK C MSE A 595 N LEU A 596 1555 1555 1.30 LINK C ASN A 624 N MSE A 625 1555 1555 1.32 LINK C MSE A 625 N PHE A 626 1555 1555 1.34 LINK C LEU A 664 N MSE A 665 1555 1555 1.30 LINK C MSE A 665 N VAL A 666 1555 1555 1.33 SITE 1 AC1 10 LEU A 545 MSE A 559 THR A 562 ARG A 599 SITE 2 AC1 10 GLY A 600 THR A 613 VAL A 615 GLN A 637 SITE 3 AC1 10 ALA A 728 LEU A 731 CRYST1 120.946 120.946 40.757 90.00 90.00 120.00 P 65 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008268 0.004774 0.000000 0.00000 SCALE2 0.000000 0.009547 0.000000 0.00000 SCALE3 0.000000 0.000000 0.024536 0.00000