data_3GZI # _entry.id 3GZI # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3GZI pdb_00003gzi 10.2210/pdb3gzi/pdb RCSB RCSB052501 ? ? WWPDB D_1000052501 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id 379941 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 3GZI _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2009-04-07 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Crystal structure of TETR family transcriptional regulator (YP_001095692.1) from SHEWANELLA SP. PV-4 at 2.05 A resolution' _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.entry_id 3GZI _cell.length_a 77.830 _cell.length_b 45.836 _cell.length_c 68.694 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 4 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3GZI _symmetry.Int_Tables_number 18 _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Transcriptional regulator, TetR family' 25333.916 1 ? ? ? ? 2 non-polymer syn 'UNKNOWN LIGAND' ? 1 ? ? ? ? 3 non-polymer syn 1,2-ETHANEDIOL 62.068 9 ? ? ? ? 4 water nat water 18.015 128 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;G(MSE)AEAKSRVGRPSGDTQNRDKLILAARNLFIERPYAQVSIREIASLAGTDPGLIRYYFGSKEKLFST(MSE)IHET A(MSE)PVLAQLHKARRETRQESPAALLQTYYSV(MSE)SKHPHFPRL(MSE)LRIAGLDQSLPENAEVTKAFYEVVNFE NIAIFQRLKDKNLLKDDVDAHCAQLSFFA(MSE)(MSE)VFPFIVPENLLERVGIELTPDFLQLLAEQNTRLLQRGL (MSE)DVKDERDE ; _entity_poly.pdbx_seq_one_letter_code_can ;GMAEAKSRVGRPSGDTQNRDKLILAARNLFIERPYAQVSIREIASLAGTDPGLIRYYFGSKEKLFSTMIHETAMPVLAQL HKARRETRQESPAALLQTYYSVMSKHPHFPRLMLRIAGLDQSLPENAEVTKAFYEVVNFENIAIFQRLKDKNLLKDDVDA HCAQLSFFAMMVFPFIVPENLLERVGIELTPDFLQLLAEQNTRLLQRGLMDVKDERDE ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier 379941 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 MSE n 1 3 ALA n 1 4 GLU n 1 5 ALA n 1 6 LYS n 1 7 SER n 1 8 ARG n 1 9 VAL n 1 10 GLY n 1 11 ARG n 1 12 PRO n 1 13 SER n 1 14 GLY n 1 15 ASP n 1 16 THR n 1 17 GLN n 1 18 ASN n 1 19 ARG n 1 20 ASP n 1 21 LYS n 1 22 LEU n 1 23 ILE n 1 24 LEU n 1 25 ALA n 1 26 ALA n 1 27 ARG n 1 28 ASN n 1 29 LEU n 1 30 PHE n 1 31 ILE n 1 32 GLU n 1 33 ARG n 1 34 PRO n 1 35 TYR n 1 36 ALA n 1 37 GLN n 1 38 VAL n 1 39 SER n 1 40 ILE n 1 41 ARG n 1 42 GLU n 1 43 ILE n 1 44 ALA n 1 45 SER n 1 46 LEU n 1 47 ALA n 1 48 GLY n 1 49 THR n 1 50 ASP n 1 51 PRO n 1 52 GLY n 1 53 LEU n 1 54 ILE n 1 55 ARG n 1 56 TYR n 1 57 TYR n 1 58 PHE n 1 59 GLY n 1 60 SER n 1 61 LYS n 1 62 GLU n 1 63 LYS n 1 64 LEU n 1 65 PHE n 1 66 SER n 1 67 THR n 1 68 MSE n 1 69 ILE n 1 70 HIS n 1 71 GLU n 1 72 THR n 1 73 ALA n 1 74 MSE n 1 75 PRO n 1 76 VAL n 1 77 LEU n 1 78 ALA n 1 79 GLN n 1 80 LEU n 1 81 HIS n 1 82 LYS n 1 83 ALA n 1 84 ARG n 1 85 ARG n 1 86 GLU n 1 87 THR n 1 88 ARG n 1 89 GLN n 1 90 GLU n 1 91 SER n 1 92 PRO n 1 93 ALA n 1 94 ALA n 1 95 LEU n 1 96 LEU n 1 97 GLN n 1 98 THR n 1 99 TYR n 1 100 TYR n 1 101 SER n 1 102 VAL n 1 103 MSE n 1 104 SER n 1 105 LYS n 1 106 HIS n 1 107 PRO n 1 108 HIS n 1 109 PHE n 1 110 PRO n 1 111 ARG n 1 112 LEU n 1 113 MSE n 1 114 LEU n 1 115 ARG n 1 116 ILE n 1 117 ALA n 1 118 GLY n 1 119 LEU n 1 120 ASP n 1 121 GLN n 1 122 SER n 1 123 LEU n 1 124 PRO n 1 125 GLU n 1 126 ASN n 1 127 ALA n 1 128 GLU n 1 129 VAL n 1 130 THR n 1 131 LYS n 1 132 ALA n 1 133 PHE n 1 134 TYR n 1 135 GLU n 1 136 VAL n 1 137 VAL n 1 138 ASN n 1 139 PHE n 1 140 GLU n 1 141 ASN n 1 142 ILE n 1 143 ALA n 1 144 ILE n 1 145 PHE n 1 146 GLN n 1 147 ARG n 1 148 LEU n 1 149 LYS n 1 150 ASP n 1 151 LYS n 1 152 ASN n 1 153 LEU n 1 154 LEU n 1 155 LYS n 1 156 ASP n 1 157 ASP n 1 158 VAL n 1 159 ASP n 1 160 ALA n 1 161 HIS n 1 162 CYS n 1 163 ALA n 1 164 GLN n 1 165 LEU n 1 166 SER n 1 167 PHE n 1 168 PHE n 1 169 ALA n 1 170 MSE n 1 171 MSE n 1 172 VAL n 1 173 PHE n 1 174 PRO n 1 175 PHE n 1 176 ILE n 1 177 VAL n 1 178 PRO n 1 179 GLU n 1 180 ASN n 1 181 LEU n 1 182 LEU n 1 183 GLU n 1 184 ARG n 1 185 VAL n 1 186 GLY n 1 187 ILE n 1 188 GLU n 1 189 LEU n 1 190 THR n 1 191 PRO n 1 192 ASP n 1 193 PHE n 1 194 LEU n 1 195 GLN n 1 196 LEU n 1 197 LEU n 1 198 ALA n 1 199 GLU n 1 200 GLN n 1 201 ASN n 1 202 THR n 1 203 ARG n 1 204 LEU n 1 205 LEU n 1 206 GLN n 1 207 ARG n 1 208 GLY n 1 209 LEU n 1 210 MSE n 1 211 ASP n 1 212 VAL n 1 213 LYS n 1 214 ASP n 1 215 GLU n 1 216 ARG n 1 217 ASP n 1 218 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'Shew_3567, YP_001095692.1' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Shewanella loihica PV-4' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 323850 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia Coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain HK100 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name SpeedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code A3QIY5_SHELP _struct_ref.pdbx_db_accession A3QIY5 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MAEAKSRVGRPSGDTQNRDKLILAARNLFIERPYAQVSIREIASLAGTDPGLIRYYFGSKEKLFSTMIHETAMPVLAQLH KARRETRQESPAALLQTYYSVMSKHPHFPRLMLRIAGLDQSLPENAEVTKAFYEVVNFENIAIFQRLKDKNLLKDDVDAH CAQLSFFAMMVFPFIVPENLLERVGIELTPDFLQLLAEQNTRLLQRGLMDVKDERDE ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3GZI _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 218 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession A3QIY5 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 217 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 217 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 3GZI _struct_ref_seq_dif.mon_id GLY _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code A3QIY5 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'expression tag' _struct_ref_seq_dif.pdbx_auth_seq_num 0 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 UNL non-polymer . 'UNKNOWN LIGAND' ? ? ? VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 3GZI # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.42 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 49.14 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details '40.0000% Ethylene-Glycol, 5.0000% PEG-3000, 0.1M HEPES pH 7.5, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 325 mm CCD' _diffrn_detector.details 'Flat collimating mirror, toroid focusing mirror' _diffrn_detector.pdbx_collection_date 2009-01-09 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Double crystal monochromator' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97915 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline BL9-2 _diffrn_source.type 'SSRL BEAMLINE BL9-2' _diffrn_source.pdbx_wavelength 0.97915 _diffrn_source.pdbx_wavelength_list ? _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.entry_id 3GZI _reflns.d_resolution_high 2.05 _reflns.d_resolution_low 29.670 _reflns.number_obs 16032 _reflns.pdbx_Rmerge_I_obs 0.096 _reflns.pdbx_netI_over_sigmaI 10.0 _reflns.pdbx_Rsym_value 0.096 _reflns.pdbx_redundancy 4.800 _reflns.percent_possible_obs 100.000 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all ? _reflns.B_iso_Wilson_estimate 34.881 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.05 2.10 ? 5714 ? 0.765 1.8 0.765 ? 4.90 ? 1176 100.00 1 1 2.10 2.16 ? 5428 ? 0.595 2.3 0.595 ? 4.90 ? 1118 100.00 2 1 2.16 2.22 ? 5340 ? 0.443 3.0 0.443 ? 4.80 ? 1106 100.00 3 1 2.22 2.29 ? 5211 ? 0.379 3.7 0.379 ? 4.80 ? 1079 100.00 4 1 2.29 2.37 ? 5012 ? 0.306 4.5 0.306 ? 4.80 ? 1034 100.00 5 1 2.37 2.45 ? 4824 ? 0.245 5.6 0.245 ? 4.90 ? 994 100.00 6 1 2.45 2.54 ? 4770 ? 0.213 6.5 0.213 ? 4.90 ? 983 100.00 7 1 2.54 2.65 ? 4526 ? 0.175 7.9 0.175 ? 4.80 ? 937 100.00 8 1 2.65 2.76 ? 4348 ? 0.158 9.1 0.158 ? 4.80 ? 901 100.00 9 1 2.76 2.90 ? 4171 ? 0.133 10.5 0.133 ? 4.80 ? 868 100.00 10 1 2.90 3.06 ? 4011 ? 0.111 12.5 0.111 ? 4.80 ? 835 100.00 11 1 3.06 3.24 ? 3763 ? 0.098 14.4 0.098 ? 4.80 ? 783 100.00 12 1 3.24 3.47 ? 3545 ? 0.089 16.4 0.089 ? 4.80 ? 741 100.00 13 1 3.47 3.74 ? 3302 ? 0.078 18.4 0.078 ? 4.80 ? 692 100.00 14 1 3.74 4.10 ? 3062 ? 0.064 19.7 0.064 ? 4.70 ? 646 100.00 15 1 4.10 4.58 ? 2756 ? 0.060 21.1 0.060 ? 4.70 ? 591 100.00 16 1 4.58 5.29 ? 2373 ? 0.067 22.0 0.067 ? 4.60 ? 516 100.00 17 1 5.29 6.48 ? 1988 ? 0.077 22.5 0.077 ? 4.40 ? 453 100.00 18 1 6.48 9.17 ? 1553 ? 0.055 23.9 0.055 ? 4.20 ? 366 100.00 19 1 9.17 29.67 ? 803 ? 0.049 23.2 0.049 ? 3.80 ? 213 97.00 20 1 # _refine.entry_id 3GZI _refine.ls_d_res_high 2.050 _refine.ls_d_res_low 29.670 _refine.pdbx_ls_sigma_F 0.00 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.950 _refine.ls_number_reflns_obs 16004 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2. ATOM RECORDS CONTAIN RESIDUAL B FACTORS ONLY. 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 4. THE MODEL SHOWS TWO RAMACHANDAN OUTLIERS, ARG 32 AND PRO 33. THESE OUTLIERS ARE SITUATED IN A REGION OF DISORDERED ELECTRON DENSITY BETWEEN RESIDUES 32-38. 