HEADER CHAPERONE 06-APR-09 3GYZ TITLE CRYSTAL STRUCTURE OF IPGC FROM SHIGELLA FLEXNERI COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHAPERONE PROTEIN IPGC; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 1-151; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SHIGELLA FLEXNERI; SOURCE 3 ORGANISM_TAXID: 623; SOURCE 4 STRAIN: M90T; SOURCE 5 GENE: IPGC; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS ASYMMETRIC HOMODIMER, TETRATRICOPEPTIDE REPEAT, TPR, CHAPERONE, KEYWDS 2 VIRULENCE EXPDTA X-RAY DIFFRACTION AUTHOR M.LUNELLI,R.K.LOKAREDDY,A.ZYCHLINSKY,M.KOLBE REVDAT 5 29-MAY-24 3GYZ 1 REMARK REVDAT 4 10-NOV-21 3GYZ 1 REMARK SEQADV REVDAT 3 13-JUL-11 3GYZ 1 VERSN REVDAT 2 07-JUL-09 3GYZ 1 JRNL REVDAT 1 16-JUN-09 3GYZ 0 JRNL AUTH M.LUNELLI,R.K.LOKAREDDY,A.ZYCHLINSKY,M.KOLBE JRNL TITL IPAB-IPGC INTERACTION DEFINES BINDING MOTIF FOR TYPE III JRNL TITL 2 SECRETION TRANSLOCATOR JRNL REF PROC.NATL.ACAD.SCI.USA V. 106 9661 2009 JRNL REFN ISSN 0027-8424 JRNL PMID 19478065 JRNL DOI 10.1073/PNAS.0812900106 REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0044 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.69 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 31628 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1577 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.15 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.21 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2176 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.30 REMARK 3 BIN R VALUE (WORKING SET) : 0.3240 REMARK 3 BIN FREE R VALUE SET COUNT : 118 REMARK 3 BIN FREE R VALUE : 0.3280 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2308 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 53 REMARK 3 SOLVENT ATOMS : 86 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 55.24 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.16000 REMARK 3 B22 (A**2) : 0.16000 REMARK 3 B33 (A**2) : -0.23000 REMARK 3 B12 (A**2) : 0.08000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.145 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.133 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.103 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.023 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.956 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2399 ; 0.024 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3233 ; 1.938 ; 1.969 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 284 ; 5.073 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 122 ;38.286 ;25.410 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 404 ;16.643 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;21.027 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 346 ; 0.126 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1812 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1426 ; 1.252 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2288 ; 2.365 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 973 ; 3.870 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 945 ; 6.333 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 9 A 32 REMARK 3 ORIGIN FOR THE GROUP (A): 47.1790 8.0460 19.1320 REMARK 3 T TENSOR REMARK 3 T11: 0.2122 T22: 0.0882 REMARK 3 T33: 0.1162 T12: 0.0160 REMARK 3 T13: -0.0114 T23: -0.0471 REMARK 3 L TENSOR REMARK 3 L11: 2.2993 L22: 0.2214 REMARK 3 L33: 3.4188 L12: -0.5037 REMARK 3 L13: 2.6957 L23: -0.7489 REMARK 3 S TENSOR REMARK 3 S11: -0.2526 S12: -0.3198 S13: 0.2276 REMARK 3 S21: 0.0049 S22: -0.0047 S23: -0.0408 REMARK 3 S31: -0.1393 S32: -0.3085 S33: 0.2573 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 33 A 151 REMARK 3 ORIGIN FOR THE GROUP (A): 70.9610 14.0760 10.1490 REMARK 3 T TENSOR REMARK 3 T11: 0.1687 T22: 0.0798 REMARK 3 T33: 0.1273 T12: -0.0681 REMARK 3 T13: -0.0145 T23: 0.0373 REMARK 3 L TENSOR REMARK 3 L11: 0.7538 L22: 0.8282 REMARK 3 L33: 0.7031 L12: 