5. THERE IS UNIDENTIFIED DENSITY FOUND NEAR THE LIGAND BINDING SITE. IT WAS MODELED AS AN UNKNOWN LIGAND (UNL). ; _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.190 _refine.ls_R_factor_R_work 0.187 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.248 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.000 _refine.ls_number_reflns_R_free 799 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 38.319 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] -0.010 _refine.aniso_B[2][2] -0.720 _refine.aniso_B[3][3] 0.730 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.956 _refine.correlation_coeff_Fo_to_Fc_free 0.933 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R 0.189 _refine.pdbx_overall_ESU_R_Free 0.180 _refine.overall_SU_ML 0.117 _refine.overall_SU_B 8.202 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 81.08 _refine.B_iso_min 19.07 _refine.occupancy_max 1.00 _refine.occupancy_min 0.50 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1595 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 44 _refine_hist.number_atoms_solvent 128 _refine_hist.number_atoms_total 1767 _refine_hist.d_res_high 2.050 _refine_hist.d_res_low 29.670 # loop_ _refine_ls_restr.type _refine_ls_restr.pdbx_refine_id _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 'X-RAY DIFFRACTION' 1741 0.016 0.022 ? ? r_bond_other_d 'X-RAY DIFFRACTION' 1220 0.009 0.020 ? ? r_angle_refined_deg 'X-RAY DIFFRACTION' 2352 1.477 1.985 ? ? r_angle_other_deg 'X-RAY DIFFRACTION' 2970 1.101 3.000 ? ? r_dihedral_angle_1_deg 'X-RAY DIFFRACTION' 220 6.880 5.000 ? ? r_dihedral_angle_2_deg 'X-RAY DIFFRACTION' 78 33.787 23.590 ? ? r_dihedral_angle_3_deg 'X-RAY DIFFRACTION' 302 14.828 15.000 ? ? r_dihedral_angle_4_deg 'X-RAY DIFFRACTION' 14 18.422 15.000 ? ? r_chiral_restr 'X-RAY DIFFRACTION' 265 0.090 0.200 ? ? r_gen_planes_refined 'X-RAY DIFFRACTION' 1943 0.005 0.020 ? ? r_gen_planes_other 'X-RAY DIFFRACTION' 355 0.001 0.020 ? ? r_nbd_refined 'X-RAY DIFFRACTION' 379 0.238 0.200 ? ? r_nbd_other 'X-RAY DIFFRACTION' 1207 0.180 0.200 ? ? r_nbtor_refined 'X-RAY DIFFRACTION' 866 0.175 0.200 ? ? r_nbtor_other 'X-RAY DIFFRACTION' 858 0.087 0.200 ? ? r_xyhbond_nbd_refined 'X-RAY DIFFRACTION' 80 0.137 0.200 ? ? r_xyhbond_nbd_other 'X-RAY DIFFRACTION' 1 0.011 0.200 ? ? r_symmetry_vdw_refined 'X-RAY DIFFRACTION' 13 0.103 0.200 ? ? r_symmetry_vdw_other 'X-RAY DIFFRACTION' 64 0.281 0.200 ? ? r_symmetry_hbond_refined 'X-RAY DIFFRACTION' 18 0.130 0.200 ? ? r_mcbond_it 'X-RAY DIFFRACTION' 1204 2.373 3.000 ? ? r_mcbond_other 'X-RAY DIFFRACTION' 420 0.467 3.000 ? ? r_mcangle_it 'X-RAY DIFFRACTION' 1739 3.238 6.000 ? ? r_scbond_it 'X-RAY DIFFRACTION' 712 5.407 8.000 ? ? r_scangle_it 'X-RAY DIFFRACTION' 613 6.885 11.000 ? ? # _refine_ls_shell.d_res_high 2.050 _refine_ls_shell.d_res_low 2.103 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 100.000 _refine_ls_shell.number_reflns_R_work 1112 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.245 _refine_ls_shell.R_factor_R_free 0.317 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 62 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 1174 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3GZI _struct.title 'CRYSTAL STRUCTURE OF a transcriptional regulator of the tetR family (SHEW_3567) FROM SHEWANELLA LOIHICA PV-4 AT 2.05 A RESOLUTION' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text ;TETR FAMILY TRANSCRIPTIONAL REGULATOR, STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-2, TRANSCRIPTION ; _struct_keywords.pdbx_keywords TRANSCRIPTION _struct_keywords.entry_id 3GZI # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 3 ? I N N 3 ? J N N 3 ? K N N 3 ? L N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 13 ? GLU A 32 ? SER A 12 GLU A 31 1 ? 20 HELX_P HELX_P2 2 SER A 39 ? GLY A 48 ? SER A 38 GLY A 47 1 ? 10 HELX_P HELX_P3 3 GLY A 52 ? GLY A 59 ? GLY A 51 GLY A 58 1 ? 8 HELX_P HELX_P4 4 SER A 60 ? GLU A 86 ? SER A 59 GLU A 85 1 ? 27 HELX_P HELX_P5 5 SER A 91 ? HIS A 106 ? SER A 90 HIS A 105 1 ? 16 HELX_P HELX_P6 6 HIS A 108 ? GLY A 118 ? HIS A 107 GLY A 117 1 ? 11 HELX_P HELX_P7 7 LEU A 123 ? GLU A 125 ? LEU A 122 GLU A 124 5 ? 3 HELX_P HELX_P8 8 ASN A 126 ? VAL A 137 ? ASN A 125 VAL A 136 1 ? 12 HELX_P HELX_P9 9 ASN A 138 ? GLU A 140 ? ASN A 137 GLU A 139 5 ? 3 HELX_P HELX_P10 10 ALA A 143 ? LYS A 151 ? ALA A 142 LYS A 150 1 ? 9 HELX_P HELX_P11 11 ASP A 159 ? VAL A 177 ? ASP A 158 VAL A 176 1 ? 19 HELX_P HELX_P12 12 PRO A 178 ? VAL A 185 ? PRO A 177 VAL A 184 1 ? 8 HELX_P HELX_P13 13 THR A 190 ? MSE A 210 ? THR A 189 MSE A 209 1 ? 21 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A THR 67 C ? ? ? 1_555 A MSE 68 N ? ? A THR 66 A MSE 67 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale2 covale both ? A MSE 68 C ? ? ? 1_555 A ILE 69 N ? ? A MSE 67 A ILE 68 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale3 covale both ? A ALA 73 C ? ? ? 1_555 A MSE 74 N ? ? A ALA 72 A MSE 73 1_555 ? ? ? ? ? ? ? 1.348 ? ? covale4 covale both ? A MSE 74 C ? ? ? 1_555 A PRO 75 N ? ? A MSE 73 A PRO 74 1_555 ? ? ? ? ? ? ? 1.351 ? ? covale5 covale both ? A VAL 102 C ? ? ? 1_555 A MSE 103 N ? ? A VAL 101 A MSE 102 1_555 ? ? ? ? ? ? ? 1.337 ? ? covale6 covale both ? A MSE 103 C ? ? ? 1_555 A SER 104 N ? ? A MSE 102 A SER 103 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale7 covale both ? A LEU 112 C ? ? ? 1_555 A MSE 113 N ? ? A LEU 111 A MSE 112 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale8 covale both ? A MSE 113 C ? ? ? 1_555 A LEU 114 N ? ? A MSE 112 A LEU 113 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale9 covale both ? A ALA 169 C ? ? ? 1_555 A MSE 170 N ? ? A ALA 168 A MSE 169 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale10 covale both ? A MSE 170 C ? ? ? 1_555 A MSE 171 N ? ? A MSE 169 A MSE 170 1_555 ? ? ? ? ? ? ? 1.319 ? ? covale11 covale both ? A MSE 171 C ? ? ? 1_555 A VAL 172 N ? ? A MSE 170 A VAL 171 1_555 ? ? ? ? ? ? ? 1.312 ? ? covale12 covale both ? A LEU 209 C ? ? ? 1_555 A MSE 210 N ? ? A LEU 208 A MSE 209 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale13 covale both ? A MSE 210 C ? ? ? 1_555 A ASP 211 N ? ? A MSE 209 A ASP 210 1_555 ? ? ? ? ? ? ? 1.336 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A UNL 218 ? 10 'BINDING SITE FOR RESIDUE UNL A 218' AC2 Software A EDO 219 ? 5 'BINDING SITE FOR RESIDUE EDO A 219' AC3 Software A EDO 220 ? 3 'BINDING SITE FOR RESIDUE EDO A 220' AC4 Software A EDO 221 ? 3 'BINDING SITE FOR RESIDUE EDO A 221' AC5 Software A EDO 222 ? 7 'BINDING SITE FOR RESIDUE EDO A 222' AC6 Software A EDO 223 ? 3 'BINDING SITE FOR RESIDUE EDO A 223' AC7 Software A EDO 224 ? 4 'BINDING SITE FOR RESIDUE EDO A 224' AC8 Software A EDO 225 ? 4 'BINDING SITE FOR RESIDUE EDO A 225' AC9 Software A EDO 226 ? 5 'BINDING SITE FOR RESIDUE EDO A 226' BC1 Software A EDO 227 ? 4 'BINDING SITE FOR RESIDUE EDO A 227' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 10 ARG A 84 ? ARG A 83 . ? 1_555 ? 2 AC1 10 TYR A 99 ? TYR A 98 . ? 1_555 ? 3 AC1 10 PHE A 139 ? PHE A 138 . ? 1_555 ? 4 AC1 10 GLU A 140 ? GLU A 139 . ? 1_555 ? 5 AC1 10 ASN A 141 ? ASN A 140 . ? 1_555 ? 6 AC1 10 GLN A 164 ? GLN A 163 . ? 1_555 ? 7 AC1 10 PHE A 168 ? PHE A 167 . ? 1_555 ? 8 AC1 10 MSE A 171 ? MSE A 170 . ? 1_555 ? 9 AC1 10 VAL A 172 ? VAL A 171 . ? 1_555 ? 10 AC1 10 HOH L . ? HOH A 335 . ? 1_555 ? 11 AC2 5 TYR A 57 ? TYR A 56 . ? 1_555 ? 12 AC2 5 PHE A 58 ? PHE A 57 . ? 1_555 ? 13 AC2 5 LYS A 63 ? LYS A 62 . ? 1_555 ? 14 AC2 5 GLU A 183 ? GLU A 182 . ? 4_547 ? 15 AC2 5 HOH L . ? HOH A 347 . ? 1_555 ? 16 AC3 3 GLN A 97 ? GLN A 96 . ? 1_555 ? 17 AC3 3 SER A 101 ? SER A 100 . ? 1_555 ? 18 AC3 3 PRO A 191 ? PRO A 190 . ? 1_555 ? 19 AC4 3 MSE A 74 ? MSE A 73 . ? 1_555 ? 20 AC4 3 GLN A 121 ? GLN A 120 . ? 3_557 ? 21 AC4 3 TYR A 134 ? TYR A 133 . ? 3_557 ? 22 AC5 7 GLU A 62 ? GLU A 61 . ? 3_557 ? 23 AC5 7 HIS A 81 ? HIS A 80 . ? 1_555 ? 24 AC5 7 LYS A 82 ? LYS A 81 . ? 1_555 ? 25 AC5 7 ARG A 85 ? ARG A 84 . ? 1_555 ? 26 AC5 7 PRO A 124 ? PRO A 123 . ? 3_557 ? 27 AC5 7 GLU A 125 ? GLU A 124 . ? 3_557 ? 28 AC5 7 HOH L . ? HOH A 342 . ? 3_557 ? 29 AC6 3 LEU A 77 ? LEU A 76 . ? 1_555 ? 30 AC6 3 HIS A 81 ? HIS A 80 . ? 1_555 ? 31 AC6 3 HOH L . ? HOH A 318 . ? 1_555 ? 32 AC7 4 MSE A 74 ? MSE A 73 . ? 3_547 ? 33 AC7 4 PRO A 75 ? PRO A 74 . ? 3_547 ? 34 AC7 4 ALA A 127 ? ALA A 126 . ? 1_555 ? 35 AC7 4 HOH L . ? HOH A 352 . ? 1_555 ? 36 AC8 4 SER A 39 ? SER A 38 . ? 1_555 ? 37 AC8 4 ILE A 40 ? ILE A 39 . ? 1_555 ? 38 AC8 4 ARG A 41 ? ARG A 40 . ? 1_555 ? 39 AC8 4 HOH L . ? HOH A 268 . ? 1_555 ? 40 AC9 5 TYR A 35 ? TYR A 34 . ? 1_555 ? 41 AC9 5 ALA A 36 ? ALA A 35 . ? 1_555 ? 42 AC9 5 GLU A 125 ? GLU A 124 . ? 1_555 ? 43 AC9 5 ASN A 126 ? ASN A 125 . ? 1_555 ? 44 AC9 5 VAL A 129 ? VAL A 128 . ? 1_555 ? 45 BC1 4 ILE A 31 ? ILE A 30 . ? 1_555 ? 46 BC1 4 THR A 72 ? THR A 71 . ? 1_555 ? 47 BC1 4 HOH L . ? HOH A 229 . ? 1_555 ? 48 BC1 4 HOH L . ? HOH A 272 . ? 1_555 ? # _atom_sites.entry_id 3GZI _atom_sites.fract_transf_matrix[1][1] 0.012848 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.021817 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014557 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 ? ? ? A . n A 1 2 MSE 2 1 ? ? ? A . n A 1 3 ALA 3 2 ? ? ? A . n A 1 4 GLU 4 3 ? ? ? A . n A 1 5 ALA 5 4 ? ? ? A . n A 1 6 LYS 6 5 ? ? ? A . n A 1 7 SER 7 6 ? ? ? A . n A 1 8 ARG 8 7 ? ? ? A . n A 1 9 VAL 9 8 8 VAL VAL A . n A 1 10 GLY 10 9 9 GLY GLY A . n A 1 11 ARG 11 10 10 ARG ARG A . n A 1 12 PRO 12 11 11 PRO PRO A . n A 1 13 SER 13 12 12 SER SER A . n A 1 14 GLY 14 13 13 GLY GLY A . n A 1 15 ASP 15 14 14 ASP ASP A . n A 1 16 THR 16 15 15 THR THR A . n A 1 17 GLN 17 16 16 GLN GLN A . n A 1 18 ASN 18 17 17 ASN ASN A . n A 1 19 ARG 19 18 18 ARG ARG A . n A 1 20 ASP 20 19 19 ASP ASP A . n A 1 21 LYS 21 20 20 LYS LYS A . n A 1 22 LEU 22 21 21 LEU LEU A . n A 1 23 ILE 23 22 22 ILE ILE A . n A 1 24 LEU 24 23 23 LEU LEU A . n A 1 25 ALA 25 24 24 ALA ALA