0.7285 REMARK 3 L13: -0.4539 L23: -0.5258 REMARK 3 S TENSOR REMARK 3 S11: -0.1021 S12: 0.0082 S13: 0.0487 REMARK 3 S21: -0.0553 S22: 0.0227 S23: -0.0129 REMARK 3 S31: 0.0402 S32: 0.0830 S33: 0.0795 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 9 B 32 REMARK 3 ORIGIN FOR THE GROUP (A): 49.7210 20.8580 10.5110 REMARK 3 T TENSOR REMARK 3 T11: 0.3350 T22: 0.0225 REMARK 3 T33: 0.5741 T12: -0.0489 REMARK 3 T13: -0.0604 T23: -0.0567 REMARK 3 L TENSOR REMARK 3 L11: 8.6035 L22: 2.1724 REMARK 3 L33: 4.3900 L12: 3.2121 REMARK 3 L13: -3.0038 L23: -2.2314 REMARK 3 S TENSOR REMARK 3 S11: 0.1234 S12: -0.3601 S13: 1.9015 REMARK 3 S21: -0.0240 S22: -0.1405 S23: 0.3799 REMARK 3 S31: -0.7443 S32: 0.2663 S33: 0.0170 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 33 B 151 REMARK 3 ORIGIN FOR THE GROUP (A): 43.5490 -1.1650 3.4200 REMARK 3 T TENSOR REMARK 3 T11: 0.1776 T22: 0.0468 REMARK 3 T33: 0.0628 T12: -0.0731 REMARK 3 T13: -0.0067 T23: 0.0026 REMARK 3 L TENSOR REMARK 3 L11: 1.0322 L22: 0.6116 REMARK 3 L33: 0.8010 L12: 0.2146 REMARK 3 L13: 0.5419 L23: 0.6520 REMARK 3 S TENSOR REMARK 3 S11: 0.0439 S12: 0.0194 S13: 0.0660 REMARK 3 S21: 0.0656 S22: -0.1007 S23: 0.0330 REMARK 3 S31: 0.0521 S32: -0.0808 S33: 0.0568 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS, THE STRUCTURE WAS REFINED ALSO WITH CNS 1.2 REMARK 4 REMARK 4 3GYZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-APR-09. REMARK 100 THE DEPOSITION ID IS D_1000052482. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-MAY-07; 25-APR-07 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : ESRF; BESSY REMARK 200 BEAMLINE : ID23-1; 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97625; 0.97965, 0.97987, REMARK 200 0.97626, 0.98793 REMARK 200 MONOCHROMATOR : SILICON (1 1 1) CHANNEL-CUT; SI REMARK 200 -111 CRYSTAL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R; MAR CCD 165 REMARK 200 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE, XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31628 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 37.690 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 9.100 REMARK 200 R MERGE (I) : 0.12500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.1200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.54800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHARP, SOLOMON REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 70.68 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M ADA, 1M AMMONIUM SULFATE, PH6.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 25.15333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 50.30667 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 50.30667 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 25.15333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14680 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -62.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 SER A 2 REMARK 465 LEU A 3 REMARK 465 ASN A 4 REMARK 465 ILE A 5 REMARK 465 THR A 6 REMARK 465 GLU A 7 REMARK 465 ASN A 8 REMARK 465 GLY B 1 REMARK 465 SER B 2 REMARK 465 LEU B 3 REMARK 465 ASN B 4 REMARK 465 ILE B 5 REMARK 465 THR B 6 REMARK 465 GLU B 7 REMARK 465 ASN B 8 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR A 65 CE2 TYR A 65 CD2 0.090 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 103 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 48 -15.33 -47.02 REMARK 500 ALA A 119 65.08 -115.63 REMARK 500 ALA B 30 56.79 35.