A . n A 1 26 ALA 26 25 25 ALA ALA A . n A 1 27 ARG 27 26 26 ARG ARG A . n A 1 28 ASN 28 27 27 ASN ASN A . n A 1 29 LEU 29 28 28 LEU LEU A . n A 1 30 PHE 30 29 29 PHE PHE A . n A 1 31 ILE 31 30 30 ILE ILE A . n A 1 32 GLU 32 31 31 GLU GLU A . n A 1 33 ARG 33 32 32 ARG ARG A . n A 1 34 PRO 34 33 33 PRO PRO A . n A 1 35 TYR 35 34 34 TYR TYR A . n A 1 36 ALA 36 35 35 ALA ALA A . n A 1 37 GLN 37 36 36 GLN GLN A . n A 1 38 VAL 38 37 37 VAL VAL A . n A 1 39 SER 39 38 38 SER SER A . n A 1 40 ILE 40 39 39 ILE ILE A . n A 1 41 ARG 41 40 40 ARG ARG A . n A 1 42 GLU 42 41 41 GLU GLU A . n A 1 43 ILE 43 42 42 ILE ILE A . n A 1 44 ALA 44 43 43 ALA ALA A . n A 1 45 SER 45 44 44 SER SER A . n A 1 46 LEU 46 45 45 LEU LEU A . n A 1 47 ALA 47 46 46 ALA ALA A . n A 1 48 GLY 48 47 47 GLY GLY A . n A 1 49 THR 49 48 48 THR THR A . n A 1 50 ASP 50 49 49 ASP ASP A . n A 1 51 PRO 51 50 50 PRO PRO A . n A 1 52 GLY 52 51 51 GLY GLY A . n A 1 53 LEU 53 52 52 LEU LEU A . n A 1 54 ILE 54 53 53 ILE ILE A . n A 1 55 ARG 55 54 54 ARG ARG A . n A 1 56 TYR 56 55 55 TYR TYR A . n A 1 57 TYR 57 56 56 TYR TYR A . n A 1 58 PHE 58 57 57 PHE PHE A . n A 1 59 GLY 59 58 58 GLY GLY A . n A 1 60 SER 60 59 59 SER SER A . n A 1 61 LYS 61 60 60 LYS LYS A . n A 1 62 GLU 62 61 61 GLU GLU A . n A 1 63 LYS 63 62 62 LYS LYS A . n A 1 64 LEU 64 63 63 LEU LEU A . n A 1 65 PHE 65 64 64 PHE PHE A . n A 1 66 SER 66 65 65 SER SER A . n A 1 67 THR 67 66 66 THR THR A . n A 1 68 MSE 68 67 67 MSE MSE A . n A 1 69 ILE 69 68 68 ILE ILE A . n A 1 70 HIS 70 69 69 HIS HIS A . n A 1 71 GLU 71 70 70 GLU GLU A . n A 1 72 THR 72 71 71 THR THR A . n A 1 73 ALA 73 72 72 ALA ALA A . n A 1 74 MSE 74 73 73 MSE MSE A . n A 1 75 PRO 75 74 74 PRO PRO A . n A 1 76 VAL 76 75 75 VAL VAL A . n A 1 77 LEU 77 76 76 LEU LEU A . n A 1 78 ALA 78 77 77 ALA ALA A . n A 1 79 GLN 79 78 78 GLN GLN A . n A 1 80 LEU 80 79 79 LEU LEU A . n A 1 81 HIS 81 80 80 HIS HIS A . n A 1 82 LYS 82 81 81 LYS LYS A . n A 1 83 ALA 83 82 82 ALA ALA A . n A 1 84 ARG 84 83 83 ARG ARG A . n A 1 85 ARG 85 84 84 ARG ARG A . n A 1 86 GLU 86 85 85 GLU GLU A . n A 1 87 THR 87 86 86 THR THR A . n A 1 88 ARG 88 87 87 ARG ARG A . n A 1 89 GLN 89 88 88 GLN GLN A . n A 1 90 GLU 90 89 89 GLU GLU A . n A 1 91 SER 91 90 90 SER SER A . n A 1 92 PRO 92 91 91 PRO PRO A . n A 1 93 ALA 93 92 92 ALA ALA A . n A 1 94 ALA 94 93 93 ALA ALA A . n A 1 95 LEU 95 94 94 LEU LEU A . n A 1 96 LEU 96 95 95 LEU LEU A . n A 1 97 GLN 97 96 96 GLN GLN A . n A 1 98 THR 98 97 97 THR THR A . n A 1 99 TYR 99 98 98 TYR TYR A . n A 1 100 TYR 100 99 99 TYR TYR A . n A 1 101 SER 101 100 100 SER SER A . n A 1 102 VAL 102 101 101 VAL VAL A . n A 1 103 MSE 103 102 102 MSE MSE A . n A 1 104 SER 104 103 103 SER SER A . n A 1 105 LYS 105 104 104 LYS LYS A . n A 1 106 HIS 106 105 105 HIS HIS A . n A 1 107 PRO 107 106 106 PRO PRO A . n A 1 108 HIS 108 107 107 HIS HIS A . n A 1 109 PHE 109 108 108 PHE PHE A . n A 1 110 PRO 110 109 109 PRO PRO A . n A 1 111 ARG 111 110 110 ARG ARG A . n A 1 112 LEU 112 111 111 LEU LEU A . n A 1 113 MSE 113 112 112 MSE MSE A . n A 1 114 LEU 114 113 113 LEU LEU A . n A 1 115 ARG 115 114 114 ARG ARG A . n A 1 116 ILE 116 115 115 ILE ILE A . n A 1 117 ALA 117 116 116 ALA ALA A . n A 1 118 GLY 118 117 117 GLY GLY A . n A 1 119 LEU 119 118 118 LEU LEU A . n A 1 120 ASP 120 119 119 ASP ASP A . n A 1 121 GLN 121 120 120 GLN GLN A . n A 1 122 SER 122 121 121 SER SER A . n A 1 123 LEU 123 122 122 LEU LEU A . n A 1 124 PRO 124 123 123 PRO PRO A . n A 1 125 GLU 125 124 124 GLU GLU A . n A 1 126 ASN 126 125 125 ASN ASN A . n A 1 127 ALA 127 126 126 ALA ALA A . n A 1 128 GLU 128 127 127 GLU GLU A . n A 1 129 VAL 129 128 128 VAL VAL A . n A 1 130 THR 130 129 129 THR THR A . n A 1 131 LYS 131 130 130 LYS LYS A . n A 1 132 ALA 132 131 131 ALA ALA A . n A 1 133 PHE 133 132 132 PHE PHE A . n A 1 134 TYR 134 133 133 TYR TYR A . n A 1 135 GLU 135 134 134 GLU GLU A . n A 1 136 VAL 136 135 135 VAL VAL A . n A 1 137 VAL 137 136 136 VAL VAL A . n A 1 138 ASN 138 137 137 ASN ASN A . n A 1 139 PHE 139 138 138 PHE PHE A . n A 1 140 GLU 140 139 139 GLU GLU A . n A 1 141 ASN 141 140 140 ASN ASN A . n A 1 142 ILE 142 141 141 ILE ILE A . n A 1 143 ALA 143 142 142 ALA ALA A . n A 1 144 ILE 144 143 143 ILE ILE A . n A 1 145 PHE 145 144 144 PHE PHE A . n A 1 146 GLN 146 145 145 GLN GLN A . n A 1 147 ARG 147 146 146 ARG ARG A . n A 1 148 LEU 148 147 147 LEU LEU A . n A 1 149 LYS 149 148 148 LYS LYS A . n A 1 150 ASP 150 149 149 ASP ASP A . n A 1 151 LYS 151 150 150 LYS LYS A . n A 1 152 ASN 152 151 151 ASN ASN A . n A 1 153 LEU 153 152 152 LEU LEU A . n A 1 154 LEU 154 153 153 LEU LEU A . n A 1 155 LYS 155 154 154 LYS LYS A . n A 1 156 ASP 156 155 155 ASP ASP A . n A 1 157 ASP 157 156 156 ASP ASP A . n A 1 158 VAL 158 157 157 VAL VAL A . n A 1 159 ASP 159 158 158 ASP ASP A . n A 1 160 ALA 160 159 159 ALA ALA A . n A 1 161 HIS 161 160 160 HIS HIS A . n A 1 162 CYS 162 161 161 CYS CYS A . n A 1 163 ALA 163 162 162 ALA ALA A . n A 1 164 GLN 164 163 163 GLN GLN A . n A 1 165 LEU 165 164 164 LEU LEU A . n A 1 166 SER 166 165 165 SER SER A . n A 1 167 PHE 167 166 166 PHE PHE A . n A 1 168 PHE 168 167 167 PHE PHE A . n A 1 169 ALA 169 168 168 ALA ALA A . n A 1 170 MSE 170 169 169 MSE MSE A . n A 1 171 MSE 171 170 170 MSE MSE A . n A 1 172 VAL 172 171 171 VAL VAL A . n A 1 173 PHE 173 172 172 PHE PHE A . n A 1 174 PRO 174 173 173 PRO PRO A . n A 1 175 PHE 175 174 174 PHE PHE A . n A 1 176 ILE 176 175 175 ILE ILE A . n A 1 177 VAL 177 176 176 VAL VAL A . n A 1 178 PRO 178 177 177 PRO PRO A . n A 1 179 GLU 179 178 178 GLU GLU A . n A 1 180 ASN 180 179 179 ASN ASN A . n A 1 181 LEU 181 180 180 LEU LEU A . n A 1 182 LEU 182 181 181 LEU LEU A . n A 1 183 GLU 183 182 182 GLU GLU A . n A 1 184 ARG 184 183 183 ARG ARG A . n A 1 185 VAL 185 184 184 VAL VAL A . n A 1 186 GLY 186 185 185 GLY GLY A . n A 1 187 ILE 187 186 186 ILE ILE A . n A 1 188 GLU 188 187 187 GLU GLU A . n A 1 189 LEU 189 188 188 LEU LEU A . n A 1 190 THR 190 189 189 THR THR A . n A 1 191 PRO 191 190 190 PRO PRO A . n A 1 192 ASP 192 191 191 ASP ASP A . n A 1 193 PHE 193 192 192 PHE PHE A . n A 1 194 LEU 194 193 193 LEU LEU A . n A 1 195 GLN 195 194 194 GLN GLN A . n A 1 196 LEU 196 195 195 LEU LEU A . n A 1 197 LEU 197 196 196 LEU LEU A . n A 1 198 ALA 198 197 197 ALA ALA A . n A 1 199 GLU 199 198 198 GLU GLU A . n A 1 200 GLN 200 199 199 GLN GLN A . n A 1 201 ASN 201 200 200 ASN ASN A . n A 1 202 THR 202 201 201 THR THR A . n A 1 203 ARG 203 202 202 ARG ARG A . n A 1 204 LEU 204 203 203 LEU LEU A . n A 1 205 LEU 205 204 204 LEU LEU A . n A 1 206 GLN 206 205 205 GLN GLN A . n A 1 207 ARG 207 206 206 ARG ARG A . n A 1 208 GLY 208 207 207 GLY GLY A . n A 1 209 LEU 209 208 208 LEU LEU A . n A 1 210 MSE 210 209 209 MSE MSE A . n A 1 211 ASP 211 210 210 ASP ASP A . n A 1 212 VAL 212 211 ? ? ? A . n A 1 213 LYS 213 212 ? ? ? A . n A 1 214 ASP 214 213 ? ? ? A . n A 1 215 GLU 215 214 ? ? ? A . n A 1 216 ARG 216 215 ? ? ? A . n A 1 217 ASP 217 216 ? ? ? A . n A 1 218 GLU 218 217 ? ? ? A . n # _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 UNL 1 218 1 UNL UNL A . C 3 EDO 1 219 2 EDO EDO A . D 3 EDO 1 220 3 EDO EDO A . E 3 EDO 1 221 4 EDO EDO A . F 3 EDO 1 222 5 EDO EDO A . G 3 EDO 1 223 6 EDO EDO A . H 3 EDO 1 224 7 EDO EDO A . I 3 EDO 1 225 8 EDO EDO A . J 3 EDO 1 226 9 EDO EDO A . K 3 EDO 1 227 10 EDO EDO A . L 4 HOH 1 228 11 HOH HOH A . L 4 HOH 2 229 12 HOH HOH A . L 4 HOH 3 230 13 HOH HOH A . L 4 HOH 4 231 14 HOH HOH A . L 4 HOH 5 232 15 HOH HOH A . L 4 HOH 6 233 16 HOH HOH A . L 4 HOH 7 234 17 HOH HOH A . L 4 HOH 8 235 18 HOH HOH A . L 4 HOH 9 236 19 HOH HOH A . L 4 HOH 10 237 20 HOH HOH A . L 4 HOH 11 238 21 HOH HOH A . L 4 HOH 12 239 22 HOH HOH A . L 4 HOH 13 240 23 HOH HOH A . L 4 HOH 14 241 24 HOH HOH A . L 4 HOH 15 242 25 HOH HOH A . L 4 HOH 16 243 26 HOH HOH A . L 4 HOH 17 244 27 HOH HOH A . L 4 HOH 18 245 28 HOH HOH A . L 4 HOH 19 246 29 HOH HOH A . L 4 HOH 20 247 30 HOH HOH A . L 4 HOH 21 248 31 HOH HOH A . L 4 HOH 22 249 32 HOH HOH A . L 4 HOH 23 250 33 HOH HOH A . L 4 HOH 24 251 34 HOH HOH A . L 4 HOH 25 252 35 HOH HOH A . L 4 HOH 26 253 36 HOH HOH A . L 4 HOH 27 254 37 HOH HOH A . L 4 HOH 28 255 38 HOH HOH A . L 4 HOH 29 256 39 HOH HOH A . L 4 HOH 30 257 40 HOH HOH A . L 4 HOH 31 258 41 HOH HOH A . L 4 HOH 32 259 42 HOH HOH A . L 4 HOH 33 260 43 HOH HOH A . L 4 HOH 34 261 44 HOH HOH A . L 4 HOH 35 262 45 HOH HOH A . L 4 HOH 36 263 46 HOH HOH A . L 4 HOH 37 264 47 HOH HOH A . L 4 HOH 38 265 48 HOH HOH A . L 4 HOH 39 266 49 HOH HOH A . L 4 HOH 40 267 50 HOH HOH A . L 4 HOH 41 268 51 HOH HOH A . L 4 HOH 42 269 52 HOH HOH A . L 4 HOH 43 270 53 HOH HOH A . L 4 HOH 44 271 54 HOH HOH A . L 4 HOH 45 272 55 HOH HOH A . L 4 HOH 46 273 56 HOH HOH A . L 4 HOH 47 274 57 HOH HOH A . L 4 HOH 48 275 58 HOH HOH A . L 4 HOH 49 276 59 HOH HOH A . L 4 HOH 50 277 60 HOH HOH A . L 4 HOH 51 278 61 HOH HOH A . L 4 HOH 52 279 62 HOH HOH A . L 4 HOH 53 280 63 HOH HOH A . L 4 HOH 54 281 64 HOH HOH A . L 4 HOH 55 282 65 HOH HOH A . L 4 HOH 56 283 66 HOH HOH A . L 4 HOH 57 284 67 HOH HOH A . L 4 HOH 58 285 68 HOH HOH A . L 4 HOH 59 286 69 HOH HOH A . L 4 HOH 60 287 70 HOH HOH A . L 4 HOH 61 288 71 HOH HOH A . L 4 HOH 62 289 72 HOH HOH A . L 4 HOH 63 290 73 HOH HOH A . L 4 HOH 64 291 74 HOH HOH A . L 4 HOH 65 292 75 HOH HOH A . L 4 HOH 66 293 76 HOH