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 152 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 153 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 154 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 155 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 152 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 153 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 154 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 155 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 156 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3GZ1 RELATED DB: PDB REMARK 900 IPGC IN COMPLEX WITH CHAPERONE BINDING REGION OF IPAB REMARK 900 RELATED ID: 3GZ2 RELATED DB: PDB REMARK 900 IPGC IN COMPLEX WITH AN IPAB PEPTIDE DBREF 3GYZ A 1 151 UNP P0A2U4 IPGC_SHIFL 1 151 DBREF 3GYZ B 1 151 UNP P0A2U4 IPGC_SHIFL 1 151 SEQADV 3GYZ GLY A 1 UNP P0A2U4 MET 1 ENGINEERED MUTATION SEQADV 3GYZ GLY B 1 UNP P0A2U4 MET 1 ENGINEERED MUTATION SEQRES 1 A 151 GLY SER LEU ASN ILE THR GLU ASN GLU SER ILE SER THR SEQRES 2 A 151 ALA VAL ILE ASP ALA ILE ASN SER GLY ALA THR LEU LYS SEQRES 3 A 151 ASP ILE ASN ALA ILE PRO ASP ASP MET MET ASP ASP ILE SEQRES 4 A 151 TYR SER TYR ALA TYR ASP PHE TYR ASN LYS GLY ARG ILE SEQRES 5 A 151 GLU GLU ALA GLU VAL PHE PHE ARG PHE LEU CYS ILE TYR SEQRES 6 A 151 ASP PHE TYR ASN VAL ASP TYR ILE MET GLY LEU ALA ALA SEQRES 7 A 151 ILE TYR GLN ILE LYS GLU GLN PHE GLN GLN ALA ALA ASP SEQRES 8 A 151 LEU TYR ALA VAL ALA PHE ALA LEU GLY LYS ASN ASP TYR SEQRES 9 A 151 THR PRO VAL PHE HIS THR GLY GLN CYS GLN LEU ARG LEU SEQRES 10 A 151 LYS ALA PRO LEU LYS ALA LYS GLU CYS PHE GLU LEU VAL SEQRES 11 A 151 ILE GLN HIS SER ASN ASP GLU LYS LEU LYS ILE LYS ALA SEQRES 12 A 151 GLN SER TYR LEU ASP ALA ILE GLN SEQRES 1 B 151 GLY SER LEU ASN ILE THR GLU ASN GLU SER ILE SER THR SEQRES 2 B 151 ALA VAL ILE ASP ALA ILE ASN SER GLY ALA THR LEU LYS SEQRES 3 B 151 ASP ILE ASN ALA ILE PRO ASP ASP MET MET ASP ASP ILE SEQRES 4 B 151 TYR SER TYR ALA TYR ASP PHE TYR ASN LYS GLY ARG ILE SEQRES 5 B 151 GLU GLU ALA GLU VAL PHE PHE ARG PHE LEU CYS ILE TYR SEQRES 6 B 151 ASP PHE TYR ASN VAL ASP TYR ILE MET GLY LEU ALA ALA SEQRES 7 B 151 ILE TYR GLN ILE LYS GLU GLN PHE GLN GLN ALA ALA ASP SEQRES 8 B 151 LEU TYR ALA VAL ALA PHE ALA LEU GLY LYS ASN ASP TYR SEQRES 9 B 151 THR PRO VAL PHE HIS THR GLY GLN CYS GLN LEU ARG LEU SEQRES 10 B 151 LYS ALA PRO LEU LYS ALA LYS GLU CYS PHE GLU LEU VAL SEQRES 11 B 151 ILE GLN HIS SER ASN ASP GLU LYS LEU LYS ILE LYS ALA SEQRES 12 B 151 GLN SER TYR LEU ASP ALA ILE GLN HET SO4 A 152 5 HET GOL A 153 6 HET GOL A 154 6 HET GOL A 155 6 HET SO4 B 152 5 HET GOL B 153 6 HET GOL B 154 6 HET GOL B 155 6 HET GOL B 156 6 HET NA B 157 1 HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETNAM NA SODIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 SO4 2(O4 S 2-) FORMUL 4 GOL 7(C3 H8 O3) FORMUL 12 NA NA 1+ FORMUL 13 HOH *86(H2 O) HELIX 1 1 GLU A 9 SER A 21 1 13 HELIX 2 2 LEU A 25 ASN A 29 5 5 HELIX 3 3 PRO A 32 LYS A 49 1 18 HELIX 4 4 ARG A 51 ASP A 66 1 16 HELIX 5 5 ASN A 69 LYS A 83 1 15 HELIX 6 6 GLN A 85 GLY A 100 1 16 HELIX 7 7 TYR A 104 LEU A 117 1 14 HELIX 8 8 ALA A 119 SER A 134 1 16 HELIX 9 9 ASP A 136 GLN A 151 1 16 HELIX 10 10 SER B 10 GLY B 22 1 13 HELIX 11 11 THR B 24 ASN B 29 1 6 HELIX 12 12 PRO B 32 LYS B 49 1 18 HELIX 13 13 ARG B 51 ASP B 66 1 16 HELIX 14 14 ASN B 69 LYS B 83 1 15 HELIX 15 15 GLN B 85 GLY B 100 1 16 HELIX 16 16 TYR B 104 LEU B 117 1 14 HELIX 17 17 ALA B 119 SER B 134 1 16 HELIX 18 18 ASP B 136 GLN B 151 1 16 SITE 1 AC1 4 HIS A 109 GLN A 112 LYS A 142 HOH B 160 SITE 1 AC2 5 GLN A 85 PHE A 86 GLN A 87 GLN A 88 SITE 2 AC2 5 LEU A 117 SITE 1 AC3 6 MET A 36 ASP A 37 TYR A 40 ASN A 69 SITE 2 AC3 6 ASP A 71 TYR A 72 SITE 1 AC4 5 ASP A 33 MET A 36 ASP A 66 ASN A 69 SITE 2 AC4 5 TYR A 72 SITE 1 AC5 5 PHE B 108 HIS B 109 GLN B 112 LYS B 142 SITE 2 AC5 5 HOH B 181 SITE 1 AC6 6 ASN B 102 ASP B 103 TYR B 104 SER B 134 SITE 2 AC6 6 ASN B 135 ASP B 136 SITE 1 AC7 2 GLU B 137 GLN B 144 SITE 1 AC8 3 ASP B 66 TYR B 68 ASN B 69 SITE 1 AC9 5 ASP B 37 TYR B 40 ASN B 69 ASP B 71 SITE 2 AC9 5 TYR B 72 CRYST1 115.150 115.150 75.460 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008684 0.005014 0.000000 0.00000 SCALE2 0.000000 0.010028 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013252 0.00000