HOH A . L 4 HOH 67 294 77 HOH HOH A . L 4 HOH 68 295 78 HOH HOH A . L 4 HOH 69 296 79 HOH HOH A . L 4 HOH 70 297 80 HOH HOH A . L 4 HOH 71 298 81 HOH HOH A . L 4 HOH 72 299 82 HOH HOH A . L 4 HOH 73 300 83 HOH HOH A . L 4 HOH 74 301 84 HOH HOH A . L 4 HOH 75 302 85 HOH HOH A . L 4 HOH 76 303 86 HOH HOH A . L 4 HOH 77 304 87 HOH HOH A . L 4 HOH 78 305 88 HOH HOH A . L 4 HOH 79 306 89 HOH HOH A . L 4 HOH 80 307 90 HOH HOH A . L 4 HOH 81 308 91 HOH HOH A . L 4 HOH 82 309 92 HOH HOH A . L 4 HOH 83 310 93 HOH HOH A . L 4 HOH 84 311 94 HOH HOH A . L 4 HOH 85 312 95 HOH HOH A . L 4 HOH 86 313 96 HOH HOH A . L 4 HOH 87 314 97 HOH HOH A . L 4 HOH 88 315 98 HOH HOH A . L 4 HOH 89 316 99 HOH HOH A . L 4 HOH 90 317 100 HOH HOH A . L 4 HOH 91 318 101 HOH HOH A . L 4 HOH 92 319 102 HOH HOH A . L 4 HOH 93 320 103 HOH HOH A . L 4 HOH 94 321 104 HOH HOH A . L 4 HOH 95 322 105 HOH HOH A . L 4 HOH 96 323 106 HOH HOH A . L 4 HOH 97 324 107 HOH HOH A . L 4 HOH 98 325 108 HOH HOH A . L 4 HOH 99 326 109 HOH HOH A . L 4 HOH 100 327 110 HOH HOH A . L 4 HOH 101 328 111 HOH HOH A . L 4 HOH 102 329 112 HOH HOH A . L 4 HOH 103 330 113 HOH HOH A . L 4 HOH 104 331 114 HOH HOH A . L 4 HOH 105 332 115 HOH HOH A . L 4 HOH 106 333 116 HOH HOH A . L 4 HOH 107 334 117 HOH HOH A . L 4 HOH 108 335 118 HOH HOH A . L 4 HOH 109 336 119 HOH HOH A . L 4 HOH 110 337 120 HOH HOH A . L 4 HOH 111 338 121 HOH HOH A . L 4 HOH 112 339 122 HOH HOH A . L 4 HOH 113 340 123 HOH HOH A . L 4 HOH 114 341 124 HOH HOH A . L 4 HOH 115 342 125 HOH HOH A . L 4 HOH 116 343 126 HOH HOH A . L 4 HOH 117 344 127 HOH HOH A . L 4 HOH 118 345 128 HOH HOH A . L 4 HOH 119 346 129 HOH HOH A . L 4 HOH 120 347 130 HOH HOH A . L 4 HOH 121 348 131 HOH HOH A . L 4 HOH 122 349 132 HOH HOH A . L 4 HOH 123 350 133 HOH HOH A . L 4 HOH 124 351 134 HOH HOH A . L 4 HOH 125 352 135 HOH HOH A . L 4 HOH 126 353 136 HOH HOH A . L 4 HOH 127 354 137 HOH HOH A . L 4 HOH 128 355 138 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 68 A MSE 67 ? MET SELENOMETHIONINE 2 A MSE 74 A MSE 73 ? MET SELENOMETHIONINE 3 A MSE 103 A MSE 102 ? MET SELENOMETHIONINE 4 A MSE 113 A MSE 112 ? MET SELENOMETHIONINE 5 A MSE 170 A MSE 169 ? MET SELENOMETHIONINE 6 A MSE 171 A MSE 170 ? MET SELENOMETHIONINE 7 A MSE 210 A MSE 209 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 8310 ? 1 MORE -3 ? 1 'SSA (A^2)' 20210 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_545 -x,-y-1,z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 -45.8360000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-04-21 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-11-01 4 'Structure model' 1 3 2019-07-24 5 'Structure model' 1 4 2023-02-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Refinement description' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' 7 5 'Structure model' 'Database references' 8 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' software 3 4 'Structure model' struct_conn 4 5 'Structure model' database_2 5 5 'Structure model' struct_ref_seq_dif 6 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.name' 3 4 'Structure model' '_software.classification' 4 4 'Structure model' '_software.contact_author' 5 4 'Structure model' '_software.contact_author_email' 6 4 'Structure model' '_software.language' 7 4 'Structure model' '_software.location' 8 4 'Structure model' '_software.name' 9 4 'Structure model' '_software.type' 10 4 'Structure model' '_software.version' 11 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 12 5 'Structure model' '_database_2.pdbx_DOI' 13 5 'Structure model' '_database_2.pdbx_database_accession' 14 5 'Structure model' '_struct_ref_seq_dif.details' 15 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 16 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 17 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 8.9202 _pdbx_refine_tls.origin_y -15.0819 _pdbx_refine_tls.origin_z 75.0405 _pdbx_refine_tls.T[1][1] -0.0648 _pdbx_refine_tls.T[2][2] -0.1091 _pdbx_refine_tls.T[3][3] -0.0486 _pdbx_refine_tls.T[1][2] 0.0123 _pdbx_refine_tls.T[1][3] -0.0308 _pdbx_refine_tls.T[2][3] -0.0229 _pdbx_refine_tls.L[1][1] 1.1459 _pdbx_refine_tls.L[2][2] 0.4375 _pdbx_refine_tls.L[3][3] 0.7833 _pdbx_refine_tls.L[1][2] 0.3079 _pdbx_refine_tls.L[1][3] -0.5228 _pdbx_refine_tls.L[2][3] -0.2547 _pdbx_refine_tls.S[1][1] -0.0336 _pdbx_refine_tls.S[2][2] 0.0188 _pdbx_refine_tls.S[3][3] 0.0148 _pdbx_refine_tls.S[1][2] -0.0520 _pdbx_refine_tls.S[1][3] 0.0765 _pdbx_refine_tls.S[2][3] 0.0123 _pdbx_refine_tls.S[2][1] 0.0195 _pdbx_refine_tls.S[3][1] 0.0025 _pdbx_refine_tls.S[3][2] -0.0517 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.beg_auth_seq_id 8 _pdbx_refine_tls_group.selection_details ? _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 210 _pdbx_refine_tls_group.beg_label_asym_id . _pdbx_refine_tls_group.beg_label_seq_id . _pdbx_refine_tls_group.end_label_asym_id . _pdbx_refine_tls_group.end_label_seq_id . _pdbx_refine_tls_group.selection ? # _phasing.method SAD # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal REFMAC 5.2.0019 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 1 PHENIX . ? package 'P.D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 2 SHELX . ? package 'George M. Sheldrick' gsheldr@shelx.uni-ac.gwdg.de phasing http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 3 MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 4 SCALA 3.2.5 5/04/2004 other 'Phil R. Evans' pre@mrc-lmb.cam.ac.uk 'data scaling' http://www.ccp4.ac.uk/dist/html/scala.html Fortran_77 ? 5 PDB_EXTRACT 3.006 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 6 MOSFLM . ? ? ? ? 'data reduction' ? ? ? 7 SHELXD . ? ? ? ? phasing ? ? ? 8 autoSHARP . ? ? ? ? phasing ? ? ? 9 # _pdbx_entry_details.entry_id 3GZI _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. ; _pdbx_entry_details.has_ligand_of_interest ? # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 CB _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 GLU _pdbx_validate_rmsd_bond.auth_seq_id_1 124 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 CG _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 GLU _pdbx_validate_rmsd_bond.auth_seq_id_2 124 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.401 _pdbx_validate_rmsd_bond.bond_target_value 1.517 _pdbx_validate_rmsd_bond.bond_deviation -0.116 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.019 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PHE A 29 ? ? -129.74 -54.48 2 1 ARG A 32 ? ? -153.01 -148.69 3 1 PRO A 33 ? ? -34.87 173.43 4 1 TYR A 34 ? ? -98.35 -100.50 5 1 ALA A 35 ? ? -92.64 -81.82 6 1 GLU A 89 ? ? -37.53 112.56 # _pdbx_validate_peptide_omega.id 1 _pdbx_validate_peptide_omega.PDB_model_num 1 _pdbx_validate_peptide_omega.auth_comp_id_1 GLN _pdbx_validate_peptide_omega.auth_asym_id_1 A _pdbx_validate_peptide_omega.auth_seq_id_1 88 _pdbx_validate_peptide_omega.PDB_ins_code_1 ? _pdbx_validate_peptide_omega.label_alt_id_1 ? _pdbx_validate_peptide_omega.auth_comp_id_2 GLU _pdbx_validate_peptide_omega.auth_asym_id_2 A _pdbx_validate_peptide_omega.auth_seq_id_2 89 _pdbx_validate_peptide_omega.PDB_ins_code_2 ? _pdbx_validate_peptide_omega.label_alt_id_2 ? _pdbx_validate_peptide_omega.omega -143.12 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ARG 32 ? CG ? A ARG 33 CG 2 1 Y 1 A ARG 32 ? CD ? A ARG 33 CD 3 1 Y 1 A ARG 32 ? NE ? A ARG 33 NE 4 1 Y 1 A ARG 32 ? CZ ? A ARG 33 CZ 5 1 Y 1 A ARG 32 ? NH1 ? A ARG 33 NH1 6 1 Y 1 A ARG 32 ? NH2 ? A ARG 33 NH2 7 1 Y 1 A TYR 34 ? CG ? A TYR 35 CG 8 1 Y 1 A TYR 34 ? CD1 ? A TYR 35 CD1 9 1 Y 1 A TYR 34 ? CD2 ? A TYR 35 CD2 10 1 Y 1 A TYR 34 ? CE1 ? A TYR 35 CE1 11 1 Y 1 A TYR 34 ? CE2 ? A TYR 35 CE2 12 1 Y 1 A TYR 34 ? CZ ? A TYR 35 CZ 13 1 Y 1 A TYR 34 ? OH ? A TYR 35 OH 14 1 Y 1 A GLN 36 ? CG ? A GLN 37 CG 15 1 Y 1 A GLN 36 ? CD ? A GLN 37 CD 16 1 Y 1 A GLN 36 ? OE1 ? A GLN 37 OE1 17 1 Y 1 A GLN 36 ? NE2 ? A GLN 37 NE2 18 1 Y 1 A ARG 54 ? CD ? A ARG 55 CD 19 1 Y 1 A ARG 54 ? NE ? A ARG 55 NE 20 1 Y 1 A ARG 54 ? CZ ? A ARG 55 CZ 21 1 Y 1 A ARG 54 ? NH1 ? A ARG 55 NH1 22 1 Y 1 A ARG 54 ? NH2 ? A ARG 55 NH2 23 1 Y 1 A LYS 81 ? CE ? A LYS 82 CE 24 1 Y 1 A LYS 81 ? NZ ? A LYS 82 NZ 25 1 Y 1 A GLU 85 ? CD ? A GLU 86 CD 26 1 Y 1 A GLU 85 ? OE1 ? A GLU 86 OE1 27 1 Y 1 A GLU 85 ? OE2 ? A GLU 86 OE2 28 1 Y 1 A ARG 87 ? CD ? A ARG 88 CD 29 1 Y 1 A ARG 87 ? NE ? A ARG 88 NE 30 1 Y 1 A ARG 87 ? CZ ? A ARG 88 CZ 31 1 Y 1 A ARG 87 ? NH1 ? A ARG 88 NH1 32 1 Y 1 A ARG 87 ? NH2 ? A ARG 88 NH2 33 1 Y 1 A GLN 88 ? CG ? A GLN 89 CG 34 1 Y 1 A GLN 88 ? CD ? A GLN 89 CD 35 1 Y 1 A GLN 88 ? OE1 ? A GLN 89 OE1 36 1 Y 1 A GLN 88 ? NE2 ? A GLN 89 NE2 37 1 Y 1 A ASP 210 ? CG ? A ASP 211 CG 38 1 Y 1 A ASP 210 ? OD1 ? A ASP 211 OD1 39 1 Y 1 A ASP 210 ? OD2 ? A ASP 211 OD2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 0 ? A GLY 1 2 1 Y 1 A MSE 1 ? A MSE 2 3 1 Y 1 A ALA 2 ? A ALA 3 4 1 Y 1 A GLU 3 ? A GLU 4 5 1 Y 1 A ALA 4 ? A ALA 5 6 1 Y 1 A LYS 5 ? A LYS 6 7 1 Y 1 A SER 6 ? A SER 7 8 1 Y 1 A ARG 7 ? A ARG 8 9 1 Y 1 A VAL 211 ? A VAL 212 10 1 Y 1 A LYS 212 ? A LYS 213 11 1 Y 1 A ASP 213 ? A ASP 214 12 1 Y 1 A GLU 214 ? A GLU 215 13 1 Y 1 A ARG 215 ? A ARG 216 14 1 Y 1 A ASP 216 ? A ASP 217 15 1 Y 1 A GLU 217 ? A GLU 218 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'UNKNOWN LIGAND' UNL 3 1,2-ETHANEDIOL EDO 4 